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def delete_line_breaks(text, joiner): """ Deletes line breaks and joins split strings in one line :param text: string :param joiner: string used to join items [" " for abs or "" for title] :return: joined text """ text = text.split('\n') text = joiner.join(text) return text
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def get_adm_fields(adm_level, field_name="name"): """Get list of adm-fields from `adm_level` up to the adm1 level""" return [f"adm{i}_" + field_name for i in range(1, adm_level + 1)]
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def return_tuple(): """ タプル返却 Return: list: タプル返却値 """ return (4, 5, 6)
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def get_vplex_gatherfacts_parameters(): """This method provide the parameters required for the ansible gather facts module on VPLEX""" return dict( cluster_name=dict(type='str', required=False, default=''), gather_subset=dict(type='list', required=False, elements='str', ...
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def comeXpayY(come_x, pay_y, per_head, pax): """ มา x จ่าย y เช่น มา 4 จ่าย 3 :param come_x: มา :param pay_y: จ่าย :param per_head: ค่าอาหารต่อหัว :param pax: จำนวนลูกค้าในโต๊ะ :return: ค่าอาหาร """ return (pax // come_x) * (pay_y * per_head) + (pax % come_x) * per_head
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def prepare_actions(actions, enabled_analyzers): """ Set the analyzer type for each buildaction. Multiple actions if multiple source analyzers are set. """ res = [] for ea in enabled_analyzers: for action in actions: res.append(action.with_attr('analyzer_type', ea)) retu...
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import click def style_bold(txt, fg): """Style text with a bold color.""" return click.style(txt, fg=fg, bold=True)
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from typing import Optional from typing import Tuple import re def find_github_owner_repo(url: Optional[str]) -> Tuple[Optional[str], Optional[str]]: """Find the owner's name and repository name from the URL representing the GitHub repository. Parameters ---------- url : Optional[str] Any...
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from typing import Union def celsius_to_kelvin(temperature_in_celsius: Union[int, float]) -> float: """ >>> celsius_to_kelvin(0) 273.15 >>> celsius_to_kelvin(1) 274.15 >>> celsius_to_kelvin(-1) 272.15 >>> celsius_to_kelvin(-273.15) 0.0 >>> celsius_to_kelvin(-274.15) Tra...
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def union(x, y=None): """ Return the union of x and y, as a list. The resulting list need not be sorted and can change from call to call. INPUT: - ``x`` - iterable - ``y`` - iterable (may optionally omitted) OUTPUT: list EXAMPLES:: sage: answer = union([1,2,3,4], [5,6])...
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from typing import List from typing import Any def split(values: List[Any], split_count: int) -> List[Any]: """ Splits ``values`` into ``split_count`` pieces. """ list_length = len(values) return [ values[ (list_length * i // split_count): (list_length * (i + 1) // split_count)...
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def msd_ratio(track, fram1=3, fram2=100): """Calculates the MSD ratio of the input track at the specified frames. Parameters ---------- track : pandas.core.frame.DataFrame At a minimum, must contain a Frames and a MSDs column. The function msd_calc can be used to generate the correctly...
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from typing import List def define_frontal_base_direction(robot: str) -> List: """Define the robot-specific frontal base direction in the base frame.""" if robot != "iCubV2_5": raise Exception("Frontal base direction only defined for iCubV2_5.") # For iCubV2_5, the reversed x axis of the base fr...
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from typing import Callable from typing import Any def get_or_create_state(*, state: object, key: str, factory: Callable[[], Any]) -> Any: """ Get or create sub-state entry (using factory callback) """ value = getattr(state, key, None) if value is None: value = factory() setattr(state, key...
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import json async def load(file): """json.load in a asynchronous way""" return json.load(file)
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import sys from abc import abstractmethod def abstract_property(func): """ Python2/3 compatible abstract property decorator. :param func: method to decorate :type func: callable :returns: decorated function :rtype: callable """ return (property(abstractmethod(func)) if sys.version_in...
