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def round_digits( v: float, num_digits: int = 2, use_thousands_separator: bool = False ) -> str: """ Round digit returning a string representing the formatted number. :param v: value to convert :param num_digits: number of digits to represent v on None is (Default value = 2) :param ...
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import click def format_files(filenames): """Formats a list of file names as terminal output.""" return "\n".join([click.format_filename(fn) for fn in filenames])
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from typing import Tuple from typing import List def _parse_prefix(prefix: str) -> Tuple[str, List[int]]: """Parse a --muscle-prefix argument. This is like a Reference, but not quite, because the initial identifier may be omitted. That is, [1][2] is also a valid prefix. This parses an initial id...
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def has_finished(directory): """Returns True if the experiments in this directory appear to have finished. """ if (directory / "result.txt").exists(): return True if (directory / "evaluation.json").exists(): return True
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def moyenne_trois_nb(a : float, b : float, c : float) -> float: """Retourne la moyenne arithmétique des trois nombres a, b et c. """ return (a + b + c) / 3.0
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def __pydonicli_declare_args__(var_dict): """ Limit a dictionary, usually `locals()` to exclude modules and functions and thus contain only key:value pairs of variables. """ vars_only = {} for k, v in var_dict.items(): dtype = v.__class__.__name__ if dtype not in ['module', 'fun...
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def ceildiv(a, b): """Returns the ceiling of a / b, equivalent to math.ceil(a / b)""" return (a + b - 1) // b
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import math import random def optimizar(dominio, temperatura = 10e32, tasa_enfriamiento = 0.95): """Algoritmo de optimización estocástica simulated annealing. Entradas: dominio (Dominio) Un objeto que modela el dominio del problema que se quiere aproximar. temperatura (float/int) Tem...
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def _get_ent_parameters(ent): """Gathers float and boolean parameters for the given entity. """ param_ids = type(ent).float_ids + type(ent).bool_ids return {param_id: getattr(ent, param_id) for param_id in param_ids}
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def clean_invalid(df, flag='flag'): """ Remove rows where flag is True. Is `flag` is not in the columns, return the same dataframe. Parameters ---------- flag : str Column used as flag. Default if `flag`. """ df_new = df.copy() _meta = df._metadata if flag in...
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def run_result_key_to_result_summary_key(run_result_key): """Returns the TaskResultSummary ndb.Key for this TaskRunResult.key. """ assert run_result_key.kind() == 'TaskRunResult', run_result_key return run_result_key.parent()
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import warnings def compute_accuracy(true_positives, n_ref, n_est): """Compute accuracy metrics. Parameters ---------- true_positives : np.ndarray Array containing the number of true positives at each time point. n_ref : np.ndarray Array containing the number of reference frequenc...
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def _find_closing_brace(string, start_pos): """Finds the corresponding closing brace after start_pos.""" bracks_open = 1 escaped = False for idx, char in enumerate(string[start_pos:]): if char == '(': if not escaped: bracks_open += 1 elif char == ')': ...
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def _to_list(x, n): """Converts x into list by repeating it n times. If x is already a list and it has length n, returns x. Else, if x is a list and has different length, raises ValueError.""" if isinstance(x, list): if len(x) != n: raise ValueError( '''If list is pas...
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def _get_lock_speed(postgame, de_data): """Get lock speed flag.""" if de_data is not None: return de_data.lock_speed if postgame is not None: return postgame.lock_speed return None
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def build(name, builder): """Wrapper to turn (name, ctx) -> val method signatures into (ctx) -> val.""" return lambda ctx: builder(name, ctx)
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def rectangle_intersects(recta, rectb): """ Return True if ``recta`` and ``rectb`` intersect. >>> rectangle_intersects((5,5,20, 20), (10, 10, 1, 1)) True >>> rectangle_intersects((40, 30, 10, 1), (1, 1, 1, 1)) False """ ax, ay, aw, ah = recta bx, by, bw, bh = rectb return ax <= ...
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def pop_target(df, target_col, to_numpy=False): """Extract target variable from dataframe and convert to nympy arrays if required Parameters ---------- df : pd.DataFrame Dataframe target_col : str Name of the target variable to_numpy : bool Flag stating to convert to num...
