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from typing import Dict def headers_msb_creator(base_header: Dict[str, str]): """ Create the right headers for MSB. Args: base_header (Dict[str, str]): the base header to use Returns: Dict[str, str]: the needed headers """ headers = base_header.copy() headers["cache-cont...
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from typing import Dict def read_map(path: str) -> Dict[str, str]: """ Given a file-like object (`String`, `File`) as a parameter, this will read each line from a file and expect the line to have the format `col1\tcol2`. In other words, the file-like object must be a two-column TSV file. WDL synt...
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def normalize(self, asOf=None, multiplier=100): """ Returns a normalized series or DataFrame Example: Series.normalize() Returns: series of DataFrame Parameters: ----------- asOf : string Date format '2015-02-29' multiplier : int Fac...
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def check_workbook_exists(service, spreadsheet_id, tab_name): """ Checks if the workbook exists within the spreadsheet. """ try: spreadsheet = service.spreadsheets().get( spreadsheetId=spreadsheet_id).execute() sheets = spreadsheet['sheets'] exists = [True for sheet i...
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def heat_flux_to_temperature(heat_flux: float, exposed_temperature: float = 293.15): """Function returns surface temperature of an emitter for a given heat flux. :param heat_flux: [W/m2] heat flux of emitter. :param exposed_temperature: [K] ambient/receiver temperature, 20 deg.C by default. :return tem...
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def remove_genomic_transcripts(dataframe): """Remove rows where value on the column 'transcript_novelty' equals to 'Genomic' Args: dataframe: pandas DataFrame Returns: pandas DataFrame """ not_genomic_transcript = dataframe["transcript_novelty"] != "Genomic" return dataframe[not_...
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import six import struct def bytes_to_int(byte_array, big_endian=True, signed=False): """ Converts a byte array to an integer. """ if six.PY3: order = 'little' if big_endian: order = 'big' return int.from_bytes(byte_array, byteorder=order, signed=signed) else: ...
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def get_ref_spec(spec='LIOx'): """ Store of reference species for families Parameters ---------- spec (str): species/tracer/variable name Returns ------- ref_spec (str) reference species for a given family Notes ----- This is for use in conbination with functions that cal...
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import keyword def force_to_valid_python_variable_name(old_name): """Valid c++ names are not always valid in python, so provide alternate naming >>> force_to_valid_python_variable_name('lambda') 'opt_lambda' >>> force_to_valid_python_variable_name('inputVolume') 'inputVolume' """ new_...
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def timedelta_float(td, units='days'): """ Returns a float of timedelta TD in UNITS (either 'days' or 'seconds'). Can be negative for things in the past. timedelta returns the number of days and the number of seconds, but you have to combine them to get a float timedelta. e.g. tim...
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def group_timing_lines(bm_iteration_lines): """ Group lines (from one benchmark iteration) by gradient call, specifying: - Update time - Gradient work time - For all partial derivatives a sublist of all lines Finally, the terminate time for the entire bm_iteration is also returned (last ...
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from typing import OrderedDict def make_sorted_dict(dic): """Turn a dict into an ordered dict by sorting the keys.""" ordered_results = OrderedDict() for key in sorted(dic.keys()): ordered_results[key] = dic[key] return ordered_results
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def new_epoch(batch_index, batch_size, num_examples): """Returns true if a new epoch occurs during batch number batch_index.""" min_batch_index = batch_index * batch_size max_batch_index = (batch_index + 1) * batch_size - 1 return ((min_batch_index % num_examples) == 0) or ((min_batch_index % num_exa...
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def lhs(var, mean): """LHS of the equation.""" return (var-mean)/mean
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def _merge_params(cli, config): """Merge CLI params with configuration file params. Note that the configuration params will overwrite the CLI params.""" # update CLI params with configuration; overwrites params = dict(list(cli.items()) + list(config.items())) return params
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import re def extract_citations(tree): """ Extract number of citations from a given eutils XML tree. Parameters ---------- tree: Element An lxml Element parsed from eutil website Return ------ n_citations: int Number of citations that an article get until parsed date....
