content
stringlengths
35
416k
sha1
stringlengths
40
40
id
int64
0
710k
def get_min_max(data_column): """Function that gets min and max values from a column Args: data_column (list): list of data in the column Returns: min_value (float): min value in the column max_value (float): max value in the column """ min_index = data_column.idxmin() ...
ed4c947c7168aaadf88a4c31595984e3b1f3fa7d
38,659
def folder_name(unit_name): """ Extract folder name from full unit name Example: Unit 01 - Example unit returns: Unit 01 """ return unit_name.strip()
dda9c5806e147119c2bb4d803790777703b3ec38
38,660
def find_property(n_block, property_type): """Find a property.""" if hasattr(n_block, "properties"): for prop in n_block.properties: if isinstance(prop, property_type): return prop if hasattr(n_block, "bs_properties"): for prop in n_block.bs_properties: ...
4ba57d4734eaa3e3a24b679739b122b500b49580
38,661
def blocks_to_string(blocks): """Convert a list of unencrypted 64-bit blocks to a string""" return ''.join([bytearray([block >> (8 * (7 - i)) & 0xFF for i in range(8)]).decode('utf-8') for block in blocks])
23cb664e22271ba9e9893d31de2b0e12e20df23b
38,662
def format_header(sample, reference, accession, length): """Return a newly formatted header.""" title = f'Pseudo-seq with called substitutions and low coverage masked' return f'>gnl|{accession}|{sample} {title} [assembly_accession={reference}] [length={length}]'
129c0d2c560aa04478cc1943cf7ee39d2e6cda6d
38,663
import os def get_qrels(qrel_file='test_collection/qrels-all.txt'): """ Return qrels in the form qiddoc -> relevance, where qiddoc is qid concat with doc. """ qrels = {} if os.path.exists(qrel_file): with open(qrel_file) as fh: for line in fh: qid, zero,...
1518b1e235e16b04f9f4a2c78ad5737ee03eddc1
38,664
import sys def str_to_bool(s): """ This function converts a string into a boolean value Args: s [str]: string representing tre value Returns: b [bool]: boolean value of string representation """ if s.lower() in ["true", "yes", "y", "t", "1"]: b = True elif ...
58ed36b320be1df3dcededabb63a423444d26860
38,665
def _mock_post_target(request, dynamic_value=None): """Return true if the validated data is correct.""" if request.validated_data == {"testkey": "testvalue"}: valid = True else: valid = False return valid
e5f2de5e1309df65fcd99f607971617b1950aa31
38,666
def checkanswer(response, correct_code, json): """Takes API response and checks if the response is correct. Appends value 'API_status' to answer indicating if response correct or not :param response: requests; response returned by API calls :param correct_code: int, result code for no errors :return...
335f208c25bbd41bdb0ef9a8967f3805679d616c
38,667
import os def get_db_path(relpath): """ Need 4 /'s to specify absolute path for sqlalchemy e.g. sqlite:////fidash/databases/TickerScrape.db Need 3 /'s for relative paths relpath has 3 /'s """ package_dir = os.path.abspath(os.path.dirname(__file__)) db_dir = os.path.join(package_dir, re...
fb430a1dce4a79a29ba29289c8fa73153d3543a5
38,668
def HallucinateNegatives(pos_list): """ Reads a list of positive examples and returns a list of negative examples based on the provided content. @method HallucinateNegatives @param {list} pos_list list of positive examples @return {list} neg_list list of negativ...
d74ccedc410746429eb69ea4e35795eaa5ce8d5f
38,669
import math def get_prime_number(num): """Summary line. エラトステネスの篩を使い、素数を列挙する Args: num (int): 素因数分解を行う数値 Returns: list: numまでの素数リスト """ sequence_list = [i for i in range(2, num + 1)] # 2から入力値までの数列のリスト prime_list = [] # 素数のリスト while True: prime = min(sequence_list) if float(prime) > math.sqrt(num...
