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def trace(M): """ Compute the trace of a sparse matrix """ return sum(M.diagonal())
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import calendar def get_month_name(i): """Return the name of a month from its one-based index .""" return calendar.month_name[i]
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def heronStep(y, x): """Perform one step of Heron's method for sqrt(y) with guess x.""" return 0.5*(x + y/x)
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def build_message(adds_table, adds_table_html, deletes_table, deletes_table_html, company_name, email_adds=True, email_deletes=True): """ Build the email message including added and removed jobs. :param adds_table: table of added jobs created from create_text_table :param adds_table_h...
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import re def parse_schedule(schedule): """ Given a list of sorted scheduling information, produce a list of the guard sleep schedules. :param schedule: a list of sorted strings describing scheduling information :return: a dictionary from guard ID to array of length 60 indicating how many times the gu...
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def _path_to_name(path, prefix = None, suffix = None): """Converts a path string to a name suitable for use as a label name. Args: path: A path as a `string`. prefix: Optional. A string which will be prefixed to the namified path with an underscore separating the prefix. ...
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def filter_repr(s): """Use repr(...) on the given string.""" return repr(s)
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def stringSizeToInt(stringSize): """ Convert suffixes like Mbp Kpb to the int """ suffixes = {'G': 1000000000, 'M': 1000000, 'K': 1000} if stringSize[-1] in suffixes: return int(stringSize[:-1]) * suffixes[stringSize[-1]] else: return int(stringSize)
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def bottom_up_coin_change(amount, denoms, denoms_length): """ Parameters ---------- amount : int Target amount denoms : list<int> denominations denoms_length : int number of unique denominations Returns ------- int count of ways >>> bottom_up_co...
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def df_drop(df, columns, axis=1): """Drop columns from a dataframe""" columns = [c for c in columns if c is not None] return df.drop(columns, axis=axis)
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import math def NChooseK(N, K): """ Calculate (N choose K) :param N: int, the size of the overall set :param K: int, size of the combinations chosen from set :return: combos, int, number of combinations possible """ numer = math.factorial(N) denom = math.factorial(K) * math.factorial(N - K) combos = num...
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import numbers def dynamic_slicing(array, slices, assign=None): """Dynamic slicing of an array with arbitrary number of dimensions. Slices must match number of dimensions. A single slice can either be None, i, [i, None], [None, j] or [i, j]. None is equal to ':'. i/j is the slice index and can be negativ...
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def Mc_m1_m2(m1, m2): """ Computes the chirp mass (Mc) from the component masses input: m1, m2 output: Mc """ Mc = (m1*m2)**(3./5.)/(m1+m2)**(1./5.) return Mc
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def _lightning_get_all_attr_holders(model, attribute): """ Special attribute finding for Lightning. Gets all of the objects or dicts that holds attribute. Checks for attribute in model namespace, the old hparams namespace/dict, and the datamodule. """ trainer = getattr(model, 'trainer', None) h...
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def intify_floats(d): """turn eg. 0.66 into 66""" return int(float(d)*100)
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def parse_image_id(image_ref): """Return the image id from a given image ref.""" return image_ref.rsplit('/')[-1]
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import requests import shutil def clearbit_download_logo(*, company_url: str, file_path: str, size: int = 24, fmt: str = "jpg") -> bool: """Download a company logo from the Clearbit Logo API tool: https://clearbit.com/logo. :param company_url: the URL of the company domain + suffix e.g. spotify.com :param...
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def get_dataset_up_to_peak(dataset, peak_temp): """Get only the data points before the peak temperature.""" dataset_up_to_peak = [] for row in dataset: if float(row[4]) < peak_temp: dataset_up_to_peak.append(row) return dataset_up_to_peak
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def elapsed_time_in_minutes(number_of_layers, elapsed_bake_time): """ Return time elapsed. This function takes two inputs - number of layers and elapsed bake time and calculates the combined time spend on preparing the layers and baking. """ return elapsed_bake_time + (number_of_layers * 2)
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import torch def precision(cm): """ Precision: of all predicted positive samples, what fraction was correct? precision = TP / (TP + FP) Args: cm: Binary confusion matrix like this: | TN | FP | | FN | TP | Returns: scalar precision score """ rv...