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from typing import List from typing import Dict from pathlib import Path def collect_file_pathes_by_ext( target_dir: str, ext_list: List[str] ) -> Dict[str, List[Path]]: """Return the list of Path objects of the files in the target_dir that have the specified extensions. Args: target_dir (str): D...
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import subprocess def get_version(): """Get version of gr1c as detected by TuLiP. Failure to find the gr1c program or errors in parsing the received version string will cause an exception. @return: (major, minor, micro), a tuple of int """ try: v_str = subprocess.check_output(["gr1c"...
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def node_is_empty(node): """Handle different ways the regulation represents no content""" return node.text.strip() == ''
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def getChecked(data): """ This function gets the modified tree object back from the visualization and analyzes what biosources and tfs are selected by the user. The return of this function is a dictionary containing the selected biosources and tfs. """ whats_checked_bio_tf={} #analyze what was c...
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def find_dict_in_list_from_key_val(dicts, key, value): """ lookup within a list of dicts. Look for the dict within the list which has the correct key, value pair Parameters ---------- dicts: (list) list of dictionnaries key: (str) specific key to look for in each dict value: value to match ...
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from typing import List from typing import Any def get_combinations(*args: List[Any]) -> List[List]: """Takes K lists as arguments and returns Cartesian product of them. Cartesian product means all possible lists of K items where the first element is from the first list, the second is from the second and...
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def unique_from_list_field(records, list_field=None): """ Return a list of unique values contained within a list of dicts containing a list. """ values = [] for record in records: if record.get(list_field): values = values + record[list_field] return list(set(values))
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def calculate_scan_time(metadata): """Parse scan time from metadata. Returns: timestamp string """ scan_time = None if 'terraref_cleaned_metadata' in metadata and metadata['terraref_cleaned_metadata']: scan_time = metadata['gantry_variable_metadata']['datetime'] else: ...
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def space_replacer(string): """ :type string: str :rtype: str """ string = string.replace(" ", "_") while "__" in string: string = string.replace("__", "_") return string
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def update_weights(weights, error, l_rate, vector): """Takes in a given weight, error, learning rate, and vector element Retuns updated weight """ return [weight + (elem * l_rate * error) for elem, weight in zip(vector, weights)]
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def get_action_mapping(n, exclude_self=True): """In a matrix view, this a mapping from 1d-index to 2d-coordinate.""" mapping = [ (i, j) for i in range(n) for j in range(n) if (i != j or not exclude_self) ] return mapping
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def human_size(qbytes, qunit=2, units=None): """ Returns a human readable string reprentation of bytes""" if units is None: units = [' bytes', 'KB', 'MB', 'GB', 'TB', 'PB', 'EB'][qunit:] return str(qbytes) + units[0] if qbytes < 1024 else human_size(qbytes >> 10, 1, units[1:])
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from typing import OrderedDict def archive_metadata(): """ Maps column names in the archive data file to internal variables. This is the only place where the original column names should be mentioned. """ columns = OrderedDict([ ('Id', 'label'), ('Postnr', 'db_id'), ('...
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import time def parse_event_response(client, event, fpid, href): """ Prepare required event json object from event response :param href: reference link of event :param fpid: unique id of event. i.e EventId :param client: object of client class :param event: event indicator from response :...
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def flesch(df): """ Calculates the Flesch formula for each text. The formula and its interpretation is given in this wiki page: https://en.wikipedia.org/wiki/Flesch%E2%80%93Kincaid_readability_tests Needed features: Avg_words_per_sentence Avg_syllables_per_word Adds column: Fle...
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def state_size_dataset(sz): """Get dataset key part for state size. Parameters ---------- sz : `int` State size. Returns ------- `str` Dataset key part. """ return '_ss%d' % sz
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def find_max_score(scores): """ 寻找并返回scores列表中成绩最高的学生下标 :param scores: scores列表 :return: 最高分同学在scores中的下标 """ m = 0 n = len(scores) for i in range(n): if scores[i].score > scores[m].score: m = i return m
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def trunc(number, n_digits=None, *, is_round=False): """ Function to truncate float numbers >>> from snakypy import helpers >>> helpers.calcs.trunc(1.9989, 2) 1.99 >>> helpers.calcs.trunc(1.9989, 2, is_round=True) 2.0 Args: number (float): Must receive a...
