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import contextvars def RunInNewContextMiddleware(app, wsgi_env, start_response): """Runs the app in a copy of the current context. Start every request by calling contextvars.copy_context() and running the rest of the request in the newly copied context. This ensures that each request has its own context that...
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def strip_comments(content): """Manual striping of comments from file content. Many localized content pages contain original English content in comments. These comments have to be stripped out before analyzing the links. Doing this using regular expression is difficult. Even the grep tool is not su...
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def hsl_to_str(hue, sat, light): """ Convert an HSL color value into a string. Args: hue (int): value between 0-360 sat (int): value between 0-100 light (int): value between 0-100 Returns: str: string representation of the HSL tuple. Note that the hue is an integer...
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def mean(values, empty=0): """ calculates mean of generator or iterator. Returns `empty` in case of an empty sequence """ n, mean = 0, 0 for value in values: n += 1 mean += (value - mean) / n return mean if n > 0 else empty
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def sum_payout(cost_matrix, confusion_matrix): """ Calculate the profit from cost and confusion matrices. """ return (confusion_matrix * cost_matrix).sum()
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import torch def batch_matmul(input: torch.Tensor, weight: torch.Tensor) -> torch.Tensor: """ Batch matrix multiply different batch elements of the input with different weights. If weights are 3D, Input batch is divided in N groups, and each group element is matrix multiplied by a different filter. I...
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def spawn(awaitable): """Start running a coroutine asynchronously. Returns the associated task.""" return (yield ("create_task", awaitable))
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def get_iso_time(date_time): """ Converts the provided datetime object to an ISO-format time-tag. Parameters ---------- date_time : datetime.datetime Datetime object to convert to ISO format. Returns ------- time_in_iso : str Provided time in ISO format: YYYY-MM-DDTHH:M...
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def is_any_in_txt(txt_list, within_txt): """ Within (txt_list), is there one item contained in within_txt ? Example: (['a', 'b'], 'ab') --> Yes, a is contained in ab """ for x in txt_list: if x in within_txt: return True return False
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import math def format_count(number, maxlen=3): """ Returns a formatted count number, e.g. "1.3K" if number is longer than allowed maximum. """ result = str(number) if len(result) > maxlen: UNITS = "KMGTPEZY" log = min(len(UNITS) - 1, math.floor(math.log(number, 1000))) ...
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def redcap_default_ship_to_vbr_location() -> str: """Returns the VBR Location ID shipment location for UCSD""" # Response is a location_id mapped to these locations # See src/scripts/data/location.csv return "1"
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import re def process(s): """Process the file name as input string s to ensure that it adheres to Windows file naming requirements. """ if len(s) > 240: s = s[0, 240] return ''.join(re.split(r"[\\\:\*\?\"\<\>\|]", s.strip()))
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def ignore_filename(fn, include_dotdirs=False): """ Ignores particular file name patterns output by TSK. Detecting new and renamed files becomes difficult if there are 3+ names for an inode (i.e. "dir", "dir/.", and "dir/child/.."). """ return (not include_dotdirs and (fn.endswith("/.") or fn.e...
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def find_neighbor(x,y): """if y is within +-10bp of x""" # print (x,y) chr_x = x[:-1].split(":")[0] start_x = int(x[:-1].split(":")[-1].split("-")[0]) chr_y = y[:-1].split(":")[0] start_y = int(y[:-1].split(":")[-1].split("-")[0]) # print (chr_x,chr_y,start_x,start_y) if chr_x != chr_y: return False if abs...
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def mask_sequence(seq, maskchar, fpos, tpos): """Given a sequence, mask it with maskchar starting at fpos (including) and ending at tpos (excluding) """ if len(maskchar) > 1: raise RuntimeError("Internal error: more than one character given to mask_sequence") if fpos < 0: fpos = 0 ...
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def fibonacci(n): """ this function has one parameter (n). this function should return the nth value in the fibonacci series. the function is implemented using recursion. each number in the fibonacci sequence is the sum of the two numbers that precede it. the sequence goes: 0, 1, 1, 2, 3, 5, 8...