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def Dic_by_List_of_Tuple(inlist): """ Convert a list of (key,value) tuples to {key:value} dictionary """ outdic={} for key,value in inlist: outdic[key]=value return outdic
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import binascii def hex_xor(hex_string_1, hex_string_2): """Return the XOR of two hex bytestrings.""" if len(hex_string_1) != len(hex_string_2): raise ValueError('Length of inputs must match.') hex_data_1 = binascii.a2b_hex(hex_string_1) hex_data_2 = binascii.a2b_hex(hex_string_2) return ...
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def module_resolver(jname): """Job resolver which adds a module name (called foo).""" return "foo.{0}".format(jname)
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def remove_enclosing_brackets(text): """Removes square brackets if they are enclosing the text string. Args: text (str): Any arbitrary string. Returns: str: The same string but with the enclosing brackets removed if they were there. """ if text.startswith("[") and text.endswith("]"): return(text[1:...
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def get_xvars(rvar): """ Return variables to be used in estimation """ xvars = ['OverallRank', 'treat'] if rvar == 'Tuition': xvars.append('year') return xvars
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def add_line(output, buffer, line_height): """Add a new line to the output array. :param output: The output array the line shall be appended to :param buffer: An array of space we add at the beginning of each line :param line_height: The user defined line height :returns: The output array with new...
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def get_direction_sign(here, there): """Return sign (+1 or -1) required to move from here to there.""" return 1 if here < there else -1
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def _RevisionList(rows): """Returns a list of revisions.""" return [r.revision for r in rows]
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import torch def cumprod_exclusive(tensor): """ Mimick functionality of tf.math.cumprod(..., exclusive=True), as it isn't available in PyTorch. """ cumprod = torch.cumprod(tensor, -1) cumprod = torch.roll(cumprod, 1, -1) cumprod[..., 0] = 1.0 return cumprod
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from typing import Dict from typing import Any def create_run_command(params: Dict[str, Any]) -> str: """Create the run command that will start the training/prediction. Parameters ---------- params : Dict[str, Any] The parameters for the job. It must contain "runner", which is the pat...
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import hashlib def get_md5(location): """ Get a file's MD5 checksum. Args: location: A string specifying the location of the file to check. Returns: A string containing the checksum with hexidecimal encoding. """ md5 = hashlib.md5() chunk_size = 64 * 1024 with open(location, 'rb') as source: ...
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def convert_dict_to_tuple(d): """ Converts an unhashable dict to a hashable tuple, sorted by key. """ return tuple(sorted(d.items(), key=lambda item: item[0]))
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def add_index_to_tex_prm_name(tex: str, index: int) -> str: """ Adds a lower index to a parameter's tex-name. This function is intended for vector- valued parameters. For example: ('$a$', 1) -> '$a_1$'. Parameters ---------- tex The tex-string to be modified. index The index...
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def massic_flux_shen(oil_sol, area, k): """ Return the dissolution mass flux [kg/s] source : (Shen et al., 1993) Parameters ---------- oil_sol : Oil solubility in water [kg/m³] area : Area of the slick [m²] k : Dissolution mass transfer coefficient [m/s] """ return oil_sol * a...
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import math def rotate2D(x, y, ang): """Rotates a 2d vector clockwise by an angle in radians.""" x2 = x * math.cos(ang) - y * math.sin(ang) y2 = y * math.cos(ang) + x * math.sin(ang) return x2, y2
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def single_endpoint(mocker): """Create a single network manager endpoint mock""" return mocker.stub()
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def ok_request(message: str): """Format ok response from a message.""" return { 'result': 'ok', 'message': message }, 200
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def CheckDoNotSubmitInFiles(input_api, output_api): """Checks that the user didn't add 'DO NOT ' + 'SUBMIT' to any files.""" keyword = 'DO NOT ' + 'SUBMIT' # We want to check every text files, not just source files. for f, line_num, line in input_api.RightHandSideLines(lambda x: x): if keyword in line: ...
