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def joblib_cache(ds, dirname, version, numpy_keys=None, mmap_mode=None, eager=True): """ chunks data together, converting values in `keys` into numpy arrays, (for more efficient storage) then dechunks them afterwards d...
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def find_in_reference_list(reference_list, source_name): """Check if it is already in reference list""" for reference in reference_list: if reference['sname'] == source_name: return True return False
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import numpy def _subset_xy_grid_for_interp( field_matrix, grid_point_x_coords_metres, grid_point_y_coords_metres, query_x_coords_metres, query_y_coords_metres): """Subsets x-y grid before interpolation. Interpolation will be done from the x-y grid to the query points. M = number of rows...
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import numpy def npmedian(x): """Numpy Library Median""" return numpy.median(x)
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def canonicalize(data): """Restructure to preferred TCZYX or CZYX form...""" data = data.transpose(*[d for d in map(data.axes.find, 'TCIZYX') if d >= 0]) projection = [] if 'T' in data.axes and data.shape[0] == 1: projection.append(0) # remove trivial T dimension if 'C' not in data.axes: ...
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def upper(input_string: str) -> str: """Convert the complete string to uppercase.""" return input_string.upper()
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import traceback def tryExcept(myFunction): """ A decorator the surrounds the inner function with a try/except EXAMPLE USE @tryExcept def fragileFunction(): pass """ def wrapper(*args, **kwargs): try: return myFunction(*args, **kwargs) except Exception as error: traceback.print_exception(type(e...
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def auth_set(hashed_sks, auth_set_indices, height, hashfun): """Return the authentication set defined by the given indices. Keyword arguments: hashed_sks -- the hased secret key components which form the leaves of the tree auth_set_indices -- A list of tuples (h, i) defini...
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def _var_names(self): """ Covers more activations than act_names """ predictor = self predictor.retain(True) x = self.xp.random.randn(16,3,32,32).astype('f') #t = self.xp.random.randint(0,1, size=(16,)) #loss = self(x, t) loss = self(x) names = [name for name,_ in predictor.namedvars()] ...
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import subprocess def git(*args, err_ok=False, stderr_to_stdout=False): """Runs a git command, returning the output.""" stderr = subprocess.DEVNULL if err_ok else None stderr = subprocess.STDOUT if stderr_to_stdout else stderr try: return ( subprocess.check_output(["git"] + list(ar...
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def read_credentials(filepath='.yelp/credentials'): """Read credential file and return dictionary of important information""" with open(filepath, 'r') as f: contents = f.readlines() credentials = {} key_items = ['client_id', 'api_key'] for line in contents: for item in key_items: ...
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def get_ns(tag): """ Extract namespace. This function is opposite to get_local_name, in that it returns the first part of the tag: the namespace. Parameters ---------- tag : str Tag to process. """ p_open = tag.find('{') p_close = tag.find('}...
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import ast def convert_types_in_dict(xml_dict): """ Evaluates all dictionary entries into Python literal structure, as dictionary read from XML file is always string. If value can not be converted it passed as it is. :param xml_dict: Dict - Dictionary of XML entries :return: Dict - Dictionary with...
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import os def get_access_token(sandbox=False): """get upload key, strip white space.""" if sandbox: return open(os.path.join(os.environ["HOME"], ".sandbox_id"), "r").read().strip() else: return open(os.path.join(os.environ["HOME"], ".zenodo_id"), "r").read().strip()
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import os def dir_from_path(path): """If path is file address. Strip file name and retrieve dir directory""" if not os.path.isdir(path): path = os.path.dirname(path) return path
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def nvmf_set_max_subsystems(client, max_subsystems=None): """Set NVMe-oF target options. Args: max_subsystems: Maximum number of NVMe-oF subsystems (e.g. 1024) Returns: True or False """ params = {} params['max_subsystems'] = max_subsystems retu...
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def get_parameters(parameters): """ Gives confidence and support, also if not given in parameters """ confidence = parameters.get("min_confidence", 0.75) support = parameters.get("min_support", 2) return confidence, support
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import os def format_stacktrace(stack): """Print a stack trace that is easier to read. * Reduce paths to basename component * Truncates the part of the stack after the check failure """ lines = [] for _, f in enumerate(stack): fname = os.path.basename(f[0]) line = "\t%s:%d\t%s...
