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def get_neighbor_distances(ntw, v0, l): """Get distances to the nearest node neighbors along connecting edges. Parameters ---------- ntw : spaghetti.Network spaghetti Network object. v0 : int Node id l : dict key is tuple (start node, end node); value is float. ...
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from typing import List from typing import Dict from typing import Any from typing import Tuple from typing import MutableMapping def _kwargs_from_call(param_names: List[str], kwdefaults: Dict[str, Any], args: Tuple[Any, ...], kwargs: Dict[str, Any]) -> MutableMapping[str, Any]: """ Insp...
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def share_of_shelf_index(products_of_brand_x, total_products): """Return share of shelf index showing the percentage of total products made up by brand X. Args: products_of_brand_x (int): Number of products of brand X in portfolio, category, or on shelf. total_products (int): Total number of pr...
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import re def validate_mysql_password(password): """Validates the given password using the default MDS MySQL password rules - Should have at least one number. - Should have at least one uppercase and one lowercase character. - Should have at least one special symbol. - Should be between 8 to 20 c...
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def igraph_centrality(g, weights='weight', cost=False, damping=0.99): """Return dict of vertex centrality measures Parameters ---------- g : igraph object may be directed or indirected, weighted or unweighted weights : str, default='weight' name of node attribute to weight edges, Se...
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def lexical_diversity(set_, list_): """ A function for computing lexical diversity """ if len(list_) < 1: return 0 return 1.0*len(set_)/len(list_)
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def _calc_nemsio_hgt(f): """Calculates the geopotential height from the variables hgtsfc and delz. Parameters ---------- f : xarray.DataSet the NEMSIO opened object. Can be lazily loaded. Returns ------- xr.DataArray Geoptential height with varialbes, coordinates and varia...
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def normalize_tourism_kind(shape, properties, fid, zoom): """ There are many tourism-related tags, including 'zoo=*' and 'attraction=*' in addition to 'tourism=*'. This function promotes things with zoo and attraction tags have those values as their main kind. See https://github.com/mapzen/vect...
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import itertools def _extract_group_summary_data(dataseries, name=None): """ Given a list of dataseries, determine the earliest start date, latest end date, and create a string of their various data types. :param list dataseries: dataseries :param name: display name for the group if desired ...
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def get_partitioner_dict(*modules): """ Given a list of modules which have a `partition` function and optionally a `name` variable, return a dictionary that maps `name` -> `partition` for any modules that have a `name`. This allows for partitioner modules to specify a standardized name by which...
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def flatten(*args): """Recursively flattens a list containing other lists or single items into a list. Examples:: >>> flatten() [] >>> flatten(2) [2] >>> flatten(2, 3, 4) [2, 3, 4] >>> flatten([2, 3, 4]) [2, 3, 4] >>> flatten([[2,...
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def extract_grid_blocks(img, blocks_per_image=(3, 3)): """ Divide image into grids(blocks) :param img: input 1-channel image :param blocks_per_image: number of grids in tuple(height, width) :return: 2D list containing pixel value for each slot """ img_height, img_width = img.shape[0], img.sh...
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import torch def to_tensor(input): """Converts the input into a ``torch.Tensor`` of the default dtype.""" if torch.is_tensor(input): return input.to(torch.Tensor()) else: return torch.tensor(input).to(torch.Tensor())
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def onlyinA(listA, listB): """ return element that's only in list A but not in B""" setA = set(listA) setB = set(listB) return list(setA.difference(setB))
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def get_any_of(getter, possible_keys, default=None): """Search for the value of any of `possible_keys` in `dictionary`, returning `default` if none are found. >>> get_any_of( {"A":1}, ["C","D","A"], "UNDEFINED") 1 >>> get_any_of( {"X":1}, ["C","D","A"], "UNDEFINED") 'UNDEFINED' """ for...