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def clear(df,col,val): """ Check distribution of variable This function accepts a dataframe,column(feature) and value which returns count of the value, containing the value counts of a variable(value_counts) Keyword arguments: df - Pandas dataframe col - Feature of the datagrame va...
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def gen_backend_tfvars_files(environment, region): """Generate possible Terraform backend tfvars filenames.""" return [ "backend-%s-%s.tfvars" % (environment, region), "backend-%s.tfvars" % environment, "backend-%s.tfvars" % region, "backend.tfvars" ]
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def get_prot_res_seq_cif(CifDict, EntNum): """ Gives sequence as taken from mmCIF file, entity poly pdbx seq section Takes the canonical sequence. Parameters ---------- CifDict: dict EntNum: int Returns ------- canonseq: str """ # canon_seqlist = CifDict["_entity_poly.p...
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def get_direct_deps(graph, top_node): """Gets the direct dependencies of given top_node. @param graph The graph to read for dependencies. @param top_node The node, which dependencies are wanted. @return The dependencies in a set. """ deps = set() for i in range(len(graph.body)): if ...
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import math def applyDeadZone(val, deadZone): """ Apply a dead zone to an input with no other smoothing. Values outsize the dead zone are correctly scaled for 0 to 1.0 :return: The float value of the adjusted intput """ sign = 1.0 if val < 0.0: sign = -1.0 val = math.fabs(val)...
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import torch def xyxy2xywh(box: torch.Tensor) -> torch.Tensor: """ Returns the xywh format of the input bounding box tensor Arguments: box (torch.Tensor): Bounding box tensor in xyxy format Output: output (torch.Tensor): Bounding box tensor in xywh format """ ...
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def parse_email_remediation_key(key): """Returns the tuple (message_id, recipient) for the key created using create_email_remediation_key.""" return key.split(':', 1)
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def read_text(file_name): """ Parameters ---------- file_name : string, name of file to read Returns ------- line : string of the file contents """ inFile = open(file_name,'r') # Python function to open a file via name line = inFile.read() # Function to read contents into ...
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def bezier2(t, ps): """ evaluate quadratic bezier curve at t given three points in list ps """ umt = 1 - t return umt * umt * ps[0] + 2 * umt * t * ps[1] + t * t * ps[2]
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def is_valid_filename_extension(ext: str) -> bool: """ By convention extensions are the initial `.`. E.g., "tgz" is valid, but not ".tgz". """ valid = not ext.startswith(".") return valid
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def beautify_url(url): """ Remove the URL protocol and if it is only a hostname also the final '/' """ try: ix = url.index('://') except ValueError: pass else: url = url[ix+3:] if url.endswith('/') and url.index('/') == len(url)-1: url = url[:-1] return ur...
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import json def story(request): """ Provides a detailed HPACK story to test with. """ path = request.param with open(path, 'r', encoding='utf-8') as f: details = json.loads(f.read()) return details
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def parse_model_cfg(path): """Parses the yolo-v3 layer configuration file and returns module definitions""" file = open(path, 'r') lines = file.read().split('\n') lines = [x for x in lines if x and not x.startswith('#')] lines = [x.rstrip().lstrip() for x in lines] # get rid of fringe whitespaces ...
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def make_str_content(content): """ In python3+ requests.Response.content returns bytes instead of ol'good str. :param content: requests.Response.content :return: str representation of the requests.Response.content data """ if not isinstance(content, str): content = str(content.decode()) ...
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def beta(R0, gamma): """ R0 from model parameters. """ return R0 * gamma
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import re def get_build_number_from_body(body): """Extracts the build number from the given body. Arguments: body {dict} -- The body as extracted by `extract_body()` Returns: str -- The build number if given. If there's an error extracting this or if the build numb...
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def format_time(decisecond): """ Convert time in tenths of seconds into formatted string m:ss.t :param decisecond: int >= 0 :return: str """ assert isinstance(decisecond, int) assert decisecond >= 0 decisecond, tenths = decisecond//10, decisecond % 10 minutes, seconds = decise...
