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def get_input_shape(inputs): """Gets the shape of the input excluding the batch size""" return tuple(inputs.size())[1:]
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def dual_averaging(t0=10, kappa=0.75, gamma=0.05): """ Dual Averaging is a scheme to solve convex optimization problems. It belongs to a class of subgradient methods which uses subgradients (which lie in a dual space) to update states (in primal space) of a model. Under some conditions, the averages...
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from typing import Dict from typing import Tuple def deserialize_fh(doc: Dict) -> Tuple[str, str]: """Get the file identifier and optional target path from an input file argument. Parameters ---------- doc: dict Input file argument value. Returns ------- string, string ""...
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from typing import Tuple from typing import Dict from typing import Optional def _prune_tree( tree: Tuple[Dict, Dict, Optional[str]] ) -> Tuple[Tuple[Dict, Dict, Optional[str]], int]: """ Remove any branches that don't have any URLs under them. :param tree: branch to prune :return: A 2-tuple c...
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def air2vac(air): """Convert from in-air wavelengths to vacuum wavelengths. Based on Allen's Astrophysical Quantities. :param air: The in-air wavelengths. :returns vac: The corresponding vacuum wavelengths. """ ss = 1e4 / air vac = air * (1 + 6.4328e-5 + 2.94981e-2 / (146 ...
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import re def count_n_reps_or_n_chars_following(text, n=1, char=""): """ Counts how often characters are repeated for n times, or followed by char n times. text: UTF-8 compliant input text n: How often character should be repeated, defaults to 1 char: Character which also counts if repeated n...
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def safe_attribute_compare(this, that, attribute_name): """Compares the named attribute on the objects this and that. The attribute need not exist on either object. Returns True if -- (a) Neither object has the attribute, OR (b) Both objects have the attribute and the value of the attr is equ...
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def justify_indel(start, end, indel, seq, justify): """ Justify an indel to the left or right along a sequence 'seq'. start, end: 0-based, end-exclusive coordinates of 'indel' within the sequence 'seq'. Inserts denote the insertion point using start=end and deletions indicate the deleted re...
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def devilry_grade_short(assignment, points): """ Renders a grade as in its shortest form - no information about passed or failed, only the grade text (E.g.: "passed", "8/10", "A"). Args: assignment: An :class:`devilry.apps.core.models.Assignment` object. points: The points to render the...
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def post_process_human_data(human_data): """Remove unwanted space and solves double shad(ཉིས་ཤད་) split cases Args: human_data (str): human segmented data Returns: str: clean human segmented data """ human_data = human_data.replace('། །', '།།') human_data = human_data.replace(...
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def ensure_three_decimal_points_for_milliseconds_and_replace_z( datetimestring: str, ) -> str: """ To convert SciHub Datetimes to Python Datetimes, we need them in ISO format SciHub Datetimes can have milliseconds of less than 3 digits therefore we pad them with zeros to the right to make 3 digits, ...
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from sympy.ntheory.modular import crt def _decipher_rsa_crt(i, d, factors): """Decipher RSA using chinese remainder theorem from the information of the relatively-prime factors of the modulus. Parameters ========== i : integer Ciphertext d : integer The exponent component ...
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import ipaddress def get_bridge_domain(aci_subnets, eip): """ function to return a bridge domain name from tenant, app and end device IP :param aci_subnets: List of aci subnets :param eip: ACO end device IP :return: Bridge domain name """ for bd_name, networks in aci_subnets.items(): ...
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def deep_merge(first: dict, second: dict) -> dict: """ Dict deep merge function Merge recursive second dict in first and return it >>> deep_merge({},{}) {} >>> deep_merge({'key': 'value'}, {'key': 'value'}) {'key': 'value'} >>> deep_merge({'key': 'value'}, {'key': 'new_value', 'second_k...
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from typing import Union from pathlib import Path from typing import Dict from typing import List from typing import Tuple import re def parse_rules(filename: Union[str, Path]) -> Dict[str, List[Tuple[str, int]]]: """ Parse the input text into a nice formatted set of rules. We assume: * Each type of b...
