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import random def sample_table(table, k=None): """ select a sample of size k from rows of a pyarrow Table. """ if k is None: return table return table.take(random.sample(range(len(table)), k=k))
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def safe_sub(val1, val2): """ Safely subtracts two values. If either value is -1, then the result is -1 (unknown). """ return -1 if val1 == -1 or val2 == -1 else val1 - val2
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import time, os, random def get_random_temp_dir_name(basedir="/tmp"): """ Creates a directory path with a unique random name as a subdirectory of the given directory. The directory name is derived from - the current time - the process id and - some random numbers """ return "%s/%s-...
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def thresh_label(label_list,threshold): """ Encode label as 0 or 1 depending on the given threshold """ return [0 if label < threshold else 1 for label in label_list]
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import torch def cho_solve_AXB(a, L, b): """Compute tensor $a C^{-1} b$ from cholesky factor. Args: a (torch.Tensor): M x N tensor. L (torch.Tensor): N x N lower triangular tensor where $L L^T = C$. b (torch.Tensor): N x L tensor. Returns: torch.Tensor: $a C^{-1} b$ "...
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def scrub_uuid(string): """Scrub any existing `"_uuid"` suffix from `string`.""" idx = string.rfind("_") if idx != -1: maybe_uuid = string[(idx + 1):] if len(maybe_uuid) == 32: try: _ = int(maybe_uuid, base=16) except ValueError: pass ...
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def date_to_xmlschema(date): """Format a date for use in XML. date - The Time to format. Examples date_to_xmlschema(datetime.datetime.now()) => "2011-04-24T20:34:46+05:30" Returns the formatted String. """ return date.strftime('%Y-%m-%dT00:00:00+5:30')
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def _zero_triband(a, lower=0): """ Explicitly zero out unused elements of a real symmetric banded matrix. INPUTS: a -- a real symmetric banded matrix (either upper or lower hald) lower -- if True, a is assumed to be the lower half """ nrow, ncol = a.shape if lower: f...
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import re def sterilize(text): """Sterilize input `text`. Remove proceeding and preeceding spaces, and replace spans of multiple spaces with a single space. Args: text (str): text to sterilize. Returns: sterilized message `text`. """ return re.sub(r'\s+', r' ', text.strip())
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import math def PowellSum(x, lb=-1., ub=1.): """ Description: ----------- Dimensions: d Input Domain: ------------ xi ∈ [-1, 1], i = 1, ..., d Global Minimum: -------------- f(x) = 0, x = (0, ..., 0) """ y = 0. for i in range(len(x)): y = y + math.fabs(x[i...
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def cross_product(vec1, vec2): """ Do cross product with two vector. @param { Vector2 } vec1 : first vector. @param { Vector2 } vec2 : second vector. @return { float } : Return the scalar. """ return vec1.get_x() * vec2.get_y() - vec1.get_y() * vec2.get_x()
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def template_directory(test_config_directory): """Return path to directory containing several templates""" return test_config_directory / 'templates'
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def get_port(device): """ Get the port, as string, of a device """ return str(device.port)
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from datetime import datetime def print_time(t): """ prints time t in "11:23 AM" format :type t: float time in minutes :rtype : str time in specified format """ dt = datetime(2014, 8, 1, int(t/60), int(t%60), 0) return dt.strftime("%I:%M %p")
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def wait_for_event(bidi_session, event_loop): """Wait until the BiDi session emits an event and resolve the event data.""" def wait_for_event(event_name: str): future = event_loop.create_future() async def on_event(method, data): remove_listener() future.set_result(data...
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def build_dict(seq, key): """ Turn an unnamed list of dicts into a nammed list of dicts Taken from stackoverflow https://stackoverflow.com/questions/4391697/find-the-index-of-a-dict-within-a-list-by-matching-the-dicts-value """ return dict((d[key], dict(d, index=index)) for (index, d) in enumera...
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def file_read_file_location_mod(mod_file, mod_dict={}): """ read the file that lists by file location modification lookups note: file location is the file dirname w/o leading common drive folders file format: new_label\tfile location previously known to be saved to: os.path...