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import math def eucledian_between_point(point1: tuple, point2: tuple): """ Return eucledian distance between two points. Parameters ---------- point1 : tuple (x,y) coordinate pair. point2 : tuple (x,y) coordinate pair. Returns ------- Eucledian distance between b...
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import json def FormatJson(config): """Formats JSON for output or printing. Args: config: Dictionary to be output """ return json.dumps(config, sort_keys=True, indent=2, separators=(',', ': '))
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import math import textwrap def format_sysinfo(headers=(), notes=(), footnotes=(), width=80, indent="", column_separator=" ", note_prefix="=> "): """Format sysinfo headers, notes and footnotes to be displayed. This function will format headers notes and footnotes in a way that looks ...
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def clean_single_quotes(text: str) -> str: """Excapes all single quotes (') in text into a double single quote('')""" return text.replace("'", "''")
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def intadd(num1: int, num2: int) -> int: """Adds two numbers, assuming they're both positive integers. Parameters ---------- num1, num2 : int Positive integers Returns ------- int Resulting positive integer Raises ------ ValueError If either number is n...
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def _VerifyProperty(modelclass, attr_name): """Return a property if set on a model class, otherwise raises an exception. Args: modelclass: A subclass of EndpointsModel which has a _GetEndpointsProperty method. attr_name: String; the name of the property. Returns: The property set at the attr...
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def prob_drunk_given_positive(prob_drunk_prior=0.001, prob_positive=0.08,prob_positive_drunk=1.0): """ Returns the Bayesian probability that a person is drunk, given a positive result in a breathalyzer test Arguments: prob_drunk_prior (float, optional, default: 0.001): Probability that a person in the prior popu...
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def move(cycle): """ Push last element of cycle to first position :param cycle: One cycle of permutation in cycles notation :type cycle: list :return: Returns moved cycle :rtype: list """ cycle.insert(0, cycle[-1]) cycle.pop(-1) return cycle
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def assemble_output(get_msg): """assemble stdout/err from an execution""" stdout = '' stderr = '' while True: msg = get_msg(timeout=1) msg_type = msg['msg_type'] content = msg['content'] if msg_type == 'status' and content['execution_state'] == 'idle': # idle ...
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def shorten(s, length): """ Shorten `s` to `length` by appending it with "...". If `s` is small, return the same string >>> shorten("very long string", 9) "very l..." >>> shorten("small", 10) "small" """ if len(s) > length: return s[:length - 3] + '...' else: re...
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def remove_from_list(element, iterable): """ Return list without given element from that list. Conversely to built-in methods it is fruitful function. Parameters ------- element: object Element to be removed from the list. iterable: list, tuple, set Iter...
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def card_adder(decklist, card): """ Given a decklist and a card name, returns the decklist with the supplied card added in. Parameters: decklist: list of str Decklist represented by a list of strings of card names. card: str Card name to be added to the deck. :ret...
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import re def parse_case_camel_to_snake(camel): """ Convert a string from CamelCase to snake_case. :param str camel: The CamelCase string to convert. :return: The snake_case version of string. :rtype: str """ # requirements = re return re.sub('((?<=[a-z0-9])[A-Z]|(?!^)[A-Z](?=[a-z]))', r'_\1', camel).lower()
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def to_path_list(key_list): """ Turns a list of s3.boto.path.Key objects into a list of strings representing paths. Args: key_list(List(s3.boto.path.Key)) Returns: List(basestring) """ new_list = [key.name for key in key_list] return new_list
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from pathlib import Path def find_js(js): """Locate the JavaScript file to update.""" if js is None: js = Path(__file__).resolve().parent / 'lib_wc.js' return js
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def _process_results(results, keep_N, correlation_threshold=0, thresholds=None): """ Given the results of the CPA, output an array of arrays sorted by most likely candidate first and an array of likely incorrect bytes """ possible_keys = [] likely_wrong = set() # plot(results[0]) for i...