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from typing import List from typing import Tuple def process_results(search_results: List) -> Tuple[dict, int]: """ Prints the search results in an appropriate format and maps them in a dictionary. """ print("Showing the most relevant fetched results.\n") result_index = {} for i, show in en...
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def parse_key_value_config(config_value): """ Parses out key-value pairs from a string that has the following format: key: value, key2: value, key3: value :param string config_value: a string to parse key-value pairs from :returns dict: """ if not config_value: return {} ...
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def create_intersection(whole_dict, sub_dict): """ Reduces a dictionary to have the same keys as an another dict. :param whole_dict: dict, the dictionary to be reduced. :param sub_dict: dict, the dictionary with the required keys. :return: dict, the reduced dict. """ reduced_dict = {} fo...
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def empty_cells(keyword): """``empty-cells`` property validation.""" return keyword in ('show', 'hide')
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def get_runner_image_name(base_images_project, test_image_suffix): """Returns the runner image that should be used, based on |base_images_project|. Returns the testing image if |test_image_suffix|.""" image = f'gcr.io/{base_images_project}/base-runner' if test_image_suffix: image += '-' + test_image_suffix ...
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import json def GetError(error): """Returns a ready-to-print string representation from the http response. Args: error: A string representing the raw json of the Http error response. Returns: A ready-to-print string representation of the error. """ status = error.response.status code = error.res...
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def get_swap_targets(node): """ All pairs of columns that do not have the same types in every cell """ pairs = [] n_col = node.table.n_col for i in range(n_col): col_i = node.table.get_col(i) for j in range(i + 1, n_col): col_j = node.table.get_col(j) same = True...
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def get_weights(G): """ Given a graph G, returns a list of weights. If the graph is unweighted, returns a list of 1s the same length as the number of edges. """ try: # asssumes weight as an attribute name means graph is weighted. weights = G.es['weight'] except KeyError: ...
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def is_hcj(character): """Test if a single character is a HCJ character. HCJ is defined as the U+313x to U+318x block, sans two non-assigned code points. """ return 0x3131 <= ord(character) <= 0x318E and ord(character) != 0x3164
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def get_sequential(x, layers): """Creates a sequential chain from given layers. """ for layer in layers: x = layer(x) return x
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def increment_dictionary_with_dictionary(dict_a, dict_b): """ Function to add the values from one dictionary to the values from the same keys in another. Args: dict_a: First dictionary to be added dict_b: Second dictionary to be added Return: The combined dictionary """ ...
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def load_fs_lut(filename): """ Reads a label lookup-table from file. File is expected to define the anatomical name and color for each label ID. Each line in the file should have the format: ``` ID AnatomicalName R G B ``` Parameters: filename (str): File to load. Ret...
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from typing import Iterable from typing import Sequence from pathlib import Path from typing import Optional import csv def write_list_to_csv( data: Iterable[Sequence], file_path: Path, parents=False, exist_ok=True, has_header: bool = True, headers: Optional[Sequence[str]] = None, ) -> int: ...
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def get_db_path(spider_dir, db_id): """ Return path to SQLite database file. Args: spider_dir: path to SPIDER benchmark db_id: database identifier Returns: path to SQLite database file """ return f'{spider_dir}/database/{db_id}/{db_id}.sqlite'
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def normalize(X, m, s): """ Normalizes (standardizes) a matrix X is the numpy.ndarray of shape (d, nx) to normalize d is the number of data points nx is the number of features m is a np.ndarray of shape (nx,) that contains the mean of features of X s is a np.ndarray of shape (nx,)...
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def get_input(question, answers, default=None): """Get User Input. Args: question (str): Question to ask user (passed directly to input()) answers (str[]): List of possible answers. Must be all lowercase. default (str, optional): If specified, the answer to have if none is supplied. Def...