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from typing import OrderedDict def filter_words(word_to_idx, vectors, vocabulary): """Filter word vector data to vocabulary.""" filtered_to_idx, filtered_indices = OrderedDict(), [] for word, idx in word_to_idx.items(): if word in vocabulary: filtered_to_idx[word] = len(filtered_to_idx...
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def get_controller(self, name): """ Retrieves a controller instance (inside the current system) with the provided name. The strategy for the retrieval of the controller is based upon the current conventions. :type name: String :param name: The name of the controller that should be retrieve...
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import re def collapse_slashes(path): """Replaces repeated path separators ('/') with a single one.""" return re.sub('//+', '/', path)
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def get_column_names( data, column_t_index, column_r_index, ): """Function that gets column indexes of T and R data in dataframe. Args: data (list): list of DataFrames of raw data column_t_index (str): index of column containing temperature data column_r_index (str): index o...
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def update_price(price_input): """ Return price as integer by removing: - "€" symbol - "," to convert the number into float first (e.g. from "€100,000.00" to "100000.00") """ price_input = price_input.replace("€", "") price_input = float(price_input.replace(",", "")) return int(price_inp...
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from dateutil import tz def utc_to_local(dt): """Convert naive datetime to local time zone, assuming UTC.""" return dt.replace(tzinfo=tz.tzutc()).astimezone(tz.tzlocal())
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from typing import List from typing import Tuple from typing import Set def is_unit_demand(bids: List[Tuple[Set[int], float]]): """ Given bids, returns true if bidder is unit-demand (one item per bid). """ return all(len(items) <= 1 for items, bid in bids)
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def bash_string(s): """Wrap a string in double quotes and escape things inside.""" s = s.replace('\\', '\\\\') # \ -> \\ s = s.replace('\"', '\\\"') # " -> \" return '\"{}\"'.format(s)
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import itertools def powerset(iterable): """ Computes the powerset of an iterable. See https://docs.python.org/2/library/itertools.html. """ as_list = list(iterable) return itertools.chain.from_iterable( itertools.combinations(as_list, r) for r in range(len(as_list) + 1) )
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def is_number(string): """ check whether a string can be converted to a number Args: string: value as a string, could be a number Returns: True/False for whether the value can be converted to a number """ try: number = float(string) except ValueError: ...
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def pka(reactants, conditions): """Compute the pka of every molecule in the reactants. The pka, as well as the id of the "pka_point" is stored in the molecule. The "pka_point" is the id of the Hydrogen most likely to be donated, or the id of the atom most likely to accept a Hydrogen. The pka is ba...
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def calc_num_overlap_samples(samples_per_frame, percent_overlap): """Calculate the number of samples that constitute the overlap of frames Parameters ---------- samples_per_frame : int the number of samples in each window / frame percent_overlap : int, float either an integer ...
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def asdict(**items): """Shorthand to create a dictionary using a `key=value` syntax instead of the standard `'key':value`.""" return items
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from datetime import datetime from dateutil import tz def _localized_time(dt): """Convert a datetime object to local time""" if isinstance(dt, datetime): return dt.astimezone(tz.tzlocal()) else: return dt
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def select_targets_by_prefix(cells, prefix): """given all cells and a parameter name that may have a prefix, select the cells it refers to: if the param name starts with 'e_' or 'i_' it will be a subpopulation, otherwise return all """ for subpopulation in ['e', 'i']: if prefix.startswith(subpop...
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from typing import Optional def get_probability(row: dict) -> Optional[int]: """ Estimate confidence percentage based on the `ambiguity_score`. Per pangolin docs, this is basically the number of lineage-defining sites that had to be imputed from the reference sequence. Round and multiply by 100 --...
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def missing_balance(unbalanced_items, actual_split): """ Get the required portions to complete balanced meals Args: unbalanced_items (dict): dictionary item_categ --> list of balanced portions actual_split (dict): dictionary item_categ --> ideal individual meal split Returns: re...
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def get_health_status(item): """ extract health status for document :param item: source of information :return: list with health statuses """ health_status = list() if 'health status' in item['characteristics']: key = 'health status' elif 'health status at collection' in item['ch...