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import math def haversine(lon1, lat1, lon2, lat2): """ Calculate the great circle distance between two points on the earth (specified in decimal degrees) """ # convert decimal degrees to radians lon1, lat1, lon2, lat2 = map(math.radians, [lon1, lat1, lon2, lat2]) # haversine formula ...
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import torch def qzCx_sample(params): """ Sample from posterior q(z|x). Assume normal with diagonal covariance. Params: [B, LD, 2] Expect mu = params[..., 0] logvar = params[..., 1] """ mu = params.select(-1, 0) logvar = params.select(-1, 1) sigma_sqrt = torch.exp(0.5...
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def apply_tf(data, tf): """Apply function `tf` (transformation function) if specified and return result. Return unmodified data in other case""" if tf: return tf(data) else: return data
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def lines_to_list(list, columns, delimiter): """ convert a list of lines read from a file to a list of list by specify the number of columns and the delimiter parameters: list: list, lines returned by open_text() columns: integer, number of columns. delimiter: the delimiter to split a line "...
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def _generate_output_dataframe(data_subset, defaults): """ Generates an output dataframe from the given subset of user-provided data, the given column names, and the given default values. Parameters ---------- data_subset : DataFrame A DataFrame, usually from an AssetData object, ...
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def try_open_handle_file(filename: str) -> str: """Try to open & read a file. Panic with a helpful error message if the file cannot be found or opened. :param filename: the filename of the file to open :returns: the body of the file, if successful """ try: with(open(filename)) as f: ...
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def _format_float(input_float): """ Takes a float and returns a formatted String :param input_float: Floating point number :return: String from a floating point number, rounded to two decimals """ rounded = round(input_float, 2) as_string = str(rounded) return as_string
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def sum_rec(nums): """ Returns the sum of a list of numbers using recursion Examples: >>> sum_rec([3,1,4,1,5,9,2,6,5]) 36 >>> sum_rec(range(101)) 5050 >>> sum_rec(range(901)) 405450 >>> sum_rec([x**3 - 2*x**2 + x - 13 for x in range(901)]) 16...
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def choose(n, r): """ Returns: How many ways there are to choose a subset of n things from a set of r things. Computes n! / (r! (n-r)!) exactly. Returns a python long int. From: http://stackoverflow.com/questions/3025162/statistics-combinations-in-python """ assert n >= 0 assert 0 <= r <= ...
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import time, psutil import warnings def usage_log(pid, interval=1): """Regularly write resource usage to stdout.""" # local imports make function self-sufficient if psutil.MACOS: warnings.warn('Disk I/O stats are not available on MacOS.') p = psutil.Process(pid) def get_io(): if...
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def parse_csv_line(line): """ Splits a line of comma seperated values into a list of values. Removes leading and trailing quotes if there are any. """ parsed_line = [] for x in line.split(","): if x[0] == "\"" and x[-1] == "\"": x = x[1:-1] parsed_line.a...
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import copy def merge_id_dicts(dicttuple): """ Merges two id dictionary (efficiently). Args: dicttuple (tuple): Tuple of two id dictionaries. Returns: dict: New merged dictionary """ dict1, dict2 = dicttuple new = copy.deepcopy(dict1) for key, value in dict2.items(): new.setdefault(key, []).extend(val...
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def _dict_iteritems(dictionary): """Get an iterator or view on the items of the specified dictionary. This method is Python 2 and Python 3 compatible. """ try: return dictionary.iteritems() except AttributeError: return dictionary.items()
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def is_number(s): """ check if a string represents an integer or float number parameter -------- s: a string return ------ return True iff S represents a number (int or float) """ try: float(s) return True except ValueError: return False
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from typing import Mapping from typing import Optional from typing import Dict def offsets_to_slices( offsets: Mapping[str, int], sizes: Mapping[str, int], base: Optional[Mapping[str, int]] = None, ) -> Dict[str, slice]: """Convert offsets into slices with an optional base offset. Args: offsets: ...