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def split_location_string(loc): """ Return the parts of a location string (formerly used for a real estate unit location) """ return loc.capitalize().replace(", ", ",").split(",")
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def get_all_rules_for_dg(device_group, device_group_hierarchy_parent, devicegroup_objects): """ Per https://docs.paloaltonetworks.com/panorama/9-1/panorama-admin/panorama-overview/centralized-firewall-configuration-and-update-management/device-groups/device-group-policies The order is: pre-rules top-down, l...
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from functools import wraps def consumer(func): """A decorator, advances func to its first yield point when called. Modifed this original example code from PEP 342 to use the new functools.wraps decorator. This convenience function makes it look like the original function, which is almost always what...
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def merge_similarities(oldsims, newsims, clip=None): """ Merge two precomputed similarity lists, truncating the result to clip most similar items. """ if oldsims is None: result = newsims or [] elif newsims is None: result = oldsims else: result = sorted(oldsims + newsims...
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import asyncio def async_run(coro): """ runs the specified asynchronous coroutine once in an event loop :param coro: coroutine to run :return: the result of the coroutine """ return asyncio.get_event_loop().run_until_complete(coro)
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def sort_points(point_array): """Return point_array sorted by leftmost first, then by slope, ascending.""" def slope(y): """returns the slope of the 2 points.""" x = point_array[0] return (x.get_y() - y.get_y()) / \ (x.get_x() - y.get_x()) point_array.sort() # put l...
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def get_location(patent_html): """Gets location of company associated with patent entry (dict).""" # Grab metadata table ass_loc = patent_html.find(text="Assignee:").find_next() # Split tag contents so that only first assignee location is retrieved ass_text = ass_loc.text.split('\n\n')[0].replace('\...
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import re def admitted_faster_to_qed(s): """Replaces instances of "Admitted. (* faster *)" with "Qed." >>> admitted_faster_to_qed('asd Admitted. (* faster *)') 'asd Qed.' >>> admitted_faster_to_qed('asd Admitted. (* faStEr*)') 'asd Qed.' >>> admitted_faster_to_qed('asd Admitted. (* a lot...
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def is_full(board): """Checking that board is full (True) and a message about the draw or not (False), None.""" temp_str = "" for dot_list in board: for dot in dot_list: temp_str += dot if "." in temp_str: return False, None else: message = '\033[35m' + "It is a d...
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from typing import OrderedDict from typing import Counter def ReturnFrequencies(list_of_values): """Gives the frequency (%) of each value in a list args: list_of_values: list of ints. A list of integers to count returns: frequency_dict: Dict. A dictionary where key corresponds with value...
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def format_keep_alive_packages(keep_alive_packages): """Render server alive count max option.""" format_str = '-o ServerAliveCountMax={}'.format return format_str(keep_alive_packages) if keep_alive_packages else ''
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def join_tokens(tokens): """Join a list of tokens into a string Arguments: tokens (list) : a list of tokens Returns: a string with space-separated tokens """ return " ".join(tokens)
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def get_tag_count_data(infilename, chromosome='chr01'): """ Reads in tag count of a particular chromosome. Input format is the same as that of GeneTrack/LionDB3 """ k_idx = [] k_fwd = [] k_rev = [] for i in open(infilename): isplit = i.split() if isplit[0]==chromosome: ...
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def bucket_size(bucket): """ Returns the total number of bytes in a bucket. """ return sum(key.size for key in bucket.get_all_keys())
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from typing import Any import pickle def read( path: str) \ -> Any: """ Unpickle file at `path`. """ with open(path, 'rb') as file: data = pickle.load(file) return data
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def tuplize(what, lists=True, tuplize_none=False): """ If `what` is a tuple, return it as-is, otherwise put it into a tuple. If `lists` is true, also consider lists to be tuples (the default). If `tuplize_none` is true, a lone `None` results in an empty tuple, otherwise it will be returned as `None`...