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import math def ZScore_GeneGo(n, N, n1, n2): """Each subnetwork is associated with a Z-score which ranks the subnetworks according to saturation with the objects from the initial gene list. The Z-score ranks the subnetworks of the analyze network algorithm with regard to their saturation with genes from the exper...
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import functools def to_pagination(): """Decorator to convert the result query into a pagination object. :return: Decorated function :rtype: fun """ def decorator_add_sorting(func): @functools.wraps(func) def decorator(*args, **kwargs): """Converts the query into a pag...
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from time import perf_counter from time import time def timer(): """Multiplying is done o return millis and keep backwards compatibility. """ try: return int(round(perf_counter() * 1000)) except ImportError: return int(round(time() * 1000))
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def returns(k, df): """ Computes the log returns over a k-day period Arguments: k -- window size df -- yahoo finance dataframe Returns: Log returns over a day period """ return ((df.open / df.adj_close.shift(k)) - 1) * 100
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def read_acl_file(filename): """Read contents of given acl file. Args: filename: name of file to be read for acl information Returns: list: list containing ACL entries """ f = open(filename, 'r') content = f.readlines() f.close() # Parse acl = [] for entry in ...
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def is_status_complete(status: str) -> bool: """ Check if stack status is running and complete. """ return status in ("CREATE_COMPLETE", "UPDATE_COMPLETE")
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import os def get_version(): """get the package version from __init__.py modified from this source: https://packaging.python.org/guides/single-sourcing-package-version/ """ package_dir = os.path.abspath(os.path.dirname(__file__)) with open(os.path.join(package_dir, "astropaint", "__init__.py"), "r...
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import math def create_tsp_data(rt): """Stores the distance matrix for the stops on the route""" data = {} data['time_matrix'] = [] row = [] for i in range(len(rt.stop)): for j in range(len(rt.stop)): if rt.stop[i].key != rt.stop[j].key: row.append(int(math.floo...
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import random def next_household_ages(household_list): """ :param: complete list of households :return: randomly select a type of household from a distribution suitable to City, and return the list of the ages of the people in that household """ return random.choice(household_list)
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import argparse def create_arg_parser(): """Creates argument parser Returns: argparse.ArgumentParser: Parser to fetch arguments from terminal """ parser = argparse.ArgumentParser(description="Welcome to Homeless Network Server! (run to start server)", prog="HomelessNet") parser.add_argument('--init', des...
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def multiply(value, arg): """ Multiplies the arg and the value :param value: :param arg: :return: """ if value: value = "%s" % value if type(value) is str and len(value) > 0: return float(value.replace(",", ".")) * float(arg) return None
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import math def mapping_options(target_line_angle, step_angle): """takes the target line slope angle, and the given rule step angle, and returns the two lines that intersect at the target line at the step angle""" # first get base step angle slopes base = [math.tan(math.radians(step_angle)), math...
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import torch def create_loss_mask(inp): """mask for the loss function""" mask = torch.all(inp == 0, dim=-1).float() return mask[:, 1:]
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def root_generator(folder, build, variant="common"): """ Generate roots for the SHAxxx hash lookup URLs. :param folder: Dictionary of variant: loader name pairs. :type folder: dict(str: str) :param build: Build to check, 3 letters + 3 numbers. :type build: str :param variant: Autoloader v...
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import argparse def parse_arguments(args_to_parse): """ Parse CLI arguments """ descr = 'Train a baseline model' parser = argparse.ArgumentParser(description=descr) general = parser.add_argument_group('General settings') general.add_argument('name', type=str, help="The name of the experimental di...
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def countDigits(n): """Count the number of digits in a given number "n". """ num = len(str(abs(n))) return num
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def safe_issubclass(cls, classinfo): """As the builtin issubclass, but returns False instead of a TypeError if the first argument is not a class.""" try: return issubclass(cls, classinfo) except TypeError: # cls is not actually a class return False
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def calculate_aggregates_day_wise(docs_df): """ Takes a Pandas data frame with index=published_date, cols: num_occurrences and arxiv_identifier as input, calculates the no. of unique and total occurrences by grouping by published_date and cacluating the count and sum on the column num_occurrences. The a...