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def generateD3Object(wordCounts, objectLabel, wordLabel, countLabel): """ Generates a properly formatted JSON object for d3 use. Args: objectLabel: The label to identify this object. wordLabel: A label to identify all "words". countLabel: A label to identify all counts. Returns...
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def parse_generic(data, key): """ Returns a list of (potentially disabled) choices from a dictionary. """ choices = [] for k, v in sorted(data[key].iteritems(), key=lambda item: item[1]): choices.append([v, k]) return choices
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def ret2dict(estimationresult): """ Convert the estimationresult to a single dictionary of key/value pairs. The estimationresult is a list of dicts, where each dict corresponds to a head and has a `task_name` key. The return value is a merged dict which has all keys prefixed with the task name and the ...
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def make_response(data): """ Creates a 200-status JSON response with the provided data and returns it to the caller :data the data to include in the response """ response = { "meta": { 'status': 200 }, "data": data } return response
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import requests def get_status_code(host, path="/", auth=None): """ This function retreives the status code of a website by requesting HEAD data from the host. This means that it only requests the headers. If the host cannot be reached or something else goes wrong, it returns None instead....
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def fwd(coeffs, x, y): """ Transforms projected coordinates from the Old Greek datum to GGRS87. Params: coeffs (float sequence): the 12 coefficients of the current Hatt map block [A0...B0...] x, y (floats): Easting, Northing Hatt coordinates of a point Returns: (float tuple): Easting, Northing GGRS87 coordinat...
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import re def sanitize_id(x): """ Sanitize an ID similar to github_sanitize_id, but with the following differences: * no downcasing * dots (.) are replaced with hyphens (which helps Python module namespaces look better) """ return re.sub(r'[^-\w ]', '', x.replace('.', '-'), re.U)....
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def get_max_image_dimensions(img_list): """Find the maximum width and height of all images Parameters ---------- img_list : list List of images Returns ------- max_wh : tuple Maximum width and height of all images """ shapes = [img.shape[0:2] for img in img_list] ...
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import re def _convert_number_string(number_string): """ Function to convert mixed number character strings to a number. Mapping: ``{'K': 1000, 'M': 1000000}`` Parameters ---------- number_string : str Number string to be mapped Returns ------- number : int or float ...
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import torch def local_to_global(R, t, p): """ Description: q <- Rp + t Args: R: (N, L, 3, 3). t: (N, L, 3). p: Local coordinates, (N, L, ..., 3). Returns: q: Global coordinates, (N, L, ..., 3). """ assert p.size(-1) == 3 p_size = p.size() N,...
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def tokenizer(sentence): """Split header text to tokens, add newline symbols""" return " \n ".join(sentence.split("\n")).split(" ")
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def aggregate_hourly(feature_df, aggs=["mean", "std"]): """Aggregates features to the floor of each hour using mean and standard deviation. e.g. All values from "11:00:00" to "11:59:00" will be aggregated to "11:00:00". """ # group by the floor of each hour use timedelta index agged = feature_df.gro...
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def fix_checkbox(params): """ Replace param_checkbox with param-indexed. """ pol_params = {} # drop checkbox parameters. for param, data in params.items(): if param.endswith("checkbox"): base_param = param.split("_checkbox")[0] pol_params[f"{base_param}-indexed"] ...
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def r_size(x): """Returns the difference between the largest and smallest value in a collection. Parameters ---------- x : collection of numbers Examples -------- >>> r_size([2,4,6,8]) 6 >>> r_size({3,6,9,11}) 8 """ return max(x) - min(x)
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import typing def __read_commands(stream: typing.TextIO, n: int, func: typing.Callable[[str], str]) -> list[str]: """Read the last N commands from the stream excluding the current process' command. :param stream: the TextIO object to read. :param n: the amount off lines to read. :param func: a functi...
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from typing import Dict from typing import Any def convert_avg_params(checkpoint: Dict[str, Any]) -> Dict[str, Any]: """Converts average state dict to the format that can be loaded to a model. Args: checkpoint: model. Returns: Converted average state dict. """ state_dict = checkpoi...