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import io import re import math def mem_per_core(units='kB'): """returns memory per core in kb (default) or another desired unit""" with io.open('/proc/meminfo') as f: lines = [x for x in f.readlines() \ if re.search('MemTotal', x) is not None] mem = float(lines[0].split()[1])...
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def filter_vec_by_graph(G, vec, nodelist): """ Return a subset of vec and nodelist corresponding to the nodes defined in G """ inds = [] nodelist_sub = [] for i, node in enumerate(nodelist): if node in G: inds.append(i) nodelist_sub.append(node) vec_sub = vec[inds] return vec_sub, nodeli...
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def chunkify(lst, n): """Chunk a big list into smaller lists, each of length n """ return [lst[i::n] for i in range(n)]
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import math def entropy(class_probabilities): """given a list of class probabilities, compute the entropy""" return sum(-p * math.log(p, 2) for p in class_probabilities if p)
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def convert_maya_path_to_usd(path): """Change an absolute Maya node path into a USD SdfPath-style path. Args: path (str): Some path like "|group1|pSphere1|pSphereShape1". Returns: str: The converted USD path. e.g. "/group1/pSphere1/pSphereShape1". """ path = path.replace("|", "/")...
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import hashlib def file_hash(path): """ Return hash generated from file's contents. """ HASH_BLOCKSIZE = 1 << 20 hash = hashlib.md5() with open(path, 'rb') as f: while True: data = f.read(HASH_BLOCKSIZE) if not data: break hash.up...
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def rsa_encrypt(m: int, e: int, n: int) -> int: """ rsa_encrypt Calculates the ciphertext using the pure math model for RSA Encryption. Via the following formula. c=(m**e) % N Returns the cipher number c. :param m: the plaintext message. :param e: the encryption exponent. :param n: the modulus. :return: The ...
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import io import base64 def image_to_base64(image): """ Convert a matplotlib image to a base64 png representation Parameters ---------- image : matplotlib image object The image to be converted. Returns ------- image_base64 : string The UTF8-encoded base64 string repr...
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from pathlib import Path def _check_behaviour_toml(behaviour_toml: Path) -> Path: """ Check the behaviour toml provided exists. Parameters ---------- behaviour_toml: Path Path to behaviour toml Returns ------- Path Absolute Path to the toml file. """ if behaviou...
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def by_hex(fg, bg = "#000000", attribute = 0): """ Return string with ANSI escape code for set text colors fg: html hex code for text color bg: html hex code for background color attribute: use Attribute class variables """ # Delete # fg = fg.replace("#", "") bg = bg.replace("#", "...
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def supervised_depth_eigen2014a(outputs, labels): """ Loss for depth estimation in supervised learning This loss is described in D. Eigen and al. (2014a) Title : Depth Map Prediction from a Single Image using a Multi-Scale Deep Network Link : https://arxiv.org/abs/1406.2283 IMPLEMENTATION: ...
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def checksum(line): """Compute the TLE checksum.""" return (sum((int(c) if c.isdigit() else c == '-') for c in line[0:-1]) % 10) == int(line[-1])
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def find_index(lst, key, value): """ Given a list of dictionaries, [{key:value,},] return index of list with key and value. Parameters: lst (list): list to be searched for index key (immutable key): key to match value: value to match """ for i, dic in enumerate(lst): ...
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import re def strip_color(inp: str) -> str: """ Remove ANSI color/style sequences from a string. May not catch obscure codes used outside this module. :param inp: the string to strip :return: ``inp`` with ansi codes removed """ return re.sub('\x1b\\[(K|.*?m)', '', inp)
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def to_hsl(color: tuple) -> tuple: """Transforms a color from rgb space to hsl space. Color must be given as a 3D tuple representing a point in rgb space. Returns a 3D tuple representing a point in the hsl space. Saturation and luminance are given as floats representing percentages with a precisio...
