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def MAX(src_column): """ Builtin maximum aggregator for groupby Example: Get the maximum rating of each user. >>> sf.groupby("user", ... {'rating_max':tc.aggregate.MAX('rating')}) """ return ("__builtin__max__", [src_column])
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def base_url(application_settings, base_path): """ Returns the service URL.""" return 'http://localhost:%s%s' % (application_settings['APP_PORT'], base_path)
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def create_element(type, props=None, *children): """ Convenience function to create a dictionary to represent a virtual DOM node. Intended for use inside ``Widget._render_dom()``. The content of the widget may be given as a series/list of child nodes (virtual or real), and strings. Strings are converte...
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from typing import Dict from typing import Union def od_parse(data: str) -> Dict[str, Union[str, list]]: """Parse od command output without argument, return a dict with the following keys: hex, ascii, list, text Returns: dict: with key hex, ascii, list, text """ text, asc_data, hex_data, list_...
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def unix_to_windows_path(path_to_convert, drive_letter='C'): """ For a string representing a POSIX compatible path (usually starting with either '~' or '/'), returns a string representing an equivalent Windows compatible path together with a drive letter. Parameters ---------- path_to_conve...
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def is_valid_structure(ext): """ Checks if structure format is compatible with GROMACS """ formats = ['tpr', 'gro', 'g96', 'pdb', 'brk', 'ent'] return ext in formats
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def versions_match(versions): """Check if the versions are the same""" base = None for name in versions: if base is None: base = versions[name] elif base != versions[name]: return False return True
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def split(iterable, function): """ Split an iterable into two lists according to test function :param iterable iterable: iterable of values to be split :param function function: decision function ``value => bool`` :returns: tuple( list with values for which function is `True`, list ...
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def load_text(input_file): """Load text from a text file and return as a string.""" with open(input_file, "r") as file: text = file.read() return text
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def binary_string(number: int) -> str: """Number to binary string :param number: some number (an integer) to turn into a binary string :return: Some string which is the binary string :rtype: str .. doctest:: python >>> binary_string(200) '11001000' >>> binary_string(10) ...
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def delete_max_length(data_in, data_out=None, max_length=20): """ Delete phrases with more than `max_length` characters. """ idx_to_remove = [count for count, sent in enumerate(data_in) if len(sent) > max_length] print(idx_to_remove) for idx in reversed(idx_to_remove): ...
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import re def find_application_includes(path): """ Build a set that contains the vtk includes found in the file. :param path: The path to the application file. :return: The includes that were found. """ includes = set() include_hdr1 = re.compile(r'((?:vtk|QVTK).*\.h)') include_hdr2 = ...
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def train_network(net, epochs, training_data, validation_data, batch_size, callbacks, verbose=1): """ train a network on data for a fixed number of epochs parameters: net: network to train epochs: number of epochs training_data: training data under the format of numpy arrays (inputs,...
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def get_current_valid_edges(current_nodes, all_edges): """ Returns edges that are present in Cytoscape: its source and target nodes are still present in the graph. """ valid_edges = [] node_ids = {n['data']['id'] for n in current_nodes} for e in all_edges: if e['data']['source'] in ...
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import csv def read_from_csv(fn): """Read in the CSV file and return a list of (email, password) tuples""" users = [] csvfile = csv.reader(open(fn, "r")) for row in csvfile: if row[0] != "": users.append(row) return users
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def scurve(start,end,n,s): """Return an S-Curve with a constant velocity section from start to end with n points. The start and end S-curves each have s points""" ys,ye = start,end s1 = [ (ye-ys)*(x*x-s*s)/(2*s*float(n-1))+ys for x in range(0,s) ] cv = [ (ye-ys)*(x-s)/float(n-1)+ys for x in range(s,s+n) ] s2 = [ ...
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import yaml def read_yaml(file_path): """ Reads YAML file and return a dictionary """ with open(file_path) as f: return yaml.safe_load(f)
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def extended_gcd(a, b): """ I don't claim any copyright on this. I copied it from the internet somewhere. Extended Greatest Common Divisor Algorithm. Returns: gcd: The greatest common divisor of a and b. s, t: Coefficients such that s*a + t*b = gcd Reference: https://en.wi...
