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import re def replace_path(oumap, path): """ Replace path UIDs with readable OU names""" pattern = re.compile(r'\b(' + '|'.join(oumap.keys()) + r')\b') result = pattern.sub(lambda x: oumap[x.group()], path) return u'{}'.format(result)
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def _len_arg(typ): """Returns the length of the arguments to the given type.""" try: return len(typ.__args__) except AttributeError: # For Any type, which takes no arguments. return 0
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def to_str(str_or_bytes): """if input type is bytes, cast to string; return""" if type(str_or_bytes) is str: return str_or_bytes elif type(str_or_bytes) is bytes: return str_or_bytes.decode('utf-8') else: raise ValueError("str_or_bytes is not type str or bytes")
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import random def microtest(hyp, point, dimension_count, distance_metric, threshold, rng=random): """ Returns true if the hypothesis has any centroids within the threshold distance of the point as calculated by the given distance metric. Positional arguments: hyp -- a hypothesis point -- a po...
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def cal_types(calendar_type): """ Define the julian date of the hijra and the intercalary years, according to the different calendar types: see http://www.staff.science.uu.nl/~gent0113/islam/islam_tabcal.htm and http://www.staff.science.uu.nl/~gent0113/islam/islam_tabcal_variants.htm """ calendar_types = {"1" : [...
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def load_input(filename): """ Load input file """ with open(filename) as f: return [word[1:-1] for word in "".join(f.readlines()).strip().split(",")]
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def merge_comp_optional_depends(optional_deps): """ merge the condition for the dependency of same component name """ merge_depends = [] if optional_deps: optional_deps.sort(key=lambda x: x["comp_name"]) last_dep = "" for dep in optional_deps: # print("optional dependency...
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def all_true(funcs): """Combine several ``is_independent`` functions into one Parameters ---------- funcs : list-like A list of ``is_independent`` functions Returns ------- combined_func : function A new function which returns true of all the input functions are true ""...
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def gen_cppcheck_enables(enables): """生成cppcheck的enable参数 格式:enable1, enable2, ... """ # 每个enable参数用逗号隔开 return '--enable={}'.format(','.join(enables))
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def get_file_text(path, encoding): """Returns all text contents of a file at the given path in the form of a string.""" with open(path, mode='r', encoding=encoding) as f: return f.read()
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def load(filename): """ 读取文件中的数据 """ x_data = [] y_data = [] with open(filename, "r") as fp: for line in fp: line = line.strip() x, y = line.split(",") x_data.append(float(x.strip())) y_data.append(float(y.strip())) return x_data, y_d...
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import os def get_files_in_dir(startPath): """ gets a recursive list of relative paths inside this directory """ working = [""] results = [] while len(working) > 0: current = working.pop(0) p = os.path.join(startPath, current) if (os.path.isfile(p)): results.append(...
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def voto(idade=0): """ => Funcao calcula elegibilidade do votante param idade: recebe a idade do votante default value: 0 return: retorna elegibilidade do votante """ if idade < 18: elegibilidade = 'NAO PODE VOTAR' elif idade > 65: elegibilidade = 'VOTO OPCIONAL' else: elegibilidade = 'VOTO OBRIGATORIO' ...
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def get_feature_orders(): """ Returns an ordered list of features to use on webpage and for model prediction (dataframe columns must be in correct order so that model.predict(dataframe) will perform correctly) """ feature_order = [ "property_type", "room_type", "accommod...
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def print_blank_history_window(min, max, terminal): """Figures out the first row under the header, and writes until it reaches the row above the footer. :param min: integer number describing the height of the header :param max: integer number describing the height of the footer :param width: overall wi...
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def standard_program_roles(): """ Standard service roles that every week. """ standard_program_roles = [ "presider", "vocalist1", "vocalist2", "vocalist3", "pianist", "guitarist", "drummer", "bassist", "audio", "powerpoint",...
