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def ott_str_as_int(o): """Returns the OTT Id `o` as an integer if `o` is an integer or a string starting with ott (case-insensitive). Raises a ValueError if the string does not match ^(OTT)?[0-9]+$ """ if isinstance(o, int): return o if o.startswith('ott'): return int(o[3:]) try...
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def parse_residue_spec(resspec): """ Parse a residue specification: [<chain>-][<resname>][[#]<resid>] where resid is /[0-9]+/. If resname ends in a number and a resid is also specified, the # separator is required. Returns a dictionary with keys 'chain', 'resname', and 'resid' for the fields...
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from typing import Dict from typing import Any import yaml def load_config(filename: str) -> Dict[str, Any]: """Load the configuration from a yaml file. :param filename: The path of the yaml file. :type filename: str :return: A dictionary of the configuration. :rtype: Dict[str, Any] """ w...
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def get_index(seq, value): """ Find the first location in *seq* which contains a case-insensitive, whitespace-insensitive match for *value*. Returns *None* if no match is found. """ if isinstance(seq, str): seq = seq.split() value = value.lower().strip() for i, item in enumerate(...
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import yaml def read_yaml_config(config_file: str) -> dict: """ Parse a yaml config file Args: config_file (str): path to config file to parse Returns: dict: the configuration dictionary """ with open(config_file) as f: return yaml.load(f, Loader = yaml.FullLoader)
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from typing import Union def get_non_unique_numbers(numbers: list[int]) -> Union[int, list[int]]: """ Return non-unique numbers in a list of numbers. If only one non-unique number is found, return this number. if all numbers is unique, raise ValueError. Usage: >>> get_non_unique_numbers([...
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import re def remove_yaml_from_markdown(markdown_text: str) -> str: """Function remove YAML from text of markdown file. Args: markdown_text: text of markdown file. Returns: Text of markdown file without YAML. """ return re.sub(r"^---(.|\n)*?---\n", "", markdown_text.lstrip()).lstrip(...
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def cal_origin_responsetime(dfs): """ calculates origin_responsetime as, sum("turnaroundtimemsec") where cachestatus == 0 and cacherefreshsrc == 'origin' sample output, ``` "origin_response_time": 0, ``` """ return int( dfs.query("cachestatus == 0 and cacherefreshsrc ==...
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def abs_sqd(x): """Element-wise absolute value squared.""" return x.real**2 + x.imag**2
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import copy def isolate_and_merge_station(inv, network_id, station_id): """ Takes an inventory object, isolates the given station and merged them. Merging is sometimes necessary as many files have the same station multiple times. Returns the processed inventory object. The original one will not ...
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def get_gitbranch_from_url(url) : """extracts the branch name from an url string (after the optional '#'), returns None if no branch name specified. :param url: an url string, with optional '#' branch name appended :returns: the extracted branch name, or None """ if '#' in url : ...
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import re def get_ioc_value_from_ioc_name(ioc_obj): """ Extract SHA-256 from string: ([file:name = 'blabla' OR file:name = 'blabla'] AND [file:hashes.'SHA-256' = '1111'])" -> 1111 """ ioc_value = ioc_obj.get('name') try: ioc_value = re.search("(?<='SHA-256' = ').*?(?=')", ioc_value).gr...
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import torch def rank_segments(e, feature_segments): """ rank segments of e :param e: explanation e :param feature_segments: unranked feature segments (list of (sensor, t_start, t_end)) :returns: sorted list of the feature segments with the mean score as well """ scores = [torch.mean(e[d, ...
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def neighbour(t, i, j): """ Get the triangle edge neighbour of a triangle. :param t: List of triangle indices in the mesh. Size (n, 3) where n is the number of triangles. :param i: Triangle index. :param j: Edge index. :returns: Index of triangle neighbouring triangle i along edge j, or None if...
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import re def license_number(value, space=True): """ Regex to validate is the string passed is a valid Zimbabwean driver's license :param value: The string passed :param space: (Optional) if you want a space between the first 6 numbers and the last two letters :return: boolean """ is_vali...