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def read_txt_as_list(filepath): """ Load txt file content into list :param filepath: filepath name :return: list of tokens """ f = open(filepath, 'r+') data = [line.rstrip('\n') for line in f.readlines()] f.close() return data
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def v_or_n(value): """Return None unless the value contains data""" return value.rstrip() if value else None
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def get_py_tree_path(behaviour): """ Accept a behaviour/composite and return a string representation of its full path """ path = "" target = behaviour while True: path = "{}>{}".format(target.name, path) target = target.parent if not target: break path = ...
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from bs4 import BeautifulSoup def html_extraction(text): """ Remove from the text html tags found on stack overflow data. :param text: string containing textual data mixed with specific html tags found on stack overflow data :return: a string in which specific html tags and it's content are remov...
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def intersection(l1, l2): """ Determines the intersection between two lines l1 and l2. l1 and l2 each represent a line with line formula ax + by = c, where a: l[0], b: l[1], c: -l[2] The intersection can be found by calculating determinants d, dx and dy :param l1: line 1 :param l2: line 2 :r...
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def months_to_seconds(months): """ Converts `months` to seconds. """ return 2.62974e6 * months
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def perform_update_group_status(dispatcher, ugs_intent): """Perform an :obj:`UpdateGroupStatus`.""" return ugs_intent.scaling_group.update_status(ugs_intent.status)
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def list_to_unicode_str(lst): """ Convert list of large integers to a unicode string. """ return "".join(map(chr, lst))
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def cbsa_to_location_id(cbsa_code: str) -> str: """Turns a CBSA code into a location_id. For information about how these identifiers are brought into the CAN code see https://github.com/covid-projections/covid-data-public/tree/main/data/census-msa """ return f"iso1:us#cbsa:{cbsa_code}"
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def replace_html(index): """Formats html. Args: index: index html content Returns: Modified index.html content """ body = """ [[clicktag_layer]] <script> var clickTag = "[[clicktag_url]]"; </script> <script data-exports-type="dclk-quick-preview">if(typeof studio !== "undefined" && studio.Enabler...
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import re def clean_text_from_general_punctuation_unicode(text): """Clears the text from general punctuation unicodes https://apps.timwhitlock.info/unicode/inspect/hex/2000-206F""" return re.sub(r"([\u2000-\u206F])", " ", text)
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def layer_type(layer): """Gets the type of a layer Args: layer (keras Layer): layer you want the type of Returns: type (str): what kind of layer it is. Eg "Dense", "Conv2D", "SimpleRNN" """ return layer.__class__.__name__
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import functools def parameterize_one(name, values): """ A decorator that paramaterizes a test case. :param name: The parameter name to parameterize. :param values: The values to supply to the parameter. """ def decorator(f): @functools.wraps(f) def run_test(self, *args, **kwa...
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def round_up( val, mult_of ): """ Rounds up the value to the given multiple """ return val if val % mult_of == 0 else val + mult_of - val % mult_of
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def unpack_unique_together(opts, only_fields=()): """ Unpack unique together fields. :param opts: Model options :type opts: `django.db.models.options.Options` :param only_fields: Fields that should be considered. :type only_fields: `collections.Iterable` :return: Flat list of fields. ""...
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import time def await_condition(condition, timeout=2000): """Return True if a condition is met in the given timeout period""" for _ in range(timeout): if condition(): return True time.sleep(0.001) return False
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def _get_spot_volume(image, spot_z, spot_y, spot_x, radius_z, radius_yx): """Get a subimage of a detected spot in 3 dimensions. Parameters ---------- image : np.ndarray Image with shape (z, y, x). spot_z : np.int64 Coordinate of the detected spot along the z axis. spot_y : np.in...
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def process_results(output): """Utility function which decodes stdout text from the water supply model Returns ======= results : dict A dictionary where keys are the results e.g. `cost` and `water` """ results = {} raw_results = output.decode('utf-8').split('\n') for result in ...
