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def grant_url(focus_area, month): """Use the focus area and donation date information to get the original grant URL.""" fa = { "community-development": 13, "education-youth": 28, "religion": 11, }[focus_area] month_param = month[2:] return f"https://lillyendowment.org/for-cu...
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def parse_srg(srg_filename): """Reads a SeargeRG file and returns a dictionary of lists for packages, classes, methods and fields""" srg_types = {'PK:': ['obf_name', 'deobf_name'], 'CL:': ['obf_name', 'deobf_name'], 'FD:': ['obf_name', 'deobf_name'], 'MD:': ['o...
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import random def choose(bot, trigger): """.choice option1|option2|option3 - Makes a difficult choice easy.""" if not trigger.group(2): return bot.reply('I\'d choose an option, but you didn\'t give me any.') choices = [trigger.group(2)] for delim in '|\\/, ': choices = trigger.group(2)...
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from typing import List def primes(max: int) -> List[int]: """ Return a list of all primes numbers up to max. >>> primes(10) [2, 3, 5, 7] >>> primes(11) [2, 3, 5, 7, 11] >>> primes(25) [2, 3, 5, 7, 11, 13, 17, 19, 23] >>> primes(1_000_000)[-1] 999983 """ max += 1 nu...
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def current_user(self): """Get current user""" return self.handler.current_user
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import torch from typing import Tuple def _split_crossval(xy: torch.Tensor, crossval_count: int, crossval_index: int) -> Tuple[torch.Tensor, torch.Tensor]: """ Generates a split of the given dataset along the first dimension for cross-validation. :param xy: The data that should be split. The split will b...
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from typing import Optional from typing import Any from typing import List from typing import Iterable def as_list(value: Optional[Any]) -> List[Any]: """Normalizes the value input as a list. >>> as_list(None) [] >>> as_list("foo") ['foo'] >>> as_list(123) [123] >>> as_list(["foo", "b...
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def unique_proportion(_metrics): """Computes the proportion of unique non-null values out of all non-null values""" total_values = _metrics.get("table.row_count") unique_values = _metrics.get("column.distinct_values.count") null_count = _metrics.get("column_values.nonnull.unexpected_count") # Ensur...
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import math def signed_distance_point_to_line(a, b, c, p): """ Distance between a point p and a line defined by a, b and c. a, b, c: the line $x + by + c = 0$ p: the point """ d1 = (a*p[0] + b*p[1] + c) d2 = math.sqrt(math.pow(a, 2.) + math.pow(b, 2.)) #d = abs(d1)/d2 d = d1/d2 ...
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import yaml def validate_spackyaml(filename): """ Ensure that a spack.yaml file has a spack or env directive """ try: with open(filename, "r") as fd: data = yaml.load(fd, Loader=yaml.FullLoader) if "env" not in data and "spack" not in data: return False ...
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def ResetStNum(N=0): """Reset the state numbering counter. """ global NXTSTATENUM NXTSTATENUM = N return NXTSTATENUM
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import binascii def bytes_str(val): """ Converts bytes into hex string. Returns: hex string """ assert isinstance(val, (bytes, bytearray)) return binascii.hexlify(val).decode('ascii')
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def pull_key(key_fun): """Return a new dict with members of objs as values and values generated by key_fun as keys. pull_key(key_fun)(objs) :: Hashable K => (X -> K) -> Seq[X] -> {K : X} Equivalent to the following in Python 3: {key_fun(v):v for v in objs} >>> from operator import itemgett...
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import re def word_tokenizer(sentence): """ 将一句话分成单词的列表, 会顺便承担清除标点符号的工作 Parameters ---------- sentence : string Returns -------- words : the list of word """ solve_sentence = re.sub(r'\W+|\s+', ' ', sentence) words = solve_sentence.lower().strip(' ').split(' ') return...
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def flatten(list_of_lists: list) -> list: """Given a list of lists, flatten all the items into one list. >>> flatten([ [1, 2, 3], [4, 5, 6]]) [1, 2, 3, 4, 5, 6] """ return [val for sublist in list_of_lists for val in sublist]
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def timeseries_train_test_split(df, test_size=0.2, gap=0, ascending=True): """Split DataFrame or matrices into random train and test subsets for timeseries Parameters ---------- df : pd.DataFrame, shape (n_samples, n_features) Training data, where n_samples is the number of samples an...