696cae5e41b052adfc1af6746ca78fac1dab0aa2
38,670
import re def get_boundingbox(s) -> dict: """ Using the input string (for bbox), parse out the x1, y1, x2, y2 coordinates (i.e. BoundingBox) and return a dictionary containing the left/top/right/bottom values. The response dictionary defaults the left/top/right/bottom to 0. """ bb_rgx = r'''(...
820559484a9f9c3af409d512318ca9370ef8e042
38,671
def searchsorted(arr, N, x): """N is length of arr """ L = 0 R = N-1 done = False m = (L+R)//2 while not done: if arr[m] < x: L = m + 1 elif arr[m] > x: R = m - 1 elif arr[m] == x: done = True m = (L+R)//2 if L>R: ...
3648c0c77bb94b0946ca5a500b5d820b8f5198fd
38,673
def get_column(su, i): """ get the ith column of the sudoku """ return [su[j][i] for j in range(len(su))]
ff35098f14bed4cef938a4a4e6af3d60fb4e7be3
38,674
from typing import Any def is_integer(thing: Any) -> bool: """ A function that returns whether the given value is an integer. Note that this will return ``False`` for the value, ``True``, which is different from normal Python. :param thing: the value to check. :return: ``True`` if the value is a...
f8707dabf95286e03a37240f27517f45f7abd1b2
38,675
import functools def as_root(func): """Task will run from root, sets to self.user.""" @functools.wraps(func) async def wrapper(self, *args, **kwargs): with self._set_user('root'): return await func(self, *args, **kwargs) return wrapper
a81fc2973540e1e77df73c1080fa17889fd3b44e
38,676
import os import argparse def existent(path): """ Check if a path exists :param path: Path to check :return: Existent path as a string """ if not os.path.exists(path): raise argparse.ArgumentTypeError(f"{path} does not exist") return path
45b6daba270715358cde170cc4e664e1d24c6244
38,677
def suffix_array_to_suffix_tree(sa, lcp, text): """ Build suffix tree of the string text given its suffix array suffix_array and LCP array lcp_array. Return the tree as a mapping from a node ID to the list of all outgoing edges of the corresponding node. The edges in the list must be sorted in the a...
036fa9ba6729d3fe04a875b41ae1928be622a955
38,678
def compute_errors(model, s, im): """ Computes errors between each sentence and caption """ return model['f_err'](s, im)
23096ef0f8aaf970c7c102e473d152e1887cca04
38,680
def multiply_operator(word: str, factor: int = 1): """ Multiply the string 'word' for the 'factor' value :param word: string to be multiplied :param factor: it's default value is 1 :return: multiplied string """ return word * factor
505221d2003b8aa1db41abba205d9211f4462aef
38,682
from typing import Any def is_greater_than(value: Any, *, lower_bound: Any = 0) -> bool: """Checks whether the value is greater than the lower_bound :param value: The value to check if is greater than :param lower_bound: The lower bound :return: Whether the value is greater than lower_bound """ ...
5b78579bec610cb83ee01cc0c625b056604e6510
38,684
def place_crop(crop, image, center_x, center_y): """Place the crop in the image at the specified location.""" im_height, im_width = image.shape[:2] crop_height, crop_width = crop.shape[:2] left = center_x - crop_width // 2 right = left + crop_width top = center_y - crop_height // 2 bottom =...
7011b18bde8106cf0cf9b78f8b48dbe3bf574478
38,687
def is_hdfs_path(path): """ Check if a given path is HDFS uri Args: path (str): input path Returns: bool: True if input is a HDFS path, False otherwise >>>is_hdfs_path("/tdk") False >>>is_hdfs_path("hdfs://aa:123/bb/cc") True """ return path.startswith("hdfs://")
62cc9286f91fbad848541275d79d250bf62b4c99
38,690
import pickle def separate_dataset(path_list): """ Read attack data from a list of paths """ cls_dict = {i:[] for i in range(10)} for path in path_list: with open(path, 'rb') as f: data = pickle.load(f) for p in data: label, logits, in_out = p ...
aad16913ebb7e6b39b3c1cac7d4694a7c120def7
38,692
def _check_bal_args(cash, bank, reason) -> bool: """Checks types and content of arguments for edit and set balance methods""" if cash is None and bank is None: raise ValueError('An amount or "Infinity" must be specified for either cash or bank') for arg in (d := {'cash': cash, 'bank': bank}): ...