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def initialize_weights(y_data, initial_val=1): """ initialize all weights with a value. :param y_data:[xr dataset] y_dataset data. this is used to get the dimensions :param initial_val: [num] a number to initialize the weights with. should be between 0 and 1 (inclusive) :return: [xr dataset] dat...
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def commonancestors(*nodes): """ Determine common ancestors of `nodes`. >>> from anytree import Node >>> udo = Node("Udo") >>> marc = Node("Marc", parent=udo) >>> lian = Node("Lian", parent=marc) >>> dan = Node("Dan", parent=udo) >>> jet = Node("Jet", parent=dan) >>> jan = Node("Jan...
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from typing import Sequence from typing import Optional def ritem_prefix(items: Sequence[str], prefix: str) -> Optional[str]: """ Args: items (sequence of str): The items to search prefix (str): The prefix to find Returns: The rightmost element that starts with `prefix`, or `None`...
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import ast def expr2ast(expr_text): """ Parse the given text as a module, and then return the first element in the body of that module. This is shorthand for the idiom of parsing a single expression, but it doesn't check that the string is a single expression (it could be any number of va...
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def _parse_phone_number(phone_number: str) -> str: """Parse the digits from a string and format as +1xxxxxxxxxx""" phone_number = "".join(filter(str.isdigit, phone_number)) if len(phone_number) == 10: phone_number = f"1{phone_number}" return f"+{phone_number}"
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from typing import Counter def extract_predicate_token(data, pred_list=[], verbose=True): """ Builds a set that contains the relationship predicates. Filters infrequent tokens. """ token_counter = Counter() total = 0 for img in data: for relation in img['relationships']: predicate ...
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import csv def load_fsd50k_vocabulary(data_path): """Load vocabulary of FSD50K to relate FSD50K labels with AudioSet onthology Args: data_path (str): Path to the vocabulary file Returns: * fsd50k_to_audioset (dict): vocabulary to convert FSD50K to AudioSet * audioset_to_fsd50k (d...
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def number_of_radial_points(Z): """ select the number of radial grid points for the subintegral around an atom with atomic number Z """ # Hydrogen atom receives an initial quota of 20 points Nr = 20 # Each shell receives an additional 5 points if Z >= 2: Nr += 5 if Z >= 11: ...
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import random import string def random_string_of_length(length): """ Generates a random string of ASCII letters of a fixed length. Args: length (int): fixed length desired Returns: string: random string generated """ return "".join(random.choices(string.ascii_letters, k=lengt...
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import requests def fetch_repos( language: str = "", spoken_language_code: str = "", since: str = "daily", ) -> dict: """Fetch trending repositories on GitHub Parameters: language (str, optional): Filtering by language, eg: python spoken_language_code (str, optional): The spoken ...
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def _infidelity(a, b): """Infidelity between two kets.""" return 1 - abs(a.overlap(b))
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def _get_frequency_offset_alias(frequency): """Get pandas offset alias for given frequency.""" if frequency == 'hourly': return '1H' if frequency == 'daily': return '1D' if frequency == 'monthly': return '1MS' if frequency == 'yearly': return '1A' return 'QS-...
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def combineTernaryValues(statsValue, transValue): """ both values are in {0, 1, 2} and this function maps them to a unique space of {0, ..., 11} """ return statsValue + (3 * transValue + 3)
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def zeros_after(n: int) -> int: """Counts the number of trailing zeros in n Args: n (int): The number to count the zeros of Returns: int: The number of trailing zeros in n """ zeros = 0 for i in str(n)[::-1]: if i != "0": break zeros += 1 return...
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def _simple_string_value(tree, kind, name): """ base function for extracting a simple parameter value. :param tree: the parameters tree. :param kind: the xml-tag name of the parameter. :param name: the name of the parameter. :returns value: the content of the parameter 'Value' as string.""" quer...
