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def _reset() -> str: """Internal function returning ANSI escape sequence to reset all colors and boldness""" return '\033[0m'
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def create_tf(b, a): """ Creates a transfer function given vectors of values for the numerator, b[i], and denominator, a[i], b[0]*s**n + b[1]*s**(n-1) + ... + b[n] f(s) = -------------------------------------- a[0]*s**m + a[1]*s**(m-1) + ... + a[m] Arguments: b...
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def get_playlist(target_playlist, playlists): """ Searches for a playlist named `target_playlist` in the list `playlists`. :param target_playlist: :param playlists: :return: """ for playlist in playlists: if playlist['name'] == target_playlist: return playlist
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import secrets def _create_salt() -> str: """Create random salt.""" salt = secrets.token_hex(8) return salt
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def uniq_vals_incommon(list1, list2): """find unique values in common between two lists""" return list(set([x for x in list1 if x in list2]))
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def _merge_jsonb_objects(column: str) -> str: """ This function returns SQL that merges the top-level keys of the a JSONB column, taking the newest available non-null value. """ return f"""{column} = COALESCE( jsonb_strip_nulls(old.{column}) || jsonb_strip_nulls(EXCLUDED.{col...
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def should_perform_aggr_query(hesabi_body): """ this function specifies if we should go for agg field from sources or not :param hesabi_body: :return: """ if "agg_field" in hesabi_body: return True return False
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import torch def rotate_vec_by_axisangle(vec, aa_vec): """ This function rotates a 3D vector @vec by the direction and angle represented by @aa_vec. See https://stackoverflow.com/questions/32485772/how-do-axis-angle-rotation-vectors-work-and-how-do-they-compare-to-rotation-matr for more information. ...
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import torch def batch_pdist(X, Y, device=None): """ Computes all the pairwise distances. Parameters ---------- X : torch.tensor shape [c, n, d] Y : torch.tensor shape [c, m, d] or [1, m, d] Returns ------- torch.tensor output has shape [c, n, m]. The entry at...
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def subset(d, keys=()): """ Return a copy of dict over a subset of keys and values. """ return dict([(k, d[k]) for k in keys if k in d])
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def get_physnets_for_node(task): """Return the set of physical networks for a node. Returns the set of physical networks associated with a node's ports. The physical network None is excluded from the set. :param task: a TaskManager instance :returns: A set of physical networks. """ return ...
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def is_item_visible(item): """Returns true if the item is visible.""" for attr in ['is_deleted', 'is_archived', 'in_history', 'checked']: if item[attr] == 1: return False return True
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from datetime import datetime import pytz def _datetime_from_query(ts): """Converts the above arbitrary format back to a datetime object, complete with a time zone. `ts` should be a string, straight out of the query. Returns None if `ts` is missing or junk. """ if not ts: return None ...
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def PEM_split(cert_pem): """Split a certificate / certificate chain in PEM format into multiple PEM certificates. This is useful for extracting the last / root PEM cert in a chain for example. Will return a list of strings with each string being an individual PEM certificate (including its '-----BEGIN...
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def _round(value: float, places=2) -> str: """Rounds a value to the given number of decimal places.""" fstring = "{:.%gg}" % places # pylint: disable=consider-using-f-string return fstring.format(value)
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import inspect def find_people(person_module): """ Returns the functions prefixed with `get` from a module. """ functions = inspect.getmembers(person_module, predicate=inspect.isfunction) people_functions = filter(lambda x: x[0].startswith('get'), functions) persons = [] for _, function i...
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import csv def parse_csv(path): """Read in the way that dict[algorithm][world_size] --> list""" results = dict() with open(path) as csvfile: iterator = csv.reader(csvfile, delimiter=',') for row in iterator: print(row) algorithm, world_size, object_size, mean, std =...