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def ms_to_cs(ms): """Convert Millisecons to Centiseconds""" return ms / 10
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import operator def filter_by_count(df, col, method, value, norm=False): """Filter a dataframe to return a subset of rows determined by their value_counts(). For example, we can return rows with users who appear at least 5 times in the dataframe, or with users who appear less than 10 times, or who app...
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def reorder_minibatch(minibatch_data, minibatch_label): """ Helper method that sorts the minibatch data and labels so that the samples are sorted in order from longest to shortest. This is makes it more efficient to pad different-length samples, according to https://stackoverflow.com/questions/510...
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def fmt_ms(ms): """Take a time in milliseconds and convert it to mm:ss.ms""" time = int(ms) minutes = int(time / (60 * 1000)) time -= minutes * (60 * 1000) seconds = time / 1000 return str(minutes) + ':' + "{seconds:.3f}".format(seconds=seconds)
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import math def evap_fract_time_fingas(heavy, c1, time, T, c2 = None): """ Return the evaporated fraction [] source : (Fingas, 2015) Parameters ---------- heavy : True if the fuel need to follow a ln, else it will be a sqrt C : fingas constant time : Time from the spill [s] T : Te...
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from pathlib import Path import json def load_dict(file_path: Path) -> dict: """Loads a json file into a dictionary.""" with file_path.open('r') as infile: return json.load(infile)
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def guarded_unpack_sequence(it, spec, _getiter_): """Protect nested sequence unpacking. Protect the unpacking of 'it' by wrapping it with '_getiter_'. Furthermore for each child element, defined by spec, guarded_unpack_sequence is called again. Have a look at transformer.py 'gen_unpack_spec' for a...
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def no_resize(packing, cell): """Don't do any resizing""" return packing, cell
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import requests def read_build_cause(job_url, build_id): """Read cause why the e2e job has been started.""" api_query = job_url + "/" + str(build_id) + "/api/json" response = requests.get(api_query) actions = response.json()["actions"] cause = None for action in actions: if "_class" i...
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def _parse_package_name(name: str) -> str: """ Force lower case and replace underscore with dash to compare environment packages (see https://www.python.org/dev/peps/pep-0426/#name) Args: name: Unformatted package name Returns: Formatted package name """ return name.lower()...
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import pickle def load_pickle(file_pkl): """Receives a path of a pickle file and loads it. :param file_pkl: str referencing a .pkl file :returns: the object loaded""" with open(file_pkl,'rb') as open_file: object = pickle.load(open_file) return object
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def nice_bytes(number, lang='', speech=True, binary=True, gnu=False): """ turns a number of bytes into a string using appropriate units prefixes - https://en.wikipedia.org/wiki/Binary_prefix spoken binary units - https://en.wikipedia.org/wiki/Kibibyte implementation - http://stackoverflow.com/a/1094...
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import re def smart_truncate1(text, max_length=100, suffix='...'): """Returns a string of at most `max_length` characters, cutting only at word-boundaries. If the string was truncated, `suffix` will be appended. """ if len(text) > max_length: pattern = r'^(.{0,%d}\S)\s.*' % (max_length-le...
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def train_val_test_split(time_series, train_start_timestamp, train_end_timestamp, val_end_timestamp): """ Splits a given time series in training data, validation data and test data. Args: time_series (pandas.core.series.Series): input time series. train_start_timestamp (string): initial timestamp of trai...
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def grid_frames(params: dict): """ Generate frame parameters for individual grid data frames when performed in step mode. :param params: run parameters :return: list of dictionaries representing a frame each """ return ( { 'name': params['name'], 'uuid': params['...
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from typing import Any from typing import Union import re def replace_variables( input_string: str, interface: Any, key: Union[int, None] = None ) -> str: """ In a string, attempt to replace all the "$$X" variables with their definitions from the interface. If not found in the interface, it skips the ...
