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import os def generate_doxygen_report(branch_name, src_dir): """ Given a branch name and the source directory of the project this function generates a doxygen summary for documented code. """ doc_summary_file = f"doc-summary-{branch_name}.info" # Produce coverxygen report to produce the coverage ...
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def get_new_lp_file(test_nr): """ Get name of new LP file """ return "test/{0}-new.lp".format(test_nr)
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def tokenize(tokenizer, data, max_length = 128): """ Iterate over the data and tokenize it. Sequences longer than max_length are trimmed. :param tokenizer: tokenizer to use for tokenization :param data: list of sentences :return: a list of the entire tokenized data """ tokenized_data = [] ...
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import torch def empty_like(input_, dtype): """Wrapper of `torch.empty_like`. Parameters ---------- input_ : DTensor Input dense tensor. dtype : data-type Data type of output. """ return torch.empty_like(input_._data, dtype=dtype)
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import logging def find_log_path(lg): """ Find the file paths of the FileHandlers. """ out = [] for h in lg.handlers: if isinstance(h, logging.FileHandler): out.append(h.baseFilename) return out
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import requests def send_proms_pingback(pingback_target_uri, payload, mimetype='text/turtle'): """ Generates and posts a PROMS pingback message :param pingback_target_uri: a URI, to where the pingback is sent :param payload: an RDF file, in one of the allowed formats and conformant with the PROMS pin...
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import re def expand_zoo_variables(custom_env, string_to_process): """ развернуть в строке переменные окружения zoo поискать в строке '%KEY%' если есть то заменить на соответсвующее значение из словаря и так для каждого ключа в словаре :param string_to_process: :return...
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import torch def estimate_grad_moments(xloader, network, criterion, steps=None): """Estimates mean/sd of gradients without any training steps inbetween - this gives the total_XXX kind of estimators which are only evaled once per epoch on the whole dataset""" with torch.set_grad_enabled(True): network.eval() ...
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import random def generate_fake_ohlc_data(data_df): """ Generates fake ohlc data for each row of twitter sentiment dataframe. Used for testing without creating database or making api calls to finnhub. Args: data_df: Dataframe containing time and twitter sentiment socres for each currency ...
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def home(): """List all available api routes.""" return ( f"Welcome to Honolulu, Hawaii's Climate Home Page:<br/>" f"Available Routes:<br/>" f"<br/>" f"List of Precipitation Data with Corresponding Dates:<br/>" f"/api/v1.0/precipitation<br/>" f"<br/>" f"Li...
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def sign(x): """ Sign function """ return 1 if x >= 0 else -1
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def is_selection_within_a_line(view): """Returns true if the selection is within single line, but not zero-width.""" selection = view.sel() if len(selection) == 0: # Null selection return False # selection_coverage will be the region that covers all selections. selection_coverage = s...
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import sys def _echo_args(string): """cross-platform args for echoing a string""" if sys.platform.startswith("win"): return ["cmd", "/c", "echo", string] else: return ["echo", string]
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def dict_hangman(num_of_tries): """ The function return the "photo" of the hangman. :param num_of_tries: the user's number of guessing :type num_of_tries: int :return: the photo of the hangman :rtype: string """ HANGMAN_PHOTHOS = { '1': """ x-------x""", '2': """ x-------x | | | | |""", '3': """ ...
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def build_void(lines, start, end): """ Builds a void from the given parameters. Parameters ---------- lines : `list` of `str` The lines of the section. start : `int` The starting index of the void. end : `int` The void's last line's index +1. Returns -------...
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import numpy as np def random_complex_matrix(matrix_size): """ Generate a random, square, complex matrix of size `matrix_size`. """ return (np.random.rand(matrix_size, matrix_size) + 1j * np.random.rand(matrix_size, matrix_size))
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def split_warnings_errors(output: str): """ Function which splits the given string into warning messages and error using W or E in the beginning of string For error messages that do not start with E , they will be returned as other. The output of a certain pack can both include: ...