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def make_iterator(args, lock, queue): """ Makes an iterator over args and passes the lock an queue to each element. """ return ((arg, lock, queue) for arg in args)
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import pickle def pickle_save(obj, fp, verbose=1): """Save an object as a pickle file.""" try: with open(fp, 'wb') as f: pickle.dump(obj, f) except Exception as err: if verbose: print("Saving object failed. Error:", err) return False else: if verbose: print(...
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import socket def is_valid_ip_address(ip_addr): """This method checks if string provided is a valid IP address Args: ip_addr (str): IP Address String Returns: (boolean): True/False """ try: socket.inet_aton(ip_addr) return True except (socket.error, TypeError): ...
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def sync_batch_request(func, params, get_data=lambda x: x["info"], limit=500): """ 同步请求接口 :param func: 请求方法 :param params: 请求参数 :param get_data: 获取数据函数 :param limit: 一次请求数量 :return: 请求结果 """ # 如果该接口没有返回count参数,只能同步请求 data = [] start = 0 # 根据请求总数并发请求 while True: ...
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import torch def batch_torch_denormalize_box_params(box_params, scale=3): """ Denormalize the box parameters utilizing the accumulated dateaset statistics :param box_params: float tensor of shape [N, 6] containing the 6 box parameters, where N is the number of boxes :param scale: float scalar that scales...
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def read_voca(path): """ open file from path and read each line to return the word list """ with open(path, 'r') as f: return [word.strip() for word in f.readlines()]
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import locale def get_day_name(day): """ Get the short day name in the currently activated locale. :param day: :return: day 0 = Sunday """ # Locale keys are 1=Sun, 2=Mon, ... locale_key = "ABDAY_%d" % (1 + day) option = getattr(locale, locale_key) day_name = locale.nl_langinfo(...
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def color_to_str(C): """Convert color value to hex string.""" # Scale from [0-1] to [0-255] V = [int(round(c * 255)) for c in C] # Clamp values to [0-255] for i in range(len(V)): V[i] = max(min(V[i], 255), 0) return '#{:02X}{:02X}{:02X}'.format(V[0], V[1], V[2])
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import struct def decode_ga(ga: int) -> str: """ Decodes a group address into human readable string representation >>> decode_ga(270) '0/1/14' """ if not isinstance(ga, int): ga = struct.unpack('>H', ga)[0] return '{}/{}/{}'.format((ga >> 11) & 0x1f, (ga >> 8) & 0x07, (ga) & 0xff)
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def ccw(a, b, c): """ 1: c is left of the line a->b -1: c is on the right of line a->b 0: c is on the line a->b >>> ccw(Vector(0, 0), Vector(3, 4), Vector(6, 8)) 0 >>> ccw(Vector(0, 0), Vector(3, 4), Vector(6, 9)) 1 >>> ccw(Vector(0, 0), Vector(3, 4), Vector(6, 7)) -1 """ ...
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import ast def get_literal_tuple(param_type): """ get literal option from annotation string and return result in tuple. """ s_index: int = str(param_type).index('[') e_index: int = str(param_type).index(']') str_list = str(param_type)[s_index + 1:e_index] res = ast.literal_eval(str_list) ...
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from pathlib import Path from typing import List def get_all_files_in_directory(path: Path) -> List[Path]: """ Returns all the files in a directory structure. For example, given a directory structure like:: dir_a: dir_b, file_a, file_b dir_b: file_c and you provide the path to ``dir...
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import copy def get_object_state(obj, ignore_attributes=()): """Returns a dictionary with the state of the attributes of an object. Note that this is not general. For example, it will throw an error for classes that define a __slots__ field (like namedtuples). Args: obj: a Python object ignore_attri...
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def remove_trailings(input_string): """ Remove duplicated spaces. """ output_string = " ".join(input_string.split()) return output_string
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def scaleFromRedshift(redshift): """ Converts a redshift to a scale factor. :param redshift: redshift of the object :type redshift: float or ndarray :return: scale factor :rtype: float or ndarray """ return 1. / (redshift + 1.)