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def _BuildCustomMetricUtilizations(args, messages): """Builds custom metric utilization policy list from args. Args: args: command line arguments. messages: module containing message classes. Returns: AutoscalingPolicyCustomMetricUtilization list. """ result = [] if args.custom_metric_utilizati...
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def gcd(number1: int, number2: int) -> int: """Counts a greatest common divisor of two numbers. :param number1: a first number :param number2: a second number :return: greatest common divisor""" number_pair = (min(abs(number1), abs(number2)), max(abs(number1), abs(number2))) while number_pair[...
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def win_check(board, mark): """ function that takes in a board and checks to see if someone has won. :param board: the board to check :param mark: the last mark in placed in the board :return: True if game is win or False otherwise """ return ((board[7] == mark and board[8] == mark and board...
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def normalize_timedelta(timedelta): """ Given a string like "1w" or "-5d", convert it to an integer in milliseconds. Integers without a suffix are interpreted as seconds. Note: not related to the datetime timedelta class. """ try: return int(timedelta) * 1000 except ValueError as e: ...
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def flatten(a): """recursively flatten n-nested array example: >>> flatten([[1,2],[3,4],[5,6,[7,8],]]) [1, 2, 3, 4, 5, 6, 7, 8] """ if isinstance(a, list): b = list() for a_ in a: if isinstance(a_, list): b.extend(flatten(a_)) else: ...
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def chop_end_of_string(str_input, str_remove): """Function that strips the supplied str_remove from the end of the input string Parameters ---------- str_input: `str` A string to be chopped str_remove: `str` The string to be removed from the end of the input ...
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import random def pick_pivot(l, r): """ Picks a pivot element at random from the 25-75% input percentile. Params: l - left most index to pick as pivot r - right most index to pick as pivot Return: int - a randon number in [l, r] """ return random.randint(l, r)
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def throughput_history(summaries): """Calculates the change in completion for a list of summaries. Args: summaries (List[ProjectSummary]): List of project summaries to analyze Returns: List[int]: The change in number of items complete between each set of two summaries provided. """ h...
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from typing import Dict def get_headers(token: str) -> Dict[str, str]: """ Returns authorization header for the data registry with the provided token. :param token: personal access token :return: Authorization headers """ return {"Authorization": f"token {token}"} if token else {}
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def hook_TakeOver(state): """Implements `DeepState_TakeOver`, returning 1 to indicate that it was hooked for symbolic execution.""" return 1
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def _theoretical_logit_grad(x): """Reference implementation for the gradient of the logit function.""" return 1 / (x * (1.0 - x))
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def chrtonam(c): """Find unique elements in an iterable and in what order they appear. Return a 3-tuple (uniqelements, eltoindex, map): uniqelements -- elements in order of first appearance eltoindex -- map from elements to their indices in uniqelements; equivalent to dict((el, i) for (i, el) in uniqelements) ...
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def get_computers_with_policy_and_relay_list(api, configuration, api_version, api_exception, relay_list_id, policy_id): """ Search for computers that are assigned to a specific policy and relay list. :param api: The Deep Security API modules. :param configuration: Configuration object to pass to the api cl...
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def is_unitless(ds, variable): """ Returns true if the variable is unitless Note units of '1' are considered whole numbers or parts but still represent physical units and not the absence of units. :param netCDF4.Dataset ds: An open netCDF dataset :param str variable: Name of the variable "...
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def encode(tokenizer, question, context): """encodes the question and context with a given tokenizer""" encoded = tokenizer.encode_plus(question, context) return encoded["input_ids"], encoded["attention_mask"]
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from typing import Iterable def scheduler_story(keys: set, transition_log: Iterable) -> list: """Creates a story from the scheduler transition log given a set of keys describing tasks or stimuli. Parameters ---------- keys : set A set of task `keys` or `stimulus_id`'s log : iterable ...