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from typing import Sequence from typing import Optional from typing import Tuple import itertools def dirac_notation(state: Sequence, decimals: int = 2, qid_shape: Optional[Tuple[int, ...]] = None) -> str: """Returns the wavefunction as a string in Dirac notation. For ex...
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from typing import Iterable from typing import Tuple import functools def min_max(x: Iterable[int]) -> Tuple[int, int]: """ Returns both the min and max of a sequence. This, rather than calling min(x), max(x), will work when a generator (or other single-use iterator) is passed in """ try: seq ...
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def rescale( value: float, old_min: float, old_max: float, new_min: float, new_max: float ) -> float: """Map value to a new range. Args: value (float): Value to be mapped old_min (float) old_max (float) new_min (float) new_max (float) Returns: float: ...
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def snap_to_cube(q_start, q_stop, chunk_depth=16, q_index=1): """ For any q in {x, y, z, t} Takes in a q-range and returns a 1D bound that starts at a cube boundary and ends at another cube boundary and includes the volume inside the bounds. For instance, snap_to_cube(2, 3) = (1, 17) Arguments:...
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import pickle def predict(dataX): """ Predict dependent variable from a features vector """ # load model model = pickle.load(open('model.pickle', 'rb')) # predict predY = model.predict(dataX.values.reshape(-1, dataX.shape[1])) return predY
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import six def satisfies_requirements(obj, requirements): """ Checks that an object satifies given requirements. Every key-value pair in the requirements object must be present in the target object for it to be considered satisfied. Returns True/False. """ for key, value in six.iteritems...
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import inspect def bind_kwargs(kallable, **kwargs): """Bind keyword arguments to a callable and return as a dictionary Args: callable (callable): any callable **kwargs: keyword arguments to bind Returns: (dict) """ call_signature = inspect.signature(kallable).bind_partial(**kwarg...
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def cached_property(*args, **kwargs): """ Decorator that creates a property that is cached. Keyword Arguments ----------------- use_cache_ctrl : bool If True, the property is cached using the Node cache_ctrl. If False, the property is only cached as a private attribute. Default Fals...
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def create_output(instance, item): """Create Terraform Module for Output the Defined Parameters.""" value = "${module.%s.%s}" % (instance, item) tf_output = {"value": [value]} return tf_output
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def normalize_price(price: str) -> float: """Normalizes USD price with thousand separator into float value""" return float(price.strip().replace(',', ''))
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def get_exploding_values(list_of_values: list) -> tuple: """ This function will determine which value is the largest in the list, and will return a tuple containing the information that will have the largest percentage within the pie chart pop off. :param list_of_values: :return: A tuple of 'exp...
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def get_terms_for_artist(conn,artistid): """ Returns the list of terms for a given artist ID """ q = "SELECT term FROM artist_term WHERE artist_id='"+artistid+"'" res = conn.execute(q) return map(lambda x: x[0],res.fetchall())
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def con_joule_to_kwh(energy_joule): """ Converts energy value from Joule to kWh Parameters ---------- energy_joule : float Energy demand value in Joule Returns ------- energy_kwh : float Energy demand value in kWh """ energy_kwh = energy_joule / (1000 * 3600) ...
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def get_num_replicas_in_sync(strategy): """ Returns the number of replicas in sync. """ try: return strategy.num_replicas_in_sync except AttributeError: return 1
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import re def _checkremove_que(word): """If word ends in -que and if word is not in pass list, strip -que""" in_que_pass_list = False que_pass_list = [ "atque", "quoque", "neque", "itaque", "absque", "apsque", "abusque", "adaeque", ...
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import re def remove_amp_references(txt: str) -> str: """Remove references to amp.""" txt = re.sub("^amp/", "", txt, flags=re.MULTILINE) txt = re.sub("/amp/", "/", txt, flags=re.MULTILINE) txt = re.sub("/amp:", ":", txt, flags=re.MULTILINE) return txt
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def chao1_uncorrected(observed, singles, doubles): """Calculates chao1 given counts. Eq. 1 in EstimateS manual. Formula: chao1 = S_obs + N_1^2/(2*N_2) where N_1 and N_2 are count of singletons and doubletons respectively. Note: this is the original formula from Chao 1984, not bias-corrected, and i...
