commit stringlengths 40 40 | subject stringlengths 1 3.25k | old_file stringlengths 4 311 | new_file stringlengths 4 311 | old_contents stringlengths 0 26.3k | lang stringclasses 3
values | proba float64 0 1 | diff stringlengths 0 7.82k |
|---|---|---|---|---|---|---|---|
47fc9784b76f2389ae4392450d67bb4affa96536 | Fix header comment | tests/whitebox/_misc.py | tests/whitebox/_misc.py | # Copyright 2016 Red Hat, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing... | Python | 0 | @@ -1427,20 +1427,23 @@
the
-Rust service
+stratisd daemon
.%0A
|
1540fb09fbb26430dccd405d685b6ce0feb0e62c | Fix deletion of marketplaces by superusers | src/wirecloud/platform/markets/views.py | src/wirecloud/platform/markets/views.py | # -*- coding: utf-8 -*-
# Copyright 2012 Universidad Politécnica de Madrid
# This file is part of Wirecloud.
# Wirecloud is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
#... | Python | 0.000295 | @@ -3544,147 +3544,8 @@
()%0A%0A
- if user != request.user.username:%0A get_object_or_404(Market, user=request.user, name=market).delete()%0A else:%0A
|
2a40ff77cc16be1c3327a4b12c6dd3a592375346 | Add bootstrapped theme | project/settings/base.py | project/settings/base.py | import os
import dj_database_url
from django.core.exceptions import ImproperlyConfigured
from django.contrib.messages import constants as message_constants
def get_env_variable(var_name):
"""Get the environment variable or return exception"""
try:
var = os.environ[var_name]
# Replace unix str... | Python | 0 | @@ -4578,24 +4578,57 @@
aticfiles',%0A
+ 'django_admin_bootstrapped',%0A
'django.
|
b4eb149099b64bcfccc8a8f2fd0c5008c74a4fe0 | move write() out of the scope of an IOError catch clause not meant for it | oonib/deck/handlers.py | oonib/deck/handlers.py | import glob
import json
import os
import re
import yaml
from oonib import errors as e
from oonib.handlers import OONIBHandler
from oonib import log
from oonib.config import config
class DeckDescHandler(OONIBHandler):
def get(self, deckID):
# note:
# we don't have to sanitize deckID, because it's a... | Python | 0 | @@ -722,42 +722,8 @@
%5Bk%5D%0A
- self.write(response)%0A%0A
@@ -738,24 +738,24 @@
pt IOError:%0A
+
@@ -822,17 +822,16 @@
ingDeck%0A
-%0A
@@ -902,32 +902,32 @@
eys!%22 %25 deckID)%0A
-
rais
@@ -947,16 +947,46 @@
ckKeys%0A%0A
+ self.write(response)%0A%0A
... |
6264f58bdbe7c25132a0153713b97749a5809828 | Version display should work even if git not installed | storage_service/administration/views.py | storage_service/administration/views.py | import subprocess
from django.contrib import messages
from django.contrib.auth import get_user_model
from django.contrib.auth.forms import SetPasswordForm
from django.shortcuts import render, redirect, get_object_or_404
from tastypie.models import ApiKey
from common import utils
from storage_service import __version_... | Python | 0.000001 | @@ -1258,16 +1258,26 @@
except
+ (OSError,
subproc
@@ -1298,16 +1298,17 @@
essError
+)
:%0A
|
fd456d55ceb4cd084c9ca754771c7b12235dcb5e | reset key | s.py | s.py | #encoding: utf-8
import os
from apscheduler.schedulers.blocking import BlockingScheduler
import requests
MAILGUN_KEY = os.environ.get('MAILGUN_KEY')
sched = BlockingScheduler()
@sched.scheduled_job('cron', day_of_week='mon-fri', hour=12)
def add_egg():
print(send_mail(get_text(get_price())))
@sched.schedul... | Python | 0.000003 | @@ -472,25 +472,25 @@
= _calc_los
-e
+t
_money(float
@@ -738,25 +738,25 @@
ef _calc_los
-e
+t
_money(x):%0A
|
c81ecba98638666c19659832aa197a4d1f0c79f1 | Change filter-thread-sanitizer-output.py python script printing settings to print full trace on skip | tools/filter-thread-sanitizer-output.py | tools/filter-thread-sanitizer-output.py | """
You can pipe clang-thread-sanitizer output to this program, and it'll filter it, removig false positives indicated in the blacklist file below
You run neblio-qt with, as an example:
neblio-qt --noquicksync 2<&1 | python tools/filter-thread-sanitizer-output.py | tee output.txt
"""
import sys
import os
import fnmatc... | Python | 0 | @@ -2085,13 +2085,10 @@
ing
-after
+on
mat
@@ -2130,16 +2130,21 @@
%22 + str(
+orig_
data_que
|
d83e0a34161d3783c12a271608c81780dd6f14dd | fix path to 'kmip_server' module | kmip/tests/integration/utils/server.py | kmip/tests/integration/utils/server.py | # Copyright (c) 2014 The Johns Hopkins University/Applied Physics Laboratory
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICEN... | Python | 0.000007 | @@ -761,16 +761,23 @@
ervices.
+server.
kmip_ser
|
0b4bd61d4e89618bd4950aca8fa1f5e154104297 | Remove unused import | cli/main.py | cli/main.py | #! /usr/bin/python
import sys
import readline
import argparse
from cli.built_in_commands import BuildInCommand
from cli.commands import CommandList
from cli.crypto import KeyPair
from cli.exception import CliException
from cli.network import generateTransaction, sendTx
import cli.file_io as file_io
import cli.comple... | Python | 0.000001 | @@ -28,25 +28,8 @@
sys%0A
-import readline%0A%0A
impo
@@ -40,16 +40,16 @@
rgparse%0A
+
%0Afrom cl
@@ -162,47 +162,8 @@
air%0A
-from cli.exception import CliException%0A
from
@@ -243,150 +243,8 @@
e_io
-%0Aimport cli.completer as completer%0Afrom cliff.app import App%0Afrom cliff.commandmanager import CommandMana... |
5687a00e4ec24b78e41b0377bfe524d7f0b13a43 | Allow three_pid_creds as well as threePidCreds in /account/3pid | synapse/rest/client/v2_alpha/account.py | synapse/rest/client/v2_alpha/account.py | # -*- coding: utf-8 -*-
# Copyright 2015, 2016 OpenMarket Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | Python | 0.000012 | @@ -3975,38 +3975,149 @@
-if 'threePidCreds' not in body
+threePidCreds = body.get('threePidCreds')%0A threePidCreds = body.get('three_pid_creds', threePidCreds)%0A if threePidCreds is None
:%0A
@@ -4191,54 +4191,8 @@
RAM)
-%0A threePidCreds = body%5B'threePidCreds'%5D
%0A%0A
|
c3fb87846d1f1a38fe2e37521464dea59832ff6c | remove unused import from distutils | pywt/__init__.py | pywt/__init__.py | # flake8: noqa