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def get_any_index(lst, *values): """Returns the index of (the first of) a set of values in lst.""" for value in values: try: return lst.index(value) except ValueError: pass
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def prompt_string(msg): """Prompts the user for a value. @param msg: Message to display to user. @return: User's input or None. """ return input("\n%s: " % msg).strip(" \n") or None
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from typing import List def rgb_to_cielab(rgb: List[int]) -> List[int]: """ Convert from RGB to CIELab color space. Arguments: rgb: Iterable of length 3 with integer values between 0 and 255 Returns: A list with 3 integer scaled values of CIELab. References: - https://gi...
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def bytes_to_size_string(b: int) -> str: """Convert a number in bytes to a sensible unit.""" kb = 1024 mb = kb * 1024 gb = mb * 1024 tb = gb * 1024 if b > tb: return "%0.2fTiB" % (b / float(tb)) if b > gb: return "%0.2fGiB" % (b / float(gb)) if b > mb: return "%...
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import colorsys def hsv_to_rgb(hsv): """ Converts the given HSV tuple to RGB values :param hsv: The input HSV tuple ((h, s, v) ranging from 0.0 to 1.0) :return: The converted RGB tuple ((r, g, b) ranging from 0 to 255) """ return tuple(round(i * 255) for i in colorsys.hsv_to_rgb(hsv[0], hsv[1]...
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def sylvester(number: int) -> int: """ :param number: nth number to calculate in the sequence :return: the nth number in Sylvester's sequence >>> sylvester(8) 113423713055421844361000443 >>> sylvester(-1) Traceback (most recent call last): ... ValueError: The input value of [n=-1] ...
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import torch def get_spacer_tensor(template: torch.Tensor, length: int) -> torch.Tensor: """Get a tensor of zeros.""" shape = template.shape[:-1] + (length,) return torch.zeros( shape, dtype=torch.float32, device=template.device, )
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from typing import Any def size(obj: Any) -> int: """Return the length of an array or string.""" try: return len(obj) except TypeError: return 0
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def slicify(slc, dim): """ Force a slice to have defined start, stop, and step from a known dim. Start and stop will always be positive. Step may be negative. There is an exception where a negative step overflows the stop needs to have the default value set to -1. This is the only case of a negativ...
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def pad_floats(n): """ Formats numbers to two decimal places :param n: number to be formatted :return: formatted number """ return float("{:.2f}".format(n))
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def flatten(x): """ flatten(): turns nested list or tuple into single list """ result = [] if isinstance(x, str): result = x else: for el in x: if hasattr(el, "__iter__") and not isinstance(el, str): result.extend(flatten(el)) else: ...
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import time def validate_counter(counter): """ Validates a counter ensuring it's in a sliding window. Window is +/- 12 hours (43200 seconds) """ currentTime = int(time.time()) return (currentTime-43200) <= counter <= (currentTime+43200)
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def is_list_type(value): """ 判断value是否列表类型,兼容python2、python3 :param value: 输入值 :type value: any :returns: 判断结果 :rtype: bool """ return isinstance(value, (list, set, tuple))
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def _target_ads_in_campaign_to_user_list( client, customer_id, campaign_id, user_list_resource_name ): """Creates a campaign criterion that targets a user list with a campaign. Args: client: an initialized GoogleAdsClient instance. customer_id: a str client customer ID used to create an cam...
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import re def get_text_refs(url): """Return the parsed out text reference dict from an URL.""" text_refs = {'URL': url} match = re.match(r'https://www.ncbi.nlm.nih.gov/pubmed/(\d+)', url) if match: text_refs['PMID'] = match.groups()[0] match = re.match(r'https://www.ncbi.nlm.nih.gov/pmc/ar...
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def remove_invariant_features(dataset): """Returns a new dataset with all invariant features removed. """ return dataset[:, dataset.samples.std(axis=0).nonzero()[0]]
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def ravel_multiple_indices(ixs, shape): """ "Flattens" multiple 2D input indices into indices on the flattened matrix, similar to np.ravel_multi_index. Does the same as ravel_index but for multiple indices at once. Parameters ---------- ixs: array of ints shape (n, 2) The array of n indi...
