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import functools import warnings def deprecated(fn): """ This is a decorator that marks functions as deprecated. It will result in a warning being emitted when the function is used. Usage: @deprecated def my_func(): pass """ @functools.wraps(fn) def wra...
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def _firstspin(bands): """Get only the bands for the first spin if multiple are contained.""" if bands.ndim not in [2, 3]: raise ValueError('invalid input') if bands.ndim == 3: bands = bands[0] return bands
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def remap_interval(val, min1, max1, min2, max2): """ Remap a value from one range to a new range. - val: the value to remap - min1: the minimum for the old range `val` is within - max1: the maximum for the old range `val` is within - min2: the minimum for the new range - max2: the maximum for t...
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import tokenize import token def _signature_strip_non_python_syntax(signature): """ Private helper function. Takes a signature in Argument Clinic's extended signature format. Returns a tuple of three things: * that signature re-rendered in standard Python syntax, * the index of the "self"...
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from typing import Tuple from typing import List import re def get_ranges_and_departures( header: str, ) -> Tuple[List[List[Tuple[int, int]]], List[int]]: """ Parse the header of the incoming data. It's formatted as:: name: #-#[ or #-# [...]] Return the list of tuples of ranges formatted as ...
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def energy_photon(frequency, wavelength): """Usage: Calculate the energy of a photon using frequency and wavelength """ equation = ((6.62607004e-34 )*3e+8)/wavelength return equation
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def sum_of_numbers(list_of_numbers): """Returns sum of the numbers in the list.""" return sum(list_of_numbers)
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import json def json_dumps_compact(data): # noqa: CCR001 """Format provided dictionary into compact JSON. Lists will be in one line rather than split on new lines. Args: data: JSON-serializable dictionary Returns: str: JSON-formatted string with lists compacted into a single line ...
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import json def load_session_data(input_file_name): """Load and return session data from a json file.""" with open(input_file_name, "r") as infile: session_data = json.load(infile) return session_data
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def cube(x): """ Cube. """ return pow(x, 3)
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def splitter(value): """ Conversion routine for lists. Accepts comma-separated strings. :param str value: The value to convert. :returns: A list of strings. :rtype: ``list`` """ return [v.strip() for v in value.split(',')]
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def _round(value): """ round redefinition for using the same format consistently. """ return round(value, 1)
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def floatToString3(f: float) -> str: """Return float f as a string with three decimal places without trailing zeros and dot. Intended for places where three decimals are enough, e.g. node positions. """ return f"{f:.3f}".rstrip("0").rstrip(".")
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import re def strip_ansi(text): """ Removes all ANSI escape codes in a given text. """ return re.sub(r"\x1b\[(\d|;)+m", "", text)
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def bytes_to_human_readable_repr(b: bytes) -> str: """Converts bytes into some human-readable representation. Unprintable bytes such as the nul byte are escaped. For example: >>> b = bytes([102, 111, 111, 10, 0]) >>> s = bytes_to_human_readable_repr(b) >>> print(s) foo\n\x00 ...
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def has_access(user, asys): """Returns true, if the user has access to the configuration of the given AS.""" return user.is_superuser or asys.owner.users.filter(id=user.id).exists()
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def text_urldata(urldata): """ Convert ``urldata`` into text. :param urldata: a dictionary mapping bytes to lists of bytes. :return: a dictionary mapping text to lists of text. """ return dict([(k.decode("utf-8"), [vv.decode("utf-8") for vv in v]) for [k, v] in urldata.items()...
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def parse_reaction(line): """ Takes a string declaring a new reaction in an Avida environment file and returns the name of the associated task. """ sline = line.split() return sline[2].strip()
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def make_entry_idx(name='Catalan', scriptable='yes', spell='yes'): """ Pass values for name, scriptable, spell attributes to the idx entry tag. Args: name (str), scriptable (str), spell (str): <idx:entry> attributes Returns: <idx:entry> tag with attributes. Notes: A sequentia...