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def calc_f_number(aperture_diameter, focal_length): """ Calculate the f-number N (or f#) of an optical system. https://en.wikipedia.org/wiki/F-number Returns ------- double : no units """ return focal_length / aperture_diameter
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def timezone_format(value): """ Check the value of the timezeone offset and, if postive, add a plus sign""" try: if int(value) > 0: value = '+' + str(value) except: value = '' return value
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import click def prompt_for_dsn(dsn): """ Prompt interactively for postgres database connection details. :return: dictionary with the keys: host, port, database, user, password """ click.echo('Please provide PostgreSQL connection info:') # Note: Using '' as the prompt default is necessary to...
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def fastFib(n, memo = {}): """ Assumes n is an int >= 0, memo used only by recursive calls Returns Fibonacci of n """ if n == 0 or n == 1: return 1 try: return memo[n] except KeyError: result = fastFib(n-1, memo) + fastFib(n-2, memo) memo[n] = result ...
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def escape_for_query(query_part: str) -> str: """Escapes all characters reserved by jriver in a natural string. Do not put a complete query in here - this method is used to escape reserved characters in a natural string that will be used as a query fragment. This is usually the content of a field (e.g....
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def create_firmware_update_payload(device_info: dict, compliance_data_list: list) -> list: """ Creates the payload to send to OME to execute the firmware update Args: device_info: A dictionary of dictionaries containing the type information for each device compliance_data_list: A list of di...
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from typing import OrderedDict def mapProfiles(settings): """Profile ID mapped to index in the list in an OrderedDict""" profileMap = OrderedDict() i = 0 print(settings) while i < len(settings): if "profileID" in settings[i]: index = settings[i]["profileID"] profil...
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def test_datasource_connection(connection, body, error_msg=None): """Test a datasource connection. Either provide a connection id, or the connection parameters within connection object. Args: connection: MicroStrategy REST API connection object. body: Datasource Connection info. err...
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def _noto_relative_path(filepath): """Return relative path from some noto root, or None""" x = filepath.find('noto-fonts') if x == -1: x = filepath.find('noto-cjk') if x == -1: x = filepath.find('noto-emoji') if x == -1: return None return filepath[x:]
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import jinja2 def load_template(in_template): """ Returns a jinja2 template from file. Parameters --------- in_template: str path and name of jinja2 template Returns ------- output_template: jinja template object """ with open(in_template, 'r') as default: output_...
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def parse_ptimes(ln): """ Mini function for getting the time (in a string) from a line of an errlog file. """ timestring = ln.split(" ")[3] return timestring
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def wrap(x, low, high): """Wraps data between low and high boundaries.""" diff = high - low while x > high: x -= diff while x < low: x += diff return x
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def _get_chunks(text, length=200, overlap=50): """Splits text into chunks Args: text (str): Text length (int, optional): Chunk length. Defaults to 200 overlap (int, optional): Chunk overlap. Defaults to 50 Return: list: Text chunks """ l_total = [] l_partial = ...
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def _get_header(soup): """Extract the column names from the "list-row-headings" class. Parameters ---------- soup: bs4.BeautifulSoup The html web page. Returns ------- list Each element is a string with a column name. """ column_heading_class = "list-row-headings" ...
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def getDistance (origin, point): """ Returns the distance between two points. """ dist = ((origin[0]-point[0])**2 + (origin[1]-point[1])**2)**0.5 return dist
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def cart_count(a) -> int: """ Count the number of items in the cart. :param a: List of products. Untyped as I'm unsure how 'dict_items' type truly works. :return: Int of the number of items in the cart. """ count = 0 # a is of type 'dict_items' for i, this_tuple in enumerate(a): ...
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import re def confirm(prompt, default='y'): """Confirmation prompt.""" default = default.lower() if default not in ['y', 'n']: default = 'y' choicebox = '[Y/n]' if default == 'y' else '[y/N]' prompt = prompt + ' ' + choicebox + ' ' while True: some_input = input(prompt).strip(...
