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def get_height_of_objects(tet_file): """Return the height of the test object.""" mesh_lines = list(open(tet_file, "r")) mesh_lines = [line.strip('\n') for line in mesh_lines] zs = [] for ml in mesh_lines: sp = ml.split(" ") if sp[0] == 'v': zs.append(float(sp[3])) ret...
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def add_element_to_dict(dictionary, element): """ Adds an element to a dictionary. If not in dictionary, adds a new key to dictionary. :param dictionary: dictionary :param element: string :return: updated dictionary """ if len(element) == 1: return dictionary if element not in dict...
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def generate_range(min: int, max: int, step: int) -> list: """ This function generates a range of integers from min to max, with the step. """ return [i for i in range(min, max + 1, step)]
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import math def rotate_image_point(x, y, xmid, ymid, angle): """ rotate image point about xm, ym by angle in radians Arguments: x: x coordinate of point to rotate y: y coordinate of point to rotate xmid: x coordinate of center point to rotate about ymid: y coordinate of ce...
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def train_model(model, feature_matrix, train_values): """ Train classifier model :param model: classifier model :param feature_matrix: feature matrix :param train_values: values to train the model on :return: trained model """ model["classifier"].fit(feature_matrix, train_values) ret...
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def make_bigrams(bigram_mod, texts): """Form bigrams in text Args: bigram_mod (gensim.models.phrases.Phraser): Gensim bigram model texts (list): 2-dimensional list of words Returns: (list): bigrams formed from texts """ return [bigram_mod[doc] for doc in texts]
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def deg_to_hms(deg): """Convert decimal degrees to (hr,min,sec)""" h = int(deg)//15 deg -= h*15 m = int(deg*4) s = (deg-m//4)/15. return h,m,s
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def logical_not(s): """ Return the logical negation of the given binary string :param s: the string to convert :type s: str :return: str """ ns = '' for c in s: if c == '0': ns += '1' elif c == '1': ns += '0' else: raise Excepti...
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def substring_search(word, collection): """Finds all matches in the `collection` for the specified `word`. If `word` is empty, returns all items in `collection`. :type word: str :param word: The substring to search for. :type collection: collection, usually a list :param collection: A collect...
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import math def std_periodic_var(p, mid=0.0, pi=math.pi): """ Transform a periodic variable into its range. >>> std_periodic_var(math.pi) -3.1415... >>> std_periodic_var(2*math.pi + 0.01) 0.0... :param p: Value :param mid: The middle value :param pi: Half-range :return: The ...
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import bz2 import gzip def open_output(output, opts): """Open output file with right compression library """ if opts.bzip: return bz2.open(output, 'wt') elif opts.gzip: return gzip.open(output, 'wt') else: return open(output, 'w')
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def setup_info_args(parser, parent): """Helper function to set up a subparser for the `info` command. :param parser: argparse parser to add the `info` command to :type args: argparse.ArgumentParser :param parent: argparse parser parent of the newly added subcommand. used to inherit s...
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def _splitstrip(string, delim=u','): """Split string (at commas by default) and strip whitespace from the pieces. """ return [s.strip() for s in string.split(delim)]
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from re import match def valid_input(instructions): """ Validate input to be a multi-line string containing directions [UDLR]+ :param instructions: Multiline string input :return: Boolean value whether input is valid """ m = match(r'[UDLR]+', ''.join(instructions)) return m is not None and...
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def get_member_by_name(slack_client, user_name): """ Return the member matching the given user_name. """ memberList = slack_client.api_call("users.list") if memberList and memberList['members']: for member in memberList['members']: if member['name'] == user_name: ...
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def _remove_tags(tags, removals): """ In all tags list, remove tags in removals. """ for tag in removals: while tag in tags: tags.remove(tag) return tags
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def extract_data_values(data, value_key): """Extract value from a pandas.DataFrame Parmeters --------- data : dict The raw data. value_key : string A column in data which contains the values we are to extract. Returns ------- values : dict A dict where the keys ...