64f0f99485902a6d1f7308722067659f81b3562f
38,693
def _inverse_move(move): """Invert a move""" if '\'' in move: return move.strip('\'') return move+'\''
963277482644f1e7e96a5483cc5fb3f5f90c4088
38,694
def err_func(p,x,y,yerr,function): """ Difference between data and a model """ #print "p is",type(p),"of length",len(p) #print "x is",type(x),"of length",len(x) #print "y is",type(y),"of length",len(y) fit = function(x,p) #print "fit is",type(fit),"of length",len(fit) return (y - function(x,p))/yerr**...
462748d5ddbd91c81e5b24ff8da976ea1e1d0409
38,695
def say(number): """Returns a numbers 'say' equivalent.""" numbers = [] spans = [] i = 0 repeats = 1 while i < len(number) - 1: if number[i] == number[i + 1]: repeats += 1 else: numbers.append(number[i]) spans.append(str(repeats)) ...
7664ca5dff35efd50f291a42e4b9428240daa036
38,696
def dotProduct(vector1, vector2): """Caclulate and return dot product of vectors. Calculate and return the dot product (inner product) of the two vectors (Python dict type). :param vector1: vector 1 :type vector1: dict :param vector2: vector 2 :type vector2: dict :returns: dot product ...
c1e136f308ce6743bd90b42af87b09ef569eaffc
38,697
import random def _gsa_update_velocity(velocity, acceleration): """Stochastically update velocity given acceleration. In GSA paper, velocity is v_i, acceleration is a_i """ # The GSA algorithm specifies that the new velocity for each dimension # is a sum of a random fraction of its current veloc...
14110c14a54450d0ea8f42d47c90bf56d0b8d3f7
38,698
import copy def agent_to_json(agent, trace_aware=False): """ Converts agent to JSON string :param agent: the agent :param trace_aware: include traces :return: json string with x, y, direction, speed, active """ x, y = agent.pos agent_json = { "x": x, "y": y, "di...
27cb0e8ff5471a89d408d586e9893b73006db985
38,699
def _parseAndSum(line, numCommas, toggle): """Given a line from an excel csv file, add all the numbers after comma1 before numCommas+1. Example: if numCommas = 30, then summate all numbers between comma 1 and comma 31 If activ=True, than Return summation""" Sum = 0 track = 0 while trac...
ca1eaee0bc1c489823f99ce3e7d5c60239caacc3
38,701
def extract_cands(mystr,candd): """ extract candidate names from _-separated string, increment dict entries """ for c in mystr.split("_"): if c in candd.keys(): candd[c] += 1 else: candd[c] = 1 return candd
1add9487d8939c3fa24cf2568c4916ad72c4381a
38,702
def clean_postcode(postcode): """This function takes an string and returns a string of 5 digit postcode in the boston_massachusetts.osm""" # delete -XXXX after the five digit postcode if "-" in postcode: return postcode.split("-")[0] # delete MA in the postcodes elif "MA" in postcode: ...
7eb23eef09c3e3cba0ba839ac63bb40f28f45860
38,703
def try_get(src, getter, expected_type=None): """Getter for Object with type checking. Args: src (object): Object for getter. getter (lambda): Lambda expression for getting item from Object. expected_type (type, optional): Expected type from the getter. Defaults to None. Returns: ...
7d54542d70df933ecaf40c3bd8df58a71fa0f5b1
38,704
def is_pure_list(arg): """ is it a list or tuple? """ return isinstance(arg, (list, tuple))
810d465287ed15972504c6183db5be343c639ec6
38,706
def GetArithmeticMembers(code, operator): """Get members and operators used in equation.""" op_list = [] arg_list = [] for i in code: op = " ".join(i.split()[:-1]) arg = i.split()[-1] if op in operator.keys(): arg_list.append(arg) op_list.append(operator[...