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def splitstring(string, split_character=' ', part=None): """ Split a string based on a character and get the parts as a list string: The string to split split_character: The character to split for the string. The default is ' '. part: Get a specific part of the list. The default is N...
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def parse_data(data, objects_format, separator=" "): """ Takes a list of strings and a list of objects format and returns a list of objects formatted according to the objects format. Example: parse_data(['forward 10', 'left 90', 'right 90'], [{'key': 'command, 'format': str}, {'key': 'value', 'forma...
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from typing import Dict from typing import Any def _make_pod_envconfig( config: Dict[str, Any], relation_state: Dict[str, Any] ) -> Dict[str, Any]: """Generate pod environment configuration. Args: config (Dict[str, Any]): configuration information. Returns: Dict[str, Any]: pod enviro...
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def ClusterKey(cluster, key_type): """Return a cluster-generated public encryption key if there is one. Args: cluster: Cluster to check for an encryption key. key_type: Dataproc clusters publishes both RSA and ECIES public keys. Returns: The public key for the cluster if there is one, otherwise None...
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def best_neighbor_match_check(k_neighbors_labels): """ Returns the value with the most repetitions in `k_neighbors`. """ k_neighbors_labels.sort() longest_repeats = current_repeats = 0 current_value = best_match_value = k_neighbors_labels[0] for value in k_neighbors_labels: if value == current_value: current_...
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def file_to_string(sql_path): """Converts a SQL file holding a SQL query to a string. Args: sql_path: String containing a file path Returns: String representation of a file's contents """ with open(sql_path, 'r') as sql_file: return sql_file.read()
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import torch def compute_distances(x, n_particles, n_dimensions, remove_duplicates=True): """ Computes the all distances for a given particle configuration x. Parameters ---------- x : torch.Tensor Positions of n_particles in n_dimensions. remove_duplicates : boolean Flag indi...
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def combine(intervals): """combine overlapping and adjacent intervals. >>> combine([(10,20), (30,40)]) [(10, 20), (30, 40)] >>> combine([(10,20), (20,40)]) [(10, 40)] >>> combine([(10,20), (15,40)]) [(10, 40)] """ if not intervals: return [] new_intervals = [] inte...
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import math def _atand(v): """Return the arc tangent (measured in in degrees) of x.""" return math.degrees(math.atan(v))
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def get_key_padding_mask(padded_input, pad_idx): """Creates a binary mask to prevent attention to padded locations. Arguements ---------- padded_input: int Padded input. pad_idx: idx for padding element. Example ------- >>> a = torch.LongTensor([[1,1,0], [2,3,0], [4,5,0...
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def rank_features(explanation): """ Given an explanation of type (name, value) provide the ranked list of feature names according to importance Parameters ---------- explanation : list Returns ---------- List contained ranked feature names """ ordered_tuples = sorted(explanation, ...
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def interval_width(interval): """Returns half the width of an interval, given by a list""" return (interval[1]-interval[0])/2+(interval[1]+interval[0])/2
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def uniqify(seq): # Dave Kirby """ Return only unique items in a sequence, preserving order :param list seq: List of items to uniqify :return list[object]: Original list with duplicates removed """ # Order preserving seen = set() return [x for x in seq if x not in seen and not seen.add...
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from typing import Union def _create_table_row(key: str, value: Union[str, int], highlight: bool = False) -> str: """ Create table row for stats panel """ template_stats_data = """ <tr style="border-bottom: 1px solid;"> <th style="text-align: left">{key}</th> <td style="text-align:...
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def dict_to_list(dictionary, order_list): """ Create a list from dictionary, according to ordering in order_list """ #assert sorted(order_list) == sorted(dictionary.keys()) wc_list = [] for wc_name in order_list: wc_list.append(dictionary[wc_name]) return wc_list
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import requests def make_request(endpoint): """ Make a request to the given URL and return the response. """ return requests.get( f"https://api.audioboom.com{endpoint}", # The API needs version specifying headers={'Accept': 'application/json; version=1'} ).json()["body"]
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from typing import List def list_squares(n: int) -> List[int]: """Generates a list of squares of numbers from 0 to n using list comprehension. doctests: >>> list_squares(2) [0, 1, 4] >>> list_squares(5) [0, 1, 4, 9, 16, 25] """ x = [i ** 2 for i in range(0, n + 1)] return x
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def cell_trap_getter_generator(priv_attr): """ Generates a getter function for the cell_trap property. """ def getter(self): if getattr(self, priv_attr) is None: data =\ ( self.gfpffc_bulb_1 - self.gfpffc_bulb_bg )/self.gfpffc_bulb_bg ...