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def format_date_url(date, fmt='%Y-%m-%d'): """ Formats a date as a string for making ABE requests. :param {datetime} date: the date to format :param {str} fmt: the format to use (defaults to YYYY-MM-dd) :return: the date in the specified string format """ return date.strftime(fmt)
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import hashlib def _hash_file(filename, blocksize=65536): """Hashes the given file. :param filename: Path to file :returns: Hex digest of the md5 checksum """ hasher = hashlib.md5() with open(filename, 'rb') as infile: buf = infile.read(blocksize) while len(buf) > 0: ...
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def _height(node): """Return height of tree rooted at node.""" return 1 + max(_height(node.left), _height(node.right)) if node else -1
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def isCongruent(a , b , m): """ Checks if a is congruent to b modulo m i.e., a ≡ b (mod m) Parameters ---------- a : int denotes a in equation a ≡ b (mod m) b : int denotes b in eqaution a ≡ b (mod m) m : int denotes m in equation a ≡ b (mod m) return : bool ...
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def make_file_safe_api_name(api_name): """Make an api name safe for use in a file name""" return "".join([c for c in api_name if c.isalpha() or c.isdigit() or c in (".", "_", "-")])
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def get_generated_cols(X_original, X_transformed, to_transform): """ Returns a list of the generated/transformed columns. Arguments: X_original: df the original (input) DataFrame. X_transformed: df the transformed (current) DataFrame. to_transform: [str] ...
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def extract_metadata_from_query_results(query_results): """ Given a Sparql query result, extract nationality, gender and birthdate :param query_results: :return: """ if query_results["results"]["bindings"]: raw_metadata = query_results["results"]["bindings"][0] gender = raw_metad...
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def anonymize_reverse_name(name): """ Anonymize reverse name before storing in the database. At most the 3 last labels are left unmasked. All the preceding labels are masked by using "[…]". """ anonymized_name = "" mask = "[…]" if name: unmasked_labels = 3 if name[-1] =...
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def block_renormalization(signal): """Renormalization step of blocking method.""" signal = [0.5 * (signal[2 * i] + signal[2 * i + 1]) for i in range(len(signal) // 2)] return signal
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def add(x, y): """ This function adds the given integer arguments :param x: integer :param y: integer :return: integer """ return x + y
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def prettify_label(label: str) -> str: """Fix parameter label to look nice for plots. Replace underscores with whitespace, TeXify some stuff, remove unnecessary things, etc. Parameters ---------- label : str Original label. Returns ------- str Prettified label. ...
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import yaml def unmarshal_yaml(yaml_file, replacements={}): """ Unmarshals yaml into a python object. `replacements` allow substituting values in the yaml file. Ex: replacements = {"NAMESPACE", "kubeflow"} metadata: - name: ... - namespace: ${NAMESPACE} ...
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import re def _convert_number_string(number_string): """ Function to convert mixed number character strings to a number. Mapping: ``{'K': 1000, 'M': 1000000}`` Parameters ---------- number_string : str Number string to be mapped Returns ------- number : int or float ...
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def create_influxdb_points_body(hostname, measurements, timestamp): """ :param str hostname: the hostname :param dict measurements: a mapping of str measurement names to float values :param timestamp: Unix timestamp in seconds :type timestamp: :class:`datetime.datetime` :return: a `list` of `dic...
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def line_number_in_contents(contents, regex, default=1): """Find the line number where regex first occurs inside contents. If regex has a matching group, the line number of the start of the matching group will be returned. If the regex is not found, 'default' is returned. """ m = regex.search(...
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def crop(image, top, left, height, width): """ This method crops the image according to parameters :param image: image to process :param top: top coordinate of the cropped image :param left: left coordinate of the cropped image :param height: height of the cropped image :param width: width ...
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def has_latex_attr(x): """ Return ``True`` if ``x`` has a ``_latex_`` attribute, except if ``x`` is a ``type``, in which case return ``False``. EXAMPLES:: sage: from sage.misc.latex import has_latex_attr sage: has_latex_attr(identity_matrix(3)) True sage: has_latex_attr...