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import re def comment_modules(modules, content): """ Disable modules in file content by commenting them. """ for module in modules: content = re.sub( r'^([ \t]*[^#\s]+.*{0}\.so.*)$'.format(module), r'#\1', content, flags=re.MULTILINE ) ...
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import pathlib import shutil def dir_sample_patches(sample_patch1, sample_patch2, tmpdir_factory): """Directory of sample image patches for testing.""" dir_path = pathlib.Path(tmpdir_factory.mktemp("data")) try: dir_path.joinpath(sample_patch1.name).symlink_to(sample_patch2) dir_path.join...
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def return_value(value): """直接获取值方法""" return value
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import logging def get_logger(logger_name): """ Get the dev or prod logger (avoids having to import 'logging' in calling code). Parameters: logger_name - 'dev' or 'prod' Returns: Logger to use for logging statements. """ valid_logger_names = ['dev','prod']...
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def get_out_path(config): """ Returns path where summary output is copied after d-blink finishes running :param config: ConfigTree :return: path if it exists, otherwise None """ steps = config.get_list('dblink.steps') copy_steps = [a for a in steps if a.get_string('name') == 'copy-files'] #...
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def _is_within_close_bracket(s, index, node): """Fix to include right ']'.""" if index >= len(s) - 1: return False return s[index] == ']' or s[index + 1] == ']'
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def _clean(item): """Return a stripped, uppercase string.""" return str(item).upper().strip()
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def get_talkroom_timerange(talk_room_list): """ returns :talk toom 的时间range 以及最早和最晚的时间 int, datetime.time, datetime.time """ t_start = talk_room_list[0].Rstart t_finish = talk_room_list[0].Rfinish for room in talk_room_list: t_start = min(t_start, room.Rstart) t_finish = max(...
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def validation_email_context(notification): """Email context to verify a user email.""" return { 'protocol': 'https', 'token': notification.user.generate_validation_token(), 'site': notification.site, }
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import os def quick_mkdir(name): """ 当前目录下建一个文件夹 :param name: 文件夹名称 :return: 新建的文件夹的完整路径 """ new_directory = os.getcwd() + '\\' + name + "\\" if not os.path.exists(new_directory): try: os.mkdir(os.getcwd() + '\\' + name) except Exception as e: print(...
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def parse_path(path): """Parse a path of /hash/action/my/path returning a tuple of ('hash', 'action', '/my/path') or None values if a shorter path is given. :param path: :py:class:`string`: the path :rtype: :py:func:`tuple` """ if path == '/': return None, None, None paths =...
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import six def _contains(values, splitter): """Check presence of marker in values. Parameters ---------- values: str, iterable Either a single value or a list of values. splitter: str The target to be searched for. Return ------ boolean """ if isinstance(val...
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def get_top_namespace(node): """Return the top namespace of the given node If the node has not namespace (only root), ":" is returned. Else the top namespace (after root) is returned :param node: the node to query :type node: str :returns: The top level namespace. :rtype: str :raises: ...
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def football_points(win: int, draw: int, loss:int): """Calculate the number of points for a football team.""" return (win * 3 + draw)
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def perc_diff(bigger, smaller): """ Calculates the percentual difference between two int or float numbers :param bigger: greater value :param smaller: smaller value :return: dif_perc """ dif_perc = round(((bigger - smaller) / smaller * 100), 2) return dif_perc
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def uploads_to_list(environment, uploads_list): """ return list of upload url """ return [upload.get("url") for upload in uploads_list]
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def _element_fill_join(elements, width): """Create a multiline string with a maximum width from a list of strings, without breaking lines within the elements""" s = '' if(elements): L = 0 for i in range(len(elements) - 1): s += str(elements[i]) + ', ' L += len(el...
