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def xml_dict_to_string(item): """The nested XML dictionary to a string.""" # Sort the keys. keys = list(item.keys()) keys.sort() # Return the keys and the values. string = '' for key in keys: if key == '': string += item[key] else: # Add content. ...
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from numpy import floor from numpy.random import rand def bootstrap_resample(X, size=None): """ Bootstrap resample an array_like data Input parameters: ---------------- X: array_like input data to resample size: int, optional ...
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import numpy def dtype_limits(dtype): """Attempt to determine the min and max values of a datatype. :arg dtype: A numpy datatype. :returns: a 2-tuple of min, max :raises ValueError: If numeric limits could not be determined. """ try: info = numpy.finfo(dtype) except ValueError: ...
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import re def setup_madam(args): """Create a Madam parameter dictionary. Initialize the Madam parameters from the command line arguments. """ pars = {} cross = args.nside // 2 submap = args.nside_submap if submap > args.nside: submap = args.nside pars["temperature_only"] = F...
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def velocity_from_transition_matrix(P, x, deltat): """Estimate velocity field from transition matrix (i.e. compute expected displacements) :param P: transition matrix :param x: input data -- `N` points of `M` dimensions in the form of a matrix with dimensions `(N, M)` :param deltat: timestep for wh...
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def get_cheat_sheet(cheat_sheet): """converts a cheat sheet from .json to string to display Parameters ---------- :param dictionary cheat_sheet: dictionary that stores the content of given cheat sheet. :return: a str representation of a cheat sheet. """ sheet = [] separator = '\n' ...
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def get_holding_data(holdings, stimulus_data, total_duration, default_holding): """Extract holding data from StepProtocol json dict and add amplitude to a holding list. Args: holdings (list): list of holding amplitudes (nA) to be updated stimulus_data (dict): stimulus dict from protocol json fi...
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def classbook_record1_uuid(): """Return classbook record1 uuid""" return "C1A55800-0000-0000-0000-000000000001"
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def my_newton(func,x0,fprime,tol=1e-2): """ re-implementation of scipy version that uses half the calls! """ p0 = x0 for i in range(30): fval = func(x0) if fval == 0: return x0,True gval = fprime(x0) delt = fval/gval x0 -= delt if (abs(delt) < tol): ...
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def has_errors(build): """Checks if there are errors present. Args: build: the whole build object Returns: True if has errors, else False """ return "errors" in build and len(build["errors"])
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def _segment_less_than(a: str, b: str) -> bool: """Return True if a is logically less that b.""" max_len = max(len(a), len(b)) return a.rjust(max_len) < b.rjust(max_len)
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def translate_machine_name(n): """ """ return n
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import shlex def get_ocropy_param(ocropy_profile:dict)->dict: """ Get all user-specific parameters from the ocropy-profile, but only for "ocropus-nlbin","ocropus-gpageseg","ocropus-rpred","ocropus-hocr". :param ocropy_profile: :return: dict with parameters and values which are different to the def...
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def fatorial(num=1, show=False): """ Realiza o fatorial de um número digitado pelo usuário. :param num: O número a ser calculado. :param show: (Opcional) Mostra ou não o processo da conta. :return: O valor do Fatorial de um número n. """ n = 1 for f in range(num, 0, -1): if show:...
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def divide2(a, b): """use ``try... except PossibleException... except`` clause. List all possible exception you can imagine, and leave other unpredictable exception to ``except clause``. """ try: return a * 1.0 / b except ZeroDivisionError: raise ValueError("Zero division Error!...
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import argparse import pathlib import os import subprocess import tempfile import shutil import textwrap def main() -> int: """Execute the main routine.""" parser = argparse.ArgumentParser() parser.add_argument("--release_dir", help="directory where to put the release", required=True) args = parser.pa...
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import numpy as np def computeAUC(rates): """Computes the Area Under Curve (AUC) measure from (recall, precision) values.""" recall, precision = zip(*sorted(rates)) return np.trapz(precision, x=recall)
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import math def summarize_performance_metrics(performance_metrics): """ A function that averages all the folds if they exist. Parameters ---------- performance_metrics: dict A dictionary containing the fold, metrics targets and values from evaluation. """ sumarized_performance_met...