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import logging def get_completed_assignments(project, workers): """ Get's the completed assignments :param project: (Project) The project to use :param workers: (List<String>) The list of worker usernames to get completed assignments for :return: List<Assignment> The list of completed assignments ...
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def job_tasks(conf): # type: (dict) -> list """Get all tasks for job :param dict config: configuration object :rtype: list :return: list of tasks """ return conf['tasks']
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def unmarshall_entity(entities_str): """ Deserialize entities string to RuntimeEntity list """ entities = [] for entity_str in entities_str.split(';'): splitted = entity_str.split(':') entities.append({'entity': splitted[0], 'value': splitted[0]}) return entities
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def cria_posicao(x, y): """ cria_posicao: int, int --> posicao Recebe dois inteiros positivos e devolve uma posição (x, y). """ if not (type(x) == type(y) == int and x >= 0 and y >= 0): raise ValueError('cria_posicao: argumentos invalidos') return [x, y]
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import yaml def load_yaml(data_path): """Reads a yaml file""" with open(data_path, 'r') as f: return yaml.safe_load(f)
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import typing def build_issue_doc(org:str, repo:str, title:str, text:typing.List[str]): """Build a document string out of various github features. Args: org: The organization the issue belongs in repo: The repository. title: Issue title text: List of contents of the comments on the issue Returns: ...
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def game_over(player_decks): """ Determines if either of the player decks are empty and if so, game is over. Parameters: player_decks - Decks for each player Returns: True if either deck is empty, False otherwise """ return_value = Fa...
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def pMorphIa( morphology ): """ P(D|Ia) : The probability that one would observe a SN host galaxy to have the given morphology, assuming that the SN is of type Ia Morphology may be specified as a hubble type : [ 'E', 'S0', 'Sa', 'Sb', 'Sbc', 'Sc', 'Scd', 'Irr' ] or using the CANDELS visual ...
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def ensure_is_lst(z): """If a variable is not a list, return a list with only the variable. Args: z (object): input variable Returns: z if it is a list, otherwise [z] """ if isinstance(z, list): return z else: return [z]
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def cli_table_to_recs(table_string): """Takes a table string (like that from a CLI command) and returns a list of records matching the header to values.""" lines = table_string.split('\n') # Take the first line as the header header_line = lines.pop(0).split() route_recs = [] for line ...
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def identity(x): """No-op.""" return x
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def scoring_matrix_inplace(this_c, that_c, scoring_points): """ Generate a scoring matrix such that matching has the highest value, transitions are penalised, transversions are penalised even more, and gaps are penalised the most. Reminder: A-G, C-T transitions, other combinations ase transversions. """ ...
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import locale def currency_symbol_default(**kwargs): """Returns the currency symbol for the current locale.""" return str(locale.localeconv()['currency_symbol'])
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import json def read_json(filename): """ A function read the json file and process the Neighborhoods and Coordinates Parameter: filename, a json file) Return: result, a dictionary contains key: Neighborhood, value: a list of coordinate corresponding to the that neighborhood ...
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import torch def train(model, iterator, optimizer, criterion, clip): """ TRAINING: At each iteration: get the source and target sentences from the batch, $X$ and $Y$ zero the gradients calculated from the last batch feed the source and target into the model to get the output, $\hat{Y...
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def get_eventnames(file): """Return a list of sorted temporal event names in trials.""" trials = file.intervals['trials'] event_names = [] for name in trials.colnames: t = trials[name].data[-1] try: if trials['start_time'][-1] <= t <= trials['stop_time'][-1]: ...
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import json def read_json(json_loc): """Read a given json file in as a dictionary. Args: json_loc (str): path to the json file to be read in Returns: (dictionary): A dictionary of the json that was read in """ with open(json_loc, "r") as read_file: dictionary = json.load(read_file) return dictionary
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def get_signature_bytes(path): """ Reads file from disk and returns the first 262 bytes of data representing the magic number header signature. Args: path: path string to file. Returns: First 262 bytes of the file content as bytearray type. """ with open(path, 'rb') as fp: ...