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def _get_type_and_value(entry): """Parse dmidecode entry and return key/value pair""" r = {} for l in entry.split('\n'): s = l.split(':') if len(s) != 2: continue r[s[0].strip()] = s[1].strip() return r
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def _replace_strings(obj, old, new, inplace=False): """ Recursively replaces all strings in the given object. This function is specifically meant to help with saving and loading of config dictionaries and should not be considered a general tool. """ if not inplace: obj = obj.copy() ...
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def hello_world() -> str: """ Say something! """ return "Hello World!"
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def range_geometric_row(number, d, r=1.1): """Returns a list of numbers with a certain relation to each other. The function divides one number into a list of d numbers [n0, n1, ...], such that their sum is number and the relation between the numbers is defined with n1 = n0 / r, n2 = n1 / r, n3 = n2 / r...
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import hashlib def getIdHash(id): """ Return md5 prefix based on id value""" m = hashlib.new('md5') m.update(id.encode('utf8')) hexdigest = m.hexdigest() return hexdigest[:5]
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def reverse_and_collapse(in_str: str) -> str: """ Solution: Iterate backwards and copy chars to a new string if they don't equal the last char of that new string. Time: O(n) -> Iterate every char Space: O(n) -> Construct another string with max size = length of input string """ if not in_str: raise ValueError...
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def exists(_env): """Always activate this tool.""" return True
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import os def create_id2amendment_info(path, tag): """Searches for JSON files in this repo and returns a map of amendment id ==> (`tag`, dir, amendment filepath) where `tag` is typically the shard name """ d = {} for triple in os.walk(path): root, files = triple[0], triple[2] f...
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def norm_layer_name(name): """Some heuristics to normalize a layer name from multiple sources. For example, some depictions of VGG-16 use use upper case; others use lower case. Some use hyphens; others use underscores. These heuristics are by no means complete, but they increase the likelihood that...
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def square_dist(x, y, dim=1): """ """ return (x-y).pow(2).sum(dim=dim)
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def S_inverse_values(_data_list, _infinity_value='inf'): """ Returns data samples where values are inversely proporsional. """ i_data = [] ds = len(_data_list) for i in range(ds): if _data_list[i] == 0: i_data.append(_infinity_value) if _data_list[i] == _infinity...
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def findPayload(message, type): """ Find a payload/part that matches a type as closely as possible and decode it properly. Parameters ---------- message : email.message.Message The message to search. type : str A MIME type. Returns ------- str The payload as a string. """ charset =...
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import csv def calculate_number_of_synthetic_data_to_mix(original_data_file, target_ratio): """Calculate the number of negative samples that need to be added to achieve the target ratio of negative samples. Args: original_data_file: path to the origi...
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def GenerateId_base10(hash_sha512, input_file): """ Implement asset id of input file for base10 format @param hash_sha512: string to encode @param input_file: input file to encode """ string_id = int(hash_sha512.encode("hex_codec"), 16) return string_id
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import json def global_weight(criterion, report): """ Formula: Global Weight = Criterion W value / Criterion Count For example: W Value = 1 Criterion Count = 5 Global Weight = 1 / 5 = 0.2 """ criterion_count = criterion['parent']['count'] data = report.criterion_compare[str(cr...
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def pickChromosomes(selection='A'): """ Selects the chromosomes you want to overlap. :param selection: A(autosomes), AS (Auto+Sex), or ASM (Auto+Sex+M) :return: chrList """ chrList = [ '1', '2', '3', '4', '5', '6', '7', '8', '9', '10', '11', '12', '13', '14', '15', ...
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def get_contact_info_keys(status_update): """Returns the contact info method keys (email, sms) used to send a notification for a status update if the notification exists. Returns [] if there is no notification """ if hasattr(status_update, 'notification'): return list(status_update.notificat...