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def check_if_number_even(n): """ checks if int n is an even number """ if (n % 2) == 0: return True else: return False
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def is_close(first, second, rel_tol=1e-09, abs_tol=0.0): """ Almost equality for float numbers :param first :param second :param rel_tol: relative tolerance, it is multiplied by the greater of the magnitudes of the two arguments; as the values get larger, so does the allowed difference ...
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def user_id(uid): """Google user unique id to feedly ``:user_id`` format :param uid: Google unique account UUID :type uid: :class:`basestring` :returns: :rtype: :class:`basestring` >>> user_id('00000000-0000-0000-0000-000000000000') 'user/00000000-0000-0000-0000-000000000000' ...
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def timedelta_to_seconds(delta): """ Take a timedelta object and return the total number of seconds. """ return delta.seconds + (delta.days * 86400)
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def fetch_all_table_names(schema, eng): """ Finds all tables within a given schema. """ tables = eng.execute( f"SELECT table_name FROM information_schema.tables WHERE table_schema = '{schema}';" ) return [table[0] for table in tables]
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def is_xml_article_set(filename: str) -> bool: """ Check if input file is pubmed xml compressed archive from name. Arguments: filename {str} -- the name of the file Returns: bool -- true if file is compressed pubmed article set """ if filename.endswith('.xml.gz'): retur...
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def get_bd_addr(packet): """Helper function to get bd_addr filed from HCI CMD/EVT packet. Args: packet: packet object from pyshark. Returns: bd_addr value (MAC string). If the packet doesn't have bd_addr or not is not HCI CMD/EVT, will return None. """ bd_addr = None if 'bthci_evt' in packet: ...
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from typing import Dict from typing import Union def od_parse(data: str) -> Dict[str, Union[str, list]]: """Parse od command output without argument, return a dict with the following keys: hex, ascii, list, text Returns: dict: with key hex, ascii, list, text """ text, asc_data, hex_data, list_...
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import re def ShellEscape(arg): """ Escape a single argument for passing into a remote shell """ arg = re.sub(r'(["\\])', r'\\\1', arg) return '"%s"' % arg if re.search(r'[\' \t\r\n]', arg) else arg
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import re def get_args(argv): """Store command-line args in a dictionary. -, -- prefixes are removed Items not prefixed with - or -- are stored as a list, indexed by 'args' For options that take a value use --option=value Consider using optparse or getopt (in Python standard library) instea...
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import math def calc_term_count(order, var_count): """ Inputs: order- the order of the model var_count- the number of variables in the model Calculates the number of terms in a model. """ term_count = int( math.factorial(order + var_count) / (math.factorial(order) ...
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import re def timestamp_to_terraref(timestamp): """Converts a timestamp to TERRA REF format Args: timestamp(str): the ISO timestamp to convert Returns: The ISO string reformatted to match the TERRA REF time & date stamp. Returns the original string if time units aren't specified ...
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def min_point(points, n_points): """ Return the index of the closest point to (0,0) :param points: tuple of list for each coordinate :param n_points: number of points :return: the index of the selected point in the list """ min_y_indexes = [0] min_y = points[1][0] # Find minimum y ...
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import re from bs4 import BeautifulSoup def remove_html_tags(text): """ Removes HTML tags from text. """ # prevent missing white space in further deletion of html symbols text = re.sub('<p>', ' ', text) # add punctuation after headings text = re.sub('</h1>', '. ', text) text = re.sub('</h2>'...
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def _is_2xx_status(status_code): """Returns 'True' if a given status code is one of successful.""" return str(status_code).startswith("2")
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from datetime import datetime def output_filename(filename, cli_args): """ Construct the output filename """ if cli_args.timestamp: date_time = datetime.now().strftime("%m-%d-%Y_%H.%M.%S") lname = filename.split(".")[0] rname = filename.split(".")[-1] new_filename = f"{...