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def is_lambda(v): """Check if the passed variable is a lambda""" l = lambda: 0 return isinstance(v, type(l)) and v.__name__ == l.__name__
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import torch def tensor_to_gradcheck_var(tensor, dtype=torch.float64, requires_grad=True): """Makes input tensors gradcheck-compatible (i.e., float64, and requires_grad = True). """ assert torch.is_tensor(tensor), type(tensor) return tensor.requires_grad_(requires_grad).type(dtype)
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def _isLeft(P0, P1, P2): """ Test if point P2 is Left|On|Right of the line P0 to P1. returns: >0 for left, 0 for on, and <0 for right of the line. """ return (P1.x - P0.x)*(P2.y - P0.y) - (P2.x - P0.x)*(P1.y - P0.y)
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from datetime import datetime def time_now() -> str: """Return current UTC timestamp as string in ISO 8601 format""" return datetime.utcnow().isoformat(sep=' ', timespec='seconds')
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def extractConfigKey(config : dict, key): """ Extracts the value of the key from a dictionary if the key exists :param config: The configuration dictionary :param key: :return: Value of the dictionary if the key exists, else None """ assert isinstance(config, dict), "ValueError: config shoul...
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import re def collect_sentences_picsom(data): """Collect all sentences from MSR-VTT gt-* files. Captions are in the following format: Each line in text starts with a 4 digit number such as 0001 or 1234 etc, followed by captions separated by " # " , last caption is followed by EOL""" sentences = [] ...
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import io def get_description(location): """ Return description from podspec. https://guides.cocoapods.org/syntax/podspec.html#description description is in the form: spec.description = <<-DESC Computes the meaning of life. Features: ...
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import hashlib def get_hash(values): """Get a hash for a list of values.""" return hashlib.sha256(bytes(";".join(v if isinstance(v, str) else str(v) for v in values), "UTF-8")).hexdigest()
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def checkStrike(frame): """Checks if the frame is a strike. Checks if the frame is a strike by checking if the first element of frame equals to 10. Args: frame: A list with the two elements that indicate the pins hit by the player. Returns: A boolean value were true means that the fra...
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def set_session_var_stmt(**kwargs): """Returns proper sql statements for setting session settings. Namespaces all settings under `audit.*` namespace. e.g. .. code-block:: python set_session_var_stmt(foo='bar', baz='foobaz') # set local "audit.foo" = 'bar'; set local "audi...
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def update_qTable(q_table, state, action, reward, next_state_value, gamma_discount = 0.9, alpha = 0.5): """ Update the q_table based on observed rewards and maximum next state value Sutton's Book pseudocode: Q(S, A) <- Q(S, A) + [alpha * (reward + (gamma * maxValue(Q(S', A'))) - Q(S, A) ] Args: ...
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def github_api_url(project_url_parts): """ Return the appropriate Github API URL for the given parsed project_url. """ # If this is a Github URL, use api.github.com. Otherwise use /api/v3/ api_url = None if project_url_parts.netloc == 'github.com': api_url = project_url_parts._replace( ...
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import yaml def read_yaml(filename): """ Reads a yaml file from disk """ yaml_file = dict() with open(filename, 'r') as file: yaml_file = yaml.safe_load(file) return yaml_file
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def _IncreaseIndent(field, indent): """Increases indent of each new line in the given string.""" return field.replace('\n', '\n' + ' ' * indent)
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def maybe_id_ref(node): """Return the node id as a string if available, prefixed by space, otherwise an empty string. """ node_id = node.get('id') if node_id is not None: return " (id=%s)" % node_id return ""
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def __is_const_str(data: str) -> bool: """ Returns true if predicate is a constant string. Note: supports constant strings starting with a lowercase letter or a number """ # common case: string starts with a lowercase letter test_str = data[0].islower() # special case: string starts with a...