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async def hide_pids_by_ids(db, ids): """Get a list of hided post `id`s.""" if not ids: return [] sql = """SELECT post_id FROM hive_posts_status WHERE list_type = '1' AND post_id IN :ids""" return await db.query_col(sql, ids=tuple(ids))
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from typing import List from typing import Dict from typing import Any def _create_action_list( trial_list: List[List[Dict[str, Any]]] ) -> List[List[str]]: """Create and return the MCS scene's action list using the given trial list from the JSON file data.""" action_list = [] for index in range(0...
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def strip_dashes(raw_arg: str) -> str: """Remove dashes prepended to string for arg splitting.""" while raw_arg.startswith('-'): raw_arg = raw_arg[1:] return raw_arg
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def repack(data): """ Recreate a nested object structure from a flat dictionary. Example: repack({"p.x": 1}) -> {"p": {"x": 1}} """ result = dict() for key, value in data.items(): steps = key.split(".") pointer = result while len(steps) > 1: if step...
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def is_additional_rdr_table(table_id): """ Return True if specified table is an additional table submitted by RDR. Currently includes pid_rid_mapping :param table_id: identifies the table :return: True if specified table is an additional table submitted by RDR """ return...
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def get_area_average(arr, start_row, start_col, width, height): """ Return average value of area. Sizes of area are in cell_size :param arr: array :param start_row: int :param start_col: int :param width: int :param height: int :return: float >>> get_area_average([[[100, 100, 100],...
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def is_closing_char(char, state): """Check if closing char should be processed.""" return char == '}' and state['stack'] and state['stack'][-1] == '{'
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def intersperse(lst, item): """ Adds the item between each item in the list. :param lst: :param item: :return: """ result = [item] * (len(lst) * 2 - 1) result[0::2] = lst return result
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def merge_dicts(*dicts, deleted_keys=[]): """Return a new dict from a list of dicts by repeated calls to update(). Keys in later dicts will override those in earlier ones. *deleted_keys* is a list of keys which should be deleted from the resulting dict. """ rv = {} for d in dicts: rv.up...
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def _sentence_is_in_split(sentence_index: int, split: str) -> bool: """Checks if sentence with given positional index is in the split. In order to deterministically sample train/dev/test sentences, this function assumes every 9th sentence of a treebank file belongs to the development set, and every 10th senten...
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def kernel_sigma(n_kernels): """ get sigmas for each guassian kernel. :param n_kernels: number of kernels(including the exact match) :return: sigmas, a list of sigma """ sigmas = [0.001] # exact match small variance means exact match ? if n_kernels == 1: return sigmas return sig...
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import functools def wraps(wrapped, assigned=functools.WRAPPER_ASSIGNMENTS, updated=functools.WRAPPER_UPDATES): """ A light wrapper around functools.wraps to facilitate compatibility with Python 2, Python 3, and numpy ufuncs. Primary differences from Python 2's functools.wraps: ...
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def find_one_row(substr, df, col_name): """ Return one row from `df`. The returned row has in `col_name` column a value with a sub-string as `substr. Raise KeyError if no row is found. """ for name in df[col_name]: if substr.lower() in name.lower(): return df[df[col_name] == nam...
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def get_raster_properties(dataset): """ Get the width, height, X size, and Y size of the dataset and return the values in a dictionary. *This function can be expanded to return more properties if needed* Args: dataset: a GDAL raster dataset to get the properties from Returns: da...
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def is_consistent(x, e): """ Checks for consistency (e.g. if e[n] is v, then x[n] must also be v) """ consistent = True for n in x: if n in e and x[n] != e[n]: consistent = False return consistent
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def bezier(start, end, control, steps): """Generate points in a bezier curve. x and y coordinates should be calculated respectively.""" return [(1-s)**2*start + 2*(1-s)*s*control + s**2*end for s in steps]
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def _parse_order_by(model, order_by): """ This function figures out the list of orderings for the given model and argument. Args: model (nautilus.BaseModel): The model to compute ordering against order_by (list of str): the list of fields to order_by. If the field ...
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def seq_join(seq, val): """ Flatten input sequence of lists into a single list. Insert separator value if not None. @param[in] seq sequence of lists @param[in] val separator value, will be put between sub-sequences in the resulting list if not None. @returns resulting flattened li...