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import math def centroid_distance(image_centroid, object_centroid, row): """computes distance between an object centroid and image centroid""" X1 = image_centroid[0] Y1 = image_centroid[1] X2 = object_centroid[row][0] Y2 = object_centroid[row][1] distance = math.sqrt((X1-X2)**2+(Y1-Y2)**2) ...
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def relative_to_absolute_url(path, domain): """Convert relative path to absolute url with current site domain.""" return 'http://{domain}{path}'.format(domain=domain, path=path)
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import io def scalar_to_param(gmpl_param_name, param_value, isstringio=True): """ Convert a scalar to a GMPL representation of a parameter. :param gmpl_param_name: name for resulting GMPL param value :type gmpl_param_name: str :param param_value: :param isstringio: True (default) to return St...
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import re def github_sanitize_id(x): """ Sanitize an ID by near-GitHub standards (see toc_filter.rb in https://github.com/jch/html-pipeline): * remove punctuation besides hyphens and underscores * change spaces to hyphens * downcase Note that it doesn't: * add unique suffixes (-1, ...
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def report_config_defaults(report_config, test_harness=None): """Creates copy of report_config and sets defaults for missing entries.""" config = report_config.copy() config['report_project'] = report_config.get( 'report_project', 'google.com:tensorflow-performance') config['report_dataset'] = report_con...
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import binascii def data_encoder(data, length=None): """Encode unformatted binary `data`. If `length` is given, the result will be padded like this: ``data_encoder('\xff', 3) == '0x0000ff'``. """ s = binascii.hexlify(data).decode('ascii') if length is None: return '0x' + s else: ...
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def find_irreversible_reactions(model): """Return list of reactions that are irreversible.""" return [rxn for rxn in model.reactions if rxn.reversibility is False]
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def create_gql_request(readable_request: str) -> str: """ Function that creates a valid request to use in http_request. args: st (String): A multiline string with a request in a human readable format Returns: A string that is formatted to suit the http_request function """ format_d...
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import json def loadConfig(config_filename): """Loads a configuration file.""" with open(config_filename, 'rb') as f: return json.loads(f.read())
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import torch def stack_subsample_frames_no_sync(x, x_lens, stacking=1, subsampling=1): """ Stacks frames together across feature dim, and then subsamples input is batch_size, feature_dim, num_frames output is batch_size, feature_dim * stacking, num_frames / subsampling """ assert stacking == sub...
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import json def load_json(path, deserializer=None): """Load an object from a JSON file, optionally with a custom deserializer""" with open(path, 'r') as jf: data = json.load(jf, object_hook=deserializer) return data
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from typing import Iterable def xy_flatten(iterable: Iterable[Iterable[float]]) -> Iterable[float]: """ Flatten [(x, y)...] to [x, y, ...]. Inverse of xy_iter() Note: This will actually flatten any iterable of iterables, but the intent is just for graphical things like (1, 2) or Point(3,...
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def update_transmission_parameters(parameters, compartments_to_update): """ Update parameters with transmission rates for each compartment with altered immunity/sucseptibility to infection """ for compartment in compartments_to_update: parameters.update( { "contact_ra...
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def spit(st, tok): """ Split a the given string at the given toekn :param st: string to split :param tok: token to split at :return: split string """ return st.split(tok)
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def _map_dtypes(type_names, field_widths): """ Create dtype string based on column lengths and field type names. Parameters ---------- type_names : list List of type names from file header field_widths : list List of field width values Returns ------- dtypes : list ...
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def transform_value(value, subject_number): """Transform value with subject_number.""" return (value * subject_number) % 20201227
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import string def isprintable(data) -> bool: """ This is a convenience function to be used rather than the usual ``str.printable`` boolean value, as that built-in **DOES NOT** consider newlines to be part of the printable data set (weird!) """ if type(data) is str: data = data.encode(...
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