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def lowest_common_ancestor(t, u, v): """Find the lowest common ancestor of two nodes Parameters ---------- t : an `Ultrametric` tree or `nx.DiGraph` The tree or directed acyclic graph on which to find ancestors. u, v : int The node IDs in `t` for which to find the common ancestor ...
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import importlib def call_module_function(*arguments): """ Dynamically calls specified function from specified package and module, on the given image. The three arguments of the function represent, in order: the input image, any extra input images (necessary in the case of many-to- operations, empty other...
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def get_dict_from_list(smu_info_list): """ Given a SMUInfo array, returns a dictionary keyed by the SMU name with SMUInfo as the value. """ smu_info_dict = {} for smu_info in smu_info_list: smu_info_dict[smu_info.name] = smu_info return smu_info_dict
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def _c_null_pointer(p): """Returns true if ctypes pointer is null.""" return (not bool(p))
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def sysv_hash(symbol): """sysv_hash(str) -> int Function used to generate SYSV-style hashes for strings. """ h = 0 g = 0 for c in symbol: h = (h << 4) + ord(c) g = h & 0xf0000000 h ^= (g >> 24) h &= ~g return h & 0xffffffff
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def get_rev_recon(tree, recon, stree): """ Returns a reverse reconciliation A reverse reconciliation is a mapping from nodes in the species tree to lists of nodes in the gene tree. """ rev_recon = {} nodes = set(tree.postorder()) for node, snode in recon.iteritems(): if node not...
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def _unshaped_initializer(fn, **kwargs): """Build a flax-style initializer that ignores shapes. Args: fn: Callable that takes a random number generator and some keyword arguments, and returns an initial parameter value. **kwargs: Arguments to pass to fn. Returns: Call...
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def parse_boundary_position_indicator(element): """ Parameters ---------- element : The node-element instance. Returns ------- indicator : 'corner|6NEF' : For example, the 8 corners of the crazy mesh. 'corner-edge|2NEF.6NEB' : For example, at the 12 domain edge (ex...
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def get_consecutive_num(arr): """ Method to get indices of second number in a pair of consecutive numbers Note: solve_90f3ed37 uses this function """ rows = [] for i in range(len(arr) - 1): if (arr[i] + 1) == arr[i + 1]: rows.append(arr[i + 1]) return rows
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def validatePath(path): """Returns the validated path""" return path
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from typing import Counter def _eigenvals_triangular(M, multiple=False): """A fast decision for eigenvalues of an upper or a lower triangular matrix. """ diagonal_entries = [M[i, i] for i in range(M.rows)] if multiple: return diagonal_entries return dict(Counter(diagonal_entries))
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def context_from_mentions(mentions): """Returns IDs of medical concepts that are present.""" return [m['id'] for m in mentions if m['choice_id'] == 'present']
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def getFileId(fname): """ Extract the id from a filename """ return '_'.join(fname.split('_')[:4])
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import logging def convert_postprocessing_metric(metric, value, inUnit, outUnit): """ If GME testbench metrics have either degrees Celsius or Fahrenheit, convert data from Kelvin to desired units. """ logger = logging.getLogger() logger.info('Converting ' + metric + ' of ' + str(value) + ' ' +...
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def station_name(f): """ From the file name (f), extract the station name. Gets the data from the file name directly and assumes the file name is formatted as Data/Station_info.csv. """ return f.split('/')[1].split('_')[0]
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def string_to_values(input_string): """Method that takes a string of '|'-delimited values and converts them to a list of values.""" value_list = [] for token in input_string.split('|'): value_list.append(float(token)) return value_list
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def generate_reference(model, gen, field='reference', prefix='', max_retries=10): """ Generate a unique reference given: :param model: the class of the django model :param gen: a function without arguments that returns part or all the reference :param field: reference field of the model that needs ...
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import pickle def load_ami_data(ami_id, data_type): """ ami_id: 191209 = manual transcription asr-200214 = Linlin's ASR output (CUED internal, WER = 20%) asr-200124 = AMI ASR Official Release """ path = "/home/alta/summary/pm574/summariser1/lib/model_data/ami-{}.{}.pk.bin"....