31ea7fdb50290c3cb292232f6b064c919d5b61ba
38,708
def perimeter(n): """.""" p = 1 a = 0 b = 1 for i in range(n): p += a + b c = a a = b b += c return p * 4
42db3e48d3623b9eaf6fa9398d9695f9bb922fd4
38,709
def to_sentiment(rating) -> int: """ :param rating: rating of the review :return: sentiment of the review """ rating = int(rating) if rating <= 2: return 0 elif rating == 3: return 1 else: return 2
a0d5e1d35979a0984308f2571006331e0932ac78
38,710
import struct import socket import binascii def compact(ip, port, ascii=False): """ Compact IP address and port. >>> compact('127.0.0.1', 6667, ascii=True) '7f0000011a0b' >>> compact('127.0.0.1', 6667) == '7f0000011a0b'.decode('hex') True """ compacted = struct.pack('!4sH', socket.inet_aton(ip), port) retur...
51aa9d2ece55fce558855763e7c4a965d4d800cb
38,712
def return_occurrences(pattern, bwt, starts, occ_counts_before): """ Find occurrences of a string pattern in a text, given only Burrows-Wheeler Transform, bwt, of the text, and additional information we get from the preprocessing stage - starts and occ_counts_before. """ dim = len(bwt) top ...
4a529e0b49e91fb0714846ae12d38a6a193aade1
38,715
def get_number_of_packages_maintained_by_maintainers(pypi_profiles): """Retrieve number of PyPI packages maintained by each maintainer""" num_packages = [] # Loop thru beautiful-souped maintainer list for soup in pypi_profiles["maintainers_data"]: package_count_elements = soup.findAll("div", {...
e669ba16626051af64e8740580958b82ac5156c2
38,716
import numpy import math def angle_between(dest, base=(1,0,0)): """Returns the angle in positive degrees from base to dest in the xy-plane. dest: A vector base: A vector Returns: Angle in degrees [0, 360) """ target = dest[0], dest[1] p_axis = -base[1], base[0] b_axis = ...
42d3bac7a039d7700004be0c8bf2edea208d8a06
38,717
def vectorize(data): """ data needs to be a row """ # print(data,type(data)) vector=[] #sip temp=[int(ip) for ip in data['sip'].split('.')] for e in temp: vector.append(e) #sport vector.append(int(data['sport'])) #dip temp=[int(ip) for ip in data['dip'].split('.')...
e42fe0311d751a9b70ec835a4971926335bcd531
38,719
import re def remove_tags_and_content(s, tag): """Removes all of the specified tags from the string including their children. Greedily finds an opening and closing of specified tag and removes all content between the two. **Note**: Not intended to remove multiple sibling nodes with content in betwee...
9bfecaa082e9bea406b75bde46edbe32b1f4149a
38,720
def get_A_door_180_f_i(): """階層fにおける単位住戸iの主開口方位から時計回りに180°の方向に面した玄関ドア面積…………式(13c) Args: Returns: float: 階層fにおける単位住戸iの主開口方位から時計回りに180°の方向に面した玄関ドア面積(m2) """ return 1.6
c38d348ebfb216b05e1402823a94806d34712ea6
38,721
def snake_to_camel(text: str) -> str: """ Convert snake_case to CamelCase """ data = [ i.capitalize() for i in text.split("_") ] return "".join(data)
fbfd0a3de9f659559a1f3d2b7ccedc5c8bcc173f
38,722
def calc_f1(precision, recall): """ Compute F1 metric from the score dictionary inputs: precision float with the precision value recall float with the recall value output: f1 float with the F1 value """ f1 = (2 * precision * recall) / (precision + recall)...