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import re def remove_job_status_rows(df): """ Removes all of the rows representing calls to the jobs status endpoint. For async requests we have a row for each request that pings the job status route. This row is not useful for capturing performance information and when there are many async reque...
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from math import pi def find_volume(r): """Returns the volume of a sphere with a given radius """ return (4/3)*pi*(r**3)
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import socket def reverse_dns(address: str) -> str: """Attempt to resolve an IP address to its DNS name. :param address: The IP address to resolve :return: The IP's DNS name as a string """ try: result = socket.gethostbyaddr(address)[0] except socket.herror: result = address ...
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def count_max_tags(arrival_interval: float, time_in_area: float) -> int: """ Get maximum number of tags in area. Parameters ---------- arrival_interval : float time_in_area : float Returns ------- n : int """ return int(time_in_area // arrival_interval) + 1
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def create_example(previous_lines, line, file_id): """Creates examples with multi-line context The examples will include: file_id: the name of the file where these lines were obtained. response: the current line text context: the previous line text context/0: 2 lines before ...
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def _update_with_csrf_disabled(d=None): """Update the input dict with CSRF disabled.""" if d is None: d = {} d.setdefault('meta', {}) d['meta'].update({'csrf': False}) return d
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def transform(pts, trans): """ Applies the SE3 transformations, support torch.Tensor and np.ndarry. Equation: trans_pts = R @ pts + t Input - pts: [num_pts, 3] or [bs, num_pts, 3], pts to be transformed - trans: [4, 4] or [bs, 4, 4], SE3 transformation matrix Output - pts: [num_...
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def decimal_to_binary(decimal): """Convert an integer into a binary string. E.g. 5 -> '101'.""" return format(decimal, 'b')
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import copy def rename(object, complex): """ Takes a PDB object and a complex. Returns a copy of the PDB object so that no chain in the object has the same id as a chain in the complex. Renaming is done checking non-used chain names in the complex, starting form ASCII character A. """ # ASCII...
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def lookup_with_backup(mapping: dict, key: object, backup_key: object) -> object: """Return the corresponding value of key in mapping. If key is not in mapping, then return the corresponding value of of backup_key in mapping instead. This assumes that at least one of key and backup_key are a key in ma...
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def get_f_H_i_1(region, glass_spec_category): """天窓等の屋根又は屋根の直下の天井に設置されている開口部の暖房期の取得日射熱補正係数 Args: region(int): 省エネルギー地域区分 glass_spec_category(str): ガラスの仕様の区分 Returns: float: 天窓等の屋根又は屋根の直下の天井に設置されている開口部の暖房期の取得日射熱補正係数 """ # 表1(a) 天窓等の屋根又は屋根の直下の天井に設置されている開口部の暖房期の取得日射熱補正係数 table_...
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def binary_search(array, key) -> int: """ Binary search algorithm. :param array: the sorted array to be searched. :param key: the key value to be searched. :return: index of key value if found, otherwise -1. >>> array = list(range(10)) >>> for index, item in enumerate(array): ... as...
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def at(line): """count a and t in dna sequence""" count = 0 for letter in line: if (letter == "A") or (letter == "T"): count += 1 return count
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def renumber_filename(filename, i, zfill_len): """ Discard the numbered part of the filename and renumber according to its new position in the list of replacement rows to be inserted (passed as `i`). E.g. from ".../segmented/output_035_6.wav" to ".../segmented/output_035_012.wav" when `i` = 12 and `...
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def format_time(row): """Format the date and time into ISO 8601 format YYYY-MM-DDThh:mm:ss+00:00""" # ISO 8601 format YYYY-MM-DDThh:mm:ss+00:00 return row['date_time'].strftime('%Y-%m-%dT%H:%M:%S+00:00')
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def cria_posicao(col, ln): # str x str -> posicao """ Recebe duas cadeias de carateres correspondentes a coluna c e a linha l de uma posicao e devolve a posicao correspondente, se ambos os argumentos forem validos. :param col: Coluna, pode ser 'a', 'b' ou 'c' :param ln: Linha, pode ser '1', '2'...