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def user_to_color(user) -> int: """Gets the color for a given user. Example: `discord.Embed(color=user_to_color(ctx.author))` :param user: Any user. :type user: discord.User :return: Any color. :rtype: int """ return int(int(user.discriminator) / 9999 * 0xffffff)
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from typing import Dict def find_security(content: Dict, scheme: str) -> bool: """Check if security scheme is used in the provided content. Arguments --------- content OpenAPI document to be cleaned up. scheme Security scheme to be searched. Returns ------- Flag deter...
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def get_class_name_attr(class_obj): """ Given a class object returns attribute that contains the full name or None. :param class_obj: Class object (Class) :return: full name attr or None (str/None) """ cl_full_name = None for key in class_obj.__dict__: if 'full_name' in key: ...
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def _cache(f): """Decorator to cache return value of a function.""" cached = {} def cached_function(): """Cache return value in closure before calling function.""" if 'value' not in cached: cached['value'] = f() return cached['value'] return cached_function
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import random def get_random_smallint() -> str: """ Returns random smallint number """ number = str(random.randint(-32767, 32767)) return number
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def getStringParams(param_str): """Determines which keys are required if param_str.format() function is used. Returns the required keys as a list. """ params = [] index = 0 while True: index = param_str.find("{", index) if index >= 0: end_index = param_str.find("}"...
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def get_collection_and_suffix(collection_name): """ Lookup collection and suffix based on the name of the collection as used by GEE Parameters ========== collection_name: str, GEE name of the collection, eg. 'COPERNICUS/S2' Returns ======= collection: str, user-friendly name of the col...
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def csWater45Me_308K_p(p=1): """ Calculates chemical shift of Chemical shift of water line in 45% MeOH at 308K according to pressure (Maciej). """ # Chemical shift of water line in 45% MeOH at 308K according to pressure (Maciej) cs = -4.324584E-05*p + 4.661946E+00 return(cs)
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def _full_table_name(schema_name, name): """ Return the full name of a table, which includes the schema name. """ return "{}.{}".format(schema_name, name)
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def ounces_to_gramms(oz: float) -> float: """ Calculate ounces to gramms """ return oz * 28.3495
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def filter_location(job): """Filter out job location.""" location_container = job.find('div', attrs={'class': '-location'}) company_location = location_container.text.strip().lstrip('-').strip() return company_location
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def getCourseNums(majorNums, majorPages): """ Makes a set containing all Course Numbers. """ courseNums = set() for majorNum in majorNums: courses = [x[:x.index('"')] for x in majorPages[majorNum].split('<a name="')[1:]] for course in courses: courseNums.add(course) return courseNums
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def marginal_topic_distrib(doc_topic_distrib, doc_lengths): """ Return marginal topic distribution ``p(T)`` (topic proportions) given the document-topic distribution (theta) `doc_topic_distrib` and the document lengths `doc_lengths`. The latter can be calculated with :func:`~tmtoolkit.bow.bow_stats.doc_...
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def port_check(serverport): """ Taken from EARCIS code. Check if the server port passed in is a valid TCP port if not, return False; otherwise, return True. Input: (serverport) % (int) Output: Boolean """ if not (0 < serverport < 65536): return False return True
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def check_key_value(data, key, value): """Checks a key for the given value within a dictionary recursively.""" if isinstance(key, dict): for k, v in key.items(): return check_key_value(data[k], v, value) if data[key] == value: return True return False
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import torch def choose_forward_optimizer(args, net): """ Return the wished optimizer (based on inputs from args). Args: args: cli net: neural network Returns: optimizer """ if args.network_type in ('BP'): if args.shallow_training: print('Shallow training')...
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def resolver_has_tag(f, tag): """ Checks to see if a function has a specific tag. """ if not hasattr(f, '_resolver_tags'): return False return tag in f._resolver_tags
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def train_model(model, data, epochs=1000): """Training Routine :param model: Model :type model: tf.keras.Model object :param data: Data :type data: tuple :param epochs: Number of Epochs, defaults to 1000 :type epochs: int, optional :return: History of training :rtype: dict """ ...