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def list_to_string(l): """ Converts a string list in to a string @param l is the string list @returns a concatentation of each element in the list """ res = "" for elem in l: res += elem return res
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def is_aware( time_point): """ Return whether ``time_point`` is aware of the timezone """ return time_point.tzinfo is not None and \ time_point.utcoffset() is not None
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import logging from pathlib import Path def get_filelist(paths: list[str], recursive: bool = False) -> list[str]: """Get a list of files (but not directories) from a path. Args: paths (list[str]): The path(s) to search for files. recursive (bool, optional): Whether to recursively search the p...
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import re def size2integer(value): """Try to convert a string representing a size to an integer value in bytes. Supported formats: * K|k for KB * M|m for MB * G|g for GB :param value: the string to convert :return: the corresponding integer value """ m = re.match("(\d+)\s*(\w...
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def find_domain_zone_matches(domains, zones): """ Finds matches between Amazon SES verified domains and Route 53 hosted zones. Subdomain matches are taken when found, otherwise root domain matches are taken. :param domains: The list of domains to match. :param zones: The list of hosted zones to mat...
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def format_seconds(s): """ Format a seconds value into a human-readable form """ years, s = divmod(s, 31556952) min, s = divmod(s, 60) h, min = divmod(min, 60) d, h = divmod(h, 24) return '%sy, %sd, %sh, %sm, %ss' % (years, d, h, min, s)
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def sanitize_string(input_string): """Removes unwanted characters from a string and returns the result """ return input_string.replace('"', '')
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def parse_distro_info_path(path): """Break distro_info path into repo + file""" path = path.strip().rsplit("/", 1) info_repo = path[0] info_file = path[1] remote = False if info_repo.startswith("http"): remote = True return info_file, info_repo, remote
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import math def volatilization_rate(k, mass, dz, dt): """ Compute the transfer of the volatilization (kg/s) source : (“CHEMMAP technical User’s manual 6.10,” 2014) params ------ k : volatilization coefficient [m/s] dz : vertical diffusivity [m²/s] dt : length of a timestep [s] mas...
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def _FlattenToScoresList(config_param_score_dict): """Extracts a list of scores from input data structure. Args: config_param_score_dict: of the form {'capture_name': {'param_name' : score_value,.. } ..} Returns: Plain list of all score value present in input data structure """ result = [] ...
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def filter_dataset(dataset, filter_indices): """ Filter a dataset consisting of a dictionary for the different variables by a vector of True/False indicating if the data point (a row index) should be kept or not. Returning a copy to leave the original dataset untouched. """ dataset_copy = datase...
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from typing import Mapping def check_dict_nested_attrs(item: Mapping, dict_data: Mapping) -> bool: """ Checks the values from `dict_data` are contained in `item` >>> d = {'a': 1, 'b': {'c': 2}} >>> check_dict_nested_attrs(d, {'a': 1}) True >>> check_dict_nested_attrs(d, {'b': {'c': 2}}) True ...
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import itertools def is_almost_simplicial(G, n): """Determines whether a node n in G is almost simplicial. Parameters ---------- G : NetworkX graph The graph on which to check whether node n is almost simplicial. n : node A node in graph G. Returns ------- is_almost_s...
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import csv def create_csv_table(table_path, rows_list): """Create csv file from list of lists. Args: table_path (str): file path to table. rows_list (list): nested list of elements to write to table. Returns: table_path (str): filepath to table. """ with open(table_path, ...