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from datetime import datetime def get_section1() -> dict: """Returns the section1 part of the message to be encoded.""" now = datetime.utcnow() section1 = { 'originating_centre': 177, 'sub_centre': 0, 'data_category': 31, # oceanographic data 'sub_category': 4, ...
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def render_player_card(context, player): """Render a player in card format.""" return {"player": player, "request": context["request"]}
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def derive_s3_path(image_path): """ Given a path or s3 key, derives the expected s3 prefix based on the base filename Arguments --------- image_path : string the s3 key or file path to an nii.gz file Return ------ path, basename : tuple (string, string) the path of the...
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def determine_metric(metrics, data): """ Util function to check which of the provided eval metrics is available in the current data dictionary """ found = False eval_metric = None for metric in metrics: if metric in data.keys(): eval_metric = metric found = True ...
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def gen_range_str(min, max): """ Generates a string that shows a minimum and maximum value, as well as the range. Example: ``<min> |-- <range> --| <max>`` Parameters ---------- min : float Minimum value. max : float Maximum value. Returns ------...
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def remove_quotes(fname_string): """Remove quote marks from beginning and end of string""" return fname_string.replace('"', '').replace("'", '')
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import ipaddress def int32_to_ip(int32): """ Takes an unsigned 32 bit number and returns a string representation of its IPv4 address. :param int32: 32 bit integer value. :return: string representation of int32 value. """ return str(ipaddress.IPv4Address(int32))
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def query_str(work): """Return string to query work on scholar""" return work.title + " " + work.author
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import pprint def display_with_pformat(name: str, bases: tuple, cls_dict: dict): """ Metaclass which overrides the :meth:`__str__` of a class to use the `pprint` module to pretty-format the class's default :meth:`__repr__`. """ def __str__(self): return pprint.pformat(self) cls_dict['...
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import re def escape_filename(value): """ Escape forbidden symbols in a file name. """ value = re.sub(r'[<>:\/\\|?*\'"’“”„«»…–—¡¿]', ' ', str(value)) value = value.encode('ascii', errors='replace').decode().replace('?', ' ') value = value.strip() return value
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from typing import OrderedDict def flatten_json(dictionary): """Recursively flattens a nested json. :param dictionary: dict object to flatten :return: dict object containing flat json. """ out = {} def flatten(element, name=''): if type(element) is dict: for a in element:...
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import zlib def _crc32_checksum(filepath): """Calculate the checksum of a file using CRC32.""" with open(filepath, "rb") as f: checksum = zlib.crc32(f.read()) return checksum
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def modulo_complejos(num:list) -> list: """ Funcion que realiza el modulo de un numero complejo. :param num: lista que representa el numero complejo :return: lista que representa el modulo del numero complejo. """ res = [] res.append(round((num[0]**2 + num[1]**2)**(0.5), 2)) return res
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def get_doc_data(gold_summ_docs): """ This function takes in a list of gold summary Document objects and returns a dictionary of the data. Keys are document object and values are list of tuples of (sent, set of nouns) for each sent in the doc. {doc_obj: [(sent_index, sent_noun_set)] """ do...
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from typing import List from typing import Tuple def list_to_tuple(list_: List) -> Tuple: """ Recursively transforms a list of lists into tuples of tuples Parameters ---------- list_: (nested) list Returns ------- (nested) tuple """ return tuple( list_to_tuple(...
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def getInt(inputtext=''): """Prompts the user for an integer. Returns the integer entered by the user. If a non-integer is entered, the user is prompted to re-enter a value until an integer is submitted. """ while 1: try: outputint=int(input(inputtext + '\nPlease Enter an Integer:\n')) ...
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def bl_calculate_deposit(amount: int, percentage: int, years: int) -> float: """ This function calculate amount of deposit :param amount: Start amount :param percentage: Bank percentage :param years: Time of deposit :return: Amount of deposit """ return amount * (1 + (percentage / 100) ...
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from typing import Tuple def pad_frame(frame_data: bytes, size: Tuple[int, int]) -> bytes: """Pads frame data to fit the size. Args: frame_data (bytes): Any byte string size (Tuple[int, int]): Resolution of the image Returns: bytes: Padded frame data """ return frame_data...