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from pathlib import Path def get_theme_base_dirs_from_settings(theme_base_dirs=None): """ Return base directories that contains all the themes. Example: >> get_theme_base_dirs_from_settings('/edx/app/ecommerce/ecommerce/themes') ['/edx/app/ecommerce/ecommerce/themes'] Args: t...
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def partition_data(df, validation_size): """ validation_size: float: maximum portion of data per language size of the validation set returns: a partition of the data into training and validation """ def lang_sample(frame): assert frame.shape[0] >= 10 return frame.sample(frac=1 - v...
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import re def get_transcripts(transcript_file): """ Parses FusionInspector transcript file and returns dictionary of sequences :param str transcript_file: path to transcript FASTA :return: de novo assembled transcripts :rtype: dict """ with open(transcript_file, 'r') as fa: transc...
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import argparse from pathlib import Path def _get_parsed_args(args=None) -> argparse.Namespace: """Return namespace of parsed command-line arguments.""" p = argparse.ArgumentParser( description=__doc__, formatter_class=argparse.RawDescriptionHelpFormatter, ) p.add_argument("--dump-path...
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import json def fetch_credentials(service_name, creds_file="service-credentials.json"): """Fetch credentials for cloud services from file. Params ====== - service_name: a Watson service name, e.g. "discovery" or "conversation" - creds_file: file containing credentials in JSON format ...
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def Quoted(s): """Return the string s within quotes.""" return '"' + str(s) + '"'
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def get_user_choice(): """ Let users know what they can do """ print("\n[1] See Top 50 Airing Anime") print("[2] See Top 50 Upcoming Anime") print("[3] See Anime Recommendations") print("[4] Search for Anime") print("[q] Quit") return input("\n[?] Press any key to continue: ")
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import csv import sys def save_csv(tabl): """Сохраняем список в csv файл""" FNAME = './data/' + ('table_pvp.csv' if tabl[0] else 'table_pve.csv') ans = 1 with open(FNAME, 'a', newline='', encoding='utf-8') as csvfile: f = csv.writer(csvfile, delimiter=';') try: f.writerow((...
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def sum_and_avg(a, b, message="sum and average", *args, **kwargs): """ 说明文档:求和 均值函数 a: 位置参数 b: 位置参数 message="sum and average": 默认参数 *args: 可变参数,类型:tuple **kwargs: 可变关键字参数,类型:dict """ print(message) print(args, type(args), len(args)) print(kwargs, type(kwargs), len(kwargs)) ...
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import functools def start_connection(func): """Start a connection if connection is None.""" @functools.wraps(func) async def wrapper(self, query, connection=None): if connection: return await func(self, query=query, connection=connection) else: async with self.eng...
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def required_index(a): """ Helper function to take a list of index lists and return whether it needs to be included as an index in demultiplexing. """ return len(set(tuple(a_i) for a_i in a)) != 1
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def quadEquationSqrt(a: int=1, b: int=2, c: int=3) -> None: """ This function prints the `roots` of a `Quadratic Equation` whose `Coefficient` is specified by the `User`. Returns `None` if bound to a variable. Args: This function takes three arguments in total. `a: int` :The literal of this argument s...
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def communication_filter(quest, difficulty): """ Hides a number of steps in the quest equal to the difficulty setting 2 would hide 50%, one every other step. 3 would hide two steps between each revealed step. """ length = len(quest) revealed = list(range(0,length,difficulty)) # if it starts at 0: ...
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def krueger12_eta(lpc): """Ratio of 56Ni to total iron-peak yield from Krueger+ 2012 Fitting formula for K12 central density results. Based on looking at iron-peak yields from Khokhlov, Mueller & Hoflich 1993, I assign a flat prior eta = 0.9 below a central density of 1e+9 g/cm^3. Could probably d...
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def default_activation_threshold(spec): """ Helper method to use the default balance activation threshold for state creation for tests. Usage: `@with_custom_state(threshold_fn=default_activation_threshold, ...)` """ return spec.MAX_EFFECTIVE_BALANCE
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import numpy as np def get_sorted_notes(ClusterInfo, target_note_) -> str: """ Get sequence of notes based on its median duration target_note_ : all possible notes that can appear in a session sung by that bird target_note_ can be different from actual syllable that the bird sang since the bird may dr...