7dd261deb9d5325c05986b9498b80d01066b69b1
38,723
def check_intents(test_dict, observed_intents): """ Check intents """ total_errors = 0 if ( test_dict.get("predicted_intent") and test_dict["predicted_intent"] not in observed_intents ): total_errors += 1 return total_errors
4211dd5abd96e489375a5688a6cd1cb030614a3c
38,724
import time def program_timer(func): """Print the runtime of the decorated function""" def wrapper_timer(*args, **kwargs): start_time = time.perf_counter() # 1 value = func(*args, **kwargs) end_time = time.perf_counter() # 2 run_time = end_time - start_time # 3 # co...
2832963859fea68c2e7120f3777be952e54c33f8
38,725
import binascii def mac_str_to_bytes(mac): """Converts string representation of a MAC address to bytes""" if isinstance(mac, bytes): return mac if not isinstance(mac, str): raise TypeError('MAC address given must be a string') mac = mac.replace(':', '').replace('-', '').replace('.', ''...
ab6952595dcf193908b529f29edbcba540aa4310
38,726
import json def read_config(filename: str) -> dict: """ Reads a JSON config file into a dict """ with open(filename) as file: config = json.load(file) return config
9c4ed49e0a70e568effaec1315a6aeefdad987f2
38,727
def div(a: int, b: int) -> float: """ Division, mind the zero! >>> div(10, 2) 5.0 :param a: An integer :param b: Another integer :return: the result of dividing a and b :raises: ZeroDivisionError: if parameter b is 0 """ return a / b
9c1af2374b7b8f5c8b9d6bcfcc5e25c3099e2634
38,728
def make_list(iterable): """ Makes a list from given ``iterable``. But won't create new one if ``iterable`` is a :py:func:`list` or :py:func:`tuple` itself. :param Iterable iterable: Some iterable entity we need to convert into :py:func:`list`. """ if isinstance(it...
37116d2716e59ce57b45aadbc05b7c2bc5dddcd2
38,729
def get_filter_count(layer_idx, filters_root): """ At each downsampling step we double the number of feature channels. """ return 2 ** layer_idx * filters_root
0d712d6fd2441297f6ab0730d4b9235f9778022d
38,730
def _GenerateUserPayload(users): """Generate the user payload data for all users. I could just pass through all the user's properties here, but that would expose the private key we have in the datastore along with various other user data, so I'm explicitly limiting what we show to an email and key for modify...
b193991ca67879f0eab683882b50f337bbb84942
38,732
def add_traffic_column(df): """Add a TRAFFIC column that is the sum of the Entries and Exits for a station Args: df (pandas.DataFrame): The original pandas dataframe Returns: df (pandas.DataFrame): The pandas dataframe with the TRAFFIC column and TIMEFRAME_ENTRIES ...
b916144b26e9985554009ab7e3cd446d09ff6b52
38,733
import time def get_runtime_s(job): """Returns job runtime in milliseconds.""" scrapystats = job.metadata.get("scrapystats") finished_time = job.metadata.get("finished_time") start_time = scrapystats.get("start_time") if finished_time: return finished_time - start_time return int(rou...
4cd353b078de50c6e4f54ce27bcf620c7212b9bb
38,734
import os def load_manifest(upath): """ Return the manifest as a dictionary """ manifest_path = os.path.join(upath, 'images', 'manifest.txt') print("### Reading manifest from {}...".format(manifest_path)) manifest_contents = open(manifest_path).read() manifest = {} for line in manifest...
a70037a097a8068bf03d489956e05ac96a0d2256
38,735
import torch def get_output_dim(model, pooling_type="gem"): """Dinamically compute the output size of a model. """ output_dim = model(torch.ones([2, 3, 224, 224])).shape[1] if pooling_type == "netvlad": output_dim *= 64 # NetVLAD layer has 64x bigger output dimensions return output_dim
d08f54fef8923ac5132af9aab80a080b9bd6c0ee
38,738
def compute_center(box): """ :param box: (box[0], box[1]) is the left low conner coordinate; (box[2], box[3]) is the right top conner coordinate. :return: """ x = (box[0] + box[2]) / 2.0 y = (box[1] + box[3]) / 2.0 return x, y
bf4fb6e8a715d8a51e1f756228e701b58851e803
38,740
def merge_schemes(alist, novalue=True): """Merges schemes of list of objects and generates final data schema""" if len(alist) == 0: return None obj = alist[0] okeys = obj.keys() for item in alist[1:]: for k in item.keys(): # print(obj[k]['type']) if...