# Copyright (c) 2006-2012 Filip Wasilewski <http://en.ig.ma/>
# Copyright (c) 2012-2016 The PyWavelets Developers
# <https://github.com/PyWavelets/pywt>
# See COPYING for license details.
"""
Discrete forward and inverse wavelet transform, stationary wavelet transform,
wavelet p... | Python | 0 | @@ -441,51 +441,8 @@
port
-%0Afrom distutils.version import LooseVersion
%0A%0Afr
|
009c982fe796a9b31fda226cd9304afb1cdb8c38 | consolidate update* functions | clusters.py | clusters.py | import numpy as np
import pandas as pd
from astropy.cosmology import Planck13 as cosmo
from astropy import units
import sys
sys.path.insert(1,'/Users/jesford/astrophysics/cofm') #temporary path adjust
from cofm import c_DuttonMaccio
try:
from IPython.display import display
notebook_display = True
except:
... | Python | 0 | @@ -1485,32 +1485,22 @@
lf._
-update_depends_on_richne
+richness_to_ma
ss()
@@ -1634,109 +1634,359 @@
.%22)%0A
+%0A
- %0A def _update_depends_on_richness(self):%0A self._richness_to_mass()%0A
+def _richness_to_mass(self):%0A %22%22%22Calculate M_200 for simple power-law scal... |
e0f6f8af00e17a29fe43906fd4861e6a4f2d7cec | Fix byte code for ifs without elses | visitor.py | visitor.py | from .ast import *
from .invoke import S
from itertools import count
tagger = lambda x=count(): next(x)
def fixtags(t):
return list(fixtags_(t))
def fixtags_(t):
reg = {}
i = 0
for x in t:
if x[0] == 'label':
reg[x[1]] = i
else:
i += 1
for x in t:
fx... | Python | 0.005679 | @@ -1990,46 +1990,8 @@
dy)%0A
- if self.elsebody is not None:%0A
@@ -2005,20 +2005,16 @@
agger()%0A
-
yiel
@@ -2074,31 +2074,62 @@
elsebody is
-not Non
+None:%0A yield from Nil()%0A els
e:%0A y
@@ -2165,20 +2165,16 @@
sebody)%0A
-
yiel
@@ -2193,43 +2193,8 @@
end)
-... |
dafd492d7a91d8001b7ae2a1bddc2f0e18466c2c | Allow for chosing quotes | quotes/quotes.py | quotes/quotes.py | import discord
from random import choice as randchoice
from redbot.core import commands, checks, Config, bot
from redbot.core.utils.chat_formatting import box, humanize_list
from redbot.core.utils.menus import menu, DEFAULT_CONTROLS
# https://red-discordbot.readthedocs.io/en/latest/framework_utils.html
# https://githu... | Python | 0 | @@ -997,29 +997,320 @@
-if quote_list != %5B%5D:%0A
+arguments = ctx.message.split(%22 %22)%0A%0A if quote_list != %5B%5D:%0A if len(arguments) %3E 1:%0A try:%0A quote_pos = int(arguments%5B1%5D)%0A await ctx.send(box(f%22%7Bquote_list%5Bquote... |
730dc123e20a774ea0355400ac9ec0b5d286b7c6 | Change minimal value for ai time | cmd_line.py | cmd_line.py | #! /usr/bin/env python
# title :non_gui.py
# description :Runs a cmd-line version of Reversi
# author :andresthor
# date :05-02-2017
# usage :python non_gui.py
# python_version :3.5.2
# =============================================================================
from rever... | Python | 0 | @@ -35,23 +35,24 @@
:
-non_gui
+cmd_line
.py%0A# de
@@ -3388,11 +3388,11 @@
) %3C
-0.5
+1.0
):%0A
|
e65295f1c9b7ac3ac1fa6583fdbd69fd651c5662 | Fix ReplaceInstance constructor | touchdown/aws/ec2/auto_scaling_group.py | touchdown/aws/ec2/auto_scaling_group.py | # Copyright 2014-2015 Isotoma Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in wr... | Python | 0.000001 | @@ -3281,16 +3281,8 @@
elf,
- runner,
tar
@@ -3350,16 +3350,8 @@
t__(
-runner,
targ
|
a25c0cce29c7e2c05f0d0036cf1b7b1a67d2ccf0 | Fix : Store one keyword as an array when Image (IPTC metadata) parser is used [SDESK-6566] (#2372) | superdesk/io/feed_parsers/image_iptc.py | superdesk/io/feed_parsers/image_iptc.py | # -*- coding: utf-8; -*-
#
# This file is part of Superdesk.
#
# Copyright 2013 - 2018 Sourcefabric z.u. and contributors.
#
# For the full copyright and license information, please see the
# AUTHORS and LICENSE files distributed with this source code, or
# at https://www.sourcefabric.org/superdesk/license
import arro... | Python | 0 | @@ -4214,16 +4214,139 @@
ontinue%0A
+%0A # SDESK-6566%0A if isinstance(item.get(%22keywords%22), str):%0A item%5B%22keywords%22%5D = %5Bitem%5B%22keywords%22%5D%5D%0A%0A
|
b82f21ea92aad44ca101744a3f5300280f081524 | Fix site when logged in | sweettooth/review/context_processors.py | sweettooth/review/context_processors.py |
from extensions.models import ExtensionVersion
def n_unreviewed_extensions(request):
if not request.user.has_perm("review.can-review-extensions"):
return dict()
return dict(n_unreviewed_extensions=ExtensionVersion.unreviewed().count())
| Python | 0 | @@ -226,16 +226,24 @@
Version.
+objects.
unreview
|
7d5cc169387ec97d79fa2f2a0c59fed40c888638 | change the internal name of tests to descriptively show maximum number of retries | conftest.py | conftest.py | from collections import namedtuple, OrderedDict
import glob
import logging
import os
import re
import yaml
import pytest
Scenario = namedtuple("Scenario", ["path", "qmin", "config"])
def ordered_load(stream, Loader=yaml.Loader, object_pairs_hook=OrderedDict):
"""Make YaML load to OrderedDict.
This is done ... | Python | 0 | @@ -5039,19 +5039,49 @@
s%5D, ids=
-str
+lambda id: %22max-retries-%22+str(id)
)%0A%0A%0Adef
|
cb93088cb6a3f7522838fb74f133f5598c76897f | Fix multiline magic | tensorflow/tools/compatibility/ipynb.py | tensorflow/tools/compatibility/ipynb.py | # Copyright 2019 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | Python | 0.000002 | @@ -5010,35 +5010,27 @@
if
-cell%5B%22cell_type%22%5D != %22code%22
+not is_python(cell)
:%0A
|
898016cbde52392d6e85156f8e7f7084698475f1 | Fix API change in make_test_data.py | tools/make_test_data.py | tools/make_test_data.py | #!/usr/bin/env python
# -*- encoding: utf-8 -*-
#
# Copyright © 2012 New Dream Network, LLC (DreamHost)
#
# Author: Doug Hellmann <doug.hellmann@dreamhost.com>
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy o... | Python | 0.000008 | @@ -3785,16 +3785,42 @@
ounter(c
+, cfg.CONF.metering_secret
)%0A
|
885c4e4ae1a0cebc6cc08affeabf7232870307c0 | Add station and line as optional variables | web/app.py | web/app.py | import os
from flask import Flask
from flask import render_template
from helpers.tube import line_status, station_open
from helpers.metoffice import get_forcast
app = Flask(__name__)
app.debug = True
def get_value():
result = 100
forcast = get_forcast()
print "Feels Like Temperature: %s" % forcast['... | Python | 0 | @@ -61,16 +61,42 @@
emplate%0A
+from flask import request%0A
from hel
@@ -234,16 +234,29 @@
t_value(
+station, line
):%0A r
@@ -297,20 +297,16 @@
rcast()%0A
-
%0A pri
@@ -427,20 +427,16 @@
r Type'%5D
-
%0A pri
@@ -525,24 +525,14 @@
tus(
-'Victoria')%0A
+line)%0A
%0A
@@ -923,24 +923,16 ... |
c8b051020d2bbab75b0e15bfdca2ad7a20d1af71 | rename attr TableColumns.cols to .names. | db.py | db.py | import sqlite3
from consts import DB_NAME
from common import AttrDict
from schema import TABLE_SCHEMAS
from verbosity import verbose, set_verbosity
g_conn = None
g_table_info = AttrDict() # {tname: TableColumns()}
class TableColumns(object):
def __init__(self, *args, sep='|'):
self._sep = sep
... | Python | 0 | @@ -392,19 +392,20 @@
in(self.
-col
+name
s)%0A%0A
@@ -550,19 +550,20 @@
def
-col
+name
s(self):
@@ -2589,19 +2589,20 @@
o.tasks.
-col
+name
s, value
|
13ab494e0caaca6a460a49528c3aae4c7707042a | add a bit more docstring | pyecharts/custom/page.py | pyecharts/custom/page.py | #!/usr/bin/env python
# coding=utf-8
from pyecharts import template
class Page(object):
def __init__(self):
self.__charts = []
def add(self, achart_or_charts):
"""
:param achart_or_charts:
:return:
"""
if isinstance(achart_or_charts, list):
self.... | Python | 0 | @@ -177,32 +177,78 @@
ts):%0A %22%22%22
+%0A Append chart(s) to the rendering page
%0A%0A :param
@@ -504,32 +504,79 @@
l%22):%0A %22%22%22
+%0A Produce rendered charts in a html file
%0A%0A :param
@@ -932,32 +932,32 @@
er_embed(self):%0A
-
%22%22%22%0A%0A
@@ -9... |
353c09e221483929075d5673b6ac3f705754caaf | Add --version option | pyinstrument/__main__.py | pyinstrument/__main__.py | import sys, os, codecs, runpy, tempfile
from optparse import OptionParser
from pyinstrument import Profiler
from .six import exec_
def main():
usage = ("usage: pyinstrument [options] scriptfile [arg] ...")