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import re def list2str(datas): """ 列表转字符串 :param datas: [1, 2] :return: (1, 2) """ data_str = str(tuple(datas)) data_str = re.sub(",\)$", ")", data_str) return data_str
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import math def calculateFuelForMass(mass): """calculate the fuel for a given mass""" return math.floor(int(mass) / 3) - 2
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import collections def dict_to_namedtuple_spec(dictionary): """Coverts non-nested dictionary to namedtuple""" return collections.namedtuple("model_specification", dictionary.keys())( **dictionary )
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import os import subprocess import click import sys def find_shell_path(shell_name="bash"): """Finds out system's bash interpreter path.""" if not os.name == "nt": cmd = ["which", "-a", shell_name] else: cmd = ["where", shell_name] try: c = subprocess.run( cmd, ...
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def check_lunches(lunches_dict): """Checks if every restaurant posted their lunch already.""" if all(lunches_dict.values()): return True else: return False
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import hashlib def compute_password_digest(message): """Helper method to compute the message digest for the given string. """ return hashlib.sha224(message).hexdigest()
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def compose(x, *funcs): """ takes an initial value and a list of functions and composes those functions on the initial value :param x: object to call the composed functions on :param funcs: list of functions to compose :return: final output of composition """ for func in funcs: x = f...
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def _get_updated_tags(update_function, *args): """Get an updated list of tags. :param update_function: The function used to update tags. :param args: (The resource :py:class:`dict` to get updated tags for., The tags :py:class:`list` to update ``resource`` with.) :rtype: :py:class:`list` If the tag...
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import operator def select_survivors(snakes, num_survivors, survival_thresh): """ Picks the survivors that stay for next generation of snakes params: snakes: list, current generation of snakes of class Snake num_survivors: int, how many survivors there should be survival_thresh: float,...
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from typing import List def sort_entries(entries: List) -> List: """Sort entries, directories first, files second.""" entries.sort(key=lambda e: f"{e['type']} {e['name']}") return entries
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def f_factory(epoch, shrinkage, learner, g): """Generate f inplace function.""" return lambda vec: g[epoch](vec) + shrinkage * learner.predict(vec)
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def _calculate_rydeberg_spectra(_n1: int, _n2: int, _R: float) -> float: """Calculates the spectra from the Rydeberg formula. Decorators: nb.njit Arguments: _n1 {int} -- First principal quantum number. _n2 {int} -- Second principal quantum number. _R {float} -- Rydeberg con...
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def assertion_error(): """ A decorator to use in comparing assert @param operator: The operator used for the assert """ def decorator(func): def wrapper(self, *args, **kwargs): try: return func(self, *args, **kwargs) except Exception as e: ...
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def get_boundary_polyhedra(polyhedra, boundary_x=0, boundary_width=0.5, verbose=True, z_lim=[0, 100]): """ get indices of polyhedra at boundary (assumed to be parallel to x-axis) Parameter --------- polyhedra: dict dictionary of all polyhedra boundary_x: float position of bounda...
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def assign_node_names(G, parcellation): """ Modify nodal attribute "name" for nodes of G, inplace. Parameters ---------- G : :class:`networkx.Graph` parcellation : list ``parcellation[i]`` is the name of node ``i`` in ``G`` Returns ------- :class:`networkx.Graph` gr...
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def to_var(tensor, use_cuda, requires_grad=True): """Transform tensor into variable and transfer to GPU depending on flag""" if requires_grad: tensor.requires_grad_() if use_cuda: tensor = tensor.cuda() return tensor
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import sys import os def data_location(app_name: str) -> str: """Return path to application data folder. Args: app_name (str): name of application Returns: str: path to folder """ if sys.platform == 'win32': path = os.path.join(os.environ['APPDATA'], app_name) else: ...
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import os def find_filename_iteratively(start, file_path_suffix, dir_path): """Iterates through files in the base path directory to find files. :param start: String with starting folder prefix. :param file_path_suffix: String with file end/suffix. :param dir_path: String with file directory path. ...