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def set_difference(dependent,independent): """ This function compares two lists, and takes their set-theoretical difference: dependent - independent arguments: dependent, independent """ return list(set(dependent)-set(independent))
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def new_value_part_2(seat: str, visible_count: int) -> str: """ Returns the next state for one seat. """ if seat == "L" and visible_count == 0: return "#" elif seat == "#" and 5 <= visible_count: return "L" else: return seat
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def create_rg_azure(resourceGroup, tag, source): """Create Terraform Module for Azure Resource Group.""" tf_module_rg = { "source": "%s/m-azure-rg" % source, "resourceGroupName": resourceGroup['name'], "resourceGroupRegion": resourceGroup['region'], "tagEnvironment": tag } ...
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def lambda_handler(event, context): """ Expects input of the form: [ [ Input, [ O1 ] ], ... [ Input, [On ] ] ] Returns: [ O1, ... On ] """ return [ e[1][0] for e in event ]
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def create_tlink_attributes(reltype, id1, id2, link_id, origin): """Create a dictionary with tlink attibutes. Arguments: reltype - string id1 - string id2 - string link_id - string of the form l\d+ origin - string Returns a dictionary.""" # NOTE: this method should ...
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def prettify_cve_announcement(cve_announcement, api_url): """Format a cve_announcement to be human friendly.""" return ( f"[{cve_announcement.cve_code}] {cve_announcement.content}\n" f"Score: {cve_announcement.score}\n" f"Exploit code maturity: {cve_announcement.exploit_code_maturity}\n"...
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def _autoname_plots(plotlist, sequential=False): """ Automatically name any plots that were not given a name by the user. """ namelist = [] count = 0 for plot in plotlist: if plot.get('type') == 'figure': continue name = plot.get('axes') if name is None: ...
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def maybe_add_slash(path): """Add a final trailing slash if it wasn't there already""" with_trailing_slash = path if path.endswith('/') else path + '/' return with_trailing_slash
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def expected_error_node_kwargs(node_kwargs): """Return the expected error message depending on node_kwargs.""" if 's' in node_kwargs: return "Please use 'node_size' and not 'node_kwargs'" elif 'c' in node_kwargs: return "Please use 'node_color' and not 'node_kwargs'"
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def del_from_dict(dictionary, srcip, dstip): """Removes an entry from the given dictionary. Assumed is that srcip and dstip exist in the dictionary. :param dictionary: dictionary to remove an entry from :type dictionary: dictionary :param srcip: source ip :type srcip: string :param dstip: destination ip ...
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def create_function_from_source(function_source, imports=None): """Return a function object from a function source Parameters ---------- function_source : unicode string unicode string defining a function imports : list of strings list of import statements in string form that allow ...
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def slice_z_center(mesh): """Slice mesh through center in z normal direction, move to z=0.""" slice_mesh = mesh.slice(normal='z') slice_mesh.translate((0, 0, -slice_mesh.center[-1]), inplace=True) return slice_mesh
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import zlib def decompress_data(data): """ Decompresses the data with zlib :param data: :return: """ return zlib.decompress(data)
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def isblankstr(line): """ check for blank string :param line: :return bool: """ return len(line.strip()) == 0
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def iterable_response_to_dict(iterator): """ Convert Globus paginated/iterable response object to a dict """ output_dict = {"DATA": []} for item in iterator: dat = item try: dat = item.data except AttributeError: pass output_dict["DATA"].append(dat) return output_dict
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def _check_size(node, size=0): """Recursive function, visits all nodes and counts number of elements. Return the number of elements.""" if node is None: return size else: size += 1 size = _check_size(node.left_node, size) # Go down the left tree size = _check_size(nod...