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def get_deletions_x(parsed_mutations, max_mutations_per_pos_dict): """Get x coordinates of deletion markers to overlay in heatmap. These are the linear x coordinates used in the Plotly graph object. i.e., the indices of data["heatmap_x_nt_pos"] :param parsed_mutations: A dictionary containing multiple...
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from typing import List from typing import Dict def get_phrases(buckets: List, data: Dict) -> Dict[float, List[str]]: """ Returns a dictionary of (timestamp, words) where words contains the phrases spoken at `timestamp`. :param buckets: Python list of bucket timestamps (from GT). :param data: Dictionary of tim...
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import json import requests def parse_github(username): """ This function allows, according to a Github username, to return its node_id, its id as well as its name Example: parse_github("av1m") # ["MDQ6VXNlcjM2NDU2NzA5", 36456709, "Avi Mimoun"] :param username: corresponds to the username Github...
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def is_single_word_predicate(node): """ Return true iff the node represents a single-word, non-implicit, predicate """ return node.isPredicate \ and (len(node.text) == 1) \ and (not node.is_implicit())
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def has(l , key, value): """Check if list has dict with matching key-value pair Parameters ---------- l : List[Dict[str, Any]] List to check for matches key : str Key to find in list's dictionaries value : Any Value to be compared with value in suitable key-value pair in...
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def update_server_size(tests_dataframe): """ Creates a new column, server_size, set all values to 0. Parameters: tests_dataframe: DataFrame pandas dataframe object Returns: tests_dataframe: DataFrame dataframe object with server_size column """ tests_dat...
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import re def replace_term(text, old_term, new_term): """Replaces term in the text with another term""" result = re.sub(old_term, new_term, text) return result
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import torch from typing import List def named_tensor_split(tensor: torch.Tensor, split_size: int, dim: str) \ -> List[torch.Tensor]: """ As working in torch.split but added list() Args: tensor (): the tensor to split split_size (): the size of the splits dim (): the dimens...
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def tzy_flatten(ll): """ Own flatten just for use of this context. Expected outcome: > flatten([1, 2, [3, 4], [5]]) [1, 2, 3, 4, 5] Only goes 1 depth so should be O(n) time, but also O(n) space """ ret = [] for item in ll: if isinstance(item, list): for su...
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def num_elements(num): """Return either "1 element" or "N elements" depending on the argument.""" return '1 element' if num == 1 else '%d elements' % num
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def elements_adjacent(elements, index1, index2): """Check if two elements are adjacent.""" return ( elements[0, index1] == elements[0, index2] or elements[0, index1] == elements[1, index2] or elements[0, index1] == elements[2, index2] or elements[1, index1] == elements[0, index2]...
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import torch def mixture_consistency(mixture, est_sources, src_weights=None, dim=1): """ Applies mixture consistency to a tensor of estimated sources. Args mixture (torch.Tensor): Mixture waveform or TF representation. est_sources (torch.Tensor): Estimated sources waveforms or TF ...
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def format_time(time, unit, delimiter=False): """ A function to format a unit of time, so it is readable when it is output to Discord. """ if time > 0: if time > 1: unit += 's' elapsed = f"{time} {unit}" if delimiter: elapsed += ',' return ...
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def how_many_days(month_number): """Returns the number of days in a month. WARNING: This function doesn't account for leap years! """ days_in_month = [31, 28, 31, 30, 31, 30, 31, 31, 30, 31, 30, 31] result = days_in_month[month_number - 1] return result
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def batch_to_device(batch, target_device): """ send a batch to a device :param batch: :param target_device: :return: the batch sent to the device """ features = batch['features'] for paired_sentence_idx in range(len(features)): for feature_name in features[paired_sentence_idx]: ...
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def get_email_template( plugin_configuration: list, template_field_name: str, default: str ) -> str: """Get email template from plugin configuration.""" for config_field in plugin_configuration: if config_field["name"] == template_field_name: return config_field["value"] or default r...