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import math def update_one_contribute_score(user_total_click_num): """ item cf update similarity score by user :param user_total_click_num: :return: 1/log(1 + input) """ return 1 / math.log10(1 + user_total_click_num)
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def nCr(n,r): """Calculate ways of selecting *r* members out of a collection of *n* members. :param n: Size of the collection :param r: Number of members to be selected from the collection :returns: n!/[r!(n-r)!] .. note:: :sup:`n` C :sub:`r` is typically read as *n co...
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import copy def firecrown_sanitize(config): """Sanitizes the input for firecrown, that is removes keys that firecrown doesn't recognize Parameters: ---------- config : dict The dictinary that is ready for firecrown to munch on, but might have extra keys that are augur specific...
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def _scalarize(value): """Scalarize a value. If VALUE is a list that consists of a single element, return that element. Otherwise return VALUE.""" if type(value) == list and len(value) == 1: return value[0] return value
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def MeansOpenInProject(status, config): """Return true if this status means that the issue is still open. Args: status: issue status string. E.g., 'New'. config: the config of the current project. Returns: Boolean True if the status means that the issue is open. """ status_lower = status.lower()...
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def choose_peers(relay, relay_count, worker_count, min_w2r, min_r2w): """ Given `relay`, the position of relay within the affinity set for a given service, the number of relays in that set (`relay_count`), the number of workers for the service (`worker_count`), the minimum number of connections requ...
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def str_as_bool(val): """ Interpret the string input as a boolean """ if val.lower() in ("false", "none", "no", "0"): return False return True
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def MakeCopyList(alist): """Make a copy of a list""" #newlist = the copied list newlist = [] for x in range(len(alist)): newlist.append(alist[x]) return newlist
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import re def scraping_txt_file(filetxt): """This scrape the data inside text files using regular expression. """ datum = [] with open(filetxt, "r", encoding="latin1") as foo: for line in foo: # I think a genertator is imaginable here! pattern = re.compile( r"(?P<Date_...
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def val_interpolate(x1, y1, x2, y2, x): """Perform linear interpolation for x between (x1,y1) and (x2,y2) """ d = [[x1, y1],[x2, y2]] output = d[0][1] + (x - d[0][0]) * ((d[1][1] - d[0][1])/(d[1][0] - d[0][0])) return(output)
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def subtract(x, y): """ Returns the first vector minus the second. """ n = len(x) assert len(y) == n return map(lambda i: x[i]-y[i], range(0, n))
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import re def remove_non_ascii(text): """ Remove non ascii characters in the text Parameters ---------- text : str Returns ------- text: str """ return re.sub(r'[^\x00-\x7F]', ' ', text)
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def lens(lists): """Returns the sizes of lists in a list.""" return list(map(len, lists))
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import pickle def load_transform(file): """ Load a transform object """ with open(file, 'rb') as input_file: transform = pickle.load(input_file) return transform
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def report_file_path(report_path, report_label, report_extension): """ Function to create a path for report files. Parameters: report_path (path): Report file path report_label (str): Report file label report_extension (str): Report file extension. e.g. txt, csv Return: r...
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def random_walk_step(r, p0, W, pt): """ r = probability of restart p0 = initial probability vector W = column-normalized adjacency matrix pt = probability vector at time step t pt = probability vector at time step t + 1 """ #print 'r', r #print 'W', W #print 'pt', pt #print '...
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import math def distance_nautical_miles(ll1,ll2): """ Given two (lat,lon) points ll1 and ll2, returns the distance between them in nautical miles. """ lat1,lon1=ll1 lat2,lon2=ll2 rad = math.pi / 180.0 yDistance = (lat2 - lat1) #* nauticalMilePerLat xDistance = (math.cos(lat1 * rad) + math.cos(l...
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def pairwise_diff(X, Y): """Compute pairwise difference of rows of X and Y. Returns tensor of shape len(X) x len(Y) x dim.""" return X.unsqueeze(1) - Y
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import re def _tracwiki_list_separate_from_paragraph(text: str): """ During conversion from TracWiki to RST, ensure an empty line between each non-list-item and the list item following it, if any. """ lines = text.split('\n') newlines = [] was_list_item_or_blank = True for l in lines...
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