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def to_bytes( arg ): """Converts arg to a 'bytes' object.""" return bytes( bytearray( arg )) # if python2, 'bytes' is synonym for 'str'
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def flatten(l): """Return list `l` flattened.""" flat = [] for x in l: flat += flatten(x) if isinstance(x, list) else [x] return flat
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def indent(s, n=1, indent_str=" "): """Inserts `n * indent_str` at the start of each non-empty line in `s`.""" p = n * indent_str return "".join((p + l) if l.lstrip() else l for l in s.splitlines(True))
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def get_attack_from_name(self, attack_name): """ Get the player's attack with the given name. Arguments --------- attack_name : str The name of the attack to get. Returns ------- Attack The corresponding attack. """ for attack in self.entity.attacks: ...
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def a_test_filter(a, b): """Return a string containing both a and b.""" return f"{a}:{b}"
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def is_valid_argument_group_model(arg_group, arguments): """ Validates CLI model at specified argument group level. With this validation, every argument group is mandated to have title, description and arguments that go as a group. Parameters ---------- arg_group(dict): A dictonary object wh...
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from typing import List from typing import Union def _unicode_def_src_to_str(srclist: List[Union[str, int]]) -> str: """ Used to create :data:`UNICODE_CATEGORY_STRINGS`. Args: srclist: list of integers or hex range strings like ``"0061-007A"`` Returns: a string with all characters de...
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import re def word_wrap(text, line_width=80): """ Word wrap long lines to ``line_width`` """ text = re.sub(r'\n', '\n\n', text) return re.sub(r'(.{1,%s})(\s+|$)' % line_width, r'\1\n', text).strip()
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def sumatorio_tope(tope): """ Va sumando números naturales hasta llegar al tope. Ejemplos -------- >>> sumatorio_tope(9) 6 # 1 + 2 + 3 >>> sumatorio_tope(10) 10 # 1 + 2 + 3 + 4 >>> sumatorio_tope(12) 10 # 1 + 2 + 3 + 4 >>> sumatorio_tope(16) 1...
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from pathlib import Path import json def get_secrets_list(env: str) -> dict[str, set]: """Create a list of available app secrets, without their values.""" path = (Path() / "configuration").resolve() default_file = json.loads((path / "default.json").read_text()) env_file = json.loads((path / f"{env}.js...
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from typing import OrderedDict def sortByKey(theDict): """ Return an OrderedDict from a dict sorted by keys """ return OrderedDict(sorted(theDict.items()))
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def get_api_bool_string(api_bool): """Return KEMP restfull API version of a bool string""" return 'y' if api_bool else 'n'
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def split_extension(filename): """ Splits the extension off the filename and returns a tuple of the base filename and the extension (without the dot). :param str filename: The base filename string to split. :return: A tuple of the head (characters before the last '.') and the extension (characters after the ...
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def string_SizeInBytes(size_in_bytes): """Make ``size in bytes`` human readable. Doesn"t support size greater than 1000PB. Usage:: >>> from __future__ import print_function >>> from weatherlab.lib.filesystem.windowsexplorer import string_SizeInBytes >>> print(string_SizeInBytes(100...
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def encode_line_wordwise(line, vocab): """Given a string and vocab, return the word encoded version""" splited = line.split() sequence_input = [vocab.get(word, vocab['UNK']) for word in splited] sequence_input = [vocab['GOO']] + sequence_input + [vocab['EOS']] sequence_length = len(sequence_input) -...
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def format_runtime(runtime): """Formats the given running time (in seconds).""" if runtime < 60: # Just seconds. return '{:.2f}s'.format(runtime) # Minutes and seconds. return '{}m {}s'.format(int(runtime // 60), int(runtime % 60))
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import torch def softor(rasters: torch.Tensor, dim=1, keepdim=False) -> torch.Tensor: """Batched soft-or operation to combine rasters. Args: rasters: torch.Tensor of size [batch, *, nrasters, D*] representing stacks of nrasters images that will be composited into a single image dim...