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import torch def add_alpha(img): """ Adds a totally opaque alpha channel to a tensor, whose last axis corresponds to RGB color. Parameters ---------- img : torch.Tensor The RGB image. Returns ------- torch.Tensor The resulting RGBA image. """ alpha_shape = li...
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import re def ipv6(value: str): """ Validator IPv6 address Example Result: [2001:0db8:0000:0000:0000:8a2e:0370:7334, 2001:db8::8a2e:370:7334] Detail: https://en.wikipedia.org/wiki/IPv6 """ _ipv6_pat = r'(?:(?:(?:(?:[0-9a-fA-F]){1,4}):){1,4}:[^\s:](?:(?:(?:25[0-5]|(?:2[0-4]|1{0,...
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def make_data_object_name( dataset_name, year, month, day, hour, realization, forecast_period): """Create a string formatted to give a filename in the MOGREPS dataset.""" template_string = "prods_op_{}_{:02d}{:02d}{:02d}_{:02d}_{:02d}_{:03d}.nc" return template_string.format( ...
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def decode_kv_read(proto_kv_read): """Decodes Key Value Read :param proto_kv_read: Object of the key value with read contents :return: deserialized key value read contents with block num and tx_num """ kv_read = {} kv_read['key'] = proto_kv_read.key proto_version = proto_kv_read.version ...
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def get_image_url(self, image_id): """ Retrieves the image url given an image id """ return self.image_infos[image_id]['image_url']
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def evaluate_model(model, test_set): """ Evaluates trained model on test set :param model: Trained keras model :param test_set: (X_test, y_test) :return: (loss, accuracy) """ (X_test, y_test) = test_set loss, acc = model.evaluate(X_test, y_test) return loss, acc
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def not_filter(filter_predicate): """Negate a filter predicate with the logical NOT.""" return lambda properties: not filter_predicate(properties)
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def check_hit_angle(self): """Returns how well the car is facing the ball in degrees""" future_ball_location = self.target_location.flat() ball_contact_point = self.offset_ball_location.flat()-future_ball_location car_location = self.car_contact_point.flat()-future_ball_location hit_angle = ball_con...
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def make_box(center, width, height, img_shape, xywh=True): """Make a box within an image range Parameters ---------- center : list[int] ot tuple(int) the center of the box. (y, x) order. width : int box width height : int box height img_shape : list[int] ot tuple(int...
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def coins_annually(xmr_per_day: float, precision: int) -> float: """ Computes how many XMR coins you can mine annually. Formula: days_in_year = 365 xmr_per_day * days_in_year :param xmr_per_day: Float. Amount of XMR you can mine per day. :param precision: Int. Precision of computing. :retur...
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def is_apt(target): """Returns True if the target exports an annotation processor.""" return target.has_label('apt')
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def get_tax_branch(taxid, tax_tree): """ Return a list of all parents of a given taxid. The list begins with the taxid and ends with the root of the tree. """ branch = [] while taxid != 0: branch.append(taxid) # Gets the parent of current tax id taxid = tax_tree[taxid] ...
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def _best_rect_ratio_match(bricks, size, margin): """ Sort and filter list of bricks based on target ration and margin 'margin' determines how easily a brick passes filtering. Results are sorted from best matching to worst before returning the list. """ def _ratio(_size): if _size[1] == 0...
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def get_device_system_ports(cfg_facts): """Returns the system ports from the config facts as a single dictionary, instead of a nested dictionary. The ansible module for config facts automatically makes a 2 level nested dictionary when the keys are in the form of part1|part2|part3 or part1|part2. The first...
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def update(self) -> int: """Updates the edge server. Returns: int: Update duration. """ self.updated = True update_duration = self.patch + self.sanity_check # Storing update metadata self.update_metadata = { "maintenance_batch": self.simulator.maintenance_batches, ...
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def extract_fasta_file(uri: str) -> str | None: """ Returns all characters after the last slash '/'. :param uri: The URI string to process. :return: Returns any characters after the last character or None if no slash is present. """ return uri[uri.rindex("/") + 1 :] if "/" in uri else None
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import torch def sequence_mask(lengths, max_len=None): """Creates a boolean mask from sequence lengths. Args: lengths (torch.Tensor): lengths with shape (bs,) max_len (int, optional): max sequence length. if None it will be setted to lengths.max() Returns: torch.Tensor:...