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def num_to_gast(num): """ takes a number and converts it to gast """ gast = {"type": "num", "value": num} return gast
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def is_jobtype_match_queue(jobtype, pq_dict): """ Check if analy/prod job can be run in a PanDA queue :param jobtype: str: analy or prod :param pq_dict: dict: PQ info :return: bool """ pq_type = pq_dict['type'] if 'type' in pq_dict else 'unified' pq_jt_matrix = { 'unified': ('pro...
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from typing import Dict from typing import Any def wavefunction2d() -> Dict[str, Any]: """Plot defaults for plotting.wavefunction2d""" return {"figsize": (8, 3)}
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def args2string(args: dict) -> str: """Convert args dictionary to a string. Args: args (dict): A dictionary that contains parsed args. Return: A converted string. Example: >>> args = { 'arg1': [value1, value2], 'arg2': [value3], 'arg3': [val...
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def format_syntax_error(e: Exception): """ Returns a formatted string of a SyntaxError. Stolen from https://github.com/Rapptz/RoboDanny/blob/master/cogs/repl.py#L24-L25 """ return "{0.text}\n{1:>{0.offset}}\n{2}: {0}".format(e, "^", type(e).__name__).replace("\n\n", "\n")
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def seconds(dhms): """Convert a time string "[[[DD:]HH:]MM:]SS" to seconds. """ components = [int(i) for i in dhms.split(':')] pad = 4 - len(components) if pad < 0: raise ValueError('Too many components to match [[[DD:]HH:]MM:]SS') components = [0] * pad + components return sum(i * j...
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def get_sorted_vocab(d): """ Sort the entire vocabulary (keys and keys of their value dictionaries). Input d -- dictionary mapping word-pairs to counts, created by cooccurrence_matrix(). We need only the keys for this step. Output vocab -- sorted list of strings """ vocab ...
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def getSwaggerPaginationDef(resultsPerPage): """Build swagger spec section for pagination""" return { "name": "page", "type": "int", "in": "query", "description": "The page number for this paginated query ({} results per page)".format(resultsPerPage) }
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def get_input(prompt): """Get input (python 3 required).""" return input(prompt)
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import torch def ones(shape): """All ones.""" initial = torch.ones(shape, dtype=torch.float32) return torch.nn.Parameter(initial)
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def LPStoGPM(Vlps): """ Convertie le debit volumique en gpm vers l/sec Conversion: 3.7854118 l = 1 gallon :param Vlps: Debit volumique [l/sec] :return Vgpm: Debit volumique [gpm] """ Vgpm = Vlps / 3.7854118 * 60 return Vgpm
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import torch def subsequent_mask(lens): """Mask out future word Args: lens: (bs,) Return: mask: (bs, max_len, max_len) """ bs, max_len = len(lens), max(lens) mask = torch.ones([bs, max_len, max_len]).tril_(0) mask = mask > 0 return mask
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import torch import itertools def pit_loss( estimate: torch.Tensor, target: torch.Tensor, axis: int, loss_fn=torch.nn.functional.mse_loss, return_permutation: bool = False ): """ Permutation invariant loss function. Calls `loss_fn` on every possible permutation betw...
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import struct def pack128(int_val): """ pack a 128-bit integer in big-endian format """ max_int = 2 ** (128) - 1 max_word_size = 2 ** 32 - 1 if int_val <= max_word_size: return struct.pack('>L', int_val) words = [] for i in range(4): word = int_val & max_word_size ...
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def partTimeStamp(timeStamp): """ Part the TimeStamp into date and time for writing in Measurementparameterlist :param timeStamp: :return: date, time """ date = timeStamp.split('_')[0] time = timeStamp.split('_')[1] return date, time
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def type_chain(iterable, type_iterable): """ Compares the type chain of an iterable, checks with only the first element Args: iterable (list): a list type_iterable (list): type chain Returns: bool: If the type chain is true for the iterable. """ for c_type in type_iterable: ...
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def versiontuple(v, version_index=-1): """ convert a version string to a tuple of integers argument <v> is the version string, <version_index> refers o how many '.' splitted shall be returned example: versiontuple("1.7.0") -> tuple([1,7,0]) versiontuple("1.7.0", 2) -> tuple([1,7]) versiontuple(...