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def get_doc_str(fun): """Get the doc string for a function and return a default if none is found.""" if fun.__doc__: return '\n'.join([line.strip() for line in fun.__doc__.split('\n')]) else: return 'No documentation provided for %s()' % fun.__name__
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def get_table_by_id(soup, id): """ Gets all the td, excluding th, from a table with a given id in a given soup. :param soup: BeautifulSoup of all tags in which to search for id :param id: id of the desired <table> element from which to extract td :return: a 2D array of td """ # dont include ...
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def ext_from_url(url): """ Get the file extension from the given URL. Looks at the last part of the URL path, and returns the string after the last dot. :param url: the URL to the file whose extension is being determined :returns: the file extension or ``None`` """ file_name = url.split("/"...
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def get_bout_indices(activity_list): """ Takes a list, activity_list, and returns a list of tuples of the start/end indices in which sleeping bouts occurr. I.e. if two sleeping bouts occured, the first from index 5 to 20, and the second from index 30 to 40, this function will return [(5,20), (30...
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def emoji(text: str) -> str: """Returns relevant emoji for `text` Args: text (str): subject text Returns: str: emoji """ if text == "companions": return "👤" elif text == "materials" or "Wood" in text or text == "Bamboo Segment": return "🪵" elif "Chunk" in ...
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def _get_nodes(x, prefix=""): """ Args: x: a tree where internal nodes are dictionaries, and leaves are lists. prefix: not meant to be passed. The parent prefix of a label. e.g. given A -> B -> C, the parent prefix of C is 'A [sep] B'. sep: the separator to use between labels...
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def underscore_to_pascalcase(value): """Converts a string from underscore_case to PascalCase. Args: value: Source string value. Example - hello_world Returns: The string, converted to PascalCase. Example - hello_world -> HelloWorld """ if not value: return value def __CapWord(seq):...
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def find_named_module(module, query): """Helper function to find a named module. Returns a `nn.Module` or `None` Args: module (nn.Module): the root module query (str): the module name to find Returns: nn.Module or None """ return next((m for n, m in module.named_modules() ...
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def create_billpay_for(name): """ Create a json template based on supplied name :param: name - string :return: json """ return{ "name": name, "address": { "street": "My street", "city": "My city", "state": "My state", "zipCode": "...
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import torch def mc_kl_divergence(p, q, n_samples=1): """Computes monte-carlo estimate of KL divergence. n_samples: how many samples are used for the estimate.""" samples = [p.sample() for _ in range(n_samples)] return torch.stack([p.log_prob(x) - q.log_prob(x) for x in samples], dim=1).mean(dim=1)
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def check_flag(params, string, delete): """ Check if a parameter (string) was beeen declared in the line of commands (params) and return the associated value. If delete is true the related string will be deleted If string is not present, return None Input: params = list of parameters from ori...
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def add_links(graph, *args, **kwargs): """Add links between tasks in a :class:`graphcat.Graph`. This function calls-through to :meth:`graphcat.Graph.add_links`, and is provided for symmetry with :func:`add_task`. """ return graph.add_links(*args, **kwargs)
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import collections def get_convert_rgb_channels(channel_names): """Get first available RGB(A) group from channels info. ## Examples ``` # Ideal situation channels_info: [ "R", "G", "B", "A" } ``` Result will be `("R", "G", "B", "A")` ``` # Not ideal situation chan...
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def filter_rules(rules, nodeset_size_limit): """ Filter rules if their graphs exceed nodeset_size_limit. :param rules: Set of Rule objects :param nodeset_size_limit: Maximum size of graph node set :return: Filtered set of Rule objects """ if nodeset_size_limit > 0: # The maximum nod...
