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from datetime import datetime def str2datetime(input_date): """Transform a string to datetime object. Args: input_date (str): String date of the format Y-m-d. It can also be 'today' which will return today's date. Returns: (`datetime.datetime`) """ if input_date == "...
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import attr def IntParameter(default, unit=None, **kwargs): """Adds an integer parameter. Args: default (int): Default value. unit (optional, str): Unit to record in metadata. Default: None. """ if unit is not None: kwargs["metadata"] = dict(unit=str(unit)) ret...
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def is_view(plugin_type): """Decorator to mark a plugin method as being a view. Views can be called via the '/plugins/' interface of kitchen and should either return None or a proper Django HTTPResponse object """ if callable(plugin_type): plugin_type.__is_view__ = True plugin_type....
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def bool_setting(value): """return `True` if the provided (lower-cased) text is one of {'1', 'ok', 'yes', 'true', 'on'}""" return str(value).lower() in {"1", "ok", "yes", "true", "on"}
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def is_int(s : str) -> bool: """ Check if string is an int. """ try: float(s) except Exception as e: return False return float(s).is_integer()
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def indices(alist,value): """ Returns the indices for a given value in a list """ ind = [item for item in range(len(alist)) if alist[item] == value] return ind
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import math def choose(n, k): """Compute the binomial coefficient. Uses // operator to force integer division. Arguments: n (int): Possibilities. k (int): Unordered outcomes. Returns: int, the binomial coefficient. """ return math.factorial(n) // (math.factorial(k) *...
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def _test_dist(id1, id2): """ Return distance between identifiers id1 and id2. The identifiers are of the form 'time=some number'. """ # extract the numbers using regex: #t1 = re.search(r"time=(.*)", id1).group(1) #t2 = re.search(r"time=(.*)", id2).group(1) t1 = id1[5:]; t2 = id2[5:] ...
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def get_nls_from_nlogo(lines): """Gets NetLogo source from an .nlogo file. The nlogo file format contains a lot of different things, and thus we need to extract the actual NetLogo code from it. Parameters ---------- lines : list of str The contents of a file as a list of strings Returns ------- li...
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def serialize_record_to_dict(record): """Serialize an article record into a dictionary. Args: record: The article as an ArticleRecord to be serialized. Returns: Dictionary serialization of the input record. """ return { 'title': record.get_title(), 'link': record.get...
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def _invert_targets_pairs(targets_pairs, label_encoder): """ Given a list of targets pairs of the form 'target1+target2', revert back to the original labeling by using `label_encoder.inverse_transform` Parameters ---------- targets_pairs : list or array-like of str label_encoder : fitted La...
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import json def build_categories(obj): """Returns a list of categories for object.""" return json.loads(obj.categories) if obj.categories else []
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def increment_period(value, periods, frequency): """Incrementa una fecha en X períodos, según su frecuencia.""" actions = { "A": lambda: value.replace(years=+periods), "6M": lambda: value.replace(months=+(6 * periods)), "Q": lambda: value.replace(months=+(3 * periods)), "M": lam...
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from typing import List from typing import Dict def select_most_frequent_shingles(matches: List[str], db: Dict[str, int], min_count_split: int, threshold: float): """Select the most frequent shingles that matches...
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def min_max_voltage(voltage): """ outputs the minimum and maximum voltage recorded :param voltage: (list) array of voltages :return: tuple of the minimum and maximum voltages """ min_voltage = min(voltage) max_voltage = max(voltage) min_max_voltages = (min_voltage, max_voltage) retu...
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def polynomial1D(x, m, b): """Return the value of a line with slope m and offset b x: the independent variable m: the slope of the line b: the offset of the line """ return (m * x) + b
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def update_mol(mol): """ Update atom types, multiplicity, and atom charges in the molecule. Args: mol (Molecule): The molecule to update. Returns: Molecule: the updated molecule. """ for atom in mol.atoms: atom.update_charge() mol.update_atomtypes(log_species=False,...