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def parse_busco_result(path_to_busco_result): """ Args: path_to_busco_log (str): Path to the mash log file. Returns: dict: Parsed busco report For example: { "complete_single": 778, "complete_duplicate": 1, "fragmented": 1, "missing": 1, ...
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def calc_median(nums): """Calculate the median of a number list.""" N = len(nums) nums.sort() if N % 2 == 0: m1 = N / 2 m2 = (N / 2) + 1 m1 = int(m1) - 1 m2 = int(m2) - 1 median = (nums[m1] + nums[m2]) / 2 else: m = N / 2 m = int(m) - 1 ...
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def toDictWithShieldsKeys(count, color, logoName, style) : """Creates a Python dictionary with all of the necessary keys for a Shields endpoint. Keyword arguments: count - The count of the number of repositories using an action. color - The color for the data portion of the badge. logoName - A ...
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def find_range(array, win): """ Find indices corresponding to win[0] and win[1] inside array. Args: array: <list> an array of values sorted in descending order win: <tuple> window ranges Returns: i0: <int> index of the first window limit i1: <int> index of the second window ...
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def hhmm(time): """ textual representation of time in format HH:MM """ return time.strftime("%H:%M") if time else ''
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def is_ann_profile(profile): """ Check if a profile string is for DM annihilation """ tokens = profile.split('_') return tokens[-1] in ['point', 'map', 'radial']
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def dict_delta(dict_a, dict_b): """ recursively compares two dictionaries, returns the dictionary of differences. aka retval = dict_b - dict_a """ result = dict() for k in dict_b: if k in dict_a: if isinstance(dict_a[k], dict) and isinstance(dict_b[k], dict): ...
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def create_sparse_dataset(py_obj, h_group, name, **kwargs): """ dumps an sparse array to h5py file Parameters ---------- py_obj (scipy.sparse.csr_matrix,scipy.sparse.csc_matrix, scipy.sparse.bsr_matrix): python object to dump h_group (h5.File.group): group to dump data into. n...
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import hashlib def get_digest(content): """Get the MD5 has of the content, suitable for use as the etag""" return "{0}".format(hashlib.md5(content).hexdigest())
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def quickSort(alist): """ Quick sort algrithm, In-place version. """ def partition(alist, left, right): pivot = alist[right - 1] i = left - 1 for j in range(left, right): if alist[j] < pivot: i += 1 (alist[i], alist[j]) = (alist[j], al...
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def maxBit(int_val): """Return power of 2 for highest bit set for integer""" length = 0 count = 0 while (int_val): count += (int_val & 1) length += 1 int_val >>= 1 return length - 1
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def meraki_get_radio_settings(meraki): """Query the Meraki API for the current radio settings.""" path = meraki.construct_path("get_one", custom={"serial": meraki.params["serial"]}) return meraki.request(path, method="GET")
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def instance_name(msg_name, id): """Generate the name of an instance from a msg name""" return "_" + msg_name.lower() + str(id)
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def logistic_est_loss_deriv(y_est, y): """ Compute the derivative of the logistic loss with respect to its input variable, given only the output y_est of the logistic function Parameters ---------- y_est: float Estimated output of the logistic function y: float Target v...
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import requests import json def get_weather(city_name, weather_api): """ given a city name and api key for Open Weather Map, return local weather conditions :param city_name: name of the city :type city_name: str :param weather_api: Open Weather Map API :type weather_api: str :return: r...
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def get_hardware_info(butler, run_num): """Return the hardware type and hardware id for a given run Parameters ---------- butler : `Bulter` The data Butler run_num : `str` The number number we are reading Returns ------- htype : `str` The hardware type, either '...
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import re def get_tensor_names(string_obj): """ Get tensor names from the given string. :param obj: a string representing an object from gc.get_objects() :return: the name of the tensor variable >>> names = get_tensor_names(log2) >>> assert len(names) == 3 >>> assert names[0] == "tensor1...