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import re def normalize_name(s: str) -> str: """Strong normalization for podcast names as they seem to have slight variations in the Webtrekk data. Lowers string and removes all characters except alphanumerics. Args: s (str): The string to normalize Returns: str: The normalized s...
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def make_smi_and_gyspum_params(gen_smiles_file, folder_path, gypsum_output_folder_path, max_variance, gypsum_thoroughness, min_ph, max_ph, pka_precision): """ Make an individual .smi file and parameter dictionary to sub...
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def mse(y_hat, y): """returns the mean squared error between the two inputs""" return ((y_hat - y) ** 2).mean()
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import random def simulate(initials, propensities, stoichiometry, duration): """ Run a simulation with given model. :param initials: List of initial population counts. :param propensities: List of functions that take population counts and give transition rates. :param stoichiometry: List of intege...
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def test_mat(default_rng): """The test array used for unit tests. Values are randomly sampled from standard Gaussian distribution. See the top-level package conftest.py for the default_rng fixture. Returns ------- numpy.ndarray Shape (10, 3, 10), entries sampled from standard normal di...
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import re def comment_magic_commands(code): """Comment the magic commands in a code block.""" magic_pattern = re.compile(r'^(\s*%%?.*)$', re.MULTILINE) return re.sub(magic_pattern, r'#\1', code.strip())
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from typing import Dict def parse_arg(api_name: str, s: str) -> Dict[str, str]: """parse an argument in following formats: 1. typename name 2. typename name = default_value """ typename, rest = [item.strip() for item in s.split(" ", 1)] assert len( typename ) > 0, f"The arg typenam...
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import torch def get_xy_map(out_h, out_w): """ created coordinate map with the given shape. Returns map of shape (out_h, out_w, 2) """ y_map = torch.arange(out_h).float() / (out_h - 1) x_map = torch.arange(out_w).float() / (out_w - 1) x_map = x_map.expand(out_h, *x_map.shape) y_map = y...
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def constant_force(value): """ Returns a constant force function Parameters ---------- value: float value of constant force Returns ------- f: callable function f(t) """ def f(t): return value return f
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def count_nonsyn(mvf_file): """ count number of nonsynonymous variants from mvf file """ ns_num = 0 for line in mvf_file: line = line.rstrip() if ':' not in line: continue codon = line.split(' ')[1] if len(codon) > 1: ns_num += 1 return ns_num
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import types def get_xref_type(obj): """ Infer the Sphinx type a cross reference to ``obj`` should have. For example, ``:py:class`FooBar`` has the type ``py:class``. """ if isinstance(obj, type): if issubclass(obj, BaseException): t = 'exc' else: t = 'class...
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def flag(state, name, value: bool = True): """Set the state variable as a flag (boolean value)""" state.vars[name] = bool(value) return state
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def _get_index(column_name, headers): """Return the position in the headers list where column_name appears.""" i = 0 for header in headers: if header['name'] == column_name: return i i += 1 return -1
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import json def dict_to_json_string(dict): """ Converts a Python Dictionnary to a JSON string. (> str) """ try: return json.dumps(dict) except: return 'An error occured while converting your dict.'
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def _get_host_string(config): """ Take appropriate elements from a config dictionary and convert them into a string of format 'host:port'. :param dict config: Application configuration dictionary, including ES config. """ host = config["es-configuration"]["es-host"] port = config["es-configu...
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def text_overflow(keyword): """Validation for the ``text-overflow`` property.""" return keyword in ('clip', 'ellipsis')
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def make_sheet(wb, sheet_name, idx=None): """Create the sheet if it doesn't already exist otherwise remove it and recreate it""" if sheet_name in wb.sheetnames: wb.remove(wb[sheet_name]) return wb.create_sheet(sheet_name, index=idx)
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def space_check(board, position): """Check if space is freely available""" return board[position] == ' '
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def check_for_conversation_existence(alternate_return_value): """A decorator that checks for a conversations existence based on the inner functions given client_host and client_port. If it does exist, then run the original function, otherwise return the alternate return value. Three arguments are assum...