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def export_url(url): """ Get the 'Special:Export' XML version url of an article """ page = url.split("/")[-1] return ("http://en.wikinews.org/w/index.php?title=Special:Export" "&action=submit&pages={}".format(page))
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def delta_time(ind): """Create a function to return the delta time from a product-specific block.""" def inner(seq): return seq[ind] >> 5 return inner
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import re def represents_float(text): """ This function return True if the given param (string or float) represents a float :Example: >>> represents_float("1.0") True >>> represents_float("1") False >>> represents_float("a") False >>> repres...
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def get_comments(events, comments=None): """ Pick comments and pull-request review comments out of a list of events. Args: events: a list of (event_type str, event_body dict, timestamp). comments_prev: the previous output of this function. Returns: comments: a list of dict(author...
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def applyReplacements(symbol_list): """ Apply the rules associated with each symbol to the symbols in `symbol_list`. Symbols with no defined rule are returned as-is. The elements of `symbol_list` must be subclasses of Symbol. Returns a tuple of (`replaced`, `new_symbol_list`) where `replaced` is ...
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def errorMessage(err, location = None): """ Generate a standard error message. Parameters ---------- err : str The error message. location : str, optional Where the error happens. E.g. CTL.funcs.funcs.errorMessage Returns ------- str The generated error ...
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def _NormalizePath(path): """Returns the normalized path of the given one. Normalization include: * Convert '\\' to '/' * Convert '\\\\' to '/' * Resolve '../' and './' Example: '..\\a/../b/./c/test.cc' --> 'b/c/test.cc' """ path = path.replace('\\', '/') path = path.replace('//', '/') filtered...
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def arcsecs2radians (seconds:float) ->float: """convert arcseconds to radians. """ radians = seconds * 0.000004848 return radians
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def coerce_to_list(val): """ For parameters that can take either a single string or a list of strings, this function will ensure that the result is a list containing the passed values. """ if val: if not isinstance(val, (list, tuple)): val = [val] else: val = [] ...
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def xyxy2xywh(bbox_xyxy): """ Args: bbox_xyxy: [xim, yxim, xmax, ymax] Ruturns: bbox_xywh: [x, y, w, h] """ xim, yxim, xmax, ymax = bbox_xyxy return [xim, yxim, xmax-xim, ymax-yxim]
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def train_test_split(data, test_len): """ Train/ Test split :param data: (np.array) Sequence to split :param test_len: (int) length of test sequence :return: np.array, np.array: train sequence, test sequence """ # print("[DataProcessor] Train/Test split") if test_len == 0: return...
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def check_numeric_type(array): """ Check if an array contains only numeric values. Accepted formats: int64, int32, float64, float32 Args: array: array-like, shape=(n_samples, n_features) Returns: boolean, True if the array is one of accepted types. """ is_numeric = array.dtype...
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def exponentiate(base, exp, p): """ uses the square and multiply algorithm to get (base^exp)%p :param base: base of the exponentiation :param exp: power that the base is being raised to :param p: prime modulus :returns: (base^exp) mod p """ e = "{0:b}".format(exp) # bitstring of...
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def get_stack_name(stack_formatted): """ Get the stack name (eg. HDP) from formatted string that may contain stack version (eg. HDP-2.6.1.0-123) """ if stack_formatted is None: return None if '-' not in stack_formatted: return stack_formatted return stack_formatted.split('-')[0]
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import copy def nonuniform_mutation(random, candidate, args): """Return the mutants produced by nonuniform mutation on the candidates. The function performs nonuniform mutation as specified in (Michalewicz, "Genetic Algorithms + Data Structures = Evolution Programs," Springer, 1996). This function al...
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def get_outbound_layers(layer): """Return outbound layers. Parameters ---------- layer: Keras.layers A Keras layer. Returns ------- : list[Keras.layers] List of outbound layers. """ try: # noinspection PyProtectedMember outbound_nodes = layer._out...