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async def _wtforms_base_form_validate(self, extra_validators=None): """ Validates the form by calling `validate` on each field. :param extra_validators: If provided, is a dict mapping field names to a sequence of callables which will be passed as extra validators to the field's `val...
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def binary_search(input_list, number, min_idx, max_idx): """ Find the index for a given value (number) by searching in a sorted array Time complexity: O(log2(n)) Space Complexity: O(1) Args: - input_list(array): sorted array of numbers to be searched in - number(int)...
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def get_goal_status(goal): """ 1 = Success 2 = Rejected 3 = Locked """ print(goal.is_closed) if goal.is_closed: if goal.was_accomplished: return 1 else: return 2 return 3
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import torch def _calculate_ece(logits, labels, n_bins=10): """ Calculates the Expected Calibration Error of a model. (This isn't necessary for temperature scaling, just a cool metric). The input to this loss is the logits of a model, NOT the softmax scores. This divides the confidence outputs int...
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def floor_div_mul(value, factor): """Fuction to get floor number.""" return (((value) // (factor))) * (factor)
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def history_parser(arg): """ @param: arg is a string that contains the words seperated by spaces @return: Returns two strings. The first word removed from arg and everything after the space """ v = -1 try: v = arg.index(' ') except ValueError: return None, None first_word...
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def _to_scanner(varr): """Transform data to scanner coordinate space by properly swapping axes Standard vnmrj orientation - meaning rotations are 0,0,0 - is axial, with x,y,z axes (as global gradient axes) corresponding to phase, readout, slice. vnmrjpy defaults to handling numpy arrays of: ...
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def select_clause(table_name, *fields, distinct=False): """ Create a select from clause string for SQL. Args: table_name: The table to select from as string. *fields: The fields to select. Returns: A string with the crafted clause. """ select = ...
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import pandas as pd import math def removeMissing(filename): """Takes a file that contains missing scans and removes those rows, while providing the subject name and reason for removal.""" loaded_file = pd.read_csv(filename) cleaned_list = [] missing_counter = 0 for row in loaded_file.index: ...
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import json def decode(body): """decode string to object""" if not body: return None return json.loads(body)
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def _remove(s, e): """Removes an element from the set. Element must be hashable. This mutates the orginal set. Args: s: A set, as returned by `sets.make()`. e: The element to be removed. Returns: The set `s` with `e` removed. """ s._values.pop(e) return s
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def bintodec(x): """Convert Binary to Decimal. Input is a string and output is a positive integer.""" num = 0 n = len(x) for i in range(n): num = num + 2 ** i * int(x[n - i - 1]) return num
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import collections def _create_gt_string(cnv_row): """ Creates VCF gt string for a single-sample VCF. """ gt_dict = collections.OrderedDict() gt_dict["GT"] = cnv_row.GT gt_dict["S"] = cnv_row.S gt_dict["NS"] = cnv_row.NS gt_dict["LS"] = cnv_row.LS gt_dict["LNS"] = cnv_row.LNS ...
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def generate_name_Id_map(name, map): """ Given a name and map, return corresponding Id. If name not in map, generate a new Id. :param name: session or item name in dataset :param map: existing map, a dictionary: map[name]=Id :return: Id: allocated new Id of the corresponding name """ if name...
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def _get_datasource_type(): # filepath): """ Determine if the input is from a local system or is an s3 bucket Not needed now, but will need to use for cloud data access """ source_types = ["is2_local", "is2_s3"] return source_types[0]
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import argparse import os def parse_args(): """Parse input arguments """ parser = argparse.ArgumentParser(__doc__) parser.add_argument( '--lcdc_results', type=str, help='File containing results') parser.add_argument( '--tcn_results', type=str, help='File containing ...