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def processReducedResult(key_value_tuple): """ input: (TW-100917-125717-1537514430, 4.03) output: [TW, 100917, 125717, 1537514430, 4.03] """ values = key_value_tuple[0].split("-") values.append(str(key_value_tuple[1])) return values
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def _split_csv(string): """Split string into a list, excluding empty strings""" if string is None: return [] return [n.strip() for n in string.split(',') if n]
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import random def selectNRandom(nodes, N): """ Selects n random nodes from a list of nodes and returns the list """ random.shuffle(nodes) return nodes[:N]
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def globify_time_descriptors(path): """Convert strftime time descriptors to a glob-compatible expression. For example, convert,'%Y' to '[12][0-9][0-9][0-9]'. Then the glob expression can be used to match path names containing a four digit year. """ path = path.replace('%Y', '[12][0-9][0-9][0-9...
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def MakeTuple(object_): """ Returns the given object as a tuple, if it is not, creates one with it inside. @param: Any object or tuple The object to tupleIZE """ if isinstance(object_, tuple): return object_ else: return (object_,)
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def reorder_exons(exon_ids): """ Reorder exons if they were out of order. Parameters: exon_ids (list of str): List of exons 'chrom_coord1_coord2_strand_exon' Returns: exons (list of str): List of same exon IDs ordered based on strand and genomic location """ strand = exon_ids[0].split('_')[-2] coords = ...
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def get_reaction_from_name(reactions, name): """Return reaction with name. Args: reactions (list(reactions)): the reactions. name (str): name of the desired reaction. Returns: reaction: the corresponding reaction. """ matches = [r for r in reactions if r.name == name] ...
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def extract_sub_ids(file, naive=False, label_of_interest=0): """ Extracts sub_ids from dataset_x.txt files of the following format: SubjectID,Network,Station,Latitude,Longitude,PercentageEarthquakes,PercentageTremor, PercentageNoise,PercentageUnclearEvent Args: file (path): Path to file con...
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def format_api_output(response): """Format retrieved json from API call""" data = response["items"][0] return { "rep": data["reputation"], "gold": data["badge_counts"]["gold"], "silver": data["badge_counts"]["silver"], "bronze": data["badge_counts"]["bronze"], }
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def relativize_paths(root, paths): """ Take a list of fully-qualified paths and remove the root, thus making them relative to something. """ clean_paths = [] for path in paths: clean_paths.append(path.replace("%s/" % root, '')) return clean_paths
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def runner(app): """Using test app, create and return a CLI runner object.""" return app.test_cli_runner()
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def _is_descendant(index, target): """ Return true if index is a parent of target. """ while target.isValid(): if target == index: return True target = target.parent() return False
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def pybtex_unescape(string: str) -> str: """ Reverts the escaping applied by Pybtex. :param str: Input string with pybtex-escape characters. :return: Output string where this has been reverted. """ return string.replace('\\_', '_').replace('\\textasciitilde ', '~')
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def isPointInsideRect(x, y, rect): """ This function determines if the point x, y is within the rectangle rect. Returns TRUE if it is and FALSE if it is not. """ if ((x > rect.left) and (x < rect.right) and (y > rect.top) and (y < rect.bottom)): return True else: ...
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import torch def zero_loss(*args, **kwargs): """Dummy loss that always returns zero. Parameters ---------- args : list Can take any number of positional arguments (without using them). kwargs : dict Can take any number of keyword arguments (without using th...
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def get_attribute_from_tag(tag, attribute): """Returns a xml attribute from a given tag""" element = None try: element = tag.attrib[attribute] except KeyError: pass # print("Error: attribute {} was not defined in this tag.".format(e)) return element
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def fib (n: int) -> int: """ Returns the n'th Fibonacci number. Note that this function uses zero style indexing, meaning that the first Fibonacci number has an index of zero (n=0).""" f_p, f_c= 0, 1 for i in range(n): f_n = f_c + f_p f_p = f_c f_c = f_n return f_c
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def get_project_ids(config, modeling_application): """ Get a list of the ids of models in the source database for a particular modeling application (e.g., XPP) Args: config (:obj:`dict`): configuration modeling_application (:obj:`str`): modeling application (e.g., ``XPP``) Returns: ...
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def construct_filter_based_on_destination(reimbursable_destination_type: str): """ Construct Filter Based on Destination :param reimbursable_destination_type: Reimbusable Destination Type :return: Filter """ filters = {} if reimbursable_destination_type == 'EXPENSE_CATEGORY': filters...