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def quantize_verts(verts, n_bits=8): """Convert vertices in [-1., 1.] to discrete values in [0, n_bits**2 - 1].""" min_range = -0.5 max_range = 0.5 range_quantize = 2 ** n_bits - 1 verts_quantize = (verts - min_range) * range_quantize / ( max_range - min_range) return verts_quantize....
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def pad_and_join_list_of_strings(string_list: list, str_size: int): """Pad each entry to a defined size and join the padded entries into one string""" for i in range(len(string_list)): string_list[i] = string_list[i].ljust(str_size) result = "".join(string_list) return result
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def format_word(raw, trs=None, sense=None): """Format a word from a template argument, with possibly a transcript and a sense attached to it. """ string = "<i>" + raw.value + "</i>" if trs is not None: string += """, <span class="transcript">%s</span>""" % trs.value if sense is not None:...
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def std_ref_form(ref_string): """ Deletes unnecessary chars from the string. Seperates combined references. returns the refernces in a list. """ if ' corr.' in ref_string: ref_string = ref_string.replace(' corr.','') while ',' in ref_string: ref_string = ref_string.repla...
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def sort_positions(positions): """ Utility routine to take two corner values are return the x and y range. Parameters ---------- positions: A four element list or numpy array of float values; values are assumed to be [x1. y1, x2, y2] for two corner positions (x1...
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def _v_sum(t_arr, i): """ Generates the coefficient V for barycentric coordinates Parameters ---------- t_arr : iterable of floats values of t i : int index of current point. Returns ------- v_i : float coefficient V. """ n = len(t_arr) prod_coe...
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def _agg_sum(iur, item, sims, use): """ Sum aggregate Args: iur(matrix._CSR): the item-user ratings matrix item(int): the item index in ``iur`` sims(numpy.ndarray): the similarities for the users who have rated ``item`` use(numpy.ndarray): positions in sims and the rating ro...
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def swap_column(content, col_index, col_info=[]): """ Swap column position into the table Arguments: - the table content, a list of list of strings: - First dimension: the columns - Second dimensions: the column's content - cursor index for col - optional i...
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def replace_string(string: str, from_idx: int, to_idx: int, repl: str) -> str: """ Replaces specified part of `string` from `from_idx` to `to_idx` with `repl` string. Example: >>> input_string = 'abcde123fghij' >>> result_string = replace_string(input_string, 5, 8, '000000000') >>> p...
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import copy def obfuscate_password(config: dict) -> dict: """Obfuscate password value in auth_basic config :param config: config from ExternalTaskWorker or ExternalTaskClient :returns: _config with obfuscated password """ _config = copy.deepcopy(config) _auth = _config.get('auth_basic') i...
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from typing import List from typing import Tuple def find_insertion_index_for_version(content: List[str], version: str) -> Tuple[int, bool]: """ Finds insertion index for the specified version from the .rst changelog content. :param content: changelog split into separate lines :param version: version...
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from typing import List from typing import Dict def calc_freq(input_list:List[int]) -> Dict[int, int]: """ Return Dict with Count of each number present input List Parameters ---------- input_list : List[int] List of integers Returns ------- Dict[int, int] Raises ...
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def not_(arg): """:yaql:operator not Returns true if arg evaluates to false. Otherwise returns false. :signature: not arg :arg arg: value to be converted :argType arg: any :returnType: boolean .. code:: yaql> not true false yaql> not {} true yaql> ...
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from typing import Sequence from typing import Mapping def parse_cell_methods(cell_methods: Sequence[Mapping[str, str]]) -> str: """Parse cell methods as YAML reads them into a string.""" methods = [] for cell_method in cell_methods: methods.append("".join([f"{dim}: {meth}" for dim, meth in cell_m...
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def get_flag_variables(ds): """ Returns a list of variables that are defined as flag variables :param netCDF4.Dataset ds: An open netCDF4 Dataset """ flag_variables = [] for name, ncvar in ds.variables.items(): standard_name = getattr(ncvar, "standard_name", None) if isinstance(...