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def format_to_time_range(begin_hour, begin_minute, end_hour, end_minute): """ ζ ΌεΌεŒ–θ΅·ε§‹ζ™‚ι–“θˆ‡η΅ζŸζ™‚ι–“η‚Ίζ™‚ι–“η―„εœοΌŒθΌΈε…₯θ΅·ε§‹ηš„ε°ζ™‚θˆ‡εˆ†ι˜οΌŒη΅ζŸηš„ε°ζ™‚θˆ‡εˆ†ι˜οΌŒζ ΌεΌεŒ–η‚Ί {:02}:{:02} - {:02}:{:02}, e.g 07:22 - 22:17 ε¦‚ζžœθ³‡ζ–™ζ²’ζœ‰η΅¦ι½ŠοΌŒζœƒε›žε‚³ None Args: begin_hour(int): ι–‹ε§‹ηš„ε°ζ™‚ e.g 7 begin_minute(int): ι–‹ε§‹ηš„εˆ†ι˜ e.g 22 end_hour(int):η΅ζŸηš„ε°ζ™‚ e.g 12 end_minute(int):η΅ζŸηš„εˆ†ι˜ e.g 45 ...
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import pathlib import io def source(request, filepath_pseudos): """Return a pseudopotential, eiter as ``str``, ``Path`` or ``io.BytesIO``.""" filepath_pseudo = pathlib.Path(filepath_pseudos()) / 'Ar.upf' if request.param is str: return str(filepath_pseudo) if request.param is pathlib.Path: ...
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import uuid def generate_page_uuid(url: str) -> str: """Generate a consistent UUID based on the MD5 hash of a URL.""" return str(uuid.uuid3(uuid.NAMESPACE_URL, url))
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def compute_ks_for_conv2d(w_in: int, w_out: int, padding: int=1) -> int: """Compute the kernel size to use with conv2d when we want the output tensor has smaller spatial dimensions, ie. w_out < w_in. We assume the filter has stride=1. Computation is based on the formula w_out = floor(w_in - k + ...
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def parse_media_type(file_ext, EXT): """ Given a file extension, get the type of media One of 'photo', 'video' or 'remove' file_ext {str}: file extension to parse EXT {Extension}: Extension object type of media {str} """ for attr_name in [x for x in dir(EXT) if not x.startswith('__')]: ...
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def PoolVec3Array_to_list(array): """Return a copy of the array as a list of 3-element lists of floats. This is not efficient.""" result = [] for elt in array: v3 = [elt.x, elt.y, elt.z] result.append(v3) return result
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from unittest.mock import call def PostMultiLineNotice_Call( message ): """Return a mock.call object for a call to vimsupport.PostMultiLineNotice with the supplied message""" return call( 'echohl WarningMsg | echo \'' + message + '\' | echohl None' )
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import inspect def function_exists(module, function): """ Check Python module for specificed function. :param module: Python module :type module: ``types.ModuleType.`` :param function: Name of the Python function :type ``str`` :return: ``bool`` """ return hasattr(module, functio...
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import decimal def remove_exponent(d: decimal.Decimal) -> decimal.Decimal: """ Util function for removing the exponent and trailing zeroes of a decimal. From https://docs.python.org/3/library/decimal.html#decimal-faq """ return d.quantize(decimal.Decimal(1)) if d == d.to_integral() else d.normali...
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import re def find_problem_name(contents): """ Find the name of the problem by reading the first comments if it exists. If no comments are found 'gdproblem' is used by default. """ pattern = re.compile(r"(?<=#).*?\n", re.DOTALL) match = pattern.search(contents) if match: return ma...
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def get_content_type(mimetype, charset): """Return the full content type string with charset for a mimetype. If the mimetype represents text the charset will be appended as charset parameter, otherwise the mimetype is returned unchanged. :param mimetype: the mimetype to be used as content type. :p...
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def num_physical_imei_shards(conn): """ Helper function to return the number of physical shards for IMEI-shared partitions. Arguments: conn: dirbs db connection object Returns: number of physical imei shard in the schema """ with conn.cursor() as cursor: cursor.execute('...
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def _time_auto_unit(time_max): """ Automatically set the unit for time axis according to the absolute maximum of the input data. This is a separate function for ease of testing and for use across different plots. Parameters ---------- time_max : float Absolute maximum of the time d...