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def pivoting(tableaux,_colPivot, _linePivot): """ [function to make a pivonting from tableaux matrix] Arguments: tableaux {[matrix]} -- [description] _colPivot {[int]} -- [index of column pivot] _linePivot {[int]} -- [index of line pivot] Returns: [matrix] -- [t...
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def extract_dep_contexts(doc): """Extract dependency contexts as key:val pairs Given a word in a sentence, return it's modifiers:dependency and it's head:dependency with this relation being labeled as INV. Example: {'austrailian': 'scientists amod-INV'} {'scientists': 'austrailian amod'} s...
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def _has_eval_results_call(cls): """Return True if cls has a __call__ decorated with @eval_results """ return getattr(getattr(cls, '__call__', None), '_eval_results', False)
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def add_desc_features(df): """ Feature engineering with description :param df: :return: """ general = ['elevator', 'hardwood', 'doorman', 'dishwasher', 'no fee', 'reduced fee' 'laundry', 'fitness', 'cat', 'dog', 'roof', 'outdoor space', 'dining', 'internet', 'balcon', 'pool', '...
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import time def _idle_since(device_dict): """Get . Args: device_dict: Device information dictionary Returns: idle_since: Dict of idle since values per port """ # Initialize key variables idle_since = {} # Get all the status of all the Ethernet ports if 'layer1' in d...
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def get_first_series(series_list): """ For each iterable of BIDSFiles get the minimum series number """ return min(series_list, key=lambda x: x.series_num).series_num
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def get_quantized_ints_block(dct_width, quantized_block): """ Store quantized block as integers. The 4 float values of each row are stored as 1 byte each in an int. First row value is stored in least significant byte. Results in a list of 4 ints. """ ints_block = [] for y_index in range(...
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import math def trunc_method(): """math.trunc(obj): Round to the integer nearest to zero.""" class _MinusPi: def __trunc__(self): return -3 return math.trunc(_MinusPi())
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def CommonSymbolsToOrder(symbols, common_symbols): """Returns s -> index for all s in common_symbols.""" result = {} index = 0 for s in symbols: if s not in common_symbols: continue result[s] = index index += 1 return result
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import torch def sdd_bmm_diag_torch(t1, t2): """ Perform bmm and diagonal for sparse x dense -> dense. The diagonalized result is returned in vector tensor. With s_t1.shape = (b, x, s), d_t2.shape = (b, s, x), the output shape is (b, x). This method avoids a temporal (b, x, x) for memory efficiency. ...
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def ip_pool_to_dict(ipp): """Convert an IPPool object to a dict""" return { 'input': ipp.input[0], 'unused': [str(x) for x in ipp.pool.iter_cidrs()], }
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def flat_list(l): """ Convert a nested list to a flat list """ try: return [item for sublist in l for item in sublist] except: return l
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import os def get_data_dirs(data_dir=None): """ Returns the directories in which modl looks for data. This is typically useful for the end-user to check where the data is downloaded and stored. Parameters ---------- data_dir: string, optional Path of the data directory. Used to force...
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import re import itertools def _java_hex(uuid): """Java Mongo Driver transfers byte representation of UUIDs in little endian format. See also https://jira.mongodb.org/browse/JAVA-403 :param uuid: :return: reordered hex sequence """ _hex = re.sub(r'[{}-]', '', uuid) bytes = list(zip(_hex[0:...