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def calc_gb_size(num_rows, row_size): """Calculate the size of table in GB given row size and number of rows in bytes""" total_byte = row_size * num_rows total_gb = ((total_byte / 1024) / 1024) / 1024 return total_gb
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def maybe_get(obj, i): """ :param obj: object :param i: the index :return: the i-th item if the `obj` instantiates the __getitem__ function """ return obj[i] if hasattr(obj, "__getitem__") else obj
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def get_index_name(app_id, namespace, name): """ Gets the internal index name. Args: app_id: A str, the application identifier. namespace: A str, the application namespace. name: A str, the index name. Returns: A str, the internal name of the index. """ return '{}_{}_{}'.format(app_id, namesp...
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def pad_lines_after_first(prefix, s): """Apply a prefix to each line in s after the first.""" return ('\n' + prefix).join(s.splitlines())
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import copy def merge_dict(original_data, new_data): """ Merge two dictionaries. Merge the content of a `new` dictionary into another, `original` dictionary. A new dictionary with the merged content is created. Values are preserved and a ValueError is raised if incompatible content is encounte...
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def quote(text): """Change " to \\".""" try: return text.replace('"', '\\"') except TypeError: return text
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def check_return_code(error_message, expected_code=0): """Create a callable to verify the return code of a response. To be used with the :meth:`run` function. The callable will raise an :class:`AssertionError` if the return code of the response is different from the given one. Args: error_...
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import base64 def encode(data: bytes) -> str: """Encode data to base64url (RFC 4648) text :param data: Raw data :returns: Base64-encoded data :raises TypeError: if `data` is not a bytes instance >>> encode(b'test') 'dGVzdA' """ if not isinstance(data, bytes): raise TypeError...
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import base64 import binascii def _decode_telegram_base64(string): """ Decodes a url-safe base64-encoded string into its bytes by first adding the stripped necessary padding characters. This is the way Telegram shares binary data as strings, such as Bot API-style file IDs or invite links. Re...
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def to_product(product_tuple): """Parse a tuple into valid 'Product' object. Args: product_tuple: Tuple containing StockCode, Description, Quantity and UnitPrice. Returns: Product (dictionary). """ return { 'id': str(product_tuple[0]), 'description': str(product_tup...
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from typing import List from typing import Union import hashlib def integer_seed(objs: List[Union[str, int]]) -> int: """Reproducibly and readably generate a seed value, from strings and integers. """ assert isinstance(objs, list), isinstance(objs, tuple) h = hashlib.sha256() for obj in objs: if isinsta...
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import re def _remove_redundant_parts(word: str) -> str: """ This function removes redundant parts in a given Neo-Assyrian word in ORACC. :param word: A given word :return: The given word after removing redundant parts """ word = re.sub(r"lu₂[a-z]*", "lu₂", word) return re.sub(r"@?v|\\[a-...
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import hashlib def partition(example, num_buckets): """ Partition examples into multiple buckets """ def determine_hash(input_bytes): m = hashlib.blake2b(input_bytes, digest_size=4) address = 0 for i, b in enumerate(m.digest()): address += b * (2 ** (i * 8)) return address address = deter...
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import math def acos(theNumber): """Returns math.acos(theNumber).""" return math.acos(theNumber)
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def gene_synonyms(ncrna): """ Find all gene synonyms, if they exist. """ gene = ncrna.get("gene", {}) synonyms = gene.get("synonyms", []) if "symbol" in gene: synonyms.append(gene["symbol"]) return synonyms
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def ms2min_sec(ms: int): """Convert milliseconds to 'minutes:seconds'.""" min_sec = f'{int(ms / 60000):02d}:{int(ms / 1000) % 60:02d}' return min_sec
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from datetime import datetime def date2jd(date): """ Convert datetime object to JD" Args: date (datetime.datetime): date to convert Returns: float: Julian date """ jd_td = date - datetime(2000, 1, 1, 12, 0, 0) jd = 2451545.0 + jd_td.days + jd_td.seconds/86400.0 retur...
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def jaccard(r_tokens: list, s_tokens: list) -> float: """Computes jaccard similarity. JAC(r, s) = |r ∩ s| / |r ∪ s| Parameters ---------- r_tokens : list First token list. s_tokens : list Second token list. Returns ------- Jaccard similarity of r and s. """ ...