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def get_field(DataModelClass, field_name): """ Returns a SQLAlchemy Field from a field name such as 'name' or 'parent.name'. Returns None if no field exists by that field name. """ # Handle hierarchical field names such as 'parent.name' if '.' in field_name: relationship_name, field_name...
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def sym_has_params(sym, input_names): """ Judge if a model has parameters. Args: sym: A Symbol instance of the model. input_names: A list of input tensor names. Return: True for the model has parameters and Flase for not. """ args = set(sym.list_arguments()) params = args - set(input_names) ...
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def containsConflictMarker(text): """ Returns true if there is a conflict marker in the text. """ return "/!\\ '''Edit conflict" in text
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from operator import inv def inverse(matrix): """ Returns the inverse of a given matrix. Args --- `matrix : np.array` A numpy matrix Returns --- `inv : np.array` The inverse matrix """ invMatrix = inv(matrix) return invMatrix
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def get_num_tablets_per_dose(dose, strength, divisions=1): """Calculates the number of tablets to give based on the dose given and the strength of the tablets. Tablets can be divided in quarters. :params: dose (Float) - The dose in mg of what the patient should be receiving strength (Float) - The ...
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import math def penalize_time(action_log): """Returns penalization factor for time taken.""" return 1 / math.log(len(action_log))
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from pathlib import Path from typing import Tuple from typing import List def txt_of_ids_to_list(path: Path) -> Tuple[List[str], List[str]]: """Reads a .txt file with a slide_id,case_id per row and returns two lists of slide ids and case ids""" content_slide: List = [] content_patient: List = [] with ...
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import uuid def create_check_mode_user(console, create_props, update_props): """ Create and return a fake local User object. This is used when a user needs to be created in check mode. """ type_ = create_props['type'] props = dict() # Defaults for some read-only properties if type_ ==...
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import re def check_urn(urn_string: str) -> str: """ Checks that the urn string follows the correct pattern. Parameters ---------- urn_string : str Raises ------ ValueError This raises an exception for a poorly formed or unmapped CRSD urn. """ if not isinstance(urn_s...
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def duplicates(iterable): """Return duplicated (hashable) items from iterable preserving order. >>> duplicates(iter([1, 2, 2, 3, 1])) [2, 1] """ seen = set() return [i for i in iterable if i in seen or seen.add(i)]
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def length(*args, **kwargs) -> int: """ Computes the total string length for the args and kwargs passed :param args: :param kwargs: :return: """ return sum(len(x) for x in list(args) + list(kwargs.values()))
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def doc_name(s): """ Returns the operator's name in a human readable format for Blender's operator search. Removes POWER_SEQUENCER_OT_ from an operator's identifier and converts it to title case. """ out = s.split("_OT")[-1] out = out.replace("_", " ").lstrip().title() return out
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def get_primality_testing_rounds(num: int) -> int: """λ°€λŸ¬-라빈 μ†Œμˆ˜ νŒμ •λ²•μ„ μˆ˜ν–‰ν•  λ•Œ, λ°˜λ³΅ν•  횟수λ₯Ό κ΅¬ν•œλ‹€. 1300 <= num: k = 2 850 <= num: k = 3 650 <= num: k = 4 300 <= num: k = 10 300 > num: k = 30 ref : http://cacr.uwaterloo.ca/hac/about/chap4.pdf """ nbits = num.bit_length() if nbits >= 1300: ...
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def fileTOdictionary(filename): """ This function takes a file and converts it to a sparse matrix nested dictionary, [age][icd_column_number].""" fh = open(filename) header = next(fh) data_dict = {} numlist = range(1,36) for line in fh: line = line.strip().split(",") for x in num...
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def homogeneous_to_cartesian(homogeneous_point): """ Convert Homogeneous coordinates to Cartesian coordinates :param homogeneous_point: Homogeneous coordinates :return: Cartesian coordinates """ return homogeneous_point[:, :-1]
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import random def walk(n, seed=1): """ Generate a random walk. The walk is initialized at zero, and this initial state is included in the walk. :param n: the number of steps of the walk. :param seed: the seed of for the random number generator. Each walk has an indepen...