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def circular_between(start, bet, end): """Finds if bet is in between start and end Arguments: start {Integer} bet {Integer} end {Integer} Returns: Boolean -- True if it is in between, else False """ if end > start: return (bet > start and bet < end) ...
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import typing def flatten_catalog(catalog: typing.List[dict]) -> dict: """Turn the raw service catalog into a simple dict.""" return { service['type']: { endpoint['region']: endpoint['url'] for endpoint in service['endpoints'] } for service in catalog }
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def lyambda_fact_bot(m_distrib, R, P_mol, F_mol, phi): """ Calculates the the factor of masstransfer. Parameters ---------- m_distrib : float The distribution coefficient, [dismensionless] R : float The reflux number, [dismensionless] P_mol : float The flow rate of di...
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def run(action, *args, **kwargs): """ :doc: run :name: renpy.run :args: (action) Run an action or list of actions. A single action is called with no arguments, a list of actions is run in order using this function, and None is ignored. Returns the result of the first action to return a...
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def get_csv_header( reviews_per_paper, num_similar, area_chairs=False, is_global=False ): """ Get the csv output header fields, based on the number of assigned and similar reviewers Args: reviews_per_paper (int): Number of reviews received by each paper num_similar (int): The number...
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def tobytes(s): """force_bytes(s) -> bytes Ensures the given argument is of type bytes Example: >>> force_bytes(b'abc') b'abc' >>> force_bytes('abc') b'abc' >>> force_bytes(1) Traceback (most recent call last): ... TypeError: Expecting a...
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import socket def is_server_alive(host, port): """ Attempts to connect to a given host and port. If the connection is successful then True is returned. Otherwise, False is returned. :param host: the target host name or ip address. :param port: the target port. :return: True if the connection ...
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import math def dist(p: list, q: list) -> float: """ Returns the Euclidean distance between points p and q. Tries to emulate Python 3.8's math.dist(p, q) function. Citation: https://docs.python.org/3/library/math.html :param p: A multi-dimensional (dimension >= 1) point in the form of a list :...
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def dataframe_series_summary(series_summaries: dict) -> dict: """Aggregate certain statistics from the series summary Args: series_summaries: mapping from series to summary Returns: A aggregated summary based on the statistics of individual series """ summary = {"na_count": 0, "n_v...
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def cpu_usage_for_process(results, process): """ Calculate the CPU percentage for a process running in a particular scenario. :param results: Results to extract values from. :param process: Process name to calculate CPU usage for. """ process_results = [ r for r in results if r['met...
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import ast def get_nth_argument_name(arguments: ast.arguments, n: int) -> str: """Return the name of the nth positional argument, or Ɛ if out-of-range.""" _arguments = arguments.args if len(_arguments) == 0: return "" if not (0 <= n < len(_arguments)): return "" return _argument...
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def _build_gcs_destination(config): """Builds a GcsDestination from values in a config dict. Args: config: All the user-specified export parameters. Will be modified in-place by removing parameters used in the GcsDestination. Returns: A GcsDestination containing information extracted from conf...
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def bytes_from(path): """ Return the bytes from a file. :param path: file path string """ with open(path, "rb") as fp: return fp.read()
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def get_drug_dcid(row): """Returns dcid of a drug. If the ChEMBL ID of the drug was not found, then a new dcid for the drug is created based on the pharmGKB id. """ if row['ChEMBL ID']: return 'bio/' + row['ChEMBL ID'] return 'bio/' + row['PharmGKB Accession Id']
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import hashlib def filehash(filepath): """Compute the hash of a file. Args: filepath (str): Path to the file. """ hasher = hashlib.md5() with open(filepath, 'rb') as f: hasher.update(f.read()) return hasher.hexdigest()
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import asyncio def synchronize_generator(async_generator, *args, **kwargs): """ Returns a synchronous generator from an asynchronous generator """ ag = async_generator(*args, **kwargs) async def consume_generator(stop_signal): r = await ag.asend(stop_signal) return r loop = ...