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from typing import Dict def merge_natspec(devdoc: Dict, userdoc: Dict) -> Dict: """ Merge devdoc and userdoc compiler output to a single dict. Arguments --------- devdoc: dict Devdoc compiler output. userdoc : dict Userdoc compiler output. Returns ------- dict ...
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def question_save_feedback(question_stored): """ Sends a immediate feedback, explaining, if the question was saved or not. :return: Feedback message """ if question_stored: response = "Your question has been saved. " \ "I will get back to you with an expert's answer. " \ ...
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def get_name(metadata): """Return the name of an object based on the dictionary metadata. By preference: long_name, short_name, 'Unnamed' """ name = metadata.get("long_name", None) if name is not None: return name name = metadata.get("short_name", None) if name is not None: retu...
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def _getcontextrange(context, config): """Return the range of the input context, including the file path. Return format: [filepath, line_start, line_end] """ file_i = context['_range']['begin']['file'] filepath = config['_files'][file_i] line_start = context['_range']['begin']['line'][0] ...
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def make_cache_key(question, docid): """Constructs a cache key using a fixed separator.""" return question + '###' + docid
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def output_F(results, contrast): """ This convenience function outputs the results of an Fcontrast from a regression """ return results.Fcontrast(contrast.matrix).F
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import re def is_only_numeric(s, *args, **kwargs): """ True if string `s` contains nothing but numbers (and whitespace) >>> is_only_numeric('Hi there') False >>> is_only_numeric('Number 9') False >>> is_only_numeric('42') True >>> is_only_numeric(' 4 3 2 1') True ""...
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import random def random_bytes(size: int) -> bytes: """ Random bytes. :param size: number of random bytes :return: size random bytes """ return bytes([random.randrange(0, 256) for _ in range(0, size)])
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import hashlib def derive_seed(privkey, other_pubkey, offer_info): """ Derive personal seed from a given offer info, counterparty pubkey, and own messaging key. This will be used to construct per-swap private keys and secrets.""" mykey = privkey.to_bytes(32,'big') obytes = offer_info.to_bytes() ...
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from typing import Dict def _get_char_frequency(data) -> Dict: """Returns a dictionary with the frequency of each character in the input. """ freq_map = {} for c in data: if c in freq_map: freq_map[c] += 1 else: freq_map[c] = 1 return freq_map
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def kalkulasi_kecepatan_akhir( kecepatan_awal: float, percepatan: float, waktu: float ) -> float: """ Menghitung kecepatan akhir dari suatu pergerakan dengan percepatan yang berbeda >>> kalkulasi_kecepatan_akhir(10, 2.4, 5) 22.0 >>> kalkulasi_kecepatan_akhir(10, 7.2, 1) 17.2 """ ...
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def quantize(kernel, w_p, w_n, t): """ Return quantized weights of a layer. Only possible values of quantized weights are: {zero, w_p, -w_n}. """ delta = t*kernel.abs().max() a = (kernel > delta).float() b = (kernel < -delta).float() return w_p*a + (-w_n*b)
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def _find_value_by_key(a_dict, key): """Find a key and return it, with a flag saying if it was found""" try: val = a_dict[key] except KeyError: return (False, None) return (True, val)
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from typing import Sequence def list_dict_values(dict_list: Sequence[dict], key: str) -> list: """ Return a list of all unique values for a given key in a list of dictionaries. Example usage: ``` mylist = [ { 'account_id': '1234567890', 'vpc_id': 'vpc-123', ...
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def split_long_line_with_indent(line, max_per_line, indent): """ Split the `line` so that it doesn't go over `max_per_line` and adds `indent` to new lines. """ words = line.split(" ") lines = [] current_line = words[0] for word in words[1:]: if len(f"{current_line} {word}") > max_per_line: ...
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