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def clean(s, isInt=False): """ This function takes the string input from the HTML text area field and converts those entries into a list of floating-point numbers or integers (for bitwise operations) which will be used to intialize the matrices. This function assumes the string only has number valu...
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def register(name: str, registry: dict): """ Register a class or a function with name in registry. For example: CLS = {} @register("a", CLS) class A(object): def __init__(self, a=1): self.a = a cls_a = CLS['a'](1) In this way you can build...
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import time def DosDateTimeToTimeTuple(dosDateTime): """Convert an MS-DOS format date time to a Python time tuple. """ dos_date = dosDateTime >> 16 dos_time = dosDateTime & 0xffff day = dos_date & 0x1f month = (dos_date >> 5) & 0xf year = 1980 + (dos_date >> 9) second = 2 * (dos_time &...
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import re def detect_patient_age(info_par): """Returns age of patient described in paragraph of WHO assessment""" # Searches for "year-old" or 'year old' if re.findall('(\d{1,2}) ?(:?-?(year|month)(-| )old)',info_par) != []: age = re.findall('(\d{1,2}) ?(:?-?(year|month)(-| )old)',info_par)[0][0] ...
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def row(point): """ Given a point, return the row of the point. >>> row((0, 1)) 0 >>> row((1, 0)) 1 """ return point[0]
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import requests def num_stargates(sys_id): """ Returns the number of stargates in a specified system. :param sys_id: System ID (int) of the designated system to lookup :return: integer value of the number of gates in a system. Will always be >0 """ base_url = f"https://esi.evetech.net/latest/...
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def transpose(matrix): """ Transpose a matrix (defined as a list of lists, where each sub-list is a row in the matrix) """ # This feels dirty somewhow; but it does do exactly what I want return list(zip(*matrix))
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import asyncio async def simulation_timer(sim_duration, quit_app): """ stops the simulation after 'sim_duration' seconds have elapsed """ # loop = asyncio.get_running_loop() await asyncio.sleep(sim_duration) quit_app.set() return True
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import torch def AverageProportion( delays, src_lens, tgt_lens, ref_len=None, target_padding_mask=None): """ Function to calculate Average Proportion from Can neural machine translation do simultaneous translation? (https://arxiv.org/abs/1606.02012) Delays are monotonic steps, range from 1 to ...
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def _rotate_right(num: int, shift: int, size: int = 32): """Rotate an integer right.""" return (num >> shift) | (num << size - shift)
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def get_system_columns(columns): """Filters leaderboard columns to get the system column names. Args: columns(iterable): Iterable of leaderboard column names. Returns: list: A list of channel system names. """ excluded_prefices = ['channel_', 'parameter_', 'property_'] return [...
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def _intersection_homogenous(homog_line_0, homog_line_1): """Find point of intersection of two lines in homogenous coordinates""" # NB: renamed from '_intersection' eps = 1e-13 a,b,c=homog_line_0 u,v,w=homog_line_1 D=float(b*u-v*a) if abs(D)<eps: # parallel lines return None,...
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import time def wait_pipe_len(sock, expected, timeout=10): """ Wait up to ``timeout`` seconds for the length of sock.pipes to become ``expected`` value. This prevents hardcoding sleep times, which should be pretty small for local development but potentially pretty large for CI runs. """ ...
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def clean_data(df): """ This function cleans data from the provided dataframe Parameters: df is the dataframe with the messages and categories Return: df is the dataframe already clean with no duplicates """ print("df shape=",df.shape) duplicate = df[df.duplicated()] print("df...
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import re def _underscore(string): """ Convert a string from CamelCase to underscored """ string = re.sub(r'([A-Z]+)([A-Z][a-z])', r'\1_\2', string) return re.sub(r'([a-z0-9])([A-Z])', r'\1_\2', string).lower()
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def double(number: float) -> float: """ Here, we say that 'number' should be a float and the double() function should return a float. Python treats these annotations as hints, they are not enforced at runtime """ return 2 * number
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def is_rate_limit_error_message(message): """Check if the supplied error message belongs to a rate limit error.""" return isinstance(message, list) \ and len(message) > 0 \ and 'code' in message[0] \ and message[0]['code'] == 88
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import json def _read_missing_references_json(json_path): """ Convert from the JSON file to the form used internally by this extension. The JSON file is stored as ``{domain_type: {target: [locations,]}}`` since JSON can't store dictionary keys which are tuples. We convert this back to ``{(dom...