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def IdentityLayer(inp, inp_dim, outp_dim, vs, name="identity_layer", use_bias=True, initializer=None): """An identity function that takes the same parameters as the above layers.""" assert inp_dim == outp_dim, "Identity layer requires inp_dim == outp_dim." return inp
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def format_text_to_html(text: str): """ realiza el formato del texto pasado a un formato html""" html_txt = text.replace("<", '&lt;') html_txt = html_txt.replace(">", '&gt;').replace("\n", '<br>') html_txt = html_txt.replace("\t", '&#9;') html_txt = html_txt.replace(" ", '&nbsp;') return html_tx...
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import torch def batch_uv_to_global_with_multi_depth(uv1, inv_affine_t, inv_cam_intrimat, inv_cam_extri_R, inv_cam_extri_T, depths, nbones): """ :param uv1: :param inv_affine_t: hm -> uv :param inv_cam_intrimat: uv -> norm image frame :param inv_cam_extri_R...
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def predict_classification(tree, labels, test): """Predict the classification for a test.""" if isinstance(tree, dict): node, node_choices = tree.popitem() feature = node_choices[test[labels.index(node)]] result = predict_classification(feature, labels, test) else: result = t...
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def find_sentence(sentence_list, taggedspan, filename): """ Find the sentence index that corresponds with the span. Keyword arguments: sentence_list: list -- list of all sentences in the note (list) taggedspan: the span of the annotation (list) filename: the name of the file (string) """ ...
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import re def eqauls_or_matches(s, str_or_regex): """Returns true or regex match. """ _type = type(re.compile('')) if isinstance(str_or_regex, _type): return re.match(str_or_regex, s) elif s == str_or_regex: return True
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import sys import os def silent_execute( string, return_stderr=True): """ Execute the given shell adding '> /dev/null' if under a posix OS and '> nul' under windows. """ if sys.platform.startswith('win') or return_stderr: return os.system(string + " > " + os.devnull) else: ret...
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def _flatten_task(obj): """Flatten the structure of the task into a single dict """ data = { 'id': obj.id, 'checkpoint_id': obj.checkpoint_id, 'policy_id': obj.policy_id, 'provider_id': obj.provider_id, 'vault_id': obj.vault_id, 'vault_name': obj.vault_name, ...
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async def claptext(memereview): """Praise people!""" textx = await memereview.get_reply_message() message = memereview.pattern_match.group(1) if message: pass elif textx: message = textx.text else: return await memereview.edit( "`Lord, Mohon Balas Ke Pesan Ora...
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import itertools def prev_this_next(it): """ iterator to gradually return three consecutive elements of another iterable. If at the beginning or the end of the iterable, None is returned for corresponding elements. """ a, b, c = itertools.tee(it, 3) next(c) return zip(itertools.chain([...
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def parse_unity_results(output): """Read output from Unity and parse the results into 5-tuples: (file, lineno, name, result, message)""" result = [] lines = output.split('\n') for line in lines: if line == '': break parts = line.split(':', maxsplit=4) if len(parts...
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async def looped_fetch(fetch, query): """using the async fetch method of a deta Base instance return the first match of the specified query, or None if no match is found. :param fetch: async fetch method :param query: query object for which to fetch results :return: value matching the query or None...
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def without_duplicates(duplicates, similar_songs): """Creates a list that only includes those strings which occur once in the similar_songs list. Args: duplicates: Usually the list that is the return list of get_duplicates. similar_songs: Usually the list that is the return list of ...
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def airports_codes_from_city(name, airports_list, airport_type): """ Here we finding all airports(their codes) in city or state. :param name: name of airport we gonna check :param airports_list: list of all airports :param airport_type: type of :param name: - 'code', 'city', 'state' ...
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from tqdm import tqdm def _get_iterator(to_iter, progress): """ Create an iterator. Args: to_iter (:py:attr:`array_like`): The list or array to iterate. progress (:py:attr:`bool`): Show progress bar. Returns: :py:attr:`range` or :py:class:`tqdm.std.tqdm`: Iterator object. ...
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def safer_getattr(object, name, default=None, getattr=getattr): """Getattr implementation which prevents using format on string objects. format() is considered harmful: http://lucumr.pocoo.org/2016/12/29/careful-with-str-format/ """ if isinstance(object, str) and name == 'format': raise No...