1320e0e4bca4d4d619e66fcee19475f5be0cc5c8
38,741
def extrair_palavras(frases_com_stemmer): """Função que unifica todas as palavras do conjunto de dados em uma única lista. Args: frases_com_stemmer: Frases com o Stemmer já aplicados. Returns: todas_palavras: lista com todas as palavras. """ todas_palavras = [] for (palavras, cla...
c2f8d3ddc136d6ffcac02d93db28ac8dd54df143
38,743
def get_attribute(node, attr, default=None): """Return a requested attribute from a graph node. Construction (CX) graphs contain other CX objects but also integers (Text-Fabric node numbers). This method enables attribute calls on CX objects without erroring out on integer objects. Arg...
99db4750f78035630aeea2afeabd9708190ce075
38,744
from collections import namedtuple from ipaddress import ip_address, ip_network def validate(request, validation_data): """Check payload from GitHub: the origin IP must be genuine; the repo owner and title must be valid. :param request: `CherryPy request <http://docs.cherrypy.org/en/latest/pkg/cherrypy.html#...
bfccdefca2bac6fa40dfe2c079b73980c32b1a7b
38,745
def value_for_key(membersuite_object_data, key): """Return the value for `key` of membersuite_object_data. """ key_value_dicts = { d['Key']: d['Value'] for d in membersuite_object_data["Fields"]["KeyValueOfstringanyType"]} return key_value_dicts[key]
ef35afa306c7ba9e90060a4f143ed0ae87a831bb
38,746
def intersection(A,B): """intersection of two lists """ return filter(lambda x: x in B,A)
87b02ffedb78e033714c11186e097b13c4425fb0
38,747
def v9_add(*matrices): """Add corresponding numbers in given 2-D matrices. Using the - sum - function so sum over the row values. """ combined = [] for rows in zip(*matrices): row = [] for values in zip(*rows): row.append(sum(values)) combined.append(row) ret...
50960b0b3efae938e927b9b8968933018dfe370f
38,748
import re def clean_sentence(sentence): """Remove extra white space from `sentence`.""" return re.sub(r'\s+', ' ', sentence)
56e69adcb34f9b982eb12c396dc11727a150a7a8
38,750
def collapse_epitopes(epitopes): """ Inverts the epitope map and merges epitopes with enst and pos added. """ output_epitopes = {} for k, v in epitopes.items(): enst, ensg, name, pos, chrom, genome_pos, fasta_name = k #alt_epitope, wt_epitope = v if v in output_epitopes: ...
28c9e8671a66b476f153ef108e19b0bb6806d23c
38,751
from typing import Any def as_text(value: Any) -> str: """ Convert the given value to a string. :py:obj:`None` is converted to ``''``. :param value: The value to convert to a string. :rtype: .. versionchanged:: 0.8.0 Moved from :mod:`domdf_python_tools.utils`. """ if value is None: return '' return ...
5f246d8b291fcaa312fb8340bf3d0a60040df297
38,752
def _validate_str_with_equals(input_string): """ make sure an input string is of the format {0}={1} {2}={3} {4}={5} ... Some software programs put spaces after the equals sign and that's not cool. So we make the string into a readable format :param input_string: input string from an edi file :...
f137ddabfea9671e693373edd43505e7955c2510
38,753
def get_gwf_row_color(conf_list, id): """Get gwf row color """ if id == -1: return '"black"' return '"' + conf_list[id].color_text + '"'
c778ef50749a2bca0b38ab402721c4f55ed9e8e1
38,754
import re def remove_tags(html_str: str, tags): """ removes a list of tags and their content from the html """ if isinstance(tags, str): tags = [tags] if isinstance(tags, list): for tag in tags: if tag == 'js' or tag == 'javascript': scripts = re.compi...
cf7cbd068e73eb90dcbc89e90e140c326fe0e273
38,755
def make_select( name, selected, data, jscallback=None, cssclass=None, multiple=False, showvalue=True, ) -> str: """Generate a HTML select. The trick here is what `data` looks like. The basic form is a dict. You can get `optgroup`s by having the dictionary keys be additional ...