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def get_news_url(tweet): """ searchs and returns the link in the tweet Args: tweet: tweet as tweepy object Returns: url if exists """ print("Searching for URL in the tweet..") try: return tweet.entities.get('urls')[0].get('expanded_url') except: print("Url...
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from typing import Optional def doc_to_doc_string(doc: Optional[str], indent_level: int = 0) -> str: """Generate a documentation string from a schema salad doc field.""" lead = " " + " " * indent_level + "* " if doc: doc_str = "\n".join([f"{lead}{line}" for line in doc.split("\n")]) else: ...
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def safe_div(x, y): """ This function divides two numbers and avoids division by zero :param x: x-value :param y: y-value :return: result """ if y < 1.e-5: y = 1.e-5 if x < 1.e-5: x = 1.e-5 return x / y
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def get_evinfo(act_ptrn): """ [概要] アクション実行パターン別にテストで使用するイベント情報を返却 [引数] act_ptrn : 1=OPERATION_ID, 2=SERVER_LIST, 3=MENU_ID """ event_info = '{"EVENT_INFO":["mas-pj-dev","httpd"]}' if act_ptrn == 3: event_info = '{"EVENT_INFO":["mas-pj-dev","httpd","date"]}' elif act_ptr...
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def roi_corners(roi): """ roi_corners = [top_left, top_right, bottom_left, bottom_right] """ return [ roi[0], [roi[1][0], roi[0][1]], [roi[0][0], roi[1][1]], roi[1] ]
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def unzip(zipped): """ Unzip a zipped list :param list-of-tuple zipped: list of tuples to be disaggregated :returns: list of tuples Example _______ >>> unzip([(1, 2, 3), (4, 5, 6), (7, 8, 9)]) [(1, 4, 7), (2, 5, 8), (3, 6, 9)] """ return list(zip(*zipped))
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def getCollectionKeys(collection): """Get a set of keys from a collection""" keys_list = [] collection_list = collection.find().limit(300) #otherwise pulls all records just to get schema which is bit wasteful. Yea, may miss some field names, but it's good compromise for document in collection_list: ...
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def can_manage_content(user, content): """ Returns True if user is staff or instructor(owner). """ if user.is_authenticated(): owner = user == content.course.owner if user.is_staff or owner: return True return False
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from typing import List from typing import Tuple def extract_node_waypt(way_field: List[Tuple[str, str]]) -> int: """ Given a list with a reference node such as [('ref', '0')], extract out the lane ID. Args: way_field: key and node id pair to extract Returns: node_id: unique ID for a n...
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import functools import traceback import sys def suppress_broken_pipe_msg(f): """ When using the CLI as part of a script pipeline, we want to gracefully handle the next command closing the pipe early (eg head). This is a workaround for the fact that python prints an error message to the console even ...
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from typing import List def create_subdict(data: List): """ Return data in List form as dictionary, Start, to which model parameters is appended. Parameters ----------- data: List Data (potentially pca component output in 2d form). Return ------- Dict: D...
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def get_suggestion_string(sugg): """Return the suggestion list as a string.""" sugg = list(sugg) return ". Did you mean " + ", ".join(sugg) + "?" if sugg else ""
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def str_to_class(s): """Alternate helper function to map string class names to module classes.""" lst = s.split(".") klass = lst[-1] mod_list = lst[:-1] module = ".".join(mod_list) try: mod = __import__(module) if hasattr(mod, klass): return getattr(mod, klass) ...
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def with_(context, *args): """:yaql:with Returns new context object where args are stored with 1-based indexes. :signature: with([args]) :arg [args]: values to be stored under appropriate numbers $1, $2, ... :argType [args]: chain of any values :returnType: context object .. code:: ...
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def removeDoubleVertexesAlternative(V): """ alternativte removing of doublefaces. Hopefully more memory efficient """ X = range(len(V)) # Vs = [v for (v, x) in VIsorted] # Is = [x for (v, x) in VIsorted] Vs = [] Is = [0]*len(V) prevv = None i = 0 for [v, x] in sorted(zip(V, ...