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import random def natural(values, classes=5, maxsize=1000, samples=3): """ Jenks Optimal (Natural Breaks) algorithm implemented in Python. The original Python code comes from here: http://danieljlewis.org/2010/06/07/jenks-natural-breaks-algorithm-in-python/ and is based on a JAVA and Fortran code ...
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def calc_url_by_from_date(url, period1_sec, period2_sec): """This function takes the url and the start and ens periods and insert them in the relevant place in the url """ prefix = url.split('history?', 1)[0] + 'history?' periods = 'period1=' + str(period1_sec) + '&period2=' + str(period2_sec) suffix = ...
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def containsNonAlphaNum(word_list): """ Does list of words contain any special characters? Parameters: word_list: list of words Returns: bool: whether any word in the list contains a special character """ chars = ["-", "_", "."] allow_chars = set(chars) for word in word...
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def graph_codes(dataframe,code): """A function that takes the dataframe, NAICS code(string). Graphs both the original and the LQ of the code using hvplot. Only necessary arguments are dataframe and code. """ return dataframe.hvplot(c= code, tiles='OSM', title= code, alpha=0.6) + dataframe.hvplot(c= 'LQ...
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def _get_user_id_from_session(session): """ Get user's identifier from the session. It could be their id or username since both are unique. """ user_sess_id = session.session_token.get("sub") if user_sess_id: try: user_sess_id = int(user_sess_id) except ValueError: ...
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def str_fsize(sz): """ Formats file size as string (i.e., 1.2 Mb) """ if sz < 1024: return '%.1f bytes' % sz sz /= 1024.0 if sz < 1024: return '%.1f KB' % sz sz /= 1024.0 if sz < 1024: return '%.1f MB' % sz sz /= 1024.0 if sz < 1024: return '%.1f G...
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def get_position_of_one(min: float, max: float) -> float: """ Maps 1.0 value in range min-max to range 0-1 :param min: minimum :param max: maximum :return: """ mm = max - min return (1.0 - min) / mm
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def vector(a, b): """ Return the vector between a and b """ return b - a
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def decode_integer_big_endian_4(frame, start): """ Encode an integer in a byte array using big endian on 4 bytes. Args: frame: Source byte array start: Read start index Returns: Decoded integer value """ return (frame[start] << 24) | (frame[start + 1] << 16) | (frame[start ...
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def adda(a, b, c=0, d=0, e=0): """Add number b to number a. Optionally also add any of numbers c, d, e to the result. """ print(f"Function `adda` called with arguments a={a} b={b}", end="") if c: print(f" c={c}", end="") if d: print(f" d={d}", end="") if e: print(f" e={e}", end="") prin...
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def _looks_like_url(name): """ Function tries to determine if input argument looks like URL and not like S3 bucket name. :param name - input name :return: True, if name looks like URL; False otherwise. """ if name.endswith('.com'): return True if name.find(':') >= 0:...
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import pickle def load_from_file(fn): """ Wczytanie danych zapisanych wcześniej przez save_to_file. :param fn: nazwa pliku. :return: wczytane dane. """ return pickle.loads(open(fn, "rb").read())
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def multi_replace(s, rep_dict): """ Replace multi strings Parameter --------- s: string The string need to be replaced rep_dict: dict The replace patterns, {old: new} Return ------ s: string The replaced string """ for pattern ...
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def generate_gene(base, indexes) -> str: """ Takes a base string and indices of where the base string to be added to the cumulative string and returns constructed gene """ gene = base for i in indexes: gene = gene[:i + 1] + gene + gene[i + 1:] return gene
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import math def get_meansd(values): """Returns mean and standard deviation of the specified values.""" if not values: return float('nan'), float('nan') mean = sum(values) / len(values) sd = math.sqrt(sum([(v - mean) ** 2 for v in values]) / len(values)) return mean, sd
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def get_short_object_id(cid): """return shortened contribution ID (ObjectId) for `cid`. >>> get_short_object_id('5a8638add4f144413451852a') '451852a' >>> get_short_object_id('5a8638add4f1400000000000') '5a8638a' """ length = 7 cid_short = str(cid)[-length:] if cid_short == '0'*lengt...