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def sort_reference_list(reference_list): """Given a reference_list, sort it by number""" used_reference_list = [] # Remove unused references from list for reference in reference_list: if reference.get('number'): used_reference_list.append(reference) return sorted(used_r...
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def get_value(dct: dict, *keys): """access dict with given keys""" for key in keys: dct = dct.get(key, {}) return dct
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def countSuccess(L, diff, hero) : """ Counts the number of success for the roll. Parameters ---------- L: int list Decreasing sorted list with values between 1 and 10. diff : int Difficulty of the roll. A dice is counted as a success if the value of the dice is greater or equal...
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from pathlib import Path def get_number_of_files_in_dir(directory): """ Sums the number of files in a directory :param directory: Any directory with files :return: Number of files in directory """ directory = Path(directory) files = directory.iterdir() total_files = sum(1 for x in file...
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from typing import Optional from typing import Tuple def data_row_name_append(data_rows: Optional[Tuple[Optional[int], Optional[int]]]) -> str: """String to name of data for selected rows only""" if data_rows is not None and not all(v is None for v in data_rows): return f':Rows[{data_rows[0]}:{data_ro...
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def endpointId_to_entityId(endpointId: str) -> str: """Use for converting Alexa endpoint to HA entity id.""" return endpointId.replace("_", ".", 1)
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def first_int(*args, default=1): """Parse the first integer from an iterable of string arguments.""" for arg in args: try: return int(arg) except ValueError: continue return default
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def get_node_ips_from_config(boot_config): """ Returns the IPs of the configured nodes :param boot_config: the snaps-boot config to parse :return: a list if IPs for the given nodes """ out_hosts = list() if ('PROVISION' in boot_config and 'DHCP' in boot_config['PROVISION'] ...
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def host_and_page(url): """ Splits a `url` into the hostname and the rest of the url. """ url = url.split('//')[1] parts = url.split('/') host = parts[0] page = "/".join(parts[1:]) return host, '/' + page
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from typing import Any import enum import dataclasses def unparse(data: Any) -> Any: """ Coerces `data` into a JSON-like or YAML-like object. Informally, this function acts as the inverse of `parse`. The order of fields in data classes will be preserved if the implementation of `dict` preserves t...
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def evaluate_final(restore, classifier, eval_sets, batch_size): """ Function to get percentage accuracy of the model, evaluated on a set of chosen datasets. restore: a function to restore a stored checkpoint classifier: the model's classfier, it should return genres, logit values, and cost for a gi...
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import socket def set_socket_io_timeouts(transport, seconds, useconds=0): """ Set timeout for transport sockets. Useful with highly concurrent workloads. Returns False if it failed to set the timeouts. """ seconds = (seconds).to_bytes(8, 'little') useconds = (useconds).to_byte...
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def get_dtypes(df): """ Returns all dtypes of variables in dataframe Parameters ---------- df: Pandas dataframe or series Returns ------- Dataframe with all dtypes per column """ return df.dtypes
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from typing import Dict import json def get_msd_score_matches(match_scores_path: str) -> Dict: """ Returns the dictionary of scores from the match scores file. :param match_scores_path: the match scores path :return: the dictionary of scores """ with open(match_scores_path) as f: return json.load(f)
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def complex_vct_str ( vct , format = '%.5g%-+.5gj' ) : """Convert vector of complex types to string""" try : lst = [] for c in vct : cc = complex ( c ) item = format % ( cc.real , cc.imag ) lst.append ( cc ) return '[ ' + ', '.join ( lst ) +...
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from typing import Union from pathlib import Path from typing import Dict from typing import Any import json def load_data_from_json(path: Union[Path, str]) -> Dict[str, Any]: """Load ASCII frames from JSON :param path: JSON file path :return: ASCII frames """ with open(path, 'r') as file: ...