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def read_file_contents(path): """ Reads the contents of the given file. Returns: A str, the contents of the given file. """ with open(path) as file_handle: return file_handle.read()
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def fixed_asset_turnover(revenue, average_net_fixed_assets): """Computes fixed asset turnover. Parameters ---------- revenue : int or float Revenue average_net_fixed_assets : Average net fixed assets in period Returns ------- out : int or float Fixed asset turno...
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def empty_cache(max_T, labeling_with_blanks): """Create empty cache.""" return [[None for _ in range(len(labeling_with_blanks))] for _ in range(max_T)]
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import torch def euler_matrix(ai, aj, ak, repetition=True): """Return homogeneous rotation matrix from Euler angles and axis sequence. ai, aj, ak : Euler's roll, pitch and yaw angles Readapted for Pytorch: some tricks going on """ si, sj, sk = torch.sin(ai), torch.sin(aj), torch.sin(ak) ci, cj...
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def print_targets(targets, width, indent=0): """Print a list of targets.""" content = "" for target in targets: content += " " * indent content += target.print_name(width) content += f"{target.print_help()}\n" return content
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def mangle_name(name, prefix='', postfix=''): """ "Mangles" *name* by putting a *prefix* and *postfix* around it. :param name: name to mangle :param prefix: *optional* - defaults to '' - prefix to put at the beginning of the name to mangle it :param postfix: *optional* - defaults to '' - postfix...
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import re def compress(text): """ Delete all whitespace characters except those followed by an upper or lowercase letter. :param text: The text to be compressed. :return: The compressed text. """ return re.sub(r'\s+(?![a-zA-Z])', '', text)
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import collections def get_duplicates(iterable): """Return a set of the elements which appear multiple times in iterable.""" counter = collections.Counter(iterable) return {key for key, count in counter.items() if count > 1}
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def rgb_to_hex(rgb): """ Convert RGB tuple to hex triplet """ rgb = tuple([bit*256 for bit in rgb]) # (0,1) -> (0, 256) return'#%02x%02x%02x' % rgb
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def user_bool(prompt: str) -> bool: """Get a boolean from the user""" lookup = {"y": True, "yes": True, "n": False, "no": False} options = "[y/n]: " value = input(f"{prompt} {options} ").lower().strip() while True: if value in lookup: return lookup[value] print(f"Ple...
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def _create_neighbor_dict(codons): """ Create minimum neighbor distances for each amino acid given the genetic code. Parameters ---------- codons : dict dictionary mapping codons to single-letter amino acid codes Returns ------- neighbor_dict : dict dictionary mappi...
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import itertools def enumerate_sqs(structure, subl_model, scale_volume=True, skip_on_failure=False): """ Return a list of all of the concrete Structure objects from an abstract Structure and concrete sublattice model. Parameters ---------- structure : AbstractSQS SQS object. Must be abstra...
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def filter_true(c): """Filter solved conflicts""" return c.is_resolved is True
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def ncnv(self, kstop="", dlim="", itlim="", etlim="", cplim="", **kwargs): """Sets the key to terminate an analysis. APDL Command: NCNV Parameters ---------- kstop Program behavior upon nonconvergence: 0 - Do not terminate the analysis if the solution fails to converge. 1...
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def StripDoubleUnderscorePrefixes(text: str) -> str: """Remove the optional __ qualifiers on OpenCL keywords. The OpenCL spec allows __ prefix for OpenCL keywords, e.g. '__global' and 'global' are equivalent. This preprocessor removes the '__' prefix on those keywords. Args: text: The OpenCL source to p...
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def digits_sum(n): """ Returns sum of digits of number n. For example: digits_sum(245) = 2 + 4 + 5 :param n: n :return: sum of digits """ return sum(int(ch) for ch in str(n))
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def check_shots_vs_bounds(shot_dict, mosaic_bounds, max_out_of_bounds = 3): """Checks whether all but *max_out_of_bounds* shots are within mosaic bounds Parameters ---------- shot_dict : dict A dictionary (see czd_utils.scancsv_to_dict()) with coordinates of all shots in a .scancsv file...