parser = OptionParser(usage=usage)
parser.allow_interspersed_args = False
parser.add_option('-m... | Python | 0.000002 | @@ -67,16 +67,36 @@
nParser%0A
+import pyinstrument%0A
from pyi
@@ -225,16 +225,174 @@
%5D ...%22)%0A
+ version_string = 'pyinstrument %7Bv%7D, on Python %7Bpyv%5B0%5D%7D.%7Bpyv%5B1%5D%7D.%7Bpyv%5B2%5D%7D'.format(%0A v=pyinstrument.__version__,%0A pyv=sys.version_info,%0A )%0A
pars
@@ -420,1... |
b86d5dbca2e8f772720bcd21297d292edbe04606 | Update bot.py | intelmq/lib/bot.py | intelmq/lib/bot.py | import re
import sys
import json
import time
import ConfigParser
from intelmq.lib.event import Event
from intelmq.lib.pipeline import Pipeline
from intelmq.lib.utils import decode, log
SYSTEM_CONF_FILE = "/etc/intelmq/system.conf"
PIPELINE_CONF_FILE = "/etc/intelmq/pipeline.conf"
BOTS_CONF_FILE = "/etc/... | Python | 0.000001 | @@ -4982,46 +4982,11 @@
r %25
-int(self.parameters.logging_threshold)
+500
==
|
423aa887375c071f0a269466e050020f331c84e1 | Remove print statement | copytext.py | copytext.py | #!/usr/bin/env python
from markupsafe import Markup
from openpyxl.reader.excel import load_workbook
class CopyException(Exception):
pass
class Error(object):
"""
An error object that can mimic the structure of the COPY data, whether the error happens at the Copy, Sheet or Row level. Will print the error ... | Python | 0.007015 | @@ -4306,47 +4306,8 @@
j)%0A%0A
- print json.dumps(obj)%0A%0A
|
92dc3cd54c0e6ecd934f2e09955cd9b3f315bc33 | Improve comment in QrOpTest | tensorflow/compiler/tests/qr_op_test.py | tensorflow/compiler/tests/qr_op_test.py | # Copyright 2018 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applica... | Python | 0 | @@ -1253,184 +1253,223 @@
-%22It's unknown why this test requires TF32 to be disabled%22)%0A# TODO(reedwm): Determine why this test requires TF32 disabled. Debugging is%0A# difficult due to this test's flakiness
+'XLA QR op calls matmul. Also, matmul used for verification. Also with '%0A 'TF32, mysterious %22U... |
1142a0c3eda4b09ead668fb4fac553d1cb59fe62 | Remove global/local variable optimization hacks | whip/db.py | whip/db.py | """
Whip database storage module.
All IP ranges with associated information are stored in a LevelDB
database. The key/value layout is as follows:
* The end IP is used as the key. This allows for quick
fast range lookups.
* The begin IP and the actual information is stored in the value. The
most recent infoset fo... | Python | 0 | @@ -1403,25 +1403,16 @@
_record(
-%0A
begin_ip
@@ -1441,104 +1441,8 @@
sets
-,%0A _extract_datetime=operator.itemgetter('datetime'),%0A _encode=json_encoder.encode
):%0A
@@ -1616,25 +1616,37 @@
key=
-_extract_
+operator.itemgetter('
datetime
, re
@@ -1641,16 +1641,18 @@
datetime
+')
, re... |
96e3d2720a805a08190936a78c91a8c9746daab9 | Update Keras.py | Depthwise-Separable-Convolution/Keras.py | Depthwise-Separable-Convolution/Keras.py | from keras.datasets import mnist
from keras.initializers import RandomUniform
from keras.layers import Conv2D, Dense, DepthwiseConv2D, Flatten, MaxPooling2D
from keras.models import Sequential
from keras.optimizers import SGD
from keras.utils import to_categorical
# input image dimensions
img_rows, img_cols =... | Python | 0 | @@ -398,26 +398,8 @@
.9%0D%0A
-num_classes = 10%0D%0A
%0D%0A(
@@ -593,24 +593,27 @@
num_classes
+=10
)%0D%0A %0D%0Ax_test
@@ -740,16 +740,19 @@
_classes
+=10
)%0D%0A %0D%0Amo
@@ -1510,27 +1510,18 @@
d(Dense(
-num_classes
+10
,%0D%0A
|
efbb841bb0968abeb2d3bba5a535cb8619131b2b | Remove dupe licence header | touchdown/config/ini.py | touchdown/config/ini.py | # Copyright 2015 Isotoma Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing... | Python | 0 | @@ -1,581 +1,4 @@
-# Copyright 2015 Isotoma Limited%0A#%0A# Licensed under the Apache License, Version 2.0 (the %22License%22);%0A# you may not use this file except in compliance with the License.%0A# You may obtain a copy of the License at%0A#%0A# http://www.apache.org/licenses/LICENSE-2.0%0A#%0A# Unless required by... |
23359b52f468d3eed62533e7aed3ea9afce998e4 | fix webdav on windows | pyspider/webui/webdav.py | pyspider/webui/webdav.py | #!/usr/bin/env python
# -*- encoding: utf-8 -*-
# vim: set et sw=4 ts=4 sts=4 ff=unix fenc=utf8:
# Author: Binux<roy@binux.me>
# http://binux.me
# Created on 2015-6-3 11:29
import os
import re
import time
import base64
from six import BytesIO
from wsgidav.wsgidav_app import DEFAULT_CONFIG, WsgiDAVApp
from wsg... | Python | 0.000001 | @@ -5524,16 +5524,35 @@
th(path)
+.replace('%5C%5C', '/')
%0A
@@ -5575,24 +5575,47 @@
, '.', ''):%0A
+ path = '/'%0A
|
701792e4d4ecc1597b2f66fc3e63b38b3482c1bf | Fix tf.complex_abs gradient test to not be flaky Change: 117872871 | tensorflow/python/ops/math_grad_test.py | tensorflow/python/ops/math_grad_test.py | # Copyright 2016 Google Inc. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or a... | Python | 0.000095 | @@ -2580,24 +2580,46 @@
igma=None):%0A
+ np.random.seed(7)%0A
if dtype
|
4a1eeebc753dde28e2d9c29b532730e531a04d77 | write results after each test to save memory | pytest_cagoule/plugin.py | pytest_cagoule/plugin.py | from coverage import coverage
import six
from .db import get_connection
from .git_parser import get_changes
from .select import get_node_ids
def pytest_addoption(parser):
parser.addoption(
'--cagoule-capture', action='store_true', dest='cagoule_capture',
help='capture coverage info for cagoule',
... | Python | 0.000001 | @@ -876,17 +876,439 @@
elf.
-data = %7B%7D
+setup_db()%0A%0A%0A def setup_db(self):%0A connection = get_connection()%0A with connection:%0A connection.execute(%22DROP TABLE IF EXISTS coverage;%22)%0A connection.execute(%22%22%22%0A CREATE TABLE coverage (%0A ... |
1e21ba5101fe1e47fec5acacd8ac9329a71fc9bb | Change __init__ | __init__.py | __init__.py | from .mygmm.mygmm import * | Python | 0.000028 | @@ -4,22 +4,16 @@
m .mygmm
-.mygmm
import
@@ -13,8 +13,9 @@
import *
+%0A
|
c26c44f044a2e48cc53a0f52adce366807c87e2d | Add version number. | __init__.py | __init__.py | from .Averager import Averager
from .Config import Config
from .RateTicker import RateTicker
from .Ring import Ring
from .SocketTalk import SocketTalk
from .SortedList import SortedList
from .String import string2time, time2string, time2levels, time2dir, time2fname
from .Timer import Timer
from .UserInput import user_i... | Python | 0 | @@ -1,12 +1,32 @@
+__version__ = '1.0'%0A
from .Averag
|
629a965cbba1b66d3f5c520b1a90cf26f131a434 | fix a test for large requests | test/alternator/test_manual_requests.py | test/alternator/test_manual_requests.py | # Copyright 2020 ScyllaDB
#
# This file is part of Scylla.
#
# Scylla is free software: you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# Scylla... | Python | 0 | @@ -4449,16 +4449,33 @@
Error):%0A
+ try:%0A
@@ -4528,16 +4528,78 @@
': big%7D)
+%0A except ClientError:%0A raise BotoCoreError()
%0A%0Adef te
|
bf6b49af7540acc56892ee1ed05479b141e18a14 | Update commands.py | commands.py | commands.py | # Not entirely sure these are sane...
def conditional(statement):
compiledScript = ''
# Compare an array
if isinstance(statement[0], classes.List):
compiledScript += '\tmov ecx,' + utils.getVar(statement[0].value[0]) + '\n\tadd ecx,' + utils.getVar(statement[0].value[1]) + '\n'
... | Python | 0.000001 | @@ -1,8 +1,1580 @@
+# Copyright (c) 2016, Connor E. Haight %3Cconnor.haight@gmail.com%3E%0A# All rights reserved.%0A#%0A# Redistribution and use in source and binary forms, with or without%0A# modification, are permitted provided that the following conditions are met:%0A# * Redistributions of source code must retai... |
62b1db51b2742ff57e48d692e034cdeb6e648d7c | Fix issue when adding multiple subscriptions that the previous record is overwritten in the GUI. | invoicing/views.py | invoicing/views.py | """
SynLogistics: Invoicing and subscription views.