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def rank_zero_method(f): """Decorator that executes f only if the passed experiment has rank 0. This is used with distributed data parallel to train on multiple nodes.""" def inner(self, experiment): if experiment.rank != 0: return return f(self, experiment) return inner
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def extract_files_to_lint(file_diffs): """Grab only files out of a list of FileDiffs that have a ACMRT status.""" if not file_diffs: return [] lint_files = [f.name for f in file_diffs if f.status in b'ACMRT'] return lint_files
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from typing import Mapping from typing import Any from typing import Iterable from typing import Dict import itertools def _combinations_of_selections(selections: Mapping[str, Any]) -> Iterable[Dict[str, Any]]: """Find all permutations of combinations of selections. This is useful for passing the selections ...
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def cropFrequencies(frequencies, Z, freqmin=0, freqmax=None): """ Trim out all data points below the X-axis Parameters ---------- frequencies : np.ndarray Array of frequencies Z : np.ndarray of complex numbers Array of complex impedances freqmin : float Minimum freq...
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from typing import Union def is_inet_address(addr: Union[tuple[str, int], str]) -> bool: """Check whether addr is of type tuple[str, int].""" return ( isinstance(addr, tuple) and len(addr) == 2 and isinstance(addr[0], str) and isinstance(addr[1], int) )
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from typing import Counter def get_word_freqs(captions): """ Calculates word frequencies :param captions: list of captions """ word_freqs = Counter() for caption in captions: word_freqs.update(list(filter(None, caption.split(' ')))) return word_freqs
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def _is_windows(repository_ctx): """Returns true if the host OS is Windows.""" return repository_ctx.os.name.startswith("windows")
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def is_engine_in_list(engines_list, engine_class): """Checks if engine in the list :param list engines_list: list of engines :param engine_class: engine class :returns: True if engine in the list False if engine not in the list """ engines = filter( lambda engine: isinsta...
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import hashlib def CalculateHash(file_path): """Calculates and returns the hash of the file at file_path.""" sha1 = hashlib.sha1() with open(file_path, 'rb') as f: while True: # Read in 1mb chunks, so it doesn't all have to be loaded into memory. chunk = f.read(1024 * 1024) if not chunk: ...
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import torch def _normalize_images(images): """ Given a tensor of images, uses the torchvision normalization method to convert floating point data to integers. See reference at: https://pytorch.org/docs/stable/_modules/torchvision/utils.html#save_image The function uses the normalization from mak...
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def getGrayDiff(img,currentPoint,tmpPoint): """This function does gray difference between two points. Parameters ---------- img : numpy array Array containing the image data. currentPoint : numpy array Array containing the position of one seed point. tmpPoint : numpy array ...
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def gen_explicit_map_nn_maxpool2d(params_pt, args_pt): """ Generate explicit_map for nn.MaxPool2d. Args: params_pt (dict): Params for APIPt. args_pt (dict): Args for APIPt. Returns: dict, map between frames. """ if 'padding' in args_pt: padding = args_pt['paddin...
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def wrap(text, line_length): """Wrap a string to a specified line length. Args: text: The string to wrap. line_length: The line length in characters. Returns: A wrapped string. Raises: ValueError: If line_length is not positive. """ # DON'T DO THIS: # assert l...
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def _imag_1d_func(x, func): """Return imag part of a 1d function.""" return func(x).imag
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def Dist(p1,p2): """ Euclidean distance between 2 points """ x1, y1 = p1 x2, y2 = p2 return (((x1-x2)*(x1-x2)) + ((y1-y2)*(y1-y2)))**0.5
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def cross(a, b): """Cross product between a 3-vector or a 2-vector""" assert len(a) == len(b), 'Vector dimensions should be equal' if len(a) == 3: return ( a[1] * b[2] - a[2] * b[1], a[2] * b[0] - a[0] * b[2], a[0] * b[1] - a[1] * b[0]) elif len(a) == 2: ...