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def pubkey_from_point_to_bytes(x: int, y: int, compressed: bool = True) -> bytes: """ Constructs pubkey from its x y coordinates """ x_bytes = x.to_bytes(32, byteorder='big') y_bytes = y.to_bytes(32, byteorder='big') if compressed: parity = y & 1 return (2 + parity).to_bytes(1, byteorder...
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import random def random_list(xs): """ Return a random elements of a list. """ return random.choice(xs)
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def ppebwr_round_probs(L): """ Return 'round probabilities' for use in ppebwr method. These are just scaled precinct sizes. """ V = float(sum([x[0] for x in L])) return [x[0]/V for x in L]
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def head(iterable): """ Gets the first element of the iterable. :param iterable: A non-empty iterable. If it is empty a StopIteration error will be raised :type x: iterable **(A)** :returns: A """ it = iter(iterable) return next(it)
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def get_column(square_size, square, i): """Returns an i-th column of a square.""" expected_modulo = i % square_size col = [] for i, item in enumerate(square): if i % square_size == expected_modulo: col.append(item) return col
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def format_date_c19(date_in): """ Formats "m/d/y" to "yyyymmdd" """ month, day, year = date_in.split('/') return '20%s%02i%02i' % (year, int(month), int(day))
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def _bounds_vars_for_variable(ncfile, ncvar): """Return a list of names for a variable and its bounds""" variables = [ncvar.varname] if "cell_methods" not in ncvar.attrs: # no cell methods, so no need to look for bounds return variables # [cell methods] is a string attribute comprisin...
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def format_time(t, format_spec='dhms'): """ Return a formatted time string describing the duration of the input in seconds in terms of days,hours,minutes and seconds. """ if format_spec == '': sb, mb, hb, db = True, True, True, True else: sb = 's' in format_spec mb = 'm' in format_spec hb = 'h' in format...
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def sumBase(n: int, k: int) : """ Given an integer n (in base 10) and a base k, return the sum of the digits of n after converting n from base 10 to base k. After converting, each digit should be interpreted as a base 10 number, and the sum should be returned in base 10. TC : O(N) SC : O(1) n : int (integer base 10...
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def _to_hours_mins_secs(time_taken): """Convert seconds to hours, mins, and seconds.""" mins, secs = divmod(time_taken, 60) hours, mins = divmod(mins, 60) return hours, mins, secs
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def window_decay(d: float, a: float): """ Only considers customers that are at most distance 'a' from the current customer. f(d) = 1/[d < a] :param d: distance (non-negative finite value) :param a: maximum distance :return: decay """ return 1 if d < a else 0
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def _progress_bar(count, total): """ Get a simple one-line string representing a progress bar. Arguments: count (int): Current count. Starts at 0. total (int): Total count. Returns: pbar_string (str): The string progress bar. """ bar_len = 60 filled_len = int(round(ba...
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from functools import reduce def vec_sum(vec): """Return the sum of the elements of a vector.""" return reduce(lambda x, y: x + y, vec)
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def normalize_commit_message(commit_message): """ Return a tuple of title and body from the commit message """ split_commit_message = commit_message.split("\n") title = split_commit_message[0] body = "\n".join(split_commit_message[1:]) return title, body.lstrip("\n")
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import pickle def load_network(fpath): """ Utility function to load network found at file path `fpath`. """ with open(fpath, "rb") as f: network = pickle.load(f) return network
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def get_gas_color_list(gas_list, gas_color_dict=None): """Map the gas name to preset color in gas_color_dict. Use the same color for the gas to make it consistence Args: gas_list: a name of the gas gas_color_dict(optional): color dictionary to map the gas to Returns: list a li...
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def colored_neighbours(pattern, index, color): """ Count the number of neighbours with the color :param pattern: Pattern :param index: Index of a Polygon :param color: color :return: Int """ polygon = pattern.list_polygons[index] count = 0 for neigh_index in polygon.list_neig...