"""
#
# Copyright (C) by Wilco Baan Hofman <wilco@baanhofman.nl> 2011
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Affero General Public License as published by
# the Free Software Foundation; either versi... | Python | 0 | @@ -3404,16 +3404,84 @@
unt'%5D)%0A%0A
+%09%09%09# Give the id to the frontend%0A%09%09%09response%5B'id'%5D = subscription.id
%0A%09%09excep
|
08da61299b9ae970194c57748741a27fa77bf6f9 | Fix bug: modify devices type. from dict_items to list | uitester/test_manager/device_manager.py | uitester/test_manager/device_manager.py | from uitester.test_manager import adb
from uitester.test_manager import rpc_server
from threading import Thread
from queue import Queue
class Device:
BLANK = 0x0, 'Default status'
OFFLINE = 0x1, 'Device is offline'
ONLINE = 0x2, 'Device is online'
RUNNING = 0x3, 'Device is running tests'
def __in... | Python | 0.000001 | @@ -950,24 +950,29 @@
return
+list(
self._device
@@ -977,15 +977,17 @@
ces.
-item
+value
s()
+)
%0A%0A
|
47e483315b7586795bd52ae0a010aa23aa1a9d56 | Fix bug for not commenting on non-python PRs | pep8speaks/handlers.py | pep8speaks/handlers.py | # -*- coding: utf-8 -*-
import json
import os
from flask import Response
import requests
from pep8speaks import helpers
def handle_pull_request(request):
# A variable which is set to False whenever a criteria is not met
# Ultimately if this is True, only then the comment is made
PERMITTED_TO_COMMENT = Tr... | Python | 0 | @@ -2403,38 +2403,22 @@
-PERMITTED_TO_COMMENT =
+if not
helpers
@@ -2457,16 +2457,58 @@
comment)
+:%0A PERMITTED_TO_COMMENT = False
%0A%0A
|
bde3b3d1d90338e23e2550bc6fdd317e5e696f0f | Add command-line arguments: root, hosts and name with regexp | zk-find.py | zk-find.py | #
# This is a FIND utility for Zookeeper
#
# Author: Aleksandr Vinokurov <aleksandr.vin@gmail.com>
# Url: https://github.com/aleksandr-vin/zk-find
#
import logging
import logging.config
try:
logging.config.fileConfig('logging.conf')
except:
logging.basicConfig()
logger = logging.getLogger('zk-find')
from... | Python | 0.000002 | @@ -182,16 +182,32 @@
g.config
+%0Aimport argparse
%0A%0Atry:%0A
@@ -446,16 +446,26 @@
odeError
+%0Aimport re
%0A%0Adef li
@@ -478,24 +478,29 @@
ldren(parent
+,prog
):%0A try:%0A
@@ -583,16 +583,83 @@
+ node%0A
+ if prog:%0A if prog.search(node):%0A
@@ -703,16 +70... |
bf471cdcef8ce8cce973139fa4c4ad3dd4f306a3 | Disable 'hey Siri' with AirPods | conf/mac.py | conf/mac.py | # type: ignore
# silence linter errors
defaults = defaults
run = run
### trackpad settings ###
for key in (
'com.apple.AppleMultitouchTrackpad',
'com.apple.driver.AppleBluetoothMultitouch.trackpad'
):
trackpad = defaults[key]
trackpad['Clicking'] = True # touch to click
# enable *both* methods o... | Python | 0.999967 | @@ -5362,8 +5362,145 @@
hot_dir%0A
+%0A# turn off %22hey Siri%22 (on Mac, triggers more by accident than on purpose)%0Adefaults%5B'com.apple.Siri'%5D%5B'VoiceTriggerUserEnabled'%5D = False%0A
|
04dd322f8e3f040cf9b25d2c0ce77e3aa9fea02c | Update .cluster.py | .cluster.py | .cluster.py |
from socket import gethostname
import os
defaults = {
'netmask': '255.255.255.0',
'public_key': '~/.ssh/id_rsa.pub',
'private_key': '~/.ssh/id_rsa',
'domain_name': 'local',
'extra_disks': {},
'openstack': {
'flavor': 'm1.small',
'image': 'CC-Ubuntu14.04',
'key_name': g... | Python | 0.000001 | @@ -279,22 +279,23 @@
': '
-CC-
Ubuntu
+-
14.04
+-64
',%0A
@@ -424,19 +424,20 @@
ng_ip':
-Tru
+Fals
e, %0A
|
04ee8994563ee5bdbb9ae48604b2911197c54afd | Add environment variable to opt out of log collection (#2176) | conftest.py | conftest.py | """ This file configures python logging for the pytest framework
integration tests
Note: pytest must be invoked with this file in the working directory
E.G. py.test frameworks/<your-frameworks>/tests
"""
import logging
import os
import os.path
import sys
import pytest
import sdk_diag
import sdk_utils
import teamcity
... | Python | 0 | @@ -1213,16 +1213,267 @@
ame__)%0A%0A
+# The following environment variable allows for log collection to be turned off.%0A# This is useful, for exampl in testing.%0AINTEGRATION_TEST_LOG_COLLECTION = str(%0A os.environ.get('INTEGRATION_TEST_LOG_COLLECTION', %22True%22)%0A).lower() in %5B%22true%22, %221%22%5D%0A%0A
... |
15314a94f9c590cfda24f3ae4191c7fcf9997668 | Revert "Hack code to pass tests" | pytmatrix/orientation.py | pytmatrix/orientation.py | """
Copyright (C) 2009-2013 Jussi Leinonen
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limitation the rights to
use, copy, modify, merge, publish, distri... | Python | 0.000001 | @@ -4417,128 +4417,8 @@
ha%0A%0A
- import pytmatrix.orientation as orientation%0A tm.orient = orientation.orient_averaged_fixed%0A tm._init_orient()%0A
|
3a9057996797aade8214a88f34fe2d0bec7bd460 | Add return value for /init endpoint. | perimeter/perimeter.py | perimeter/perimeter.py | import sys
from cassandra.cluster import Cluster
from flask import Flask, render_template, jsonify
# from kafka import SimpleProducer, KafkaClient
import srvlookup
# This uses mesos-dns to locate our cassandra cluster. Cassandra
# always runs on the same port.
cassandra_cli = Cluster(['cassandra-dcos-node.cassandra.... | Python | 0 | @@ -907,16 +907,50 @@
figured%22
+%0A return %22cassandra configured%22
%0A%0A# Kafk
|
b6da8865c9a12b9ce88d809d2fa4dfb601be01d0 | make sure same timezone is used when calculating delta | reboot_required/check.py | reboot_required/check.py | # vim: ts=4:sw=4:et
# (C) Datadog, Inc. 2010-2017
# All rights reserved
# Licensed under Simplified BSD License (see LICENSE)
# project
from checks import AgentCheck
from os import stat, utime, remove
from os.path import isfile
from stat import ST_MTIME
from datetime import datetime, timedelta
class RebootRequiredCh... | Python | 0.000003 | @@ -1311,16 +1311,19 @@
atetime.
+utc
fromtime
|
7e398bce17bfc95471e49d95b00d396049eae7df | Add default postgres connection | phrasebook/settings.py | phrasebook/settings.py | """
Django settings for phrasebook project.
Generated by 'django-admin startproject' using Django 1.9.2.
For more information on this file, see
https://docs.djangoproject.com/en/1.9/topics/settings/
For the full list of settings and their values, see
https://docs.djangoproject.com/en/1.9/ref/settings/
"""
import os... | Python | 0 | @@ -2511,16 +2511,221 @@
%7D%0A%7D%0A%0A
+DATABASES = %7B%0A 'default': %7B%0A 'ENGINE': 'django.db.backends.postgresql',%0A 'NAME': 'phrasebook',%0A 'USER': '',%0A 'PASSWORD': '',%0A 'HOST': '',%0A 'PORT': '',%0A %7D%0A%7D%0A%0A
# Update
|
6c9ab323883160744f9048112079f1b7964c42b7 | Version bump | bespin/__init__.py | bespin/__init__.py | VERSION="0.5.7.8"
| Python | 0.000001 | @@ -12,7 +12,7 @@
5.7.
-8
+9
%22%0A
|
6f7fc9067df57c4c15204a3208768acf4b76ed85 | Update version to 0.2.0.dev0 | bfg9000/version.py | bfg9000/version.py | version = '0.1.0'
| Python | 0.000001 | @@ -10,9 +10,14 @@
'0.
-1.