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def fibonacci(n): """フィボナッチ数を求める関数 :param n: ``n`` 番目のフィボナッチ数を求める :returns: n番目のフィボナッチ数 :raises: ``ValueError`` when ``n`` is less than 0 """ if n < 0: raise ValueError('nは0以上を指定してください') if n in (0, 1): return n return fibonacci(n - 1) + fibonacci(n - 2)
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def bigint_to_int(mtime): """Convert bytearray to int""" if isinstance(mtime, bytes): return int.from_bytes(mtime, 'little', signed=True) return mtime
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import sys def fix_tag(value): """Make a FIX tag value from string, bytes, or integer.""" if sys.version_info[0] == 2: return bytes(value) if type(value) is bytes: return value if type(value) is str: return value.encode('ASCII') return str(value).encode('ASCII')
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def world_to_basis(active, ob, context): """put world coords of active as basis coords of ob""" local = ob.parent.matrix_world.inverted() @ active.matrix_world P = ob.matrix_basis @ ob.matrix_local.inverted() mat = P @ local return(mat)
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def clean_github_repository(repo): """ get the username/repository from a Github url :param repo:str the Github url of the repository :return: username/repository """ if repo is None: return None repo = repo.replace("http://github.com/", "") \ .replace("https://github.com/", ...
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def str2bool(value): """Returns a boolean reflecting a human-entered string.""" return value.lower() in (u'yes', u'1', u'true', u't', u'y')
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def filter_low_swh(ds): """Remove all records with low significant wave heights.""" return ds['sea_state_30m_significant_wave_height_spectral'] > 1.0
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import os def normaljoin(path, suffix): """ Combine the given path with the suffix, and normalize if necessary to shrink the path to avoid hitting path length limits """ result = os.path.join(path, suffix) if len(result) > 255: result = os.path.normpath(result) return result
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import os def get_executable_path(py_binary_name): """Returns the executable path of a py_binary. This returns the executable path of a py_binary that is in another Bazel target's data dependencies. On Linux/macOS, the path and __file__ has the same root directory. On Windows, bazel builds an .exe file an...
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import numpy def chabrierIMF(mass, log_mode=True, a=1.31357499301): """ Chabrier initial mass function. Put the reference for the formula here. INPUTS: mass: stellar mass (solar masses) log_mode[True]: return number per logarithmic mass range, i.e., dN/dlog(M) a[1.31357499301]...
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def obtenerPendiente(y1,y2,factor): """ Funcion que calcula la pendiente que es usada para la interpolación Recibe un valor y1, un valor y2 y el factor de interpolacion """ return float((y2-y1)/(factor))
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def _unique_retrieval(element_list, elem_identifier, search_identifier): """ Get the text from a ResultSet that is expected to have a length of 1. Parameters ---------- element_list : bs4.element.ResultSet Result of a `findAll` elem_identifier : str An identifier for the element...
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def time_to_knx(timeval, dow=0): """Converts a time and day-of-week to a KNX time object""" knxdata = [0, 0, 0] knxdata[0] = ((dow & 0x07) << 5) + timeval.hour knxdata[1] = timeval.minute knxdata[2] = timeval.second return knxdata
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def prepare_cell_align_type(in_cell_align): """ Basic function that renames the cell alignment string from the ArcGIS Pro UI and makes it dea aws stac query compatible. Parameters ------------- in_cell_align : str The ArcGIS Pro UI string for stac cell alignment. Exampl...
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def play(context): """ The original MPD server resumes from the paused state on ``play`` without arguments. """ return context.core.playback.play().get()
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def pd_reindex_fill(pd, index, keys): """ dataframe resort row with index as presented in keys if key not exist then fill with nan """ pd = pd.pivot_table(index=index) return pd.reindex(keys)
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def zone_clique(x, y, pos_x, pos_y, taille): """ renvoie true les coordonnées (x;y) se trouve dans la plage de la pos_x à la pos_x """ return pos_x <= x <= pos_x+taille and pos_y <= y <= pos_y + taille
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def remove_repeating(diags): """ Removes any diagrams containing a repeating element :param diags: List of labelled diagrams :returns: diags: List of labelled diagtrams, where those with repeating structures are removed... """ diags = [diag for diag in diags if not diag.repeating] return diags
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import csv import statistics def medians(file): """ Given a csv file, find the medians of the categorical attributes for the whole data. params(1): file : string : the name of the file outputs(6): median values for the categorical columns """ fin = open(file, "r") reader = ...