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import itertools def nth(iterable, n): """Returns the nth item from iterable.""" try: return iterable[n] except TypeError: try: return next(itertools.islice(iterable, n, None)) except StopIteration: raise IndexError('index out of range')
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def rgb_xyz(rgb): """ Convert tuple from the sRGB color space to the CIE XYZ color space. The XYZ output is determined using D65 illuminate with a 2° observer angle. https://en.wikipedia.org/wiki/Illuminant_D65 sRGB (standard Red Green Blue): https://en.wikipedia.org/wiki/SRGB CIE XYZ: https://en.wikipedia.org/...
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def identity_transform(memory, image_key): """Simple function to return the image at "image_key" in the memory. Args: memory (dictionnary): memory dict. image_key (string): image key. Returns: np.array: the image. """ return memory[image_key]
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def strip_byte_order_mark(text): """Return text with byte order mark (BOM) removed.""" try: return text.encode('utf-8').decode('utf-8-sig') except UnicodeError: return text
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def get_blockname_from_block_id(lookup_dict: dict, block_id: str) -> str: """ Pycifrw makes datablock names all lower case. When I make up a pd+block_id from a dataname, sometimes the user has a case-dependent reference somewhere in their CIF, and so I can't find the datablock. This looks in my lookup dicti...
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def sub_print(stream_id, data, state, log): """!@brief Default stream data callback. Prints data. @param stream_id data stream id @param data data to be printed @param log logging object """ log.info("[{}]: {}".format(stream_id, data)) return state
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def flatten(categories): """Flatten incoming categories list >>> flatten({'name':'test'}) [{'name': 'test', 'parent': None}] >>> flatten({'name': 'Category 8', 'children': [{'name': 'Category 22'}, {'name': 'Category 23'}]}) [{'name': 'Category 8', 'parent': None}, {'name': 'Category 22', 'parent':...
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def lca(node1, node2): """ Returns least common ancestor of {node1, node2}. """ nodes = sorted( [(node1.uid, node1), (node2.uid, node2)], key=lambda x: -x[0] ) while nodes[0][0] != nodes[1][0]: lower_node = nodes[1][1] par = lower_node.parent assert par is not No...
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import bisect def find_ge(a, x): """Find leftmost item greater than or equal to x""" i = bisect.bisect_left(a, x) if i != len(a): return i raise ValueError
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def sort_python_measurement_files(folder): """Sort a folder of measurement data by order of measurements. This doesn't strictly preserve measurement order but rather groups files by measurement type in the experiment order. Parameters ---------- folder : pathlib.Path Folder of data to ...
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def identify_technique(target, obstype, slit, grating, wavmode, roi): """Identify whether is Imaging or Spectroscopic data Args: target (str): Target name as in the keyword `OBJECT` this is useful in Automated aquisition mode, such as AEON. obstype (str): Observation type as in `OBSTYPE...
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def c200_to_v200(c200=1., rs=1.0, H0=73): """get C200 H0 in km/s/Mpc rs in Mpc c200 is dimensionless Return V in km/s """ return 10. * c200 * rs * H0
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def gen_podcast_episode_id(podcast_episode_obj): """ Generates the Elasticsearch document id for a Podcast Args: podcast_episode_obj (PodcastEpisode): The PodcastEpisode object Returns: str: The Elasticsearch document id for this object """ return "podcast_ep_{}".format(podcast...
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import pathlib def get_full_img_path(img_root_path, csv_path): """Merge csv root path and image name.""" root_dir = pathlib.Path(csv_path).parent img_path = root_dir / pathlib.Path(img_root_path) return str(img_path)
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def find_identifier(qualifiers): """Finds an identifier from a dictionary of feature qualifiers. This function selects for the following fields in decreasing order: protein_id, locus_tag, ID and Gene. This should cover most cases where CDS features do not have protein ID's. Args: qualifier...
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def find_user(user_name, source): """ Search for a user by name on the given object """ name = user_name.lower() for user in source.users: if user.nickname.lower() == name: return user return None
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