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import socket import struct def inet_nitoa(i): """Like inet_ntoa but expects an integer.""" return socket.inet_ntoa(struct.pack('>I', i))
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def needs_rename(string): """Search input string for illegal characters. If found, return True, list of characters found, cleaned name. If not, return False and two empty strings""" bad_characters = ["&", "$", "@", "=", ";", "+", ",", "?", "\\", "{", "^", "}", "%", "`", "]", "\"", ">", "[", "~", ...
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def listFile(*ignored_args, **ignored_kwargs): """No-op action callable that ignores arguments and returns (True, []). """ return True, [] # match only based on file names, which was done by caller
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def repository(app): """GitHub repository.""" return app.repository.html_url
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def seasonFromDate(date): """ Returns the value of season from month and day data of the timestamp Parameters ---------- date : String Timestamp or date string in format of YYYY-MM-DD or followed by timestamp Returns ------- season : STRING Season corresponding to the d...
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from typing import List def parse_to_lines(content: str) -> List[str]: """Metin içerisindeki satırların listesini oluşturur Arguments: content {str} -- Metin Returns: List[str] -- Satır listesi Examles: >>> parse_to_lines('Selam\\nNaber\\nNasılsın') ['Selam', 'Naber'...
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def update_state(reactants, products, state, rxn_ind, reverse): """ Updating the system state based on chosen reaction, during kMC simulation. Args: reactants: (n_rxns x 2) array, each row containing reactant mol_index of forward reaction products: (n_rxns x 2) array, each row containing pr...
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def get_param_value(mode, memory, ptr): """Returns the value of the parameter at memory[ptr] based on the mode""" # position mode if mode == 0: return memory[memory[ptr]] # immediate mode elif mode == 1: return memory[ptr] else: raise Exception
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def calc_tstart(num_bins, binsize, t_stop): """ Calculates the start point from given parameter. Calculates the start point :attr:`t_start` from the three parameter :attr:`t_stop`, :attr:`num_bins` and :attr`binsize`. Parameters ---------- num_bins: int Number of bins binsize: ...
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import requests def get_rates(url): """Method to get currency rates and returns status of request(boolean) and request response in JSON format. @:param str url: Exchange site url @:return boolean: True for successful response, else False. @:return dict: Response in case of success else empty dict...
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def _guess_desc(fname): """Attempts to guess the menu entry description from the function name.""" return fname.title().replace("_", " ")
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def make_actual_args(members): """Comma-separated name list used in actual arguments a, b, c """ return ", ".join(name for _, name in members)
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def update_parser(parser): """Parse the arguments from the CLI and update the parser.""" parser.add_argument( '--prepro_step', type=str, default='preprocessing', #'slicing', 'preprocessing' help='To execute a preprocessing method') #this is for allfeatures_preprocessi...
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import json def readJSONDict(filename): """ Retrieve stored dict from JSON file """ jsondict = {} with open(filename, 'rb') as infile: jsondata = infile.read() jsondict = json.loads(jsondata) return jsondict
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def is_member_of_group(status: str): """check, whether a given status indicates group-association Args: status (str): status to check Returns: bool: is a person with status in this group? """ possibleStati = ['creator', 'administrator', 'member', 'restricted'] return status in...
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def yaml_transformer(value: str) -> str: """A YAML transformer for Ruamel that places a blank line between each top level section.""" lines = value.splitlines() output = [] for line_no, line in enumerate(lines): if line_no and not line.startswith(' '): output.append('') out...
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from typing import Dict def __attempt_replace(line_args: str, labels_locs: Dict[str, int]) -> str: """ Atttempt to replace a label with its memory address. :param line_args: Part of the line including the arguments. :param labels_locs: Labels and their memory addresses. :return: Line with the labe...