+2.0.dev
0'%0A
|
ef156eca331203696f38b2f829314c48eeb5f207 | Update version to 0.1.0 | bfg9000/version.py | bfg9000/version.py | version = '0.1.0-dev'
| Python | 0.000001 | @@ -13,10 +13,6 @@
.1.0
--dev
'%0A
|
02a5d982178d7916d17d2310476d35657780a1e6 | fix a bug of css | bgmi/front/http.py | bgmi/front/http.py | # encoding: utf-8
from __future__ import print_function, unicode_literals
import os
import json
import datetime
import hashlib
import tornado.ioloop
import tornado.options
import tornado.httpserver
import tornado.web
import tornado.template
from tornado.options import options, define
from collections import OrderedDict... | Python | 0.000032 | @@ -2726,32 +2726,31 @@
data =
-Followed
+Bangumi
.get_all_fol
@@ -2746,24 +2746,23 @@
get_all_
-followed
+bangumi
()%0A
|
8099c35b31e67643e14dcd3cd30fa104fcca6fb5 | Revert accidental change out of version.py | scikits/image/version.py | scikits/image/version.py | # THIS FILE IS GENERATED FROM THE SCIKITS.IMAGE SETUP.PY
version='0.2dev'
| Python | 0.000001 | @@ -1,61 +1,4 @@
-# THIS FILE IS GENERATED FROM THE SCIKITS.IMAGE SETUP.PY%0A
vers
@@ -6,12 +6,18 @@
on='
-0.2
+unbuilt-
dev'%0A
+%0A
|
fc51c36b636d4a396faac02285605dafe0779104 | Bump version to 18.0.0a5 | resolwe_bio/__about__.py | resolwe_bio/__about__.py | """Central place for package metadata."""
# NOTE: We use __title__ instead of simply __name__ since the latter would
# interfere with a global variable __name__ denoting object's name.
__title__ = 'resolwe-bio'
__summary__ = 'Bioinformatics pipelines for the Resolwe platform'
__url__ = 'https://github.com/genial... | Python | 0 | @@ -498,9 +498,9 @@
0.0a
-4
+5
%22%0A%0A_
|
06b410666b0720a7fbf78d57be0907ce7fd19990 | version bump | picraftzero/version.py | picraftzero/version.py | version = "0.2.9"
build_string = "beta"
| Python | 0.000001 | @@ -12,9 +12,10 @@
0.2.
-9
+10
%22%0Abu
|
c307dc1ef794f9a3262be67621892adec4aff25f | friendly task name | dbaas/notification/admin/task_history.py | dbaas/notification/admin/task_history.py | # -*- coding: utf-8 -*-
from __future__ import absolute_import, unicode_literals
from django.contrib import admin
from django.utils.translation import ugettext_lazy as _
import logging
from ..models import TaskHistory
from dbaas import constants
LOG = logging.getLogger(__name__)
class TaskHistoryAdmin(admin.ModelAdm... | Python | 0.998809 | @@ -431,32 +431,41 @@
= %5B%22task_id%22, %22
+friendly_
task_name%22, %22tas
@@ -576,115 +576,8 @@
r%22%5D%0A
- #list_display = %5B%22task_id%22, %22task_name%22, %22task_status%22, %22user%22, %22arguments%22, %22created_at%22, %22ended_at%22%5D%0A
@@ -636,45 +636,8 @@
s%22)%0A
- # list_filter = (%22... |
485c0baaf3a712d6ff2954016ae95bec451eab2f | Update postprocess.py | postprocessor/postprocess.py | postprocessor/postprocess.py | import json
import csv
def save_dict_as_csv(data, filename):
node_keys = sorted(data.keys())
time_keys = sorted(data[node_keys[0]].keys()) # add key=int for integer timesteps
header = ['date'] + node_keys
writer = csv.writer(open(filename, 'w'))
writer.writerow(header)
for t in time_keys:
row = [t]
... | Python | 0.000001 | @@ -15,16 +15,36 @@
port csv
+%0Aimport pandas as pd
%0A%0Adef sa
@@ -1450,18 +1450,25 @@
n('links
-.c
+updated.t
sv', 'rU
@@ -1491,32 +1491,47 @@
r = csv.reader(f
+,delimiter='%5Ct'
)%0A network = li
@@ -1575,26 +1575,33 @@
open('nodes
-.c
+updated.t
sv', 'rU') a
@@ -1624,24 +1624,39 @@
csv.reader(f
+,delim... |
5bdd659768ad5e5a50f85113a2d354ac51653b42 | Update ds_list_contains_duplicate.py | leetcode/ds_list_contains_duplicate.py | leetcode/ds_list_contains_duplicate.py | # @file Contains Duplicate
# @brief Given an array of numbers find if there are any duplicates
# https://leetcode.com/problems/contains-duplicate/
'''
Given an array of integers, find if the array contains any duplicates.
Your function should return true if any value appears at least twice in the
array, and it shoul... | Python | 0.000003 | @@ -1084,48 +1084,177 @@
oach
- (complexity: time = O(n), space = O(n))
+%0A#Use a dictionary to store all numbers. If a number is seen 2nd time return immediately%0A#Time Complexity = O(n) since we have a single for-loop to look at all numbers
%0Adef
@@ -1308,19 +1308,18 @@
for
-ele
+nu
m in num
@@ -1333,40... |
e10195f93cb39afcc432ec25466073cec093b2bb | remove debug output | app/form/validators.py | app/form/validators.py | from wtforms.validators import ValidationError
from app.pacman import get_pkg
from app.util import multiline_to_list
from pyalpm import vercmp
class ValidPackageName(object):
def __init__(self):
self.message = u'Unknown package.'
def __call__(self, form, field):
versions = get_pkg(field.data)... | Python | 0 | @@ -591,83 +591,32 @@
-print(pkgnames)%0A for pkgname in pkgnames:%0A print(pkgname)
+for pkgname in pkgnames:
%0A
|
43b5fdf54442bf1e80afd722e86d51ea029f6996 | Fix repository-sync crashing on overlapping external projects (RCE-1968) | mint/scripts/repository_sync.py | mint/scripts/repository_sync.py | #
# Copyright (c) 2011 rPath, Inc.
#
import hashlib
import logging
import sys
from conary.dbstore import sqlerrors
from mint.lib.scriptlibrary import GenericScript
from mint.db import database
from mint.db import repository
from rpath_proddef import api1 as proddef
log = logging.getLogger(__name__)
# Bump this to fo... | Python | 0 | @@ -1247,32 +1247,53 @@
syncAll(self):%0A
+ seen = set()%0A
for hand
@@ -1336,16 +1336,111 @@
ries():%0A
+ if handle.fqdn in seen:%0A continue%0A seen.add(handle.fqdn)%0A
|
b2143f62c79c30b7fd2a365894dddf86a24d39fe | fix save_fig | prediction/anf_py/remodel.py | prediction/anf_py/remodel.py | from datetime import datetime
import matplotlib.pyplot as plt
import numpy as np
import tensorflow as tf
# Save figure for 1-dimension data
def save_figures(data, label,
x_label, y_label,
path):
array = np.asarray(data)
x = np.arange(1, array.shape[0] + 1)
plt.plot(x, ar... | Python | 0.000001 | @@ -100,16 +100,43 @@
as tf%0A%0A
+plt.switch_backend('agg')%0A%0A
%0A# Save
|
85ece96a2dd566b19f88686b54ea903d9850abd6 | Introduce MapOptions and MapPlot abstract base classes | bokeh/models/map_plots.py | bokeh/models/map_plots.py | """ Models for displaying maps in Bokeh plots.
"""
from __future__ import absolute_import
from ..properties import HasProps
from ..properties import Enum, Float, Instance, Int, JSON
from ..enums import MapType
from ..validation.warnings import MISSING_RENDERERS, NO_GLYPH_RENDERERS
from ..validation.errors import REQU... | Python | 0 | @@ -118,16 +118,26 @@
HasProps
+, abstract
%0Afrom ..
@@ -386,23 +386,32 @@
t Plot%0A%0A
+@abstract%0A
class
-G
MapOptio
@@ -436,35 +436,50 @@
%22%22%22
-Options for GMapPlot object
+Abstract base class for map options' model
s.%0A%0A
@@ -746,25 +746,285 @@
the
-GMapPlot.
+map.%0A %22%22%22)%0A%0A@abstrac... |
a76aed1fd8410e4dee300b7c7c5665885c8e61e0 | Add a sanity check if all websocket connections were closed | bokeh/server/wsmanager.py | bokeh/server/wsmanager.py | import uuid
import logging
from .. import protocol
from flask import request
log = logging.getLogger(__name__)
class MultiDictionary(object):
def __init__(self):
self.dict = {}
def add(self, k, v):
self.dict.setdefault(k, set()).add(v)
def remove_val(self, k, v):
self.dict.setde... | Python | 0.000003 | @@ -5,16 +5,30 @@
rt uuid%0A
+import atexit%0A
import l
@@ -757,16 +757,183 @@
+atexit.register(self._atexit)%0A%0A def _atexit(self):%0A if len(self.sockets) != 0:%0A log.warning(%22Not all websocket connections were closed properly%22)%0A
%0A def
|
f8a8e936b2f6f3edcbc68b69056271975626631c | Terminate the build log recorder if the parent builder disappears | rmake/worker/recorder.py | rmake/worker/recorder.py | #
# Copyright (c) SAS Institute Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in w... | Python | 0.000002 | @@ -771,16 +771,17 @@
erver):%0A
+%0A
def
@@ -986,16 +986,41 @@
ey = key
+%0A self.ppid = None
%0A%0A de
@@ -1296,16 +1296,49 @@
pass
+%0A self.ppid = os.getppid()
%0A%0A de
@@ -1554,11 +1554,9 @@
ime=
-0.1
+2
):%0A
@@ -1610,16 +1610,103 @@
lf._map)
+%0A if os.getppid() != ... |
b20853aa4c41535ff5277d347105e9ec55bc473d | Fix work on MySQL backend | mistral/db/sqlalchemy/models.py | mistral/db/sqlalchemy/models.py | # -*- coding: utf-8 -*-
#
# Copyright 2013 - Mirantis, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requir... | Python | 0.000001 | @@ -2072,22 +2072,20 @@
lumn(sa.