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def make_word_schedule(block): """ This function takes the initial 512 bit block and divides it up into 16 x 32 bit words. It then appends a further 48 x 16 bit words (all set to zero) to bring the word schedule up to 64 words each of 32 bits. :param block: :return: """ words = [] f...
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def links_to_sets(links): """ :param links: Dict of [doc_id, set of connected doc ids] :return clusters: Frozen set of frozen sets, each frozen set contains doc ids in that cluster """ removed = set() clusters = [] for (pivot, linkage) in links.iteritems(): if pivot not in removed: ...
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def untar_cmd(src, dest): """ Create the tar commandline call Args: src (str): relative or full path to source tar file dest (str): full path to output directory Returns: str: the tar command ready for execution Examples: >>> untar_cmd('my.tar.gz', '/path/to/place') ...
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def excstr(e): """Return a string for the exception. The string will be in the format that Python normally outputs in interactive shells and such: <ExceptionName>: <message> AttributeError: 'object' object has no attribute 'bar' Neither str(e) nor repr(e) do that. """ if e is No...
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def get_name_no_py(context): """return the component name without .py extension (if existing) Args: context (dict): complete package and component transformation Returns: str: component name without possible .py extension. Examples: >>> get_name_no_py({'componentName':"nopy"})...
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import pickle def load_file(filepath): """ Loads a pickle file. :param filepath: the path of the file to load. """ with open(filepath, 'rb') as handle: data = pickle.load(handle) return data
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def normRange(imgarray): """ normalize the range of an image between 0 and 1 """ min1=imgarray.min() max1=imgarray.max() if min1 == max1: return imgarray - min1 return (imgarray - min1)/(max1 - min1)
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def check_and_remove_trailing_occurrence(txt_in, occurrence): """Check if a string ends with a given substring. Remove it if so. :param txt_in: Input string :param occurrence: Substring to search for :return: Tuple of modified string and bool indicating if occurrence was found """ n_occurrence...
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def TENSOR_1D_FILTER(arg_value): """Only keeps 1-D tensors.""" return arg_value.is_tensor and len(arg_value.shape) == 1
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def is_bitfield_as_enum_array(parameter: dict) -> bool: """Whether the parameter is a bitfield represented as an enum array.""" return "bitfield_as_enum_array" in parameter
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def typename(value): """Return the name of value's type without any module name.""" return type(value).__name__
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import shlex def CommandListToCommandString(cmd): """Converts shell command represented as list of strings to a single string. Each element of the list is wrapped in double quotes. Args: cmd: list of strings, shell command. Returns: string, shell command. """ return ' '.join([shlex.quote(segmen...
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def make_friends_list(json_data: dict) -> list: """ Returns a list of tuples: [(screen_name, location), ...] from json data (.json object) >>> make_friends_list({\ "users": [\ {\ "id": 22119703,\ "id_str": "22119703",\ "name": "Niki Jennings",\ ...
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def get_interval(value, num_list): """ Helper to find the interval within which the value lies """ if value < num_list[0]: return (num_list[0], num_list[0]) if value > num_list[-1]: return (num_list[-1], num_list[-1]) if value == num_list[0]: return (num_list[0], num_list...
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def count_morphs(settings): """ Count the number of morph sequences, given the number of key frames and loop switch setting. """ return len(settings['keyframes']) - 1 + settings['render']['loop']
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def cross_v2(vec1, vec2): """Return the crossproduct of the two vectors as a Vec2. Cross product doesn't really make sense in 2D, but return the Z component of the 3d result. """ return vec1.y * vec2.x - vec1.x * vec2.y
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import uuid def create_random_string(prefix="", l=10): """ Creates and returns a random string consisting of *l* characters using a uuid4 hash. When *prefix* is given, the string will have the format ``<prefix>_<random_string>``. """ s = "" while len(s) < l: s += uuid.uuid4().hex s...