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def coverage(index_seq, segment_list, qseqseq): """ Coverage of an index_seq, which is just the ratio of the length of the concatenation to the length of the original string. """ return (segment_list[index_seq[-1]][2] - segment_list[index_seq[0]][1]) / len(qseqseq)
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def mk_scan_mapper(condition_map, dflt=None): """Make function implementing an if/elif/.../else logic from a {bool_func: x, ...} map""" def scan_mapping(x): for condition, then in condition_map.items(): if condition(x): return then return dflt return scan_mappin...
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def do_while_loop(printer, ast): """Prints "do {body} while (cond)".""" cond_str = printer.ast_to_string(ast["cond"]) body_str = printer.ast_to_string(ast["body"]) return f'do {body_str} while ({cond_str});'
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def fibonacci(n): """ Generate a list of fibonacci numbers up to and including n. """ result = [1, 1] if n <= 2: return result[0:n] counter = 2 while True: next_fib = result[counter-2] + result[counter-1] if next_fib > n: break result.append(next_f...
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def get_video_file_paths(input_dir): """From a directory, return a list of video file paths, sorted based on commonly used video file exstensions. Args: input_dir (Path): The folder in which we'll search for videos. Returns: List: Video file paths found in directory """ # Get ...
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import io def parse(stdin: io.TextIOWrapper) -> list: """ Parse the input into a list of tuples: string direction and int distance. """ return [ (line[0], int(line[1:])) for line in stdin.read().strip().splitlines() ]
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def cantor(a, b): """Cantor pairing function, used to give unique int name to each observation""" a = int(a) b = int(b) return (a + b) * (a + b + 1) / 2 + b
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def inputs_vocabulary(vocabulary): """Get the inputs vocabulary. Args: vocabulary: Vocabulary or (inputs_vocabulary, targets_vocabulary) tuple. Returns: a Vocabulary """ if isinstance(vocabulary, tuple): vocabulary = vocabulary[0] return vocabulary
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def convert_distance_to_weight(dist_matrix): """ Translate raw distance-to-edge data into weight using parabolic equation. Used to give higher priority to pixels located closer to an edge. :param dist_matrix: matrix of distances to edges from the distance transform :return: adjusted dist_matrix ...
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import inspect def GetFileAndLine(component): """Returns the filename and line number of component. Args: component: A component to find the source information for, usually a class or routine. Returns: filename: The name of the file where component is defined. lineno: The line...
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import re def unsupported_arguments(doc, args): """ Mark unsupported arguments with a disclaimer """ lines = doc.split("\n") for arg in args: subset = [ (i, line) for i, line in enumerate(lines) if re.match(r"^\s*" + arg + " ?:", line) ] if len(s...
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def geometric_series(common_ratio, number_of_images, first_term=1): """ This will provide the geometric series for the integration. Last values of the series has to be less than or equal to number of images ex: number_of_images = 100, first_term =1 common_ratio = 2, geometric_series = 1, 2, 4, ...
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def wrap(x, vmin, vmax): """Wrap a value x within bounds (vmin,vmax)""" return (x-vmin) % (vmax-vmin)+vmin
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def _match_stack(selector, stack): """Match stacks using selector as the comparison var. Strings prefixed with ^ will be treated as negative Args: selector (str|list[str]): String tokens or list used for matching stack (:obj:`stackformation.BaseStack`): stack used for comparison. Will match...
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def day2dekad(day): """Returns the dekad of a day. Parameters ---------- day : int Day of the date. Returns ------- dekad : int Number of the dekad in a month. """ if day < 11: dekad = 1 elif day > 10 and day < 21: dekad = 2 else: de...