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def GetUpdatesUrl(project_name, max_results=1000): """Construct the URL to the issues updates for the given project.""" return ('http://code.google.com/feeds/p/%s' '/issueupdates/basic?max-results=%d' % (project_name, max_results))
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from pathlib import Path def _get_data_size_of_dir(path: Path) -> float: """Returns the data volume / size of a directory given at path. Parameters ---------- path : Path Path for which the size should be determined Returns ------- float Value between 0 and the max size o...
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from typing import Type from typing import Any from typing import Set def _get_all_subclasses(cls: Type[Any]) -> Set[Type[Any]]: """Returns a list of all classes that inherit directly or indirectly from the given class.""" subclasses = set() def recurse(cl: Type[Any]) -> None: for subclass in cl....
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def coco2pascal(box): """Convert bounding box coordinates from Coco format to Pascal VOC. Go from [x, y, width, height] to [x1, y1, x2, y2]. """ x, y, width, height = box return [x, y, x + width, y + height]
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def merge(ll, rl): """Merge given two lists while sorting the items in them together :param ll: List one (left list) :param rl: List two (right list) :returns: Sorted, merged list """ res = [] while len(ll) != 0 and len(rl) != 0: if ll[0] < rl[0]: res.append(ll.pop(0)) ...
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def filtrar_cortas(texto, chars=0): """Filtra líneas en texto de longitud chars o inferior. Parameters ---------- texto : str Texto que se quiere filtrar. chars : int Mínimo número de caracteres en una línea de texto. Returns ------- str Texto filtrado. """ ...
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def get_numeric_columns(df): """ # Returns a list of numeric columns of the dataframe df # Parameters: # df (Pandas dataframe): The dataframe from which extract the columns # Returns: # A list of columns names (strings) corresponding to numeric columns """ numeric_columns = lis...
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def dotp(a, b): """Dot product of two equal-dimensioned vectors""" return sum(aterm * bterm for aterm,bterm in zip(a, b))
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def line_plot(ax, x, ys, labels=None, styles=None, param_dict=None): """ A helper function to make a line graph Parameters ---------- ax : Axes The axes to draw to x : array The x data ys : array The y data labels : list The ys labels param_dict : di...
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def reconstruction_loss(reconstruction, orig): """ Computes the reconstruction loss :param reconstruction: batch x im_size :param orig: batch x im_ht x im_wd :return rloss: The reconstruction loss """ rloss = ((reconstruction - orig.view(orig.size(0), ...
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def generate_uniform_prior(params, indent=4): """ Generates the JAGS prior declarations for a list of parameters. The strings are generated using a specifiable number of indentation whitespaces. """ prior_strings = [] for p in params: prior_strings.append( "{}{} ~ dunif(...
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def aggregate_values_from_key(host_state, key_name): """Returns a set of values based on a metadata key for a specific host.""" aggrlist = host_state.aggregates aggregate_vals = set() for aggr in aggrlist: if key_name in aggr.metadata: aggregate_vals.add(aggr.metadata[key_name]) ...
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def compute_frequencies(words): """ Args: words: list of words (or n-grams), all are made of lowercase characters Returns: dictionary that maps string:int where each string is a word (or n-gram) in words and the corresponding int is the frequency of the word (or n-gram) in wo...
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def is_int(s : str) -> bool: """ Check if string is an int. """ try: float(s) except Exception as e: return False return float(s).is_integer()
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def url_from_id(id): """Returns URL of article with given ID""" return "https://www.ncbi.nlm.nih.gov/pubmed/" + id
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def get_environment(certificate): """Return environment associated with certificate. """ STAGING_ENV = "Fake LE Intermediate X1" for component in certificate.get_issuer().get_components(): if component[0] == 'CN': if component[1] == STAGING_ENV: return 'staging' ...
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