-String
+Text
(), null
@@ -2125,32 +2125,35 @@
olumn(sa.String(
+200
))%0A tags = sa
@@ -2207,24 +2207,26 @@
n(sa.String(
+80
))%0A proje
@@ -2245,32 +2245,34 @@
olumn(sa.String(
+80
))%0A trust_id
@@ -2293,16 +2293,18 @@
.String(
+80
))%0A%0A%0Acla
@@ -2634,16 +2634... |
54d9c6a9c21e5e4856c8bd890add8dfa4c992ced | Add from _peak_finding import * to signal.__init__ | scipy/signal/__init__.py | scipy/signal/__init__.py | """
=======================================
Signal processing (:mod:`scipy.signal`)
=======================================
.. module:: scipy.signal
Convolution
===========
.. autosummary::
:toctree: generated/
convolve -- N-dimensional convolution.
correlate -- N-dimensional correlation.
fftconvol... | Python | 0 | @@ -6665,16 +6665,105 @@
low-pass
+%0A ricker -- return ricker wavelet%0A cwt -- perform continuous wavelet transform
%0A%0A%22%22%22%0A%0Ai
@@ -7178,16 +7178,44 @@
import *
+%0Afrom _peak_finding import *
%0A%0A__all_
|
b2ca3cf7e6610bf0f3c6ac5aa79c3322c276c439 | set the exit code to non-zero when contracts fails | scrapy/commands/check.py | scrapy/commands/check.py | from __future__ import print_function
from collections import defaultdict
from functools import wraps
from unittest import TextTestRunner
from scrapy.command import ScrapyCommand
from scrapy.contracts import ContractsManager
from scrapy.utils.misc import load_object
from scrapy.utils.spider import iterate_spider_outpu... | Python | 0.000113 | @@ -2502,16 +2502,85 @@
Errors()
+%0A self.exitcode = 0 if self.results.wasSuccessful() else 1
%0A%0A de
|
f131fc524d557312da010b22379d75d52637ebd1 | missing comma | semantics.py | semantics.py | # -*- coding: utf-8 -*-
##############################################################################
#
# Semantics, module for Odoo, Open Source Management Solution
# Copyright (C) 2014 InsPyration EURL (<http://www.inspyration.fr>).
#
# This program is free software: you can redistribute it and/or modify
# ... | Python | 0.999998 | @@ -3313,24 +3313,25 @@
ring=%22Field%22
+,
%0A
|
0e60e7b04d71149c39e8fe3a047de777cd381638 | enable shell in subprocess` | breakseq2/breakseq_top.py | breakseq2/breakseq_top.py | #!/usr/bin/env python
import logging
import os
import subprocess
import pysam
import preprocess_and_align
import breakseq_core
import breakseq_post
import compute_zygosity
import gen_vcf
import breakseq_index
from _version import __version__
def add_options(main_parser):
preprocess_and_align.add_options(main_par... | Python | 0 | @@ -3073,16 +3073,28 @@
dex_cmd,
+ shell=True,
stderr=
|
e8b4f7d6917647d4158ed39991cd00cfe45a0264 | Add some support for bigg.ucsd.edu/api/v2 | cameo/webmodels.py | cameo/webmodels.py | # Copyright 2014 Novo Nordisk Foundation Center for Biosustainability, DTU.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless requi... | Python | 0 | @@ -2423,16 +2423,669 @@
index)%0A%0A
+def index_models_bigg():%0A response = requests.get('http://bigg.ucsd.edu/api/v2/models')%0A if response.ok:%0A return DataFrame.from_dict(response.json()%5B'results'%5D)%0A else:%0A raise Exception(%22Could not index available models. bigg.ucsd.edu returne... |
b60664cebec29dff0917fb13af270d3b47404256 | set setttings default | royalerant/royalerant.py | royalerant/royalerant.py | # -*- coding: utf-8 -*-
"""
The MIT License (MIT)
Copyright (c) 2017 SML
Permission is hereby granted, free of charge, to any person obtaining a
copy of this software and associated documentation files (the "Software"),
to deal in the Software without restriction, including without limitation
the rights to use, copy... | Python | 0.000001 | @@ -1792,16 +1792,340 @@
JSON))%0A%0A
+ if self.settings.get(%22twitter_api%22) is None:%0A self.settings%5B%22twitter_api%22%5D = %7B%0A %22consumer_key%22: None,%0A %22consumer_secret%22: None,%0A %22access_token%22: None,%0A %22access_tok... |
2d51b0ee6c6b4b34863d745b86963d5af9e55dee | Use self.fail() in MiGdbSetShowTestCase.test_lldbmi_gdb_set_target_async_off (MI) | test/tools/lldb-mi/TestMiGdbSetShow.py | test/tools/lldb-mi/TestMiGdbSetShow.py | """
Test lldb-mi -gdb-set and -gdb-show commands.
"""
import lldbmi_testcase
from lldbtest import *
import unittest2
class MiGdbSetShowTestCase(lldbmi_testcase.MiTestCaseBase):
mydir = TestBase.compute_mydir(__file__)
@lldbmi_test
@expectedFailureWindows("llvm.org/pr22274: need a pexpect replacement for... | Python | 0.00001 | @@ -3049,108 +3049,39 @@
-# generate error if it's not %22@%5C%22argc=1%5C%5C%5C%5Cr%5C%5C%5C%5Cn%22%0A self.expect(%22$UNEXPECTED FOUND
+self.fail(%22unexpected found
: %25s
-%5C.%5E
%22 %25
@@ -3098,21 +3098,8 @@
%5Bit%5D
-, timeout = 0
)%0A%0A
|
57eb5eb910eeedca757526fe104b3ed2ee104413 | Add note that -F option (file storage) is experimental | sacredboard/bootstrap.py | sacredboard/bootstrap.py | # coding=utf-8
"""
Bootstrap module parses command line arguments and initializes the app.
Configures the database connection and starts the web application.
"""
import locale
import sys
import click
from flask import Flask
from gevent.pywsgi import WSGIServer
from sacredboard.app.config import jinja_filters
from sa... | Python | 0.000003 | @@ -1560,16 +1560,31 @@
bserver.
+ (experimental)
%22)%0A@clic
|
81328ba4de673786029f9a52bdde716e5395272e | add delete test | sacrud/tests/__init__.py | sacrud/tests/__init__.py | # -*- coding: utf-8 -*-
from sqlalchemy.orm import sessionmaker
from sqlalchemy import create_engine
import unittest
from sacrud.tests.test_models import User, Profile, PHOTO_PATH
from sacrud.action import get_relations, delete_fileobj, read, update
from sacrud.action import get_pk, index, create
from pyramid.testing ... | Python | 0.000001 | @@ -243,16 +243,24 @@
, update
+, delete
%0Afrom sa
@@ -3821,24 +3821,16 @@
ommit()%0A
-
%0A
@@ -4834,8 +4834,430 @@
t(23))%0A%0A
+ def test_delete(self):%0A%0A user = User(u'Vasya', u'Pupkin', u%22123%22)%0A self.session.add(user)%0A self.session.commit()%0A%0A profil... |
49bff5b61336b9fbec79078ff0a8f6a1344b86fa | Remove unnecessary bar comments | skylines/model/search.py | skylines/model/search.py | import shlex
from sqlalchemy import literal_column, cast, desc, Unicode
from sqlalchemy.dialects.postgresql import array
from skylines.model import db
PATTERNS = [
('{}', 5), # Matches token exactly
('{}%', 3), # Begins with token
('% {}%', 2), # Has token at word start
('%{}%', 1), # Has ... | Python | 0 | @@ -326,40 +326,8 @@
%0A%5D%0A%0A
-##############################%0A%0A
%0Adef
@@ -2634,40 +2634,8 @@
ry%0A%0A
-##############################%0A%0A
%0Adef
@@ -4603,40 +4603,8 @@
ns%0A%0A
-##############################%0A%0A
%0Adef
@@ -5001,40 +5001,8 @@
ns%0A%0A
-##############################%0A%0A
%0Adef
@@... |
6fd689f64d6de0e719935f607be49abf223117aa | correct key in validation | slimta/app/validation.py | slimta/app/validation.py | # Copyright (c) 2013 Ian C. Good
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distrib... | Python | 0.000031 | @@ -5035,12 +5035,19 @@
'
-scan
+reject_spam
': (
|
0fe6e79f9bc201b3c63ad6f1ce400c9d79bd484a | Fix path issues in example script | bin/idiotscript.py | bin/idiotscript.py | #!/usr/bin/python3
import os, sys
if len(sys.argv) < 2 or len(sys.argv) > 3:
print("Invalid number of arguments.")