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def hmsToHour(s, h, m, sec): """Convert signed RA/HA hours, minutes, seconds to floating point hours.""" return s * (h + m/60.0 + sec/3600.0)
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def convert_to_indices(vert_list): """ Convert given flattened components list to vertices index list :param vert_list: list<str>, list of flattened vertices to convert # NOTE: Vertices list must follow Maya vertices list convention: ['{object_name}.v[0]', '{object_name}.v[1]' ...] :return: list<str...
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def get_client_rad(access_route, logger=None): """In most cases, the client's IP and load balancer's IP are returned. But rarely contains the user side of proxy IP, return three IP in access_route access_route e.g. [111.111.111.111] is example of real clieant ip. - Direct Access ...
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def guess_feature_group(feature): """Given a feature name, returns a best-guess group name.""" prefix_list = ( ('Sha', 'Shadow'), ('miRNA', 'miRNA'), ('chr', 'mRNA'), ('Fir', 'Firmicutes'), ('Act', 'Actinobacteria'), ('Bac', 'Bacterodetes'), ('Pro', 'Prote...
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def _tensorize(d, dtype=None, name=None, as_ref=False): """Tensor conversion function presuming `hasattr(d, '_value')`.""" return d._value(dtype, name, as_ref) # pylint: disable=protected-access
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import re def input_server_config( ip_prompt: str = "Enter the IP of where to host the server: ", port_prompt: str = "Enter the Port of where to host the server: ", ) -> tuple[str, int]: """ Provides a built-in way to obtain the IP and port of where the server should be hosted, through :func:`inpu...
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def add_lane_lines(img, lane_line_img): """ Colors lane lines in an image """ ret_img = img.copy() ret_img[(lane_line_img[:, :, 0] > 0)] = (255, 0, 0) ret_img[(lane_line_img[:, :, 2] > 0)] = (0, 0, 255) return ret_img
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import re def parse(instruction): """ Take an instruction as a string and return a tuple (output wire, input specification). Example input specifications: * ("ID", "6") for constant input * ("ID", "a") for direct wire input "a" * ("NOT", "ab") for negated wire "ab" * ("AND", "76", "xy") for bitwise-AND...
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import math def _ms_to_us(time_ms, interval_us=1e3, nearest_up=True): """Convert [ms] into the (not smaller/greater) nearest [us] Translate a time expressed in [ms] to the nearest time in [us] which is a integer multiple of the specified interval_us and it is not smaller than the original time_s. ...
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def generate_dmenu_options(optlist: list) -> str: """ Generates a string from list seperated by newlines. """ return "\n".join(optlist)
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import time def _is_active(log_stream: dict, cut_off: int) -> bool: """ Determine if the given stream is still active and worth tailing. :param log_stream: A dictionary returned by `describe_log_streams` describing the log_stream under consideration. :param cut_off: The number...
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def box_df_broadcast_failure(request): """ Fixture equivalent to `box` but with the common failing case where the DataFrame operation tries to broadcast incorrectly. """ return request.param
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def find_edges(silhouette): """Returns a map for each row in the table that has an edge with a filled out portion on the upper side and empty space on the lower side.""" row_map = [False] * silhouette.shape[0] #go thru every row of the silhouette for y in range(silhouette.shape[0]): for x in ran...
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def _check_regex(regex, value): """Return true if *value* matches regex.""" try: return regex.search(value) is not None except TypeError: if value is regex: return True # <- EXIT! value_repr = repr(value) if len(value_repr) > 45: value_repr = value_r...
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import re def mountpoint_dataset(mountpoint: str): """ Check if dataset is a 'zfs' mount. return dataset, or None if not found """ target = re.compile(r'^.*\s+' + mountpoint + r'\s+zfs\b') with open("/proc/mounts") as f: mount = next((ds for ds in f.read().splitlines() if target.sear...
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def _add_necessary_columns(args, custom_columns): """ Convenience function to tack on columns that are necessary for the functionality of the tool but yet have not been specifically requested by the user. """ # we need to add the variant's chrom, start and gene if # not already there. i...