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def reduce_schema_error(message: str) -> str: """Reduce the error schema output.""" end_of_message_index = message.find(":", message.find("Failed validating")) if end_of_message_index != -1: return message[:end_of_message_index] return message
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def floodFill(points, startx, starty): """ Returns a set of the (x, y) points of a filled in area. `points` is an iterable of (x, y) tuples of an arbitrary shape. `startx` and `starty` mark the starting point (likely inside the arbitrary shape) to begin filling from. >>> drawPoints(polygon(5,...
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import subprocess def cli(): """ Start the docker container :return: Subprocess call result """ cmd = "docker-compose up -d" return subprocess.call(cmd, shell=True)
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def _calc_variance(df, lat_col, lon_col, mean_lat, mean_lon): """Calculate the partial sum of latitude and longitude column.""" if len(df) > 0: sum_lat = df.\ apply(lambda row: (row[lat_col]-mean_lat)**2, axis=1).sum() sum_lon = df.\ apply(lambda row: (row[lon_col]-mean_l...
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import re def normalize_prometheus_label(str): """ Prometheus labels must match /[a-zA-Z_][a-zA-Z0-9_]*/ and so we should coerce our data to it. Source: https://prometheus.io/docs/concepts/data_model/ Every invalid character will be made to be an underscore `_`. """ return re.sub(r'[^[a-zA-Z_]...
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def find_tail(tags, num): """ Get the position of the end of the aspect/opinion span in a tagging sequence. Args: tags (list): List of tags in a sentence. num (int): Number to look out for that signals the end of an aspect/opinion. Returns: """ last = False for i, ...
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import os def get_filename_with_incremented_count(filename): """ Get a new filename with a count value appended. The scheme follows the policy for name.conflictBehavior=rename. See https://dev.onedrive.com/items/create.htm. :param str filename: :return str: """ name, ext = os.path.splitext...
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def memoise(func): """memoization trade space for speed by caching function results """ results = dict() def f(*args): if args in results: result = results[args] else: results[args] = result = func(*args) return result f.__name__ = func.__name__ f.__doc__ = func.__doc__ return f
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def time_delta_seconds(t1, t2): """Returns the number of seconds between two datetime.time objects""" t1_s = (t1.hour * 60 * 60 + t1.minute * 60 + t1.second) t2_s = (t2.hour * 60 * 60 + t2.minute * 60 + t2.second) return max([t1_s, t2_s]) - min([t1_s, t2_s])
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def elcc_eligible_capacity_rule(mod, proj, period): """ :param mod: :param proj: :param period: :return: """ return mod.Deliverable_Capacity_MW[proj, period]
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def url_gen_dicter(inlist, filelist): """ Prepare name:URL dicts for a given pair of names and URLs. :param inlist: List of dictionary keys (OS/radio platforms) :type inlist: list(str) :param filelist: List of dictionary values (URLs) :type filelist: list(str) """ pairs = {title: url f...
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def dialect_compare(dialect1, dialect2): """ Compares two dialects. """ orig = set(dialect1.items()) new = set(dialect2.items()) return dict( added=dict(list(new.difference(orig))), removed=dict(list(orig.difference(new))) )
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import json def prepare_scenes(config): """ prepare scenes and scene_labels """ with open(config['train_label_pathname'], 'r') as file: content_main = json.load(file) content = content_main['scenes'] train_scenes = list(content.keys()) scene_labels = {} for scene_name, ...
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def rgb_to_color(r, g, b): """Convert a RGB color into ANTX decimal color.""" r = int(r) g = int(g) b = int(b) r_hexa = hex(r % 256)[2:] # remove '0x' g_hexa = hex(g % 256)[2:] # remove '0x' b_hexa = hex(b % 256)[2:] # remove '0x' hexa = str(r_hexa) + str(g_hexa) + str(b_hexa) ...
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def fix_pc_references(s): """Translate references to the current program counter from ca65 to ASM6. ca65 uses * for PC; ASM6 uses $. Only references at the start or end of an expression or of a parenthesized subexpression get translated. But that should be enough for our use case, as the source code can use (*) t...