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import re import logging def get_device(device: str): """Get device (cuda and device order) from device name string. Args: device: Device name string. Returns: Tuple[bool, Optional[int]]: A tuple containing flag for CUDA device and CUDA device order. If the CUDA device flag i...
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from pathlib import Path def credentials_file() -> Path: """ Get path to credentials file. :return: the path """ Path.home().joinpath('.jina').mkdir(parents=True, exist_ok=True) return Path.home().joinpath('.jina').joinpath('access.yml')
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def merge_sublists(list_of_lists): """ merge list of sub_lists into single list """ return [ item for sub_list in list_of_lists for item in sub_list]
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import logging def get_logger(name): """ Returns a logger with unified format and level set """ logging.basicConfig(format='[%(asctime)-15s][%(levelname)-7s] %(message)s', level=logging.INFO) logger = logging.getLogger(name) return logger
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def plasma_freq(n_e): """ Given an electron density parameter (n_e), compute the plasma frequency. """ eps0 = 8.8542E-12 #[A*s/(V*m)] Permittivity e = 1.602E-19 #[C] Elementary charge me = 9.109E-31 #[kg] Electron rest mass omega_p...
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def get_sg_id(connector, instance): """ Get one security groups applied to the given instance. :param connector: Active EC2Connection :param instance: EC2Object Instance :return: EC2Object SecurityGroup """ for sg in connector.get_all_security_groups(): for inst in sg.instances(): ...
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def check_if_excluded(path): """ Check if path is one we know we dont care about. """ exclusions= [ "src/CMake", "src/_CPack_Packages", "src/bin", "src/archives", "src/config-site", "src/cqscore", ...
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def get_rule_tags(rule): """Get the tags from a rule""" if "properties" not in rule: return [] return rule["properties"].get("tags", [])
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def number_to_choice(number): """Convert number to choice.""" # If number is 0, give me 'rock' # If number is 1, give me 'paper' # If number is 2, give me 'scissors' random_dict = {0: 'rock', 1: 'paper', 2: 'scissors'} return random_dict[number]
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def split1d(Astart,Aend,Bstart,Bend): """For a 1-d pair of lines A and B: given start and end locations, produce new set of points for A, split by B. For example: split1d(1,9,3,5) splits the line from 1 to 9 into 3 pieces, 1 to 3 3 to 5 and 5 to 9 it returns these three ...
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def flattenDoc(docString): """ Take an indented doc string, and remove its newlines and their surrounding whitespace """ clean = '' lines = docString.split('\n') for line in lines: clean += line.strip() + ' ' return clean
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from typing import Sequence from typing import Any from typing import List def _space_list(list_: Sequence[Any]) -> List[str]: """ Inserts whitespace between adjacent non-whitespace tokens. """ spaced_statement: List[str] = [] for i in reversed(range(len(list_))): spaced_statement.insert(0, list_[...
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import math def ligand_rmsd(pose1, pose2): """Calculate RMSD of two ligands Args: pose1 (pose): Pose 1 pose2 (pose): Pose 2 Returns: float: RMSD score """ # define ligand residue id of pose 1 ref_res_num = 0 for j in range(1, pose1.size() + 1): if not pose...
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import time def profile(f, *args, **kwargs): """ Execute f and return the result along with the time in seconds. """ now = time.perf_counter() # execute and determine how long it took return f(*args, **kwargs), time.perf_counter() - now
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def BFS(graph, s, t, parent): """ Populates parent with nodes to visit and returns true if there are nodes left to visit Args: graph: an array of arrays of integers where graph[a][b] = c is the max flow, c, between a and b. s: Source of the graph t: Sink or "end" of the graph ...