sys.exit()
if os.path.isfile(sys.argv[1]) == False:
print("IdiotScript program does not exist.")
sys.exit()
import io
import idiotscript
from idiotscript import InstructionSet, Collect... | Python | 0.000001 | @@ -29,16 +29,235 @@
s, sys%0A%0A
+def alter_path():%0A script_path = os.path.dirname(os.path.realpath(__file__))%0A try:%0A path_index = sys.path.index(script_path)%0A except ValueError:%0A return%0A sys.path.pop(path_index)%0Aalter_path()%0A%0A
if len(s
|
d926f321a26fe7c6b72513f88fe60bc4f3c899e4 | Update model cnes bed | app/models/cnes_bed.py | app/models/cnes_bed.py | from sqlalchemy import Column, Integer, String, func
from app import db
class CnesBed(db.Model):
__tablename__ = 'cnes_bed'
year = Column(Integer, primary_key=True)
region = Column(String(1), primary_key=True)
mesoregion = Column(String(4), primary_key=True)
microregion = Colum... | Python | 0 | @@ -108,16 +108,46 @@
lename__
+
= 'cnes
@@ -162,32 +162,62 @@
year
+
= Column(Integer
@@ -246,32 +246,62 @@
region
+
= Column(String(
@@ -336,24 +336,54 @@
soregion
+ ... |
3974bcaf151c491f4608b17860741d2388d15002 | convert bed to bigBed | data_formats/converters.py | data_formats/converters.py | #
# Author : Manuel Bernal Llinares
# Project : trackhub-creator
# Timestamp : 28-09-2017 14:20
# ---
# © 2017 Manuel Bernal Llinares <mbdebian@gmail.com>
# All rights reserved.
#
"""
This module offers converters between different formats
"""
import abc
# App imports
import config_manager
import ensembl.servi... | Python | 0.999999 | @@ -1957,22 +1957,16 @@
command(
-self,
input_fi
@@ -3872,23 +3872,16 @@
#
- TODO -
Use bed
@@ -3933,28 +3933,718 @@
ile%0A
-pass
+runner_conversion = self._get_command_line_runner()%0A runner_conversion.command = self.get_bed_to_bigbed_conversion_command(self.file_path_source,%0A ... |
824d78322e36d97daaf3a61a6ef503ee45d94e99 | Print table name in the preview | databaker/jupybakeutils.py | databaker/jupybakeutils.py | # HTML preview of the dimensions and table (will be moved to a function in databakersolo)
from IPython.display import display
from IPython.core.display import HTML
import databaker.constants
OBS = databaker.constants.OBS
# copied out again
def create_colourlist():
# Function to dynamically assign colours to dimen... | Python | 0 | @@ -2225,24 +2225,123 @@
key = %5B %5D%0A
+ key.append('Table: ')%0A key.append('%3Cb%3E')%0A key.append(tab.name); %0A key.append('%3C/b%3E ')%0A
key.appe
|
5e225294c133a4b90c81461d38ed582819638004 | Replace Unicode decoding processing | dataproperty/_converter.py | dataproperty/_converter.py | # encoding: utf-8
"""
.. codeauthor:: Tsuyoshi Hombashi <gogogo.vm@gmail.com>
"""
from __future__ import absolute_import
from __future__ import division
import abc
import re
from ._error import TypeConversionError
class ValueConverterInterface(object):
@abc.abstractmethod
def convert(self): # pragma: no ... | Python | 0.015828 | @@ -210,16 +210,50 @@
onError%0A
+from ._function import to_unicode%0A
%0A%0Aclass
@@ -1090,103 +1090,26 @@
-try:%0A return str(self._value)%0A except UnicodeEncodeError:%0A return
+return to_unicode(
self
@@ -1107,32 +1107,33 @@
code(self._value
+)
%0A%0A%0Aclass Integer
|
93d53e4dc47d31e1bca817ce4718032154814c80 | Clean up debug code. | datawire/views/entities.py | datawire/views/entities.py | from flask import Blueprint, request, url_for
from sqlalchemy.sql.functions import count
from sqlalchemy.sql.expression import or_, and_, func
from sqlalchemy.orm import aliased
from datawire.core import db, elastic, elastic_index
from datawire.auth import require
from datawire.model import Entity, Category, Match, Fr... | Python | 0.000005 | @@ -1078,25 +1078,24 @@
category'))%0A
-%0A
all_enti
@@ -1146,69 +1146,8 @@
n q%5D
-%0A # esq%5B'query'%5D%5B'filtered'%5D%5B'filter'%5D%5B'or'%5D.append(fq)
%0A%0A
@@ -1948,98 +1948,8 @@
es%0A%0A
- #esq%5B'facets'%5D%5B'global'%5D%5B'facet_filter'%5D = esq%5B'query'%5D%5B'filtered'%5D%5B'filter'%5D... |
74e9ab11dcaef919cba198aef6b8124dcfc3007c | handle leaving a room and entering again right after (fixes #17) | socketio/base_manager.py | socketio/base_manager.py | import itertools
import six
class BaseManager(object):
"""Manage client connections.
This class keeps track of all the clients and the rooms they are in, to
support the broadcasting of messages. The data used by this class is
stored in a memory structure, making it appropriate only for single proces... | Python | 0 | @@ -1977,32 +1977,101 @@
t to a room.%22%22%22%0A
+ self._clean_rooms() # ensure our rooms are up to date first%0A
if names
|
ec7b52b457e749b4b4a1e9110ede221f2f0d5fe9 | Fix fatal error in data processing. | data/propaganda2mongo.py | data/propaganda2mongo.py | import bson.json_util
from bson.objectid import ObjectId
import json
import sys
def main():
node_table = {}
while True:
line = sys.stdin.readline()
if not line:
break
record = json.loads(line)
ident = str(record["twitter_id"])
aoid = node_table.get(ident)... | Python | 0.000005 | @@ -1081,29 +1081,25 @@
node_table%5B
-ident
+p
%5D = oid = Ob
|
8fb80540499d0f303d68150304fd896367313f94 | remove incorrect is instance check in children_changed | IPython/html/widgets/widget_container.py | IPython/html/widgets/widget_container.py | """ContainerWidget class.
Represents a container that can be used to group other widgets.
"""
#-----------------------------------------------------------------------------
# Copyright (c) 2013, the IPython Development Team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the ... | Python | 0.000062 | @@ -1954,34 +1954,8 @@
None
- and isinstance(new, list)
:%0A
|
d24f3a1f008e4d2bef262a0f1253da04071a180d | move dataset crop into generic as it is used in several datasets | data_provider/dataset.py | data_provider/dataset.py | class AbstractDataset(object):
def __init__(self, games):
self.games = games
def get_data(self, indices=list()):
if len(indices) > 0:
return [self.games[i] for i in indices]
else:
return self.games
def n_examples(self):
return len(self.games)
class... | Python | 0.000001 | @@ -1,12 +1,26 @@
+import copy%0A%0A%0A
class Abstra
@@ -328,29 +328,27 @@
%0A%0Aclass
+Crop
Dataset
-Merger
(Abstrac
@@ -366,46 +366,181 @@
-def __init__(self, datasets):%0A
+%22%22%22%0A Each game contains no question/answers but a new object%0A %22%22%22%0A%0A def __init__(self, dataset, ... |
7907aeb6a006655ad96d5d3995b5fdbd4bf00d16 | fix usage of get_all_enabled_projects | scripts/pipeline_main.py | scripts/pipeline_main.py | #!/usr/bin/env python3
# Copyright 2020 Google LLC
#
# Licensed under the the Apache License v2.0 with LLVM Exceptions (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://llvm.org/LICENSE.txt
#
# Unless required by applicable law ... | Python | 0.000002 | @@ -1741,35 +1741,32 @@
linux_projects
-, _
= cp.get_all_en
@@ -1915,11 +1915,8 @@
ects
-, _
= c
|
c38ad4f02d6f036f23ef6d3c1e033e9843fb068a | comment unused tests | functional_tests/test_admins.py | functional_tests/test_admins.py | # -*- coding: utf-8 -*-
from __future__ import unicode_literals, absolute_import
from unittest import skip
from django.contrib.admin.templatetags.admin_urls import admin_urlname
from .base import FunctionalTest
from nowait.tests.factories import AdminF
from nowait.models import BookingType
@skip
class AdminTest(Fun... | Python | 0 | @@ -17,16 +17,18 @@
f-8 -*-%0A
+#
from __f
@@ -80,35 +80,12 @@
ort%0A
-%0Afrom unittest import skip%0A
+#%0A#
from
@@ -151,17 +151,20 @@
urlname%0A
-%0A
+#%0A#
from .ba
@@ -188,16 +188,18 @@
nalTest%0A
+#
from now
@@ -232,16 +232,18 @@
AdminF%0A
+#
from now
@@ -276,16 +276,14 @@
ype%0A
-%0A%0A@skip%0A
... |
18bc54f964a2925005543df8b4989271ad4464be | Fix inheritance in soc.models.base module. FieldsProxy inherited from DbModelForm which was deleted in previous commits (replace that with BaseForm). | app/soc/models/base.py | app/soc/models/base.py | #!/usr/bin/python2.5
#
# Copyright 2008 the Melange authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... | Python | 0.000001 | @@ -2608,15 +2608,12 @@
per.