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def ns_svg(item_name): """Prepends the svg xml-namespace to the item name.""" return '{http://www.w3.org/2000/svg}' + item_name
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import os def get_files_count(files, suffix): """! @brief Return the file count of files having a specific file suffix. """ return len([f for f in files if os.path.splitext(f)[1] == suffix])
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def named_copy(variable, new_name): """Clones a variable and set a new name to the clone.""" result = variable.copy() result.name = new_name return result
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def locales(): """ Returns a tuple of supported locales. :returns locales: a tuple of all supported locales. """ return ("en-US", "es-ES", "fr-FR", "pt-BR", "de-DE", "it-IT", "ru-RU", "tr-TR", "th-TH", "vi-VN", "zh-TW", "zh-CN", "ja-JP", "ko-KR", "iw-IL", "ar-EG", "ms-MY", "...
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def isScoreFile(f): """Checks whether file 'f' is a compressed MusicXML score file.""" return "score" in f and "analysis_on" not in f and f.endswith("mxl")
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def _map_object(result): """Return a more human friendly pyVmomi object, by creating a mapping of the objects name to the literal object. :Returns: Dictionary :param result: A series of pyVmomi objects, like vim.Network or vim.Datastore :type result: List """ return {x.name: x for x in res...
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def reshape_to_ND(arr, N): """ Adds dimensions to arr until it is dimension N """ ND = len(arr.shape) if ND > N: raise ValueError("array is larger than {} dimensional, given shape {}".format(N, arr.shape)) extra_dims = (N - ND) * (1,) return arr.reshape(arr.shape + extra_dims)
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import requests def get_text_by_id(id): """Get text from Gutenberg based on id. Project Gutenberg sets a restriction on the way that text on their site must be downloaded. This function does not honor the restriction, so the function should be used with care. Parameters ---------- id : i...
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import glob import shutil import os def ResetInitialAndFinalFolders(sPath_i, sPath_f, IsRemove, sFileType): """Reset files in an initial/final sub-folder structure by either moving files back to initial from final or, optionally, deleting all files from both subfolders Args: path_i (String): ...
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def is_before(d1, d2): """ Return True if d1 is strictly before d2. :param datetime.date d1: date 1 :param datetime.date d2: date 2 :return: True is d1 is before d2. :rtype: bool """ return d1 < d2
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import re def normalize_profession(profession): """ Normalize a profession so that it can be mapped to the text NOTE: Currently, we only return the last token """ profession = re.sub(r'[^\w\s]' , " ", profession.decode("utf-8"), re.UNICODE)#remove punctuations profession = profession.split()[-1] # only return...
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def br_node(br_location): """ return the location for each of the vertex """ loc1 = (br_location[0], br_location[2]) loc2 = (br_location[0], br_location[3]) loc3 = (br_location[1], br_location[3]) loc4 = (br_location[1], br_location[2]) return [loc1, loc2, loc3, loc4]
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import re def regex_or(list_of_strings): """Compile a regex matching any of the strings provided.""" re_str = "(" + "|".join(list_of_strings) + ")" return re.compile(re_str, re.IGNORECASE)
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import os def olderThanLog(logfile, lognum): """Return True if logfile which is of the form log.# has a sequence number less than lognum""" (base, extn) = os.path.splitext(logfile) extn = extn[1:] if extn == 'gz': val = int(os.path.splitext(base)[1][1:]) else: val = int(extn) return val < lognum
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def get_dictionary(filename="c06d"): """Return a dictionary of the words and their pronunciations from the CMU Pronouncing Dictionary. Each pronunciation will be a string. """ pro = dict() # initialize word-pronuncation dictionary fin = open(filename) for line in fin: if line[0]=='#'...
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import os def process_pair_params(func): """This decorator allows to enter path to ~/.ssh/id_rsa.pub or provide id_rsa.pub as plain-text. """ def inner(*args, **kwargs): path = kwargs["keypair"]["keypair"]["public_key"] if os.path.isfile(path): with open(path, "r") as sr: ...