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def for_stmt_defines_one_name(for_stmt): """ Returns True if only one name is returned: ``for x in y``. Returns False if the for loop is more complicated: ``for x, z in y``. :returns: bool """ return for_stmt.children[1].type == 'name'
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import glob def listFiles (wildcardstr): """ List the files names in the current directory using the wildcard argument eg te.listFiles ('*.xml') :param wildcardstr: WIld card using during the file search :returns: list of file names that match the wildcard """ return glob.glob (wildcardst...
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def _select_closest(to_search_df, target_series): """ Find row in ``to_search_df`` that is closest to the target array. Here, 'closest' is in the root-mean squared sense. In the event that multiple rows are equally close, returns first row. Parameters ---------- to_search_df : :obj:`pd.Dat...
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def percent(value): """Formats the given float as a percentage.""" return "%f%%" % (value * 100)
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def binary_search(arr, val): """Takes in a sorted list and a value. Preforms the Binary Search algorythem to see if the value is in the lsit.""" # Set the values to the end of the list left,right = 0,len(arr) while not right <= left: mid = (right + left) // 2 if val > arr[mid]: left = mid+1 ...
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def replicate(x, n): """ Return a sequence containing n copies of x. >>> replicate(True, 3) [True, True, True] If n=0, this will return the empty list. >>> replicate(101, 0) [] """ return [x]*n
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def compare_lists(list1, name1, list2, name2): """compare two lists and check for different or missing entries print out missing or different entries in list 2 compared to list 1 Parameters ---------- list1: list name1: str - name to be printed in comparison list2: s...
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import stat def mode_allows_group_or_other(st_mode): """ Returns True if st_mode bitset has group or other permissions :param st_mode: int: bit set from a file :return: bool: true when group or other has some permissions """ return (st_mode & stat.S_IRWXO or st_mode & stat.S_IRWXG) != 0
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def get_index_of_csr_data(i, j, indptr, indices): """ Get the value index of the i,j-element of a matrix in CSR format. Parameters ---------- i : int row index which is asked to get the CSR-index for j : int column index which is asked to get the CSR-index for indptr : ndarr...
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def get_kwargs_defaults(argspec): """Computes a kwargs_defaults dictionary for use by get_args_tuple given an argspec.""" arg_names = tuple(argspec.args) defaults = argspec.defaults or () num_args = len(argspec.args) - len(defaults) kwargs_defaults = {} for i, default_value in enumerate(defaults...
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def odds_to_prob(odds): """ Convert the odds given to the expected probability of the event :param odds: numeric: the odds given for the event :return: decimal: the probability of the event occurring """ return 1 / (1 + odds)
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def GetTensorFlowVersion(vm): """Returns the version of tensorflow installed on the vm. Args: vm: the target vm on which to check the tensorflow version Returns: installed python tensorflow version as a string """ stdout, _ = vm.RemoteCommand( 'echo -e "import tensorflow\nprint(tensorflow.__ve...
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def _iou(box1, box2, precision=1e-5): """ Calculate the Intersection over Union value for 2 bounding boxes :param box1: array of 4 values (top left and bottom right coords): [x0, y0, x1, x2] :param box2: same as box1 :param precision: calculate precision for calculating :return: IoU """...
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def _get_gcs_path(base_path, content_type, root_id, timestamp): """Generate a GCS object path for CAI dump. Args: base_path (str): The GCS bucket, starting with 'gs://'. content_type (str): The Cloud Asset content type for this export. root_id (str): The root resource ID for this export...
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def reshape_dimensions_single(x, begin_axis, end_axis, target_dims): """ Reshape selected dimensions in a tensor to a target dimension. Args: x (torch.Tensor): tensor to reshape begin_axis (int): begin dimension end_axis (int): end dimension target_dims (tuple or list): targ...