-DbModel
+Base
Form
|
b4acc5d4c5f6b3e94225ca5926d06a50c511173c | add json exporter | furnito_crawler/json_manager.py | furnito_crawler/json_manager.py | class Json_Manager:
def __init__(self):
pass
| Python | 0 | @@ -1,8 +1,21 @@
+import json%0A%0A
class Js
@@ -63,8 +63,419 @@
pass%0A
+%0A def export_json(self, path, json_content):%0A '''%0A @usage: export dict to json and store on local storage%0A @arg: path, path to store json, string eg, 'downlaods/1.json'%0A @arg: json_content, the conten... |
7c230d442f758e9fd27c581e43f9e0f1a03d0ee9 | fix print | scripts/relay_control.py | scripts/relay_control.py | #!/usr/bin/python
import RPi.GPIO as GPIO
import argparse
import sys
GPIO.setwarnings(False)
GPIO.setmode(GPIO.BOARD)
# GPIO/BOARD | Relay IN | Rotors | Zone
# 22/15 | R2 IN2 | 1 | B
# 18/12 | R1 IN2 | 2 | A
# 24/18 | R1 IN3 | 3 | D
# 17/11 | R1 IN4 | 4 | C
# 27/13 ... | Python | 0.000575 | @@ -1673,23 +1673,33 @@
ate'%0A%09%09%09
-state =
+print 'states=' +
getAll(
@@ -1802,15 +1802,24 @@
%0A%09%09%09
+print '
state
-
=
+' +
GPI
@@ -1874,31 +1874,16 @@
leanup()
-%0A%09%09return state
%0A%0A%09def s
|
d7e197c8837f8482c29484dbc36a5d7b751cc076 | Add create method to ModelForm | app/soc/views/forms.py | app/soc/views/forms.py | #!/usr/bin/env python2.5
#
# Copyright 2011 the Melange authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applic... | Python | 0.000001 | @@ -1271,16 +1271,17 @@
oices)%0A%0A
+%0A
def choi
@@ -1451,16 +1451,17 @@
ields)%0A%0A
+%0A
class Mo
@@ -1638,16 +1638,16 @@
tems():%0A
-
yi
@@ -1681,16 +1681,1462 @@
name)%0A%0A
+ def create(self, commit=True, key_name=None, parent=None):%0A %22%22%22Save this form's cleaned data into a new model in... |
5bde6ca1fd62277463156875e874c4c6843923fd | Use the correct variable for the test | pytest-{{cookiecutter.plugin_name}}/tests/test_{{cookiecutter.plugin_name}}.py | pytest-{{cookiecutter.plugin_name}}/tests/test_{{cookiecutter.plugin_name}}.py | # -*- coding: utf-8 -*-
def test_bar_fixture(testdir):
"""Make sure that pytest accepts our fixture."""
# create a temporary pytest test module
testdir.makepyfile("""
def test_sth(bar):
assert bar == "europython2015"
""")
# run pytest with the following cmd args
result = t... | Python | 0.009051 | @@ -591,20 +591,16 @@
et == 0%0A
-
%0A%0Adef te
@@ -777,11 +777,36 @@
'
-cat
+%7B%7Bcookiecutter.plugin_name%7D%7D
:',%0A
|
13db02c23cac6ba0eb9116f1429b8d4a8001db6e | Update sequences.py | appdaemon/sequences.py | appdaemon/sequences.py | import uuid
import asyncio
from appdaemon.appdaemon import AppDaemon
class Sequences:
def __init__(self, ad: AppDaemon):
self.AD = ad
self.logger = ad.logging.get_child("_sequences")
async def run_sequence_service(self, namespace, domain, service, kwargs):
if "entity_id" not in kwar... | Python | 0.000001 | @@ -735,80 +735,16 @@
-await self.AD.state.add_entity(%0A %22rules%22,%0A
+entity =
%22se
@@ -774,38 +774,9 @@
nce)
-,
%0A
- %22idle%22,%0A
@@ -797,13 +797,13 @@
utes
-=%7B%0A
+ = %7B%0A
@@ -814,18 +814,16 @@
-
%22friendl
@@ -890,20 ... |
7f6430a7af1cee7f786849b9955179a813925c53 | Update Skylib version to 0.8.0 | apple/repositories.bzl | apple/repositories.bzl | # Copyright 2018 The Bazel Authors. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable la... | Python | 0.000003 | @@ -794,16 +794,32 @@
tp.bzl%22,
+ %22http_archive%22,
%22http_f
@@ -4044,38 +4044,36 @@
be(%0A
-git_repository
+http_archive
,%0A na
@@ -4097,32 +4097,44 @@
b%22,%0A
-remote =
+urls = %5B%0A
%22https://gi
@@ -4169,35 +4169,154 @@
ylib
-.git%22,%0A tag = %220.7.0
+/rele... |
44754da4076cdc5c39b24496da7566af61aa719b | Update apple_support and rules_swift dependencies. | apple/repositories.bzl | apple/repositories.bzl | # Copyright 2018 The Bazel Authors. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable la... | Python | 0.000152 | @@ -4344,9 +4344,9 @@
%220.
-4
+5
.0%22,
@@ -4583,9 +4583,9 @@
%220.
-6
+7
.0%22,
|
2ca7b67983e518bf684e4c5561c91d9f8946204d | Update xctestrunner dependency. | apple/repositories.bzl | apple/repositories.bzl | # Copyright 2018 The Bazel Authors. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable la... | Python | 0.000089 | @@ -5152,72 +5152,72 @@
= %22
-7c088842ebd4f47297a167e3f3df77eab54a8651f6b6d87e2c275a9e6c8adfe5
+9e46d5782a9dc7d40bc93c99377c091886c180b8c4ffb9f79a19a58e234cdb09
%22,%0A
@@ -5293,17 +5293,18 @@
oad/0.2.
-9
+10
/ios_tes
|
6ea62e02a8d966fa78889bca184d61e718c80f9c | add a request buffer in order to avoid duplicate queries at the same time; (3) | lib/rome/utils/MemoizationDecorator.py | lib/rome/utils/MemoizationDecorator.py | __author__ = 'jonathan'
import threading
import Queue
class MemoizationDecorator(object):
def __init__(self, decorated):
self.decorated = decorated
self.conditions_objects_dict = {}
self.memory = {}
self.insertion_lock = threading.Lock()
def __getattr__(self, attribute_name):... | Python | 0.000002 | @@ -387,24 +387,26 @@
ame)%0A
+ #
if hasattr(
@@ -438,32 +438,34 @@
all__%22):%0A
+ #
callable_ob
@@ -596,32 +596,34 @@
on_lock)%0A
+ #
return call
|
fcdac4f394afed0225ae6411f9e4c4c32d0fae0f | add all possible ids. Make factory classes | geetools/collection/sentinel.py | geetools/collection/sentinel.py | # coding=utf-8
""" Google Earth Engine Sentinel Collections """
from . import Collection, TODAY, Band
from .. import bitreader, cloud_mask, tools
from .. import algorithms as module_alg
import ee
NUNBERS = [1, 2]
PROCESSES = ['TOA', 'SR']
class Sentinel2(Collection):
""" Sentinel 2 Collection """
def __init_... | Python | 0.00013 | @@ -114,129 +114,120 @@
ort
-bitreader, cloud_mask, tools%0Afrom .. import algorithms as module_alg%0Aimport ee%0A%0ANUNBERS = %5B1, 2%5D%0APROCESSES = %5B'TOA', 'SR'
+tools%0Aimport ee%0A%0ANUNBERS = %5B1, 2%5D%0APROCESSES = %5B'TOA', 'SR'%5D%0AIDS = %5B%0A 'COPERNICUS/S2',%0A 'COPERNICUS/S2_SR'%0A
%5D%0A%0A%... |
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