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def update_instance(instance, attrs): """Updates instance with given attrs dict""" for key, value in attrs.items(): setattr(instance, key, value) instance.save() return instance
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def addDataDisk(samweb, mount_point): """ Add a new data disk to the database arguments: mount_point: The mount point for the new disk """ return samweb.postURL('/values/data_disks', {'mountpoint': mount_point}, secure=True, role='*')
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def verify_structure(memlen, itemsize, ndim, shape, strides, offset): """Verify that the parameters represent a valid array within the bounds of the allocated memory: char *mem: start of the physical memory block memlen: length of the physical memory block offset: (char *)buf...
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def get_pretrain_stop_metric(early_stopping_method, pretrain_tasks): """ Get stop_metric, which is used for early stopping. Parameters ------------------- early_stopping_method: str, pretrain_tasks: List[Task] Returns ------------------- stop_metric: str """ if early_s...
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def partitions(): """Fixture to set up test partition information.""" return [ { "device": "sda", "partid": 5, "mountpoint": "/", "size": 1024, "fstype": "ext4", "options": "host_options", }, { "device": "sda", "partid": 6, "mountpoint": "/var", "size": 0, "fstype": "ext4", },...
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import itertools def _seperate(state_sets): """Return the unconflicted and conflicted state. This is different than in the original algorithm, as this defines a key to be conflicted if one of the state sets doesn't have that key. """ unconflicted_state = {} conflicted_state = {} for key i...
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import os def listdict2envdict(listdict): """Dict of lists --> Dict""" for key in listdict: if isinstance(listdict[key], list): listdict[key] = os.path.pathsep.join(listdict[key]) return listdict
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def read_D(filename): """reads an upper triangular matrix with phylogentic distances between species. Returns a dictionary with distances for species names.""" D = {} f = open(filename) cols = f.readline().rstrip().split('\t') for line in f: elems = line.strip().split('\t') ...
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def get(isamAppliance, check_mode=False, force=False): """ Get SNMP Monitoring v1/2 """ return isamAppliance.invoke_get("Get FIPS Settings", "/fips_cfg")
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from pathlib import Path import os from typing import Optional import shutil import sys def get_gdal_dir() -> Path: """ This function finds the base GDAL directory. """ gdal_dir_environ = os.environ.get("GDAL_DIR") gdal_dir: Optional[Path] = None if gdal_dir_environ is not None: gdal_d...
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import tempfile import requests import sys def request_raster_from_url(url, verbose=False): """ returns :class:`tempfile.NamedTemporaryFile` object """ # pylint: disable=R1732 tmpfile = tempfile.NamedTemporaryFile() with open(tmpfile.name, 'wb') as f: response = requests.get(url, stream=True) ...
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import torch def centroids(XW, Y, k, device="cpu"): """ ========================================================================== Return the number of selected genes from the matrix w #----- INPUT XW : (Tensor) X*W Y : (Tensor) the labels k ...
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import torch def corn_labels_from_logits(logits): """ Returns the predicted rank label from logits for a network trained via the CORN loss. Parameters ---------- logits : torch.tensor, shape=(n_examples, n_classes) Torch tensor consisting of logits returned by the neural net. ...
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def tol(): """ The convergence tolerance. """ return 1e-6
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def __get_level_color(level: int) -> tuple[int, int, int]: """ 根据等级获取相应等级颜色 :param level: 等级 :return: (int, int, int): RGB 颜色 """ level_color: dict[int, tuple[int, int, int]] = { 0: (136, 136, 136), 1: (102, 102, 102), 2: (153, 204, 153), 3: (221, 204, 136), ...