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import random def next_img_pair_to_grow_reconstruction(n_imgs, init_pair, resected_imgs, unresected_imgs, img_adjacency): """ Given initial image pair, resect images between the initial ones, then extend reconstruction in both directions. :param n_imgs: Number of images to be used in reconstruction :...
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def select_attr(obj, name): """Prepares data for set_attr""" return {'object': obj, 'name': name}
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def get_part_of_speech(s): """ Detect part-of-speech encoding from an entity string, if present. :param s: Entity string :return: part-of-speech encoding """ tokens = s.split("/") if len(tokens) <= 4: return "" pos_enc = tokens[4] if pos_enc == "n" or pos_enc == "a" or pos_e...
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def get_pam_and_tool_from_filename(score_filename): """Extracts pam/tool info from a score filename Args: score_filename: specific score file name (including .txt) Returns: list of pam, pam_tool Example: Example score file: 'aggt_Chimera.txt' output: ['aggt', 'Chimera'] ...
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from typing import Dict from typing import Union def parse_websocket_action(data: Dict[str, str]) -> Union[str, None]: """ Returns the websocket action from a given decoded websocket message or None if the action doesn't exist or isn't a valid string. """ if isinstance(data, Dict): websoc...
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def get_object(conn, key, error='object not found', version_id=None): """ Gets an object from s3 """ def helper(): try: if version_id is None: return conn['client'].get_object(Bucket=conn['bucket'], Key=key) else: return conn['client'].get_object(Bucket=conn['bucket'], Key=key, ...
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def containedStructure(containee, container): """ Checks weather the structure of the given containee is contained in the given container. This is similar to sameStructure with the difference that only a subset has to be matching. To the structure counts the type of the value except None which matc...
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import math def add_buffer_to_label(sparsity, label_windows, min_label, max_label, window_scale_limit=2, max_sparsity=0.01): """ Add buffers to windows to produce the desired anomaly sparsity. If the current sparsity is greater than the max_sparsity, then this function does not do anything. This will not...
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import fnmatch def filter_repos(config, repo_dir=None, vcs_url=None, name=None): """Return a :py:obj:`list` list of repos from (expanded) config file. repo_dir, vcs_url and name all support fnmatch. Parameters ---------- config : dist the expanded repo config in :py:class:`dict` format. ...
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def extend_smallest_list(a, b, extension_val=None): """Extend the smallest list to match the length of the longest list. If extension_val is None, the extension is done by repeating the last element of the list. Otherwise, use extension_val. Arg(s): a - A list. b - A list. exte...
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import os import json def get_canned_json(name_of_file): """ Read canned Grid request from file """ location = os.path.join(os.path.dirname(__file__), "test_files", name_of_file) try: with open(location, "r") as grid_file: data = json.load(grid_file) return data exce...
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def doc(l, b, i): """ !d Return the main docstring of a module !a <module> !r developer """ for m in l.get_modules(): if i.args[0] == m.__name__: if m.__doc__ is not None: for line in m.__doc__.split('\n'): b.l_say(line, i, 0) e...
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import os def list_dirs(path, suffix): """ Recursively list all dirs under path with given suffix """ dirs = list() for p in os.listdir(path): p = os.path.join(path, p) if os.path.isdir(p): if p.endswith(suffix): dirs.append(p) else: ...
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import sys from pathlib import Path def get_config_directory(): """Returns the Dakara config directory to use for the current OS. Returns: path.Path: Path of the Dakara config directory. Value is not expanded, so you have to call `.expand()` on the return value. """ if "linux" in sys....
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def to_celsius(temp): """Convert temperature measured on the Fahrenheit scale to Celsius. Parameters: temp (int): temperature value to convert Returns float: temperature value converted to Celsius """ return round((int(temp) - 32) * .5556, 3)
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def ReadToken(stream, binary, remove_tail_space = True): """Read string token from input stream. Args: stream: An opened KaldiInputStream. binary: If the input stream is in binary. remove_tail_space: Whether to remove the tailing space. Returns: A string read from the input...