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def get_key(text): """return keyword: first word of text, isolating keywords followed by '(' and ':' """ t = text.replace('(', ' (').replace(':', ' :').strip() return t.split(' ', 1)[0].strip()
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def solution_two(numbers: list[int]) -> list[int]: """ timeComplexity: BigO(2n) spaceComplexity: BigO(n) """ total = 1 for n in numbers: total *= n result = [] for n in numbers: result.append(total // n) return result
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from typing import Union from typing import List def read_file(file_path: str, split: bool = False) -> Union[str, List[str]]: """ Reads a text file. >>> from snakypy import helpers >>> file = '/tmp/my_file.txt' >>> helpers.files.create_file('My content file', file, force=True) True >>> he...
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def max_sublist(a_list): """ Kadane's Algorithm >>> max_sublist([-2, 1, -3, 4, -1, 2, 1, -5, 4]) (6, 3, 6) >>> max_sublist([0, -1, 2,- 3, 5, 9, -5, 10]) (19, 4, 7) :param a_list: The list to get the maximum sub-list for. :return: The sum from the sublist, the start index, and the end index....
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import random def generate_social_security_number(): """Randomly generate a social security number. For example: '234 78 9012' Update to reflect state, date of birth info consider: http://www.pnas.org/content/106/27/10975.full.pdf """ number1 = random.randint(1,999) assert number1 > 0 ...
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def get_fold(dict_actors_per_fold, actor_id): """ Get the fold that the actor belongs to. :param dict_actors_per_fold[dict] Map with the fold number as key (ranging from 1 to 5) and the list of actors in that test fold as the value of the dict. :param actor_id:[int] Id of the actor. W...
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def getModel(tsinput): """ This is the wrapper function for all turbulence models implemented in the runInput package. Parameters ---------- tsinput : :class:`tscfg <.base.tscfg>` A TurbSim input object. Returns ------- specModel : A subclass of :class:`.sp...
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def filter_cov_id(pid, cov, *df): """Filters the passed dataframe, returning only rows that meet passed percentage identity and coverage criteria. """ return tuple([d[(d.percentage_identity > pid) & (d.query_coverage > cov) & (d.subject_coverage > cov)] for d in df])
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def intToBinaryString(integer : int) -> str: """Convert an integer to a string representing a big endian binary number Parameters ---------- integer : int A positive integer Returns ------- str A string representing a big endian binary number """ rtn = "" while ...
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def dista10(n): """ seja um inteiro n retorna True se a diferença absoluta entre n e 100 ou n e 200 for menor ou igual a 10 dista10(93) -> True dista10(90) -> True dista10(89) -> False """ if abs(n - 100) <= 10 or abs(n - 200) <= 10: return True return False
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def filter_capabilities_by_languages(bears, languages): """ Filters the bears capabilities by languages. :param bears: Dictionary with sections as keys and list of bears as values. :param languages: Languages that bears are being filtered on. :return: New ...
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import os def get_config_folders(): """Read folder config from environment""" folders = [] for env_key, env_val in os.environ.items(): if env_key.startswith('FOLDER_'): folder_id = env_key.split('_', 1)[1] folder_name = env_val folder_extension = os.getenv(f'EXT...
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import os def filename_maker(name: str, path: str, start_date, end_date) -> str: """ Create the name of the main files Returns: String with the path to save the file. """ return os.path.join(path, name + start_date.replace('-','') + '_' + end_date.replace('-',''))
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def convert_aa_code(three_letter, convert): """ Assumes a string that contains a three letter aminoacid code and returns the corresponding one letter code. """ aa_code = { 'CYS': 'C', 'ASP': 'D', 'SER': 'S', 'GLN': 'Q', 'LYS': 'K', 'ILE': ...
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def expanding_mean(new_value, old_value, time): """ Args: new_value: this time step's value old_value: aggregate from last time step time: current time, zero-indexed Returns: mean from t = 0 : time """ time_1plus = time + 1 return (1. / time_1plus) * new_value + (...