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import re def filter_abstract(s): """ Some abstracts have metadata tags that should not be displayed in public views. If present, only the text between {AbstractBegin} and {AbstractEnd} should be displayed. """ match = re.search('\{AbstractBegin\}([\w\s\W\S]*)\{AbstractEnd\}', s) if match...
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def extract_dict_to_ordered_key_lists(dictionary, data_name, key_name='times'): """ Create a dictionary with each element lists, one giving the "times" that the list element refers to and the others giving the data content that these times refer to - maintaining the order that the keys were originally in. ...
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def get_file(name): """ Helper function to get the text file contents """ # basedir = os.path.dirname(__file__) fn = "../testdata/%s" % (name,) return open(fn, "rb")
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import csv def read_from_csv(fn): """Read in the CSV file and return a list of (email, password) tuples""" users = [] csvfile = csv.reader(open(fn, "r")) for row in csvfile: if row[0] != "": users.append(row) return users
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def dtIsArticle(dt): """ Checks if determiner is indefinite or definite English article Argument: dt: the determiner name Return: True if determiner is indefinite or definite English article """ return dt.lower() in ['a', 'an', 'the']
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def _correct_folder(folder: str) -> str: """Ensures the folder follows a standard. Pathlib.parent in the root folder results in '.', whereas in other places we should use '' for the root folder. This function makes sure the root folder is always empty string. Args: folder: the folder to be corrected. ...
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def merge(incoming={}, output={}, overwrite=False): """ Resursively merges two dictionaries by taking inputs from the 'incoming' dictionary and overlaying them upon the 'output' dictionary. By default, no values in the resulting dictionary will be overwritten if present in both. Passing 'overwrite=True' will flip ...
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def get_synsets_lemmas(synsets): """ Take a list of synsets and returns a list of lemmas of all synsets """ lemmas = [] for synset in synsets: for lemma in synset.lemmas(): word = lemma.name() lemmas.append(word) return lemmas
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def create_hello_world_cpp() -> str: """ Fixture which returns a simple cpp hello world code """ return '#include<iostream>\n using namespace std; int main() {cout << "Hello World"; return 0;}'
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def format_field(center, field): """ Given a registration center and a field name, return the value of the field formatted to export in a CSV file. """ if field == 'center_type': return str(center.get_center_type_display()) # We never want to print "None", but "0" is okay. val = geta...
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def draw_point(r, g, b, m, n, grid): """Draws a point on the ppm grid Arguments --------- r, g, b -- RGB values for the point m, n -- row, column grid -- ppm grid being edited """ grid[m][n][0], grid[m][n][1], grid[m][n][2] = r, g, b return grid
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def _delta(i, j): """The Kronecker delta. Returns 1 if i == j, 0 otherwise.""" return int(i == j)
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def set_limits(output, plot_limits=[None, None], legend_limits=[None, None]): """Set plot and legend limits according to inputs. If limits are input and valid, return them. Otherwise, set them to the according limit in the data. If limits are input and out of order, reverse them. Args: output (...
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def expertises_to_comma_separated_string(queryset): """ Convert Expertise Queryset to comma-separated string :param queryset: Queryset of Expertise :return: Comma-separated string containing User Expertise """ string = ", ".join(str(obj.name) for obj in queryset) return string
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def filterMatches(matches, prevKeypoints, currKeypoints, threshold=30): """ This function discards matches between consecutive frames based on the distance between keypoints, which has to be below a certain threshold, and based on the fact whether their scale increases (keypoints that don't increase in scale...
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def pathappend(base, suffix, sep='/'): """Appends a path component to a base file path or URL. Like os.path.join, but always treats the suffix as a relative path. The separator can be any single character, by default `/`. >>> pathappend('http://example.com/api', 'test/') 'http://example.com/api/te...
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def unique(sequence): """ Returns the sequence without duplicate elements """ return list(set(sequence))
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import csv def load_jobs_list(filename): """Save the content of a csv file into a dictionaty. Args: filename (str): Name of the CSV to convert to a dictionary. Returns: jobs_list (dict): Dictionary with all the csv entries in it. """ jobs_list = {} with open(filename) as...