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def readable_bool(b): """Takes a boolean variable and returns "yes" for true and "no" for false as a string object. :param b: boolean variable to use """ if b: return "yes" else: return "no"
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import re def is_url(_str): """return true if the str input is a URL.""" ur = re.findall('http[s]?://(?:[a-zA-Z]|[0-9]|[$-_@.&+]|[!*\(\), ]|(?:%[0-9a-fA-F][0-9a-fA-F]))+', _str) return len(ur) > 0
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import torch def log_sum_exp(x): """ :param x: Tensor. shape = (batch_size, num_mixtures, height, width) :return: """ m2 = torch.max(x, dim=1, keepdim=True)[0] m = m2.unsqueeze(1) return m + torch.log(torch.sum(torch.exp(x - m2), dim=1))
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from typing import Union from typing import List def common_missing_fills(variable_type: str) -> Union[List[int], List[str]]: """Return a list of common missing stand-ins. Returns ------- List[int] Parameters ---------- variable_type : str What type of variable to return the miss...
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def _tc_enc(value: str, code: int = 32) -> str: """Encode error message values with terminal colors. See: - <https://i.stack.imgur.com/9UVnC.png> - <https://stackoverflow.com/a/61273717> For Python's somewhat-poorly-documented encodings: <https://docs.python.org/3/library/codecs.ht...
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def list_reduce(fn, lst, dftl): """Implementation of list_reduce.""" res = dftl i = 0 while i < len(lst): res = fn(res, lst[i]) i = i + 1 return res
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def _MonkeypatchTokenizerHelpers(module, func_names): """Replaces preprocessor functions. Pygments defines some functions that are called when a lexer is constructed, returning opaque objects that we can't inspect. We must replace those objects with ones that simply note the name of the function called. For ...
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def jwt_claim(request): """ Holds parametrized information about client_ids and response codes they should return """ return request.param
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def obtain_ECG(tensec_data): """ obtain ECG values of ten second data :param tensec_data: 10 seconds worth of heart rate data points :return ECGData: ECG unmultiplexed data """ ECGData = tensec_data[1::2] return ECGData
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def get_nic(parent, host, port, community): """ This is a plugin to be loaded by Ecks3 Info on the data returned is available at http://www.oidview.com/mibs/0/IF-MIB.html return an array of tuples containing (name, type, mtu, speed, mac, admin_status, oper_status, last_changed, in_byte...
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def is_int(s: str) -> bool: """Returns True iff the field can be interpreted as an int. Valid value examples: 3, 3.0, "3", "3.0" """ try: num = float(s) except (ValueError, TypeError) as e: return False # Handle NaN if num != num: return False return num == rou...
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def generate_tissue_box(image_file,bounding_box): """cut small piece of tissue from image opened in PIL""" imc = image_file.crop(bounding_box) return imc
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def tert_to_offset_t_j2000(tert): """地球時を基にしてJ2000元期からの經過日數を求める.""" return tert.terrestrial_time - 2451545.0
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import ast def str2dict(d_s): """Convert string to dictionary :d_s: Dictionary string :returns: Evaluated dictionary """ return ast.literal_eval(d_s)
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def project_08_largest_product(count): """ Problem 8: Find the largest product of n numbers in a hardcoded series.. Args: count (int): The number of adjacent numbers to determine product for. """ def product(sequence): if 0 in sequence: return 0 else: pro...
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def load_input_segs(cand_segs, ref_segs, src_segs=None): """ Load input files specified in the CL arguments into memory. Returns a list of 5-tuples: (segment_id, origin, src_segment, candidate_segment, reference_segment) "origin" is always None (present for compatibilit...
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from typing import Union def fibonacci_k_n_term(n: int, k: int) -> Union[int, NotImplementedError]: """ Returns the nth fibonacci_k number. Where F_{k,n+1} = k*F_{k,n} + F_{k,n−1} for n ≥ 1 """ if n < 0: return NotImplementedError('negative n is not implemented') if n in [0, 1]: ...
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