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import os import json def git_hashes(): """ return git hashes at time of snapshot """ path = os.path.join(os.path.dirname(__file__), "snapshot/git_hashes.json") with open(path, "r") as myfile: return json.loads(myfile.read().strip())
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def update_global_event_counts(key_value_pairs): """ Function that receives as parameter a Dstream and applies an update function in order to keep aggregated information about event types counts. """ def update(new_values, accumulator): if accumulator is None: accumulator = 0...
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def serialize_event_person(person): """Serialize EventPerson to JSON-like object.""" return {'_type': 'EventPerson', 'id': person.id, 'email': person.email, 'name': person.display_full_name, 'firstName': person.first_name, 'familyName': person.last_nam...
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def get_undecided_variable(problem): """ Return one variable that is still unset in the problem """ for variable, domain in problem['variables'].items(): if len(domain) > 1: # Undecided if more than 1 value possible return variable
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def create_slurm_options_string(slurm_options: dict, srun: bool = False): """ Convert a dictionary with sbatch_options into a string that can be used in a bash script. Parameters ---------- slurm_options: Dictionary containing the sbatch options. srun: Construct options for an srun command inst...
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import torch def kld_loss(pred, target, tao=1.0, nonlinear='sqrt', **kwargs): """KLD loss. Args: pred (torch.Tensor): The prediction. target (torch.Tensor): The learning target of the prediction. beta (float, optional): The threshold in the piecewise function. Defaults to ...
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from typing import Optional from typing import List from typing import Tuple from typing import Set def parse_node_types(node_type_specs: Optional[str]) -> List[Tuple[Set[str], Optional[float]]]: """ Parse a specification for zero or more node types. Takes a comma-separated list of node types. Each node ...
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import yaml def get_target_directory_from_config_file(cfg_src): """ Gets download directory from specified section in a configuration file. """ # reading complete configuration with open(cfg_src, 'r') as yml_file: cfg = yaml.safe_load(yml_file) try: tgt_dir = cfg['download...
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def check_not_errors_tcp(requets_raw, response_raw, consulta): """ Chequea si hay errores en la trama, formato TCP :param requets_raw: trama con la cual se hizo la solicitud :type requets_raw: bytes :param response_raw: trama de respuesta :type response_raw: bytes :return: True si la no hay...
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def check_search_query(query: str) -> bool: """Checking for a valid search query.""" if query.startswith('/'): return False return True
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import io def readmodifierrules(filename): """Read a file containing heuristic rules for marking modifiers. Example line: ``S *-MOD``, which means that for an S constituent, any child with the MOD function tag is a modifier. A default rule can be specified by using * as the first label, which always matches (in...
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def split_data_set(data_set, axis, value): """ 根据给定的维度对数据集进行切割 :param data_set: 数据集 :param axis: 维度 :param value: 数据值 :return: 切割后的数据集 """ temp_data_set = [] for vect in data_set: if vect[axis] == value: temp_vect = vect[:axis] temp_vect.extend(vect[ax...
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def invert_prob(img): """ Prepares the prob image for post-processing. We have to invert the values in img. Minimums become and maximas and vice versa. It can convert from float -> to uint8 if needed. Args: img: 2-D matrix. Returns: The inversion of matrix img. """ img ...
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def num_spike_powers(FWHM): """ num_spike_powers(FWHM): Return the (approx.) number of powers from a triangular spike pulse profile which are greater than one half the power perfect sinusoidal pulse profile. Both the spike and the sine are assumed to have an area under one full ...
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import math def out_size(dim_in, k, s, p, d): """Calculates the resulting size after a convolutional layer. Args: dim_in (int): Input dimension size. k (int): Kernel size. s (int): Stride of convolution. p (int): Padding (of input). d (int): Dilation """ re...
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import os def _rel_path_if_descendant(path, root): """ Take a path and return either an absolute path or a path relative to root. If the path does not exists, it returns None. :param path: :param root: :return: """ real_root = os.path.realpath(root) real_path = os.path.realpath(pa...
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def extract_nucleotide_information(seq, start, end): """ this function returns the relative nucleotide ratio comparing the the drop and to the entire genome :param seq: genomic sequence :param start: start position. int :param end: end position. int :return: a list with tuples for each nucleotid...
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