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import yaml def read_yml(filepath: str) -> dict: """Load a yml file to memory as dict.""" with open(filepath, 'r') as ymlfile: return dict(yaml.load(ymlfile, Loader=yaml.FullLoader))
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import json def load_json_file(filename): """Load data from a json file.""" data = {} print('Loading file "{}"'.format(filename)) with open(filename, 'r') as infile: data = json.load(infile) return data
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def get_thredds_opendap_link(folder, sub_folder, processing_level, prefix, station_name, year, month): """ :param station_name: string :param folder: string :param sub_folder: string :param processing_level: int :param prefix: string :param year: int :param month: int :return: strin...
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def num_nodes_with_name (root,name,recurse=True): ############################################################################### """ Count nodes with certain name in an XML tree >>> xml = ''' ... <root> ... <a/> ... <sub> ... <a/> ... </sub> ... </root> ... ...
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def binary_freq(data, expression, feature_name=str, analyze=True): """Search data for occurrences of a binary feature as a regex. Args: data (pd.Series): a series with text instances. expression (re.compile): a regex or string to search for. feature_name (str, optional): a name for the...
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def confirm_mirror(uri): """Check if line follows correct sources.list URI""" deb = ('deb', 'deb-src') proto = ('http://', 'ftp://') if (uri and (uri[0] in deb) and (proto[0] in uri[1] or proto[1] in uri[1])): return True return False
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import re def sum_of_integers_in_string(s: str) -> int: """ This function calculates the sum of the integers inside a string """ return sum([int(i) for i in re.findall(r'\d+', s)])
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def collectFromFile(F): """ A simple method to collect all integers from a file and return a list-object :param file: a file on the system, preferably made by makeNewFile(file,list) :return: list of integers """ returnList=[] with open(F,'r') as f: for line in f: returnList.a...
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def divide(left, right): """/""" return left / right
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def add_nonN_count(df, nonN_count_file): """Count number of nonambiguous nucleotides per sequence and add counts to dataframe""" count_dict = {} with open(nonN_count_file, 'r') as f: for line in f: id, count = line.rstrip('\n').split('\t') count_dict[id] = int(count) ...
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from typing import Sequence import re def list_to_patt(lst: Sequence[str], name: str) -> str: """ Create a regex pattern in string form capable of matching each element in a list. Beware of having empty string in lst! Arguments: lst: list of strings for which a regex pattern is to be deter...
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import torch def pad_packed_sequence(inputs): """Returns speechbrain-formatted tensor from packed sequences. Arguments --------- inputs : torch.nn.utils.rnn.PackedSequence An input set of sequences to convert to a tensor. """ outputs, lengths = torch.nn.utils.rnn.pad_packed_sequence( ...
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import struct def parse_linkidandlinkedbehavior(number): """ Returns a link ID index and behavior tuple for the given number. """ number = int(number) byteval = struct.pack('>i', number) (linkid, junk, behavior) = struct.unpack('>bbH', byteval) return (linkid, behavior)
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import time import os import json def echo(event, context): """Echo handler.""" event["ts"] = time.time() event["os.environ"] = dict(os.environ) print(json.dumps(event, indent=4)) return event
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import numpy import warnings def sequentialPrecision(data): """ Calculate percentage sequential precision for each column in *data*. Sequential precision for feature :math:`x` is defined as: :math:`\mathit{{sp(x)}} = \\frac{\sqrt{(\\frac{1}{n-1} \sum_{i=1}^{n-1} (x_{i+1} - x_i)^2)/2}}{\mu_{x}} \\times 100` :par...
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def echo(text): """create job that just prints text""" return ['echo', text]
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def create_cast_date_column_query(dbms: str, date_format: str, date_column: str) -> str: """ Create query that cast date column into yyyy-MM-dd format :param dbms: data warehouse name :param date_format: format of date column :param date_column: name of the column with periods :return: query to...
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def build_geometry(self, sym=1, alpha=0, delta=0): """Build the geometry of the machine Parameters ---------- self : Machine Machine object sym : int Symmetry factor (1= full machine, 2= half of the machine...) alpha : float Angle for rotation [rad] delta : complex ...
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