7d47b562d3c3bd58f7f946032207c1a32dc3f04b
38,756
def response(response_code, schema=None, description=None): """A decorator that add swagger response""" def decorator(handler): responses = getattr(handler, 'swagger_responses', {}) responses[response_code] = {} if schema is not None: responses[response_code]['schema'] = sc...
13960bd37158a13eb36ab46f4170a1fca5d4b7c2
38,757
def create_file_name(path, start): """Create the name of rst file. Example: resources.libraries.python.honeycomb.rst tests.perf.rst :param path: Path to a module to be documented. :param start: The first directory in path which is used in the file name. :type path: str :type start: str...
398a5e7749cc3f7f47a068dd5859b28fb0ffe98d
38,760
import re def get_compound_id(microstate_id): """ Extract the compound ID from a microstate ID (which includes a wart suffix like '_1', '_2') Parameters ---------- microstate_id : str The microstate ID, which includes a wart suffix (e.g. 'MAT-POS-8a69d52e-7_1') Returns ------- ...
6260389236ec579e57f9deaa4d7b41e34b45bcc2
38,761
import inspect def get_methods_defined_in_class(cls): """ Get all functions defined in a given class. This includes all non-inherited methods, static methods and class methods. Args: cls (Type): Class for lookup Returns: List[Tuple[str, Union[FunctionType, MethodType]]] """ ...
82974e60ed907a998f736bec0ab7cd28c1f93fdd
38,762
def initial_graph_properties(rlist, qlist): """Initial processing of sequence names for network construction. Args: rlist (list) List of reference sequence labels qlist (list) List of query sequence labels Returns: vertex_labels (list) Ordere...
e65a81a421c02bb2a4faa679660641f7550c5dc7
38,763
import sys def forceUnicode(var, encoding=None): """If not already unicode, decode it""" if sys.version_info < (3,0): if isinstance(var, unicode): ret = var elif isinstance(var, str): if encoding: ret = var.decode(encoding) else: ...
d60b2a43055e87cc595cb81026eda91ba7186c73
38,764
def regex_for_range(min,max): """A recursive function to generate a regular expression that matches any number in the range between min and max inclusive. Usage / doctests: >>> regex_for_range(13,57) '4[0-9]|3[0-9]|2[0-9]|1[3-9]|5[0-7]' >>> regex_for_range(1983,2011) '200[0-9]|199[0-9]|198[...
704fe6a50c62c91472c684d5652d6b8cd385dde1
38,765
import tempfile def write_temp_return_filename(data): """ Write out data to a temporary file and return that file's name. This file will need to be deleted. :param data: str: data to be written to a file :return: str: temp filename we just created """ file = tempfile.NamedTemporaryFile(del...
ef34cd2328cf450c0cbf603ca07295e858da7861
38,767
from typing import List import os def get_all_files_recursively_from_directory(dirname: str) -> List[str]: """ Get all files recursively from a directory. :param dirname: The directory name. :type dirname: str :return: The list of founded files. :rtype: List[str] """ files = [] fo...
03a7a77cd28a6a41f9f8f2686bf6f479d572f767
38,768
import inspect def protected_method(func): """Decorator for making an instance method private.""" def func_wrapper(*args, **kwargs): """Decorator wrapper function.""" outer_frame = inspect.stack()[1][0] caller = inspect.getmro(outer_frame.f_locals['self'].__class__)[:-1] targ...