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def padding(seq: list, max_length: int, pad_tok=None): """ :param seq: list to pad :param max_length: length of padded list :param pad_tok: token used to pad :return: padded list """ return (seq + [pad_tok] * max_length)[:max_length]
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def change_pair_coeff(input_lines, coefficient_list): """ Change pair coefficients of Lammps input Coefficient list format: - [[id1, id2, eps, sig], ...] """ pair_indices = [] for i, line in enumerate(input_lines): if 'pair_coeff' in line: pair_indices.append(i) p...
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import re def remove_markdown(text): """ Removes markdown formatting from the input text. :param text: the text to cleanup :return: the cleaned up text. """ # Strip URLs text = re.sub(r"\[([^]]+)\][ ]?\(([^)]+)\)", r"\g<1>", text) # Remove star-marked bold and italic # We apply ...
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def _first_occurance_binary_method(array: list, min_idx: int, match_idx: int) -> int: """Returns the lowest index of a given value in a list This function is only called once the target value has been found at match_idx. The function then uses binary search to find the first occurance of the target val...
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def build_scope(scopes: list) -> str: """Builds a valid scope string from list :param scopes: list of :class:`~twitchAPI.types.AuthScope` :rtype: str """ return ' '.join([s.value for s in scopes])
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def bytes_to_str(input_bytes): """Convert bytes to string. """ return input_bytes.decode()
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from typing import Any def to_len(value: Any) -> int: """Get the length of a value. The value is converted to string and the number of characters in the resulting string is returned. Parameters ---------- value: any Value whose length is returned. Returns ------- int """ ...
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import json import zlib def open_file(dataset_path): """ Open a JSON dataset in the dataset path Args : - dataset_path (str) : the dataset path Returns : - dict : the loaded dataset """ try : with open(dataset_path, 'r') as file: return json.load(file) except UnicodeDecodeError: ...
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import pathlib def create_missing_dir(path): """Creates specified directory if one doesn't exist :param path: Directory path :type path: str :return: Path to directory :rtype: str """ path = pathlib.Path(path) if not path.is_dir(): path.mkdir() return path
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def version_check(checked_version, min_version): """ Checks whether checked version is higher or equal to given min version :param checked_version: version being checked :param min_version: minimum allowed version :return: True when checked version is high enough """ def version_transform(v...
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def compute_window_spec_none(_, obj): """Helper method only used for row-based windows: Window spec in ibis is an inclusive window bound. A bound of 0 indicates the current row. Window spec in Pandas indicates window size. Therefore, we must add 1 to the ibis window bound to get the expected behavi...
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def occurs_count(lst,obj): """returns the number of times obj occurs in lst""" count = 0 for x in lst: if x == obj: count += 1 return count
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import random def generate_number_seeds(number_nodes): """ Parameters ---------- number_nodes : int The number of nodes in graph Returns --------- number_seeds: int The number of seeds """ upper_bound ...
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import requests def pip_package(dep): """Query PyPI package information. Sends a HTTP GET request to the PyPI remote API. Args: dep (str): A PyPI package name. Raises: A LookupError, if the connection fails or times out A ValueError, if the package name can not be found ...
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def autocomplete(corpus, prefix): """ Given a text corpus and a prefix, return a list of all words that start with that prefix """ class Trie: def __init__(self, value): self.value = value self.children = {} # allows for quick access of resulting words, ...
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import typing def find_subtour(sol: typing.Dict[typing.Tuple[int, int], float], n: int) -> typing.List[int]: """ This function takes a a solution to the TSP formulation, and returns a subtour. :param sol: a dict, each key is a two-tuple (i,j) with i < j and sol[i,j] gives the value of the variable ...
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import typing import ast def getattribute( entity_name: str, attributes: typing.List[str] ) -> typing.Union[ast.Name, ast.Attribute]: """Get object attribute. Generates following code: getattribute(entity_name, [attribute]) -> `entity_name.attribute` getattribute(entity_name, [attribute, ...
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