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import json def cfg_to_json_str(cfg): """ Get contents of config file as a json string """ return json.dumps(cfg, sort_keys=False, indent=4)
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def render_external_question(url, frame_height=0): """ Renders a URL within an ExternalQuestion XML object for use as a task. :param url: The URL of the task to display to Workers :param frame_height: Frame height to use for the Worker viewport, zero by default to use the whole window :return: The r...
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def keywords_polarity_week(df, cw_weeknum): """ Concatenate all tweets from `df` into a string by `cw_weeknum` and `polarity` . Parameters ---------- df : pandas.core.frame.DataFrame Dataframe containing tweets to extract from. cw_weeknum : int week number. Returns ----...
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def initialize_test_obj(fao=None, nffa=None, cfda_num="00.000", sub_tier_code="1234", sub_fund_agency_code=None, ppop_code="NY00000", ppop_zip4a=None, ppop_cd=None, le_zip5=None, le_zip4=None, record_type=2, award_mod_amend=None, fain=None, uri=None, cldi=None, awarding_o...
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def is_hex(s): """ Test if a string is a hexadecimal in string representation. :param s: The string to test. :return: True if hexadecimal, False if not. """ try: int(s, 16) return True except ValueError: return False
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def convert_to_fortran_string(string): """ converts some parameter strings to the format for the inpgen :param string: some string :returns: string in right format (extra "" if not already present) """ if not string.strip().startswith("\"") or \ not string.strip().endswith("\""): ...
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def splitem(query): """ Split a query into choices >>> splitem('dog, cat') ['dog', 'cat'] Disregards trailing punctuation. >>> splitem('dogs, cats???') ['dogs', 'cats'] >>> splitem('cats!!!') ['cats'] Allow or >>> splitem('dogs, cats or prarie dogs?') ['dogs', 'cats',...
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def get_fw_setting(fw_conn, items_xpath): """Get FW Setting Info Args: fw_conn (PanDevice): A panos object for device items_xpath (str): The items xpath for the setting Returns: xml_data (Element): XML data from firewall """ base_xpath = ("/config/devices/entry[@name='local...
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def client_2(network): """Client fixture (second node).""" return network.clients[1]
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def strip_suffix(text, suffix): """ Cut a set of the last characters from a provided string :param text: Base string to cut :param suffix: String to remove if found at the end of text :return: text without the provided suffix """ if text is not None and text.endswith(suffix): return ...
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import configparser def config(section, file='database.ini'): """parses through a file and returns configuration settings for a given section in an INI file Args: section (str) - name of the section in the configuration INI file file (str) - file name of INI file Returns: ...
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import random def tire_entiers(entiers_disponibles: list[int], n: int) -> list[int]: """ Tire aléatoirement les entiers pour le jeu en piochant N entiers dans la liste fournies. Les valeurs retournées sont triées du plus petit au plus grand. """ return sorted(random.choices(entiers_disponi...
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def _get_contacts(all_atoms, ions, cutoff): """Identify the atoms closest to the ions and return them.""" contacts = {} for ion in ions: contacts[ion.resid] = [] for atom in all_atoms: dist = ( (ion.x - atom.x) ** 2 + (ion.y - atom.y) ** 2 ...
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def extract_list_item(source_data, item_pos): """Extract specific items from a list of lists. Extracts the item in item_pos from each list within a list of lists and returns a list with just the extracted items. Args: source_data (list): A list of lists. Returns: e...
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def feature_value_match_dict_from_column_names(column_names, prefix=None, suffix=None, col_name_to_feature_vals_delimiter='_match_for_____', feature_vals_delimiter='_'): """G...
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import typing def is_from_typing_module(cls): """ >>> is_from_typing_module(typing.Any) True >>> is_from_typing_module(typing.Callable[[],typing.IO[bytes]]) True >>> is_from_typing_module(str) False """ return cls.__module__ == typing.__name__
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def sensors_data(conn, SENSORS_DATA): """ Insert sensors data into the SENSORS_DATA table :param conn: :param project: :return: insert data id """ sql = ''' INSERT INTO SENSORS_DATA(DEVICE_NAME,DATE,AMBIENT_TEMP,GROUND_TEMP,AIR_QUALITY,AIR_PRESSURE,HUMIDITY,WIND_DIRECTION,WIND_SPEED,WIND_GUS...
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