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from typing import Any from typing import Hashable def is_hashable(obj: Any) -> bool: """ Checks if the given object is hashable. :param obj: The object to check. :return: True if the object is hashable, False if not. """ return isinstance(obj, Hashable)
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def tuples( relation ): """ Returns the entire relation as a Python list of tuples. """ return [t for t in relation]
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def _is_ipv6_addr_link_local(ip_addr): """Indicates if a given IPv6 address is link-local""" return ip_addr.lower().startswith('fe80::')
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def _find_pos(obj) -> str: """ Pass in a Dataset/DataArray to find the coordinate position (rho/u/v) of the data to be worked with. If obj is a Dataset, 'rho' will be searched first, and then u/v. pos = _find_pos(obj) """ pos = None if 'eta_rho' in obj.dims or 'xi_rho' in obj.dims: ...
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def ragged_to_dense(rt_input, default_value=None, shape=None): """Create a dense tensor from a ragged tensor.""" return rt_input.to_tensor(default_value=default_value, shape=shape)
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def load_from_file(path): """ Load file in binary mode. Args: path(str): Path of an existed file. Returns: bytes: Content of file. """ with open(path, 'rb') as f: data = f.read() return data
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def R0(beta, d, nu, mu1): """ Basic reproduction number. Parameters: ----------- beta average number of adequate contacts per unit time with infectious individuals d natural death rate nu disease induced death rate mu1 Maximum recovery rate """ ret...
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def normalize_images(images): """ Normalizes each pixel in an image to a value between 0-1 by dividing each pixel by 255.0 """ return images / 255.0
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from typing import List def flatten_lines(lines: List[str]) -> List[str]: """ Combines lines that were split with line continuations i.e. this is \ one line => this is one line """ ret = [] n = 0 while n < len(lines): line = lines[n] while line.endswit...
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import torch def normalize_tensor(in_feat, eps=1e-10): """L2 normalization. Args: in_feat (Tensor): Tensor with shape [N, C, H, W]. eps (float, optional): Epsilon value to avoid computation error. Defaults to 1e-10. Returns: Tensor: Tensor after L2 normalization per-i...
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def entity_seqs_equal(expected, predicted): """ Returns true if the expected entities and predicted entities all match, returns false otherwise. Note that for entity comparison, we compare that the span, text, and type of all the entities match. Args: expected (list of core.Entity): A list ...
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def _is_scheduling_fair(enqueued_slots, dequeued_slots): """ We enqueued same number of requests for every slot. Assert correct order, e.g. >>> enqueued = ['a', 'b', 'c'] * 2 >>> correct = ['a', 'c', 'b', 'b', 'a', 'c'] >>> incorrect = ['a', 'a', 'b', 'c', 'c', 'b'] >>> _is_scheduling_fair(...
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def get_embedded_items(result_collection): """ Given a result_collection (returned by a previous API call that returns a collection, like get_bundle_list() or search()), return a list of embedded items with each item in the returned list considered a result object. 'result_collection' a JSON ob...
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def tidyBBB( BBB:str ) -> str: """ Change book codes like SA1 to the conventional 1SA. BBB is always three characters starting with an UPPERCASE LETTER. """ return (BBB[2]+BBB[:2]) if BBB[2].isdigit() else BBB
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import logging def str2ll(level): """ Converts the log level argument to a numeric value. Throws an exception if conversion can't be done. Copied from the logging howto documentation """ retval = getattr(logging, level.upper(), None) if not isinstance(retval, int): raise ValueError('I...
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def voltage_to_direction(voltage: float) -> str: """ Converts an anolog voltage to a direction Arguments: - voltage: Voltage float value form the MCP3008. values are between 0 and 3.3V Returns: - Direction coresponding to an input voltage """ if voltage < 0.20625 or voltage > 3...
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def mass_hpa_wing( span, chord, vehicle_mass, n_ribs, # You should optimize on this, there's a trade between rib weight and LE sheeting weight! skin_density, n_wing_sections=1, # defaults to a single-section wing (be careful: can you disassemble/transport this?) ...