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def _make_scales(notes): """ Utility function used by Sound class for building the note frequencies table """ res = dict() for note, freq in notes: freq = round(freq) for n in note.split('/'): res[n] = freq return res
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import torch def interp(x: torch.Tensor, xp: torch.Tensor, fp: torch.Tensor) -> torch.Tensor: """Interpolate ``x`` tensor according to ``xp`` and ``fp`` as in ``np.interp``. This implementation cannot reproduce numpy results identically, but reasonable. Code referred to `here <https://github.com/pytorch/...
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def get_pr_labels(pull): """Gets PR labels as set""" pr_lables = set() for label in pull.labels: pr_lables.add(label.name) return pr_lables
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def all_image_ids(images): """Given images data, return a dict of all image IDs therein. :param images: images data from Twistlock, decoded from json :return: A dict whose keys are the IDs of the images, and values are the tag for that image (if present) """ results = {} for image in im...
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def addNodeMI(nm_dict, node, value): """ Add motif information to node dictionary. Input: nm_dict: (dictionary) the dictionary of node motif degree node: (int) the id of node value: (int) the change value of node Output: nm_dict: (dictionary) changed ...
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def dict_without_keys(d, *omitkeys): """ Returns a copy of a dict without the specified keys Args: d (dict): A dict that to omit keys from *omitkeys: Variable length list of keys to omit Returns: dict: A dict with omitted keys """ return {key: d[key] for key in d.keys()...
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def get_root_nodes(config_yaml): """ List the root nodes defined in the given taxonomy config. Args: config_yaml: configuration content Returns: list of root nodes """ root_nodes = [] for root_node in config_yaml['Root_nodes']: root_nodes.append(root_node['Node']) retur...
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def hard_dedupe(s): """Takes in a string, and returns a string where only the first occurrence of each letter is retained. So the string 'abccba' goes to 'abc'. The empty string returns the empty string.""" seen = set() ans = '' for char in s: if char in seen: continue seen.a...
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import re def standardize_whitespace(string: str) -> str: """ Removes leading, trailing, and repeat whitespace from a given *string*. """ return re.sub(r"\s+", " ", string.strip())
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def get_compatibility_list_from_parser(parser): """ Extract the docstring information (if any) about compatible versions :param parser: a parser function :return: list of versions """ docstring = parser.__doc__ if docstring is None: return None lines = docstring.split('\n') ...
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def map_SWAS_var2GEOS_var(var, invert=False): """ Map variables names from SWAS to GEOS variable names """ d = { # '1_3_butadiene':, # '1_butene':, # '2_3_methylpentane':, # '224_tmp':, 'acetaldehyde': 'ALD2', 'acetone': 'ACET', # 'a...
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def is_valid_bdf_multiplier(multiplier): """check if the detect_multiplier is valid""" if multiplier < 3 or multiplier > 50: return False return True
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import re def _can_skip_tests(file_names, triggers): """ Determines if tests are skippable based on if all files do not match list of regexes :param file_names: list of changed files generated by _get_changed_files() :param triggers: list of regexes matching file name that indicates tests should be run :r...
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def format_puzzle(grid): """Formats the puzzle for printing.""" puzzle = "" for line in grid: puzzle += " ".join(line) + "\n" return puzzle
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import random def roll(add=0): """A quick function to roll a d20 and add the modifier""" return random.randint(1, 20) + add
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def yn_prompt(question: str, yes=None, no=None) -> bool: """Ask yes-no question. Args: question: Description of the prompt yes: List of strings interpreted as yes no: List of strings interpreted as no Returns: True if yes, False if no. """ if not yes: yes = ...
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def hlstr(string, color="white"): """ Return HTML highlighting text with given color. Args: string (string): The string to render color (string): HTML color for background of the string """ return f"<mark style=background-color:{color}>{string} </mark>"
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def make_valid_did(lfn_dict): """ When managing information about a LFN (such as in `rucio upload` or the RSE manager's upload), we add the `filename` attribute to record the name of the file on the local disk in addition to the remainder of the DID information. This function will take that pyt...