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def _gradient_normalization(grad, non_zero, centralize_gradients=True, normalize_gradients=True): """ substract the mean from the gradient and divide it by its standard deviation `non_zero` is a function that takes an input and insures that it will not be zero or negative """ can_centralize = centra...
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from typing import Callable from typing import Iterable def sort_by_reversed(key: Callable): """Return a new list containing all items from the iterable in descending order, sorted by a key. >>> sort_by_reversed(lambda x: x % 10)([2231, 47, 19, 100]) [19, 47, 2231, 100] """ def sort_by_reversed(s...
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from multiprocessing import Process, Queue import traceback import functools def pl_multi_process_test(func): """Wrapper for running multi-processing tests.""" @functools.wraps(func) def wrapper(*args, **kwargs): queue = Queue() def inner_f(queue, **kwargs): try: ...
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import itertools def is_sorted(iterable, *, key=None, reverse=False, strict=False): """Returns true if iterable is sorted Parameters ---------- iterable : iterable The iterable to check for sorted-ness. key : x -> y, optional Apply mapping function key to iterable prior to checkin...
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from typing import Dict from typing import Tuple def _has_all_valid_descriptors(peak_descriptors: Dict[str, float], filters: Dict[str, Tuple[float, float]]) -> bool: """ Check that the descriptors of a peak are in a valid range. aux function of get_peak_descriptors. Pa...
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import torch def dist2(feat_a, feat_b): """ Args: feat_a: the feature of image_a feat_b: a list of features, on a list of images Return: dist: a list, which means a list of distances between feat_a and each one in feat_b """ dist=[] feat_a = torch.FloatTensor(feat_a) for i in range(len(feat_...
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import argparse def validate_color_temperature(s: str) -> int: """Validate color temperature argument.""" try: value = int(s) except ValueError: raise argparse.ArgumentTypeError(f"{s} is not an integer") if value < 2900 or value > 7000: raise argparse.ArgumentTypeError( ...
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import re def rlist_to_int(string): """Takes an rlist string as input, and outputs a corresponding integer""" rlist = 0 string = re.sub(r"r|R", "", string) for m in re.finditer(r"[^,]+", string): args = m.group().split("-") if len(args) == 1: lo,hi = args*2 else: lo,hi = args ...
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def interpolate_template(template, context): """Interpolate context into a template. (i.e. replace things in strings without % replacement). Args: template (str) : String to fill with context context (dict) : Dictionary of variables Returns: str : Populated template """ ...
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def accepts(source): """ Test if source matches a Twitter handle """ # If the source equals the plugin name, assume a yes if source["type"] == "twitter": return True # Default to not recognizing the source return False
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def get_qualifiers(qualifiers): """ get qualifiers, if exist and returns a dict of "qualifier_name: data" - pairs """ qualifiers_dict = dict() if qualifiers is not None: qualifiers = qualifiers if isinstance(qualifiers, list) else [qualifiers] for qualifier in qualifiers: ...
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def make_enum_pair(ele, till, delimiter=", "): """ Create list of pair of strings with consecutive numbering as follows: make_enumerated_pair('P%d p%d', 3) -> 'P1 p1, P2 p2, P3 p3' """ return delimiter.join(ele % (i + 1, i + 1) for i in range(till))
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def convert_dtw_struc_dist(distances, start_layer=1): """ Convert :param distances: dict of dict :param start_layer: :return: """ for vertices, layers in distances.items(): keys_layers = sorted(layers.keys()) start_layer = min(len(keys_layers), start_layer) for layer ...
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def average(keyword, values): """ calculate average of all values at values[+].keyword and return :param keyword: the key of the value you care about :param values: [{key: value},...] array of dicts, values assumed numeric :return: single averaged value """ average = 0.0 for val in value...
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import os def _file_size_is_valid(sequence_file, minimum_file_size): """ Performs a os.path.getsize operation on the sequence file(s) on the sequence_file object if any files are less than the file minimum, return false, else return true :param sequence_file: SequenceFile object :param minimum_fi...