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def calc_max_quant_value(bits): """Calculate the maximum symmetric quantized value according to number of bits""" return 2**(bits) - 1
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def enumerate_ids(locationlist): """For a given list of locations, give them all an ID""" counter = 1 for location in locationlist: location.insert(0,"LOCID%s" % (counter)) counter+=1 return locationlist
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def substitute_rpath(orig_rpath, topdir, new_root_path): """ Replace topdir with new_root_path RPATH list orig_rpath """ new_rpaths = [] for path in orig_rpath: new_rpath = path.replace(topdir, new_root_path) new_rpaths.append(new_rpath) return new_rpaths
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def clean_dict(target, keys): """Rebuild a new dictionary from requested keys. Args: target (dict): Dictionary to extract keys from. keys (list): List of keys to extract. If one key cannot be found in target, it will be ignored. Returns: dict: Dictionary with requested ...
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def is_set_policy(policy): """ Checks if the current policy action is a set action. """ return 'setIamPolicy' in policy['action'] and not 'metadata' in policy
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def least_larger(arr: list, idx: int) -> int: """ This function returns the index of the least number larger than the element at the given index, or -1 if there is no such index. """ if len(arr) < 0: return -1 my_element = [i for i in arr if i > arr[idx]] if len(my_element) > 0: return a...
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def get_yaml_version(fd, token): """ A YAML token is found, so see if the YAML version can be parsed. Parameters ---------- fd : GenericFile token : bytes The YAML token Return ------ yaml_version: tuple """ offset = fd.tell() while True: c = fd.read(1) ...
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def safe_dict(obj_or_func, **kwargs): """ Create a dict from any object with all attributes, but not the ones starting with an underscore _ Useful for objects or function that return an object that have no __dict__ attribute, like psutil functions. """ if callable(obj_or_func): res = obj_or_...
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def view_exists(spark_session, view_name): """Return True if the specified view exists""" try: _ = spark_session.read.table(view_name) return True except: return False
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def sum_all_but_dims(dims_to_keep, da): """Sum a xr.DataArray along all dimensions except those specified.""" dims_to_sum = [dim for dim in da.dims if dim not in dims_to_keep] return da.sum(dim=dims_to_sum)
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def pam4_decision(x,l,m,h): """produces pam4 symbol from analog voltage Parameters ---------- x : float the analog voltage l: float voltage threshold between 0 and 1 symbol m: float voltage threshold between 1 and 2 symbol h: float volt...
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def create_slack_attachment(fallback, color=None, pretext=None, author_name=None, author_link=None, author_icon=None, title=None, ...
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def length(segments): """Computes length of segments. Args: segments (numpy array or torch tensor): shape [N, 2] holding N segments. Returns: a numpy array (or torch tensor) with shape [N] representing segment length. Note: it works with time, it would be off...
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def report_status_cell(i): """Make and return the report_status cell at Column F.""" return "F{}".format(str(i))
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import math def angle(p): """ p = (x, y), return angle from y axis """ x, y = p p = x, -y a = math.pi / 2 - math.atan2(*reversed(p)) if a < 0: a += 2 * math.pi return a
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def _Pairs(data): """dictionary -> list of pairs""" keys = sorted(data) return [{'@key': k, '@value': data[k]} for k in keys]
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def calculate_calibrated_value(image_mean, vector): """ Solves the calibration equation that finds the optimal low bound value for the saturation and value. :param image_mean: the mean if the image of which :param vector: the dictionary containing the coefficients and group mean. Calcu...
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def edit_title(ax, text, prepend=False, append=False): """ Adds text to beginning or end of existing title on axes Args: ax (plt.Axes): Axes with title to edit text (str): Text to add to beginning or end of title prepend (bool): Prepend text (can't do both at same time) appe...
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import torch def logsumexp(x, dim=None, keepdim=False): """Numerically stable logsumexp. from https://github.com/pytorch/pytorch/issues/2591 Args: inputs: A Variable with any shape. dim: An integer. keepdim: A boolean. Returns: Equivalent of log(sum(exp(inputs), dim=...
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import decimal def format_coordinate(number: decimal.Decimal) -> str: """Returns decimal in the format required by task. 2.0000 -> 2 2.104 -> 2.1 """ return "{:.2f}".format(number).rstrip("0").rstrip(".")