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def agg_loss(method): """ Extract aggregate loss from full name of method. Args: method (str): full name of method Returns: str: aggregate loss """ if method[:6] == "hinge_": return method[6:] if method[:9] == "logistic_": return method[9:] if method[:7]...
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def nullility_corr(data, method="pearson"): """Calculates the nullility correlation between features in a DataFrame. Leverages pandas method to calculate correlation of nullility. Note that this method drops NA values to compute correlation. It also employs `check_missingness` decorator to ensure DataF...
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import re def clean_spaces(text: str) -> str: """Removes any consecutive white spaces in the text, as well as preceding and trailing whitespaces. Arguments: text: The text to be filtered. Returns: The filtered text. """ return re.sub( " +", " ", text )...
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def get_active_branch(repo): """Returns the active branch of the given local repository. Args: repo(git.Repo): Git Repo instance Returns: str: The name of the active branch. """ return repo.active_branch.name
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def df_set_diag(df, val, copy=True): """ Sets the diagonal of a dataframe to a value. Diagonal in this case is anything where row label == column label. :param df: pd.DataFrame DataFrame to modify :param val: numeric Value to insert into any cells where row label == column label :pa...
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def normalized_intersection(bbox1, bbox2): """ Intersection that is normalized with respect to the first bbox. :param bbox1: bounding boxes in the format [left, top, right, bottom] and shape [4]; dtype has to be np.ndarray or list :param bbox2: bounding boxes in the format [left, top, right, bot...
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def get_token_index(text, offset, tokens): """ >>> text = "A quick brownDasheyBhgx fox jump's over the lazy dog" >>> tokens = ['[CLS]', 'a', 'quick', 'brown', '##das', '##hey', '##bh', ... '##g', '##x', 'fox', 'jump', "'", 's', 'over', 'the', 'lazy', ... 'dog', '[SEP]'] >>> t...
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def const(v): """Return the value passed.""" def f(data): return v return f
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import torch def LSIGF_DB(h, S, x, b=None): """ LSIGF_DB(filter_taps, GSO, input, bias=None) Computes the output of a linear shift-invariant graph filter (graph convolution) on delayed input and then adds bias. Denote as G the number of input features, F the number of output features, ...
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def pad(source: str, pad_len: int, align: str) -> str: """Return a padded string. :param source: The string to be padded. :param pad_len: The total length of the string to be returned. :param align: The alignment for the string. :return: The padded string. """ return "{s:{a}{n}}".format(s=s...
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import configparser def read_setup_cfg(fname="setup.cfg"): """ Read the setup.cfg file into a dictionary. """ config = configparser.ConfigParser() # Use read_file to get a FileNotFoundError if setup.cfg is missing. Using # read returns an empty config instead of raising an exception. with ...
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import ast def _convert_to_expression(node): """ convert ast node to ast.Expression if possible, None if not """ node = ast.fix_missing_locations(node) if isinstance(node, ast.Module): if len(node.body) != 1: return None if isinstance(node.body[0], ast.Expr): expr ...
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def removeListDups(base_list,remove_list): """Remove items from one list from another Args: base_list (list): list to keep the non-duplicated values from remove_list (list): list of items to remove from base_list Returns: list : list of items in base_list NOT in remove_list """...
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def test_cache_memoize_arg_normalization(cache): """ Test taht cache.memoize() normalizes argument ordering for positional and keyword arguments. """ @cache.memoize(typed=True) def func(a, b, c, d, **kargs): return (a, b, c, d) for args, kargs in ( ((1, 2, 3, 4), {"e": 5}),...
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def to_integer(obj): """Converts `obj` to an integer. Args: obj (str|int|float): Object to convert. Returns: int: Converted integer or ``0`` if it can't be converted. Example: >>> to_integer(3.2) 3 >>> to_integer('3.2') 3 >>> to_integer('3.9') ...