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import re def remove_quotes(path_string): # type: (str) -> str """ Removes Quotes from a Path (e.g. Space-Protection) :type path_string: str :param path_string: :rtype: str :return: unquoted path """ return re.sub('\"', '', path_string)
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import re def make_title_site_similarity_function(site): """Curry the title_site_similarity function to only require a title.""" def remove_non_alphanumerics(word): """Returns the `word` with nonalphanumerics (and underscores).""" return re.sub(r'[^\w]', '', word) def title_site_similarit...
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def merge(left, right): """Merge two lists in ascending order.""" lst = [] while left and right: if left[0] < right[0]: lst.append(left.pop(0)) else: lst.append(right.pop(0)) if left: lst.extend(left) if right: lst.extend(right) return lst
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def generator_single_int_tuple(random, args): """ Function to generate a new individual using the integer tuple representation. The function returns a set of tuples values with a maximum of *candidate_max_size* elements. Args: random: the random number generator object args (dict): keyw...
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def continued_fraction_recursive(N, D, k, i): """ Recursively computes the i-th term of a generalized finite continued fraction. Use the wrapper function continued_fraction(N, D, k) instead of this one. @type N: function(int) @param N: a function that returns the numerator in the i-th term ...
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def compose_line(title, file_stem): """ Composes the line to be written to the index in md format """ index_line = f'* [{title}]({file_stem}.html)' + '\n' return index_line
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def is_multiply_of(value, multiply): """Check if value is multiply of multiply.""" return value % multiply == 0
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import re def alphanum_key(s): """Order files in a 'human' expected fashion.""" key = re.split(r'(\d+)', s) key[1::2] = list(map(int, key[1::2])) return key
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def get_scope(request): """ Utility method to return the scope of a pytest request :param request: :return: """ if request.node is request.session: return 'session' elif hasattr(request.node, 'function'): return 'function' else: return 'module'
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def get_box_status(boxes, status="running"): """ Take a list of instances and return those that match the 'status' value :param boxes: The list of boxes (instances) to search through :param status: The status you are searching for :return: A list of instances that match the status value passed ...
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def soft_thresholding_operator(z, l): """ Soft-thresholding operator. """ if z > l: val = z - l elif z < -l: val = z + l else: val = 0 return val
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def extract_wiki_link(entry, lang): """ Extract the associated wikipedia link to an entry in a specific language :param entry: entry data :param lang: lang of wikipedia link, you want to extract :return: """ if "sitelinks" in entry: siteLinks = entry['sitelinks'] key = '{0}w...
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def get_num_from_bond(bond_symbol: str) -> int: """Retrieves the bond multiplicity from a SMILES symbol representing a bond. If ``bond_symbol`` is not known, 1 is returned by default. :param bond_symbol: a SMILES symbol representing a bond. :return: the bond multiplicity of ``bond_symbol``, or 1 if ...
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import json def load_params(param_file): """loads a json parameter file.""" with open(param_file) as json_file: return json.load(json_file)
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from datetime import datetime def to_isoformat(item: str) -> str: """Compute the ISO formatted representation of a timestamp. Args: item: The timestamp to be formatted. Returns: The ISO formatted representation of the timestamp. """ if item is not None: return datetim...
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from datetime import datetime def get_timestamp(timestamp_format="%Y%m%d_%H%M%S"): """Return timestamp with the given format.""" return datetime.now().strftime(timestamp_format)
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from textwrap import dedent def chomptxt(s: str) -> str: """ dedents a triple-quoted indented string, and replaces all single newlines with spaces. replaces all double newlines (\\n\\n) with single newlines Converts this: txt(''' hello world here's another ...
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import tempfile def serialize(figure: tempfile._TemporaryFileWrapper) -> bytes: """ Serialize a figure that has been rendered Parameters ---------- figure figure """ with open(figure.name, "rb") as f: return f.read()
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import string import random def idGenerator(size=16, chars=string.digits + string.ascii_letters + string.digits): """ Generate random string of size "size" (defaults to 16) """ return ''.join(random.choice(chars) for _ in range(size))
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from functools import reduce def get_gpu_distribution(runs, available): """ Finds how to distribute the available runs to perform the given number of runs. Parameters ---------- runs : int number of reconstruction requested available : list list of available runs ...