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def annotate(items, fn, sort_fn=None, reverse=True): """Return a dict with elements of items as keys and their values under fn as their values, sorted by their values under sort_fn. If sort_fn isn't specified, use fn by default. >>> annotate([4, 3, 2, 1], fn=lambda x: x**2, sort_fn=lambda x: (-2)**x, reve...
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def _write_swift_version(repository_ctx, swiftc_path): """Write a file containing the current Swift version info This is used to encode the current version of Swift as an input for caching Args: repository_ctx: The repository context. swiftc_path: The `path` to the `swiftc` executable. ...
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def any(_): """Matches anything""" return True
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import re def get_total_tag_counts(tag_bed_file): """ Get total tag counts given the current experimental run file should be a bed file. """ counts =0; infile = open(tag_bed_file,'r'); for line in infile: """ check to make sure not a header line """ if not re.match(...
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def _env(env): """Parse multiline KEY=VALUE string into dict.""" return dict((key.strip(), val) for line in env.strip().splitlines() for key, _, val in [line.partition('=')])
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from typing import List import itertools def weights_parameters(fields: List[str], weights: List[float]) -> List[str]: """Generate Solr field weight combinations for given field values and weights e.g. for ["content", "title"] and [0.1, 1.0] it generates ["content^0.1 title^0.1", "content^0.1 title^1.0", ...
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def has_og_property(meta_tag, properties): """ Checks if the given meta tag has an attribute property equals to og:something, something being in properties. Returns: None if the given tag "is" not og:something. something otherwise. """ try: if not meta_tag["property"].startswith(...
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def generate_init_belief(state_space): """ Generate the initial belief distribution over states Initially, there is uniform belief for all states where no machine in network is compromised """ num_valid_init_states = 0 for s in state_space: if not s.has_compromised_machine(): ...
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def char_count(word): """Return a dictionary with the incidence of each character.""" rdict = {} chars = list(word) # turn string into list for c in chars: if c in rdict: rdict[c] += 1 else: rdict[c] = 1 return rdict
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from typing import List def loadMatrix(file_name: str) -> List[List[float]]: """ Import matrix from file. Matrix is stored in row oriented list. Such that each row is a nested list. """ with open(file_name, 'r') as file: row_count = int(file.readline()) column_count = int(file...
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def isNotBlank(s): """Check if string is empty or whitespace-only """ return bool(s and s.strip())
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import struct def itoby(v, length): """ Converts an unsigned integer to a bytearray of specified length. """ fmt = {1: "<B", 2: "<H", 4: "<L", 8: "<Q"}[length] return bytearray(struct.pack(fmt, v))
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def encode_special_characters(string: str) -> str: """Make string safe for urls as required by REST APIs""" char_mapping = {"#": ";23", "&": ";26", "/": "|", "*": ";2A"} for char, encoded_char in char_mapping.items(): string = string.replace(char, encoded_char) return string
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import json def convert_type(base_list): """ Convert a list of strings into their native python types Example: ["pyon", "1", "1.5"] -> ["pyon", 1, 1.5] :param base_list: List of strings :return: Converted list of native types """ converted_list = [] for item in base_list: try...
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def replace_special_characters(text): """Replace special characters in a string Makes a copy of string 'text' with special characters (i.e. non-alphanumeric) replaced by underscores, and spaces replaced by hyphens. This is useful for generating strings to use in HTML documents.""" ele = [] ...
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import torch def pick_valid_points(coord_input, nodata_value, boolean=False): """ Pick valid 3d points from provided ground-truth labels. @param coord_input [B, C, N] or [C, N] tensor for 3D labels such as scene coordinates or depth. @param nodata_value Scalar to indicate NODATA element of grou...
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def ByteString2String(Bstring): """ Convenience function to convert a byte string to string. """ return str(Bstring, 'utf-8')
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def fakultaet(integer): """berechnet die FakultΓ€t n! einer Zahl n """ if integer == 0: return 1 erg = 1 for i in range(integer, 1, -1): erg = erg*i return erg
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