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def get_many(d, required=[], optional=[], one_of=[]): """ Returns a predictable number of elements out of ``d`` in a list for auto-expanding. Keys in ``required`` will raise KeyError if not found in ``d``. Keys in ``optional`` will return None if not found in ``d``. Keys in ``one_of`` will raise Ke...
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def to_networkx(g, node_attrs=None, edge_attrs=None): """Convert to networkx graph. The edge id will be saved as the 'id' edge attribute. Parameters ---------- g : DGLGraph or DGLHeteroGraph For DGLHeteroGraphs, we currently only support the case of one node type and one edge type....
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import time def elapsed_time(text: str, start_t: int, sept: int = 70 ) -> str: """ Return elapsed time. Parameters ---------- :text: str Text to be printed :start_t: int Generated from time.time_ns() :sept: int ...
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def get_records(client, stream_name): """Return a list of records from given stream.""" shard_id = client.describe_stream( StreamName=stream_name )['StreamDescription']['Shards'][0]['ShardId'] shard_iterator = client.get_shard_iterator( StreamName=stream_name, ShardId=shard_id, ...
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def set_index(df, index, append=False, inplace=True): """ Turns one, or multiple dataframe columns into an index Arguments are the dataframe to be modified, as well as a column name or multiple column names in a list Optional arguments are; - append (default False, can be True or False) which d...
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def get_time_type(var): """ Inspect a variable and return it's time type, which can be either None: not a time variable 'datetime': is a date/time variable 'delta': is a timedelta variable """ vartype = str(type(var.values.ravel()[0])) if 'time' in vartype: if 'delta' in vartype:...
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def get_yes_no_answer(question): """ Ask user a yes/no-question. :param question: The question. :type question: str :return: The answer. :rtype: bool """ while True: answer = input(question + " [y/n] ").lower() if answer == "y" or answer == "yes": return T...
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def replace_inline(match): """Replace an inline unit expression, e.g. ``(1 m)``, by valid Python code using a Quantity call. """ return '(Quantity(\'' + match.group(1) + '\'))'
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def take_test_board(test, idx): # pylint: disable=redefined-outer-name """Take state from a test board of a test list from tests module Args: test (list): Test board list idx (int): Test board id Returns: list: A list of lists defining state """ board = test[idx] e = b...
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import glob def find_excel(directory="./"): """ Find the excel report. """ fcybl_files = glob.glob('{}/{}'.format(directory, './FCYBL*.xlsx')) if (len(fcybl_files) != 1): raise RuntimeError("Expected to find 1 FCYBL file, but found the following: {}".format(fcybl_files)) return fcybl_files[0]
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import json def read_file(filename): """ Return contents of a file as list. """ lines = [] try: f = open(filename, 'r') except (SystemExit, KeyboardInterrupt): raise if filename.split('.')[-1] == 'json': with open(filename, 'r') as f: lines = json.load...
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def map_keys(function, dictionary): """ Transform each key using the given function. Return a new dict with transformed keys. :param function: values map function :param dictionary: dictionary to mapping :return: dict with changed (mapped) keys """ return {function(key): value for key, val...
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def is_non_descending(knot_vector): """ Check whether a knot vector is in non-descending order. Arguments --------- knot_vector : array_like The knot vector. Returns ------- bool True if the knot vector is in non-descending order or False otherwise. """ for i in...
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def _part(f): """ Return a character representing a partly-filled cell with proportion `f` (rounded down to width of nearest available character). """ return [" ", "▏", "▎", "▍", "▌", "▋", "▊", "▉", "█"][int(9*f)]
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def topitems(iterable): """ Last (top) items from a list of lists, useful to get 'top' items from a list of stacks e.g. from a list of locations on a stackable game board. """ return [x[-1] for x in iterable]
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import json def open_json(json_file_path): """ :param json_file_path: path to open inference json file :returns: the json data dictionary of localized polygon and their classifications """ with open(json_file_path) as jf: json_data = json.load(jf) inference_data = json_data["feat...
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