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def throws_exception(call, exceptions=[Exception]): """ Invoke the function and return True if it raises any of the exceptions provided. Otherwise, return False. """ try: call() except tuple(exceptions): return True except Exception: pass return False
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def dict_to_tabs( d, order=None ): """ Return tab-separated values for all values in d and ordered by the keys in order (if given). """ order = order or d.keys() return '\t'.join([ str( d[ key ] ) for key in order ])
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import click def module_template_options(func): """Merge the module template option decorators into a single one.""" template_dec = click.option("--template", "-t", default="csharp", show_default=True, ...
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def mse(C, ST, D_actual, D_calculated): """ Mean square error """ return ((D_actual - D_calculated)**2).sum()/D_actual.size
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def remove_id(word): """Removes the numeric suffix from the parsed recognized words: e.g. 'word-2' > 'word' """ return word.count("-") == 0 and word or word[0:word.rindex("-")]
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def get_mxnet_model_info(model): """Get native MXNet model details for given Keras Model. `data_names` and `data_shapes` are returned that can be used to bind the model in MXNet Module. `data_names` and `data_shapes` represents input layer name and shape. You can change the first dimension of data_shape...
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def calc_p1(p,p_p,p_m, i, cd): """Calculate the control point p1 of the current cubic Bezier curve.""" if not i: x = p.x + ((p_p.x - p.x) / cd) y = p.y + ((p_p.y - p.y) / cd) else: x1 = -(p_m.x - p.x) / cd y1 = - (p_m.y - p.y) / cd x2 = (p_p.x - p.x) / cd y2 =...
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def calculate_overlap(a: str, b: str) -> int: """ Calculates an overlap between two strings using Knuth–Morris–Pratt algorithm """ pi = [0] * (len(a) + len(b) + 1) string = b + '#' + a for i in range(len(string)): if i == 0: continue j = pi[i - 1] while j > ...
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import hashlib def sha1sum(filename: str) -> str: """ Generate a SHA1 hash of the provided file. Args: filename: Absolute path to file to hash as `str` Returns: SHA-1 hash """ h = hashlib.sha1() with open(filename, 'rb') as f: for byte_block in iter(la...
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def is_s3_schema(s: str) -> bool: """Check whether a string represents an S3 schema.""" return s == "s3://"
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def _is_domain_2nd_level(hostname): """returns True if hostname is a 2nd level TLD. e.g. the 'elifesciences' in 'journal.elifesciences.org'. '.org' would be the first-level domain name, and 'journal' would be the third-level or 'sub' domain name.""" return hostname.count(".") == 1
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def sort_data(angs, seqs, crds, ids): """ Sorts inputs by length, with shortest first. """ sorted_len_indices = [a[0] for a in sorted(enumerate(angs), key=lambda x:x[1].shape[0], reverse=False)] seqs = [seq...
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import re def checkio(data): """ ^ - not necessary with match(). The start of the string. (?=.*[0-9]) - at least one digit exists. (?=.*[A-Z]) - at least one upper case letter exists. (?=.*[a-z]) - at least one upper case lower exists. (?=\\w{10}) - the length is minimum 10. \\w+ - apply t...
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def get_bytes_asset_dict( data: bytes, target_location: str, target_name: str, ): """Helper function to define the necessary fields for a binary asset to be saved at a given location. Args: data: the bytes to save target_location: sub-directory to which file will be written,...
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def get_accuracy_func(config): """Get the accuracy function for an Audioset task. Note: The accuracy will be computed depending **only on the prediction in the last timestep**, where the last timestep refers to the **unpadded sequence**. Args: config (argparse.Namespace): T...
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def duplicate_header(header, duplicate): """Create and return an 'Duplicate header' error string""" ctx = duplicate.start_context() octx = header.start_context() errmsg = 'Duplicate header, {}{}'.format(header.name, ctx) if len(octx) > 0: errmsg = errmsg + ', original{}'.format(octx) # E...
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import collections def group_by_dtype(tensors): """ Returns a dict mapping from the tensor dtype to a list containing all tensors of that dtype. Arguments: tensors (Iterable[Tensor]): list of tensors. """ tensors_by_dtype = collections.defaultdict(list) for tensor in tensors: ...
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