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def check_replication(service, service_replication, warn_range, crit_range): """Check for sufficient replication of a service :param service: A string representing the name of the service this replication check is relevant to. :param service_replication: An in...
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import json def load_metadata(filename): """Read json from file and return json object.""" with open(filename, encoding="utf-8") as fd: return json.load(fd)
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def compare_question_answer(response, question_id, value): """ Return whether a question has the required ``value``. Return a sympy boolean. """ answer = response[question_id] return str(answer) == str(value)
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def get_section_number(data): """Gets the section number from the given section data Parses the given array of section data bytes and returns the section number. SI tables come in sections. Each section is numbered and this function will return the number of the given section. """ return data[6]
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import os def match_superpmi_tool_files(full_path): """ Match all the SuperPMI tool files that we want to copy and use. Note that we currently only match Windows files. """ file_name = os.path.basename(full_path) if file_name == "superpmi.exe" or file_name == "mcs.exe": return True ...
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def denumpyfy(tuple_list_dict_number): """A nested structure of tuples, lists, dicts and the lowest level numpy values gets converted to an object with the same structure but all being corresponding native python numbers. Parameters ---------- tuple_list_dict_number : tuple, list, dict, number ...
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def _get_nn_for_timestamp(kd_tree, X, timestep, aso_idx, k, radius): """Returns the nearest ASOs to the provided `aso_idx` ASO. If a `radius` is provided then the results are all the ASOs within that given radius, otherwise the results are the `k` nearest ASOs :param kd_tree: The KD-tree build for the...
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def get_uid(): """Inquiry UID hack for RBAC """ return 'inquiry'
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import os def _check_if_folder_exists(folder: str) -> None: """Auxiliary function. Check if folder exists and create it if necessary.""" if not os.path.isdir(folder): os.mkdir(folder) return None
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def get_value_or_404(json: dict, key: str): """ If a key is present in a dict, it returns the value of key else None.""" try: return json[key] except BaseException: # print(f'{key} not found') return None
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def _poynting(field): """Computes poynting vector from the field vector""" tmp1 = (field[0].real * field[1].real + field[0].imag * field[1].imag) tmp2 = (field[2].real * field[3].real + field[2].imag * field[3].imag) return tmp1-tmp2
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import socket def tcp_port_reachable(addr, port, timeout=5): """ Return 'True' if we could establish a TCP connection with the given addr:port tuple and 'False' otherwise. Use the optional third argument to determine the timeout for the connect() call. """ s = socket.socket(socket.AF_INE...
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def scale_wind_speed(spd, scale_factor: float): """ Scales wind speed by the scale_factor :param spd: Series or data frame or a single value of wind speed to scale :param scale_factor: Scaling factor in decimal, if scaling factor is 0.8 output would be (1+0.8) times wind speed, if it is -0.8 the ou...
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import shutil def verbose_copy(src, dst): """复制文件(属性和内容均一致)""" print("copying {!r} to {!r}".format(src, dst)) return shutil.copy2(src, dst)
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def transform_dict(img): """ Take a raster data source and return a dictionary with geotranform values and keys that make sense. Parameters ---------- img : gdal.datasource The image datasource from which the GeoTransform will be retrieved. Returns ------- dict A di...
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def delta(evt): """Modified delta to work with all platforms.""" if evt.num == 5 or evt.delta < 0: return -1 return 1
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def path_parts(path): """Returns a list of all the prefixes for this document's [snoop.data.digests.full_path][]. This is set on the Digest as field `path-parts` to create path buckets in Elasticsearch. """ elements = path.split('/')[1:] result = [] prev = None for e in elements: ...
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def read_list(filename): """ Read file line by line, ignoring lines starting with '#' Parameters ---------- filename : str or pathlib.Path Returns ------- list """ with open(filename, 'r') as f: lines = f.readlines() return [line.rstrip('\n') for line in lines if n...