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def errs_tab(n): """Generate list of error rates for qualities less than equal than n.""" return [10**(q / -10) for q in range(n + 1)]
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def _GetGcsPath(source, error_log): """Get the path to the folder on Google cloud storage.""" batch_sim_bucket = 'gs://makani/batch_sim/' gcs_folder = batch_sim_bucket + source if not error_log: gcs_folder += '/h5_logs/' else: gcs_folder += '/error/' return gcs_folder
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def _progress_bar(count, total): """ Get a simple one-line string representing a progress bar. Arguments: count (int): Current count. Starts at 0. total (int): Total count. Returns: pbar_string (str): The string progress bar. """ bar_len = 60 filled_len = int(round(ba...
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def get_depth(string): """Calculates amount of whitespaces leading the given string and returns int""" # expected input (example): # string = [' 09140 Cellular Processes'] # # expected output (example): # depth = 13 depth = len(string) - len(string.lstrip(' ')) return depth
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import itertools def list_product(*args): """ Generate a list containing all combinations of the input lists. Outputs a list rather than an annoying generator. Parameters ---------- *args : list, tuple Returns ------- list Combined list. """ return list(itertools....
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def get_classes(classes_path): """ Loads classes from text file Input: classes_path (string) - The path of classes Output: class_names (list) - Class names in list format class_mappings(dict) - Dictionary mapping class names with id e..g {"aeroplan": 4, "apple":...
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from typing import Dict from typing import Callable def transform(data: Dict, *modifiers: Callable[[Dict], None]) -> Dict: """ Generic functions that allows to generate new dictionary by applying any number of modifications on the input dictionary :param data: original dictionary :param modifiers...
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def resize_image(image, resize_width, resize_height): """ Resizes image to the given dimensions in pixels. Args: image (Image): The image to be resized. resize_width (int): The width in pixels of the new image. resize_height (int): The height in pixels of the new image. Returns: ...
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def strip(cc): """Strip all non numeric characters. @type cc: str @param cc: String. @rtype: str @return: Stripped string. """ return ''.join([c for c in cc if c.isdigit()])
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def normalize_column_to_midi_range(column, target_range, target_min_value): """ Normalizes the values to the values range used by the MIDI format :param column: A list with the values that should be sonified :param target_range: The target range :param target_min_value: The target minimum value ...
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def optimizer_kwargs_gf(parsed_args): """ Build kwargs for optimizer in optimizer.py from the parsed command-line arguments. """ return { 'optim': parsed_args.optim, 'lr': parsed_args.lr_gf, 'weight_decay': parsed_args.weight_decay, 'momentum': parsed_args.momentum, ...
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def clean_doc(doc): """Remove spurious end-lines and such from the doc-string specified in the comment preceding the C++-python functions. """ # Replace regular enter (i.e. mere comment formatting in cpp file) # with space doc = doc.replace("\n", " ") # The removal can cause a "hard enter"...
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def getDescribe(series, percentiles = [.25, .5, .75]): """Get describe of series Args: series (Series): data series percentiles: the percentiles to include in the output Returns: Series: the describe of data include mean, std, min, max and percentiles """ d = series.describ...
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def calculate_tax(price, tax_rate): """Calculates tax given a price and tax rate""" total = price + (price*tax_rate) my_price = 10000 print("my_price (inside function) =", my_price) return total
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def ultimoNome(string: str) -> str: """ Devolve a última palavra de uma string (sobrenome) Parameters ---------- string : str texto (nome completo) Returns ------- string : str texto (sobrenome) """ string = string.replace('.','').replace(',',' ').split(...
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import textwrap def catalog_file(tmpdir_factory): """Prepare a single-entry catalog that points to actual data on pangaea.de.""" catalog_str = textwrap.dedent( """ metadata: version: 1 plugins: source: - module: intake_pangaeapy sources: ...
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