5f23a90c5ba536a5ed267bf3ae720b32fd28ad89
38,770
def is_isomorphic(word_1: str, word_2: str): """ Example: Input: s = "egg", t = "add" Output: true @param word_1: <str> word 1 @param word_2: <str> word 2 @return: <bool> whether two words are isomorphic """ return len(set(word_1)) == len(set(word_2)) == len(set(zip(word_1, word_2)))
fd5bbc94ccd80d26d02fc1fe6e55ce7c6ad4617c
38,773
def same_base_index(a, b): """Check if the base parts of two index names are the same.""" return a.split("_")[:-1] == b.split("_")[:-1]
6186230a9cb982be4cd113c2e8098e8ab472159b
38,776
import re def quote_type_string(type_string: str) -> str: """Quotes a type representation for use in messages.""" no_quote_regex = r'^<(tuple|union): \d+ items>$' if (type_string in ['Module', 'overloaded function', '<nothing>', '<deleted>'] or re.match(no_quote_regex, type_string) is not None...
63f50cf7a986354cc3cddd947ff9830012659d81
38,777
def reddit_user(reddit_factories): """Override the user fixture to use reddit_factories""" return reddit_factories.user("contributor")
0d5ff93a36ad06c67bc9daf7fada52d43b595b80
38,778
def split_by_pos(data_input: str) -> list: """Split a string data_input by position""" return list(data_input)
5e8070047dc4b8fc3db4210ddfa99f258ab1c25a
38,779
def season(): """ """ return 2016
9e838fb1ed5efad572b1abb62284c6e150ff36f1
38,780
import uuid def make_uuid(df, name='uuid'): """ Creates a list of uuids with the same length as the dataframe """ uuids = [uuid.uuid4().hex for _ in range(len(df))] return uuids
904dab2ea1dab3b53974277a1f37fa30f26e3e61
38,781
def list_to_streamdict(list): """creates a dictionary out of a list assuming the list is written in kwarg, arg,... the dictionary will be written as {kwarg:[arg], }""" dictio = {} for i in range(1,len(list),2): list[i] = [list[i]] print(list[i]) # print("List[1]", list[1]) ...
aaed01c57ad3471807bebf2136c4b006e7100eed
38,782
def get_collection_sizes(net, bus_size=1.0, ext_grid_size=1.0, trafo_size=1.0, load_size=1.0, sgen_size=1.0, switch_size=2.0, switch_distance=1.0): """ Calculates the size for most collection types according to the distance between min and max geocoord so that the collections fit th...
06abcef3e8fe7833820057952133c6fa570b36d5
38,783
import glob import re def get_all_pod_uids(): """Return mapping of pid to pod uid""" pod_uids = {} for cgroup_file in glob.glob("/proc/[0-9]*/cgroup"): pid = int(cgroup_file.split("/")[-2]) try: with open(cgroup_file) as f: cgroups = f.read() except F...
0755fece29fcf65f05f5c22d5259147f3866fe85
38,784
def constant_density_2D(R, constant): """ return a constant value at every input r Parameters ---------- R: [Mpc] distance from the center constant: multiplicative constant Returns ------- constant """ return constant
8a0f51ba8b296e6b81270790daa5e69d71f808d7
38,785
import shelve def read_population_assignation_cp(namefile): """Read pre-computed population assignation.""" db = shelve.open(namefile) cps = db['cps'] population_value = db['population_value'] methodvalues = db['methodvalues'] db.close() return cps, population_value, methodvalues
9281d78d3c21e8d340c38b1060d616f09b0e312b
38,787
import random def sample_coal(k, n): """ Returns a sample coalescent time for 'k' individuals in a population 'n' """ # k choose 2 k2 = k * (k-1) / 2 k2n = k2 / n return random.expovariate(k2n)
4069830905f83b28b60e2fa5e547ab8ba0f81e9a
38,788
def cached(fn): """ Cache decorator. This decorator simply uses ``*args`` as lookup key for cache dict. If you are using python3, use functools.lru_cache() instead. """ cache = {} def cached_decorator(*args, **kwargs): if args in cache: return cache[args] val =...
b73dd99a2e29077adbee51c8a79f12832badf37c
38,789