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def get_clinvar_accession_from_clinvarset(elem): """ Gets the Clinvar accession from a ClinVarSet element :param elem: ClinVarSet Element :return: ClinVar Accession """ ## elem.xpath("//ClinVarAccession")[0].attrib['Acc'] ## this only works sometimes try: # return elem.xpath("//Clin...
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def children(node): """Returns a list containing all child nodes of a Traversable type node. Returns empty list when the node has no children. Used by BF/DF/Flat iterative tree visitor functions.""" try: k = node.getChildren() return k except: return []
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from typing import Union from typing import Tuple def divmod_int(numerator: Union[int, float], denominator: Union[int, float]) -> Tuple[int, int]: """Return the result of divmod, as a tuple of integers.""" quotient, remainder = divmod(numerator, denominator) return int(quotient), int(remainder)
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import string def clean_tokens(tokens): """Tokens are lower-cased, stripped of punctuation, and filtered for NULL.""" tokens = [w.lower().strip(string.punctuation) for w in tokens] tokens = [w for w in tokens if w] tokens = tokens or ["NULL"] return tokens
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def class_mix_data(data): """ > input: [[label, ...], [label, ...], [label, ...], ... ] > output: [ [[label, ...], [label, ...], [label, ...], ... ], <- class 0 [[label, ...], [label, ...], [label, ...], ... ], <- class 1 . . . [[label, ...], [label, ...], ...
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def show_in_nav_for(level=0, icon=None): """ Use as a class / method decorator to flag an exposed object in the site navigation @show_in_nav_for(users.guest) @expose class SubPage: ... """ def decorate(f): f.show_in_nav = level f.icon = icon f.exposed = True ...
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def get_sha1_or_none(repo, ref): """Return string of the ref's commit hash if valid, else None. :repo: a callable supporting git commands, e.g. repo("status") :ref: string of the reference to parse :returns: string of the ref's commit hash if valid, else None. """ commit = repo("rev-parse", "-...
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def anchor_in_soup(soup, anchor_name): """Find if a given anchor id is present in a HTML data""" return bool(soup.find("", {"id" : anchor_name})) or bool(soup.find("", {"name": anchor_name}))
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def is_dualtor(tbinfo): """Check if the testbed is dualtor.""" return "dualtor" in tbinfo["topo"]["name"]
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def read_lines(path): """ Reads lines from file into list with leading and trailing whitespace removed. """ with path.open() as f: lines = f.readlines() lines = [l.strip() for l in lines] return lines
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def get_no_aliens(sett, alien_width): """Determine the number of aliens that fit in a row. Spacing between each alien is equal to half alien width""" available_space_x = sett.screen_width - 1.5 * alien_width no_of_aliens = int(available_space_x / (1.5 * alien_width)) return no_of_aliens
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def greet(adventurer: str) -> str: """ returns a greeting string that greets the title cased adventurers name >>> greet('bob') 'Hello Brave Bob' :param adventurer: the name of the adventurer to greet :return: a greeting "Hello ..." """ return f"Hello Brave {adventurer.title()}"
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import re def process_tex(lines): """ Remove unnecessary section titles from the LaTeX file. """ new_lines = [] for line in lines: line = re.sub(r'^\s*\\strong{See Also:}\s*$', r'\paragraph{See Also}', line) if (line.startswith(r'\section{sknano.') or line.startswith(r...
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def split_csp_str(val): """ Split comma separated string into unique values, keeping their order. :returns: list of splitted values """ seen = set() values = val if isinstance(val, (list, tuple)) else val.strip().split(',') return [x for x in values if x and not (x in seen or seen.add(x))]
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def parse_incar(incar): """ Parameters ---------- incar: str Path to VASP incar Returns ------- encut: int Energy Cutoff """ encut = None with open(incar, "r") as f: for line in f: if "ENCUT" in line: encut = float(line.split("...
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def find_indices(nums, val): """Given a list, find the two indices that sum to a specific value""" for i, outer_num in enumerate(nums): for j, inner_num in enumerate(nums): if outer_num + inner_num == val: return (i, j) return False
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def expandtabs(s, tabstop=8, ignoring=None): """Expand tab characters `'\\\\t'` into spaces. :param tabstop: number of space characters per tab (defaults to the canonical 8) :param ignoring: if not `None`, the expansion will be "smart" and go from one tabstop to th...