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def norm_factory(v_min, v_max): """Creates a normalisation function for scores""" v_range = v_max - v_min def norm(val): return (val - v_min) / v_range return norm
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import pickle def read_pkl_file(fpath): """ """ with open(fpath, "rb") as f: return pickle.load(f)
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def tokenize(text, re_, ignore): """tokenize an email template""" tokens = [] pos = 0 match = re_.match(text) while pos < len(text): typ = match.lastgroup if typ in ignore: pos = max(match.end(), pos + 1) elif typ == 'BODY': tok = text[pos:] ...
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import pathlib import os def _get_auth_directory() -> pathlib.Path: """Find the first valid and specified AWS credentials directory.""" if creds_path := os.environ.get("AWS_SHARED_CREDENTIALS_FILE"): return pathlib.Path(creds_path).expanduser().parent.absolute() if config_path := os.environ.get("...
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def get_trunc_minute_time(obstime): """Truncate obstime to nearest minute""" return((int(obstime)/60) * 60)
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import subprocess def version(): """Generate version using oorb script.""" cmd = ['./build-tools/compute-version.sh'] return subprocess.check_output(cmd, cwd='oorb').decode().strip()
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def process_proc_output(proc, print_output=True): """Print output of process line by line. Returns the whole output.""" def _print(s): if print_output: print(s) lines = [] for line in iter(proc.stdout.readline, b''): _print('| %s' % line.rstrip()) lines.append(line) return ''.join(lines)
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async def get_owner(group_id: int, bot): """ 获取群主 QQ 号 """ group_info = await bot._get_group_info(group_id=group_id) return group_info['owner_id']
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def make_subtitle(rho_rms_aurora, rho_rms_emtf, phi_rms_aurora, phi_rms_emtf, matlab_or_fortran, ttl_str=""): """ Parameters ---------- rho_rms_aurora: float rho_rms for aurora data differenced against a model. comes from compute_rms rho_rms_emtf: ...
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from typing import List def find_substring_by_pattern( strings: List[str], starts_with: str, ends_before: str ) -> str: """ search for a first occurrence of a given pattern in a string list >>> some_strings = ["one", "two", "three"] >>> find_substring_by_pattern(some_strings, "t", "o") 'tw' ...
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def progress_level_percentage(percentage): """ Progess percentage util. - 0-33 red - 34-66 yellow - 67-100 green """ _percentage = int(percentage) if 0 < _percentage <= 33: level = 'danger' elif 34 <= _percentage <= 66: level = 'warning' elif _percentage >= 67: ...
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from typing import Callable def curry_explicit(function: Callable, arity: int) -> Callable: """ :param function: function to curry :param arity: int positive value of wanted function arity :return: curried function """ if arity < 0: raise ValueError("Arity can not be negative number") ...
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def noramlize_data(df): """ Normalizes the data by subtracting the mean and dividing by the max - min. :param df: the dataframe that we are normalizing :return: the normalized dataframe """ df_normalized = (df - df.mean()) / (df.max() - df.min()) return df_normalized
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def rdg(edges, gtype): """Reduce graph given type.""" if gtype == "reftype": return edges[(edges.etype == "EVAL_TYPE") | (edges.etype == "REF")] if gtype == "ast": return edges[(edges.etype == "AST")] if gtype == "pdg": return edges[(edges.etype == "REACHING_DEF") | (edges.etype ...
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def create_custom_backbone(model_name, num_classes): """ 加载自定义网络 model_name: 网络名称 eg:"ClassNet" num_classes: 网络输出 """ # 加载指定网络 method = eval(model_name) return method(num_classes)
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def filter_packets_by_filter_list(packets, filter_list): """ :param packets: Packet list :param filter_list: Filters with respect to packet field :type filter_list: list of pyshark_filter_util.PySharkFilter :return: Filtered packets as list """ filtered_packets = [packet for packet in packe...
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