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def get_response(move) -> int: """ Utility function to enter the response to a move. :param move: The move to which to respond. :return: 1: hit, 2: hit and ship destroyed, 3: game over, you win, -1: miss """ print("Move made:", move) return int(input('What response to return?'))
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import gzip def load_fasttext_class_probabilities(probability_file_path): """ Utility function that loads class probabilities from a previously performed prediction run. :param probability_file_path: str, path to the output file with class probabilities for the test dataset :return: list of float: pr...
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def get_package_names(pyproject): """ Get package names :param dict pyproject: pyproject.toml body. :return: Package names :rtype: list """ package_names = [] for pkg in pyproject["package"]: if pkg["category"] == "main": package_names.append(pkg["name"]) return...
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import random def sim_detections(gt, tpr, fpr): """Simulates detection data for a set of ground truth cluster labels and an annotator with a specified TPR and FPR. Returns an array of with same length as input gt, where 1 indicates the simulated annotator detected a cluster and 0 indicates an undetec...
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def update_csv_data_dict(csv_data, first_column, *other_columns): """ Update a csv dictionary for a given first column :param csv_data: The csv data dictionary to add the row to. :param first_column: The first column of the row to add. :param *other_columns: The further columns of the row to add. ...
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import unittest def run_student_tests(print_feedback=True, show_traces=True, success_required=True): """Run a suite of student submitted tests. Tests must be located in /autograder/source/student_tests/ Args: print_feedback (bool): Print success or failure message s...
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import torch def rotated_box_to_poly(rotated_boxes: torch.Tensor): """ Transform rotated boxes to polygons Args: rotated_boxes (Tensor): (x, y, w, h, a) with shape (n, 5) Return: polys (Tensor): 4 corner points (x, y) of polygons with shape (n, 4, 2) """ cs = torch.cos(rotated_boxe...
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import torch def maybe_cuda(what, use_cuda=True, **kw): """ Moves `what` to CUDA and returns it, if `use_cuda` and it's available. Args: what (object): any object to move to eventually gpu use_cuda (bool): if we want to use gpu or cpu. Returns object: the s...
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import logging def get_logger( log_level=logging.INFO, msg_format="%(asctime)s - %(levelname)s - %(filename)s:%(funcName)s:%(lineno)s" "- %(message)s", cls_name=__name__, ): """ Instantiate a new logger. Args: log_level = One of the log reporting levels defined in the logging modu...
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def load_RIRE_ground_truth(file_name): """ Load the point sets defining the ground truth transformations for the RIRE training dataset. Args: file_name (str): RIRE ground truth file name. File format is specific to the RIRE training data, with the actual data expectd to...
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def subdivide(x_1, x_2, n): """Performs the n-th cantor subdivision of the interval (x_1, x_2), a subset [0, 1]""" if n == 0: return [] new_x_1 = 2 * (x_1 / 3) + x_2 / 3 new_x_2 = x_1 / 3 + 2 * (x_2 / 3) return ( subdivide(x_1, new_x_1, n - 1) + [new_x_1, new_x_2] + ...
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def _get_ref(info: list) -> str: """Get the workspace reference from an info tuple""" return f"{info[6]}/{info[0]}/{info[4]}"
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import re import inspect def parse_pyvars(code: str, frame_nr: int = 2): """Looks through call stack and finds values of variables. Parameters ---------- code : str SuperCollider command to be parsed frame_nr : int, optional on which frame to start, by default 2 (grandparent frame...
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def _get_lines(file_obj): """Return all the lines in file_obj.""" return [line.strip() for line in file_obj.readlines()]
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def discovery_topic_is_device_config(topic): """Return True if the discovery topic is device configuration.""" return topic.endswith("config")
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def format_class_name(name): """ Formats a string to CapWords. :param name: string to format :type name: str :return: string with the name in CapWords :rtype: str """ fixed_name = name.title().replace("_", "") return fixed_name
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import time def wait_on_job(job): """Block until the async job is done.""" while job.status() != 'done': time.sleep(.05) # pragma: no cover return job
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