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def getOutputShape(model, index = -1): """ Gets the shape of a single output. For compatibility returns the shape of the last output if there are multiple outputs. Return: Numeric dimensions, omits dimensions that have no value. eg batch size. """ s = [] ...
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def dice_outcome_extractor(run): """Return the atmospheric temperature of the final state.""" return run.states[-1].TATM
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import random def random_threshold_sequence(n,p,seed=None): """ Create a random threshold sequence of size n. A creation sequence is built by randomly choosing d's with probabiliy p and i's with probability 1-p. s=nx.random_threshold_sequence(10,0.5) returns a threshold sequence of length 10...
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def is_np_chunk(tree): """ Returns true if given tree is a NP chunk. A noun phrase chunk is defined as any subtree of the sentence whose label is "NP" that does not itself contain any other noun phrases as subtrees. """ if tree.label() == 'NP' and \ not list(tree.subtrees(lambda ...
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def linear(x, root): """ Returns a decay factor based on the linear function .. math:: f(x) = \\begin{cases} -x/root + 1 & \\mbox{if} x < root; \\\\ 0 & otherwise. \\end{cases} :param x: The function argument *x*. ...
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def get_flows_from_logbook(logbook, persistence_backend): """ Gets all flows for a logbook :param obj logbook: A TaskFlow logbook :param obj persistence_backend: A connection to the persistence backend :return iter[obj, ..] all_flows: An iterable of flow objects """ return persistence_backen...
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def to_layer(operation_list, num_wires): """Convert the given list of operations to a layer. Args: operation_list (list[~.Operation]): List of Operations in the layer num_wires (int): Number of wires in the system Returns: list[Union[~.Operation,None]]: The corresponding layer ...
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def add_ids(edges): """ Adds ids to edges missing ids """ for e in edges: if 'id' not in e: e['id'] = e['subject'] + '-' + e['predicate'] + '-' + e['object'] return edges
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from typing import Hashable def _key_from_dict(d) -> Hashable: """Convert nested dict into a frozen, hashable structure usable as a key.""" if isinstance(d, dict): return frozenset((k, _key_from_dict(v)) for k, v in d.items()) elif isinstance(d, (list, tuple)): return tuple(map(_key_from_dict, d)) els...
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def compute_optalpha(norm_r, norm_Fty, epsilon, comp_alpha=True): """ Compute optimal alpha for WRI Parameters ---------- norm_r: Float Norm of residual norm_Fty: Float Norm of adjoint wavefield squared epsilon: Float Noise level comp_alpha: Bool Whether ...
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def _return_ordered_config(unordered_config: dict, template_config: dict) -> dict: """Orders the keys in unordered_config according to the order in template_config. Note this function assumes all keys in both dictionaries are identical, including all nested dictionaries. """ # create a dictionary ...
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def num_to_bitstring(num, length): """Returns string of bits from number, truncated at length. Algorithm: While the number storing the bitvector is greater than zero, find the last digit as (num mod 2) and then bit-shift the string to the right to delete the last digit. Add the digits into a string fr...
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import re def embolden(word, quote): """Make word bold in quote, regardless of but maintaining case""" return re.sub(r"(" + word + r")", r"<b>\1</b>", quote, flags=re.I)
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def get_function_name(stack_outputs, function_logical_id): """Obtains the function name from given stack outputs. :type stack_outputs: dict :param stack_outputs: CloudFormation stack outputs. :type function_logical_id: str :param function_logical_id: logical ID of the function resource. :rtyp...
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def header_population(headers): """make column headers from a list :param headers: list of column headers :return: a list of dictionaries """ return [{'id': field, 'name': field, 'field': field, 'sortable': True} for field in headers]
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def getRawTimes(grid): """ A helper function to get all times inside a grid, returns a list of times """ times=[] for i in range(grid.getDomainSet().getLength()): times.append(grid.getDomainSet()[i].getValue()) return times
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