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def can_collapse(row): """ returns true if the given row can be collapsed to the left can also be a column """ for a,b in zip(row[1:], row): if a==0: continue if b==0 or a==b: return True return False
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def transition_required(*transitions): """ Permission factory that requires that current user has access to at least one of the transitions and at the same time has ``required`` permission (or factory). If the required permission is not set, it is considered as true. If it is callable, it is called at ...
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def get_count(inputStr): """ Return the number (count) of vowels in the given string. We will consider a, e, i, o, and u as vowels for this Kata. The input string will only consist of lower case letters and/or spaces. :param inputStr: input string value. :return: the number (count) of vowels in ...
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import random def random_bit_value(): """Returns random bit""" return random.randint(0, 1)
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def fractional_basal_area_by_species(data): """For group of trees, calculate the fraction total basal area represented by each species""" # cast to str so can store sparsely :) fractional_ba = ( ( data.groupby(data["SPCD"].astype(str)).unadj_basal_area.sum() / data.unadj_basa...
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def subDict(somedict, somekeys, default=None): """ Returns subset of a dictionary with keys from somekeys """ return dict([ (k, somedict.get(k, default)) for k in somekeys ])
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def qset_cmb_box(cmb_box, string, data=False): """ Set combobox to the index corresponding to `string` in a text field (data = False) or in a data field (data=True). When `string` is not found in the combobox entries, select the first entry. Signals are blocked during the update of the combobox. ...
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def parse_f90idx(tokens, t, prior_t): """Parse Fortran vector indices into a tuple of Python indices.""" idx_end = (',', ')') v_name = prior_t v_indices = [] i_start = i_end = i_stride = None # Start index t = next(tokens) try: i_start = int(t) t = next(tokens) exc...
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from typing import Iterator import itertools def decimal(start: int = 1) -> Iterator[int]: """ Increments from `start`. e.g. 1, 2, 3, .. 9, 10, 11, etc. Args: start: The first value to start with. """ return itertools.count(start)
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def lunar_add(n, m): """lunar addition""" sn, sm = str(n), str(m) l = max(len(sn), len(sm)) return int("".join(max(i, j) for i, j in zip(sn.rjust(l, "0"), sm.rjust(l, "0"))))
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def get_rendered(font, text, color, cache): """Simple font renderer that caches render.""" if text in cache: image = cache[text] else: image = font.render(text, 0, color) cache[text] = image return image
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def adv_word_probs_for_rev(rev, td): """ Return adversarial word probabilities for the reviewer """ # Get topics for the reviewer rev_top_list = td.rev_top[rev.name()] wds_prob = {} for t_id, t_prob in rev_top_list[:3]: # Get words contributing to each topic t_wds = td.top_wd...
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import math def angle_to(tup1,tup2): """The angle to tup2 from tup1, measured against 'straight up' clockwise, in radians. Tuples are given in a coordinate system with (0,0) top left, (1,0) is one step right, (0,1) is one step down, and (1,1) is down right. >>> angle_to((1,1),(1,0))/math.pi 0.0 ...
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def OkErrMiss(o): """ compute Ok, errors, missed from the ResultStructure object return a triple (ok, err, miss) """ ok = o.truePos err = o.resTotal - ok miss = o.gtTotal - ok return ok, err, miss
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def solution(A): """ DINAKAR Idea is xor of two same numbers produces 0 x = 3 (011) and y = 3 (011) is 000 at the end single numbers left in xor variable. :return: """ xor = 0 for item in A: xor ^= item return xor
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import re def filter_partheading(line): """ Removes 'part 4 / The New World' :param line: :return: """ line = line.strip() m = re.search("part \d+ \/", line) if m: return None return line
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import logging def featurize_data(model, array): """ Given a model and an array, perform error checking and return the prediction of the full feature array. Parameters: ---------- model : keras.models.Model The featurizer model performing predictions array : np.ndarra...
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def init_params(): """Set up the simulation parameters.""" p = {} p['endYear'] = 2040 p['statsCollectFrom'] = 1990 p['numberPolicyParameters'] = 4 p['numberScenarios'] = 9 p['implementPoliciesFromYear'] = 2020 p['discountingFactor'] = 0.03 return p
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def get_vector(model, line): """ 获得文章的向量 :param final: list :return: final: list """ vec = model.infer_vector(line) return vec
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