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from itertools import product def listCombination(lists) -> list: """ 输入多个列表组成的列表,返回多列表中元素的所有可能组合 :param lists: 多个列表组成的列表 :return: 所有元素可能的组合 """ result = [] resultAppend = result.append for i in product(*lists): resultAppend(i) return result
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def add_to_start(solutions, add_num): """The current function gets a list of lists and number. The function will add all sub-lists into an updated list with each sub-list added at the beginning of the list the number the function is gets""" final_list = [] if solutions is None: return None ...
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def execute_move(board, move): """Executes a move on a board and gives new board as output.""" from_square = move[0] to_square = move[1] moving_piece = board[from_square[0]][from_square[1]] board[to_square[0]][to_square[1]] = moving_piece board[from_square[0]][from_square[1]] = "" return...
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def construct_chip_dict(gameweeks, chip_gameweeks): """ Given a dict of form {<chip_name>: <chip_gw>,...} where <chip_name> is e.g. 'wildcard', and <chip_gw> is -1 if chip is not to be played, 0 if it is to be considered any week, or gw if it is definitely to be played that gw, return a dict { <...
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from typing import List def di_borders(di: List[float]) -> List[float]: """Function to return the list of borders based on the directional index vector. Threshold chosen at 1.96 to have a p-value below 0.05. As the directional index is a t-value, a value below -1.96 or above 1.96 will have a p-value b...
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import collections def parse_vmx(path): """Parse the virtual machine configuration (.vmx) file and return an ordered dictionary. """ vmx = collections.OrderedDict() with open(path) as the_file: for line in the_file: line = line.strip().split('=', 1) if len(line) ...
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def apply_transformations(transformations, lines): """Applies a list of transformations to a list of lines, generating a list of 'frames'. A 'frame' in this case is a list of lines each represented as a dual number ratio.""" frames = [] nframes= len(transformations) for i in range(nframes): ...
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import re def is_valid_node_name(name): """ Return True if the string is a valid Python identifier in lower ASCII range, False otherwise. The regular expression match pattern is r"^[a-z_][a-z0-9_]*". """ return isinstance(name, str) and name.isidentifier() and re.fullmatch(r"^[a-z_][a-z\d_]*", na...
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import importlib def get_class_from_qualname(name): """ Resolve a fully qualified class name to a class, attempting any imports that need to be done along the way. :raises: ImportError or AttributeError if we can't figure out how to import it """ tokens = name.split(".") module_name = "."....
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def missing_layers(dm_layers, ds_layers): """Find missing datamodel-layers in datasets.""" layers = [i.lower() for i in ds_layers] layers = [i for i in dm_layers if i not in layers] return layers
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def title_for(title): """ Create a title from a underscore-separated string. """ return title.replace("_", " ").capitalize()
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def format_result(result, info): """ Formats the given resultset. @param result: the result to format. @param info: return only the header information. """ if info: return '\n'.join([ 'Domain: ' + str(result.domain), 'Request ID: ' + str(result.request_id), ...
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import hashlib def file_checksum(fname): """ calculates the md5 checksum of a file and returns it as hex string (0-f). warning: reads the entire file into memory. see https://stackoverflow.com/a/3431835 in case you need a memory-efficient variant... """ return hashlib.md5(open(fname, 'rb').rea...
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def base(code): """ Return letter code for integer encoded base """ return "ACGTN-"[code]
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import socket def get_ip_using_standard_if(host='8.8.8.8'): """ Gets the ip of the 'standard interface' Source: https://stackoverflow.com/a/7335145 Args: host (str): optional ip of a host to connect to. Default is '8.8.8.8' Returns: own ip address on standard interface """ s = so...