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def _read_lock_file(lockfile): """ Read the pid from a the lock file. """ lock = open(lockfile, 'r') pid = lock.read() lock.close() return pid
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import math def get_distance(x1: int, y1: int, x2: int, y2: int) -> float: """ it returns the distance between two points :param x1: int :param y1: int :param x2: int :param y2: int :return: float """ return math.sqrt(((x1 - x2) ** 2 + (y1 - y2) ** 2))
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def to_base_2(x): """x is a positive integer. Returns a list that is x in base 2. For instance, 22 becomes [1, 0, 1, 1, 0] and 0 becomes []""" x = int(x) result = [] while x > 0: if x % 2: result.append(1) else: result.append(0) x = x // 2 result.r...
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def problem_errors(assignment) -> dict: """ Takes an assignment object and returns a dictionary of each of the problems in the assignment and the number of errors all students made on that problem. """ problems = {} problem_number = 1 for problem in assignment.problems.all(...
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import math def convert_degs_to_rads(deg): """convert degrees into radians""" return deg * (math.pi / 180.0)
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def get_track_terms(track_fn): """Returns list of track terms in the file""" with open(track_fn, 'rb') as fin: terms = fin.readlines() terms = [term.strip().lower() for term in terms] terms = list(set(terms)) return terms
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def uniq(lst): """ Take a sorted list and return a list with duplicates removed. Also return the length of the contracted list: >>> uniq([1,3,7,7,8,9,9,9,10]) ([1, 3, 7, 8, 9, 10], 6) >>> uniq([1,1,1,1,1,1,1,1]) ([1], 1) >>> uniq([1,1,1,2,2,3,3,3]) ([1, 2, 3], 3) >>> uniq([1,3,7...
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import math def getRotationMatrix(eulerAngles): """ From OpenCMISS-Zinc graphics_library.cpp, transposed. :param eulerAngles: 3-component field of angles in radians, components: 1 = azimuth (about z) 2 = elevation (about rotated y) 3 = roll (about rotated x) :return: 9-component rotation m...
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def get_top_row(listing): """ returns the top row of given listing's info """ top_row = listing.find('div', {'class':'_1tanv1h'}).text # _167gordg top_row = top_row.split(' in ') # what are we looking at? what_it_is = top_row[0] # where is it? where_it_is = top_row[1] return wha...
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def input_list(size: int) -> list[int]: """ input_list: Creates a list and aks user to fill it up. Args: size (int): Size of the list Returns: list: The list which has been created by the user. """ # creating an empty list store: list[int] = [] # iterating till the...
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def gimmeTHATcolumn(array,k): """Extracts the k-column of an 2D-array, returns list with those column-elements""" helparray = [] for i in range(len(array)): helparray.append(array[i][k]) return helparray
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import struct def decode(arg_fmt, arg_fileHandler): """ Using the struct module, read/decode a segment of binary data into a type indicated by the input format """ sfmt = struct.calcsize(arg_fmt) return struct.unpack(arg_fmt, arg_fileHandler.readline(sfmt))
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from pathlib import Path def get_json_schema_path() -> str: """Return the path to the JSON schema.""" return str(Path(__file__).resolve().parent / "music.schema.json")
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def set_time_resolution(datetime_obj, resolution): """Set the resolution of a python datetime object. Args: datetime_obj: A python datetime object. resolution: A string indicating the required resolution. Returns: A datetime object truncated to *resolution*. Examples: .. ...
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def comma_separated_positions(text): """ Start and end positions of comma separated text items. Commas and trailing spaces should not be included. >>> comma_separated_positions("ABC, 2,3") [(0, 3), (5, 6), (7, 8)] """ chunks = [] start = 0 end = 0 for item in text.split(","): ...
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