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def table_publish_format(name, timestamp, table, data): """ Return a dictionary for use in the results publish""" table_key = str(str(name) + '&' + str(timestamp)) return [table_key, [table, data]]
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import hashlib def _GenerateTokenHash(token): """Returns a MD5 hash of a token for integrity checking.""" return hashlib.md5(token).hexdigest()
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def findMaxElementsInDict(dictToSearch: dict[str, int]) -> list[str]: """Given dictionary in form <str: int> find strings with highest int value.""" maxOccurences = max(list(dictToSearch.values())) return [key for key, value in dictToSearch.items() if value == maxOccurences]
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def isnumber(x): """Is x a number?""" return hasattr(x, '__int__')
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def _is_cluster_done(cluster): """Return True if the given cluster is done running.""" return bool(cluster['Status']['State'] == 'TERMINATING' or cluster['Status']['Timeline'].get('EndDateTime'))
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def smooth_array(input, smooth): """Smooth array using exponential moving average Args: input: input data smooth: smooth factor, 0<=smooth<1 Returns: Smoothed array """ return input.ewm(alpha=(1 - smooth)).mean()
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import sqlite3 def open_sqlite(input_db): """Open a SQLite database Args: input_db: Path to a SQLite database to open Returns: A connection to a SQLite database """ print("Provided Database: {}".format(input_db)) return sqlite3.connect(input_db)
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def id(x): """Get the memory block address of an array.""" return x.__array_interface__['data'][0]
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def _define_tabledict_keys(header, fields, separator): """ Define the keys for the tabledict dictionary. Note: this function is only used by parse_table_from_file(). :param header: header string. :param fields: header content string. :param separator: separator character (char). :return: ta...
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def testdat(testdir): """Path to the testdat directory""" return testdir / "testdat"
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def _convert_title(title: str) -> str: """Converts a title to a filename that can be used.""" blacklist = ['\\', '/', ':', '*', '?', '"', '<', '>', '|', '\0'] download_prefix = 'Download ' title = title[len(download_prefix):] title = "".join(c for c in title if c not in blacklist) return title
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def indent(txt, n=4, s=" "): """Text indenter. Args: txt (:obj:`str`): The text to indent. n (:obj:`str`, optional): Number of s to indent txt. Defaults to: 4. s (:obj:`str`, optional): Char to use for indent. Defaults to: " ". Returns: (...
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from typing import List def compare_lists(local_list: List[str], remote_list: List[str]) -> List[str]: """ Comapre local and remote list of files and return the list of local files not stored in remote database. :param local_list: list of names of local files :param remote_list: list of names of remot...
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def sanitized(*args): """ Returns a sanitized string uniquely determined by the supplied args, any of which can be a string or C{None}. C{None} args are ignored. Any spaces within an arg are removed. The text of multiple args is joined with an underscore. For example, supplying "Santa Fe" and "...
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def get_multiple_ids_string(queryset): """Returns a string of ids from a queryset for use in a SQL query""" querystring = "" for counter, modobj in enumerate(queryset): querystring += ", %s" % modobj.id if counter > 0 else "%s" % modobj.id return querystring
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def is_bool_or_none(x): """Tests if something is a boolean or None.""" return (x is None) or isinstance(x, bool)
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import re def validate_job_name(job_name: str) -> bool: """ EMR job name pattern from: https://docs.aws.amazon.com/emr/latest/APIReference/API_RunJobFlow.html#EMR-RunJobFlow-request-Name """ return re.compile(r"^[\u0020-\uD7FF\uE000-\uFFFD\uD800\uDBFF-\uDC00\uDFFF\r\n\t]*$").match(job_name) is not Non...
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def extractWholeLine(buf, isFirstLine): """ Return the next complete line of input if available. ``buf`` is the accumulated input buffer received from decode-978. The goal is to extract complete lines from this data and return them as output. ``buf`` is altered to reflect the line being removed. We are als...
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def auth_required(function): """ Decorator to check the agent is authenticated. Unlike "login_required", if the agent is not authenticated it fails with a 401 error instead of redirecting. """ def wrap(request, *args, **kwargs): # if request.user.is_authenticated(): return funct...
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def identity(x): """Return its argument""" return x
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