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<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def log_memory(log, pref=None, lvl=logging.DEBUG, raise_flag=True): """Log the current memory usage. """
import os import sys cyc_str = "" KB = 1024.0 if pref is not None: cyc_str += "{}: ".format(pref) # Linux returns units in Bytes; OSX in kilobytes UNIT = KB*KB if sys.platform == 'darwin' else KB good = False # Use the `resource` module to check the maximum memory usage of...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def load_args(self, args, clargs): """Parse arguments and return configuration settings. """
# Parse All Arguments args = self.parser.parse_args(args=clargs, namespace=args) # Print the help information if no subcommand is given # subcommand is required for operation if args.subcommand is None: self.parser.print_help() args = None retur...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _setup_argparse(self): """Create `argparse` instance, and setup with appropriate parameters. """
parser = argparse.ArgumentParser( prog='catalog', description='Parent Catalog class for astrocats.') subparsers = parser.add_subparsers( description='valid subcommands', dest='subcommand') # Data Import # ----------- # Add the 'import' command, and rela...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _add_parser_arguments_import(self, subparsers): """Create parser for 'import' subcommand, and associated arguments. """
import_pars = subparsers.add_parser( "import", help="Import data.") import_pars.add_argument( '--update', '-u', dest='update', default=False, action='store_true', help='Only update catalog using live sources.') import_pars.add_argument( ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _add_parser_arguments_git(self, subparsers): """Create a sub-parsers for git subcommands. """
subparsers.add_parser( "git-clone", help="Clone all defined data repositories if they dont exist.") subparsers.add_parser( "git-push", help="Add all files to data repositories, commit, and push.") subparsers.add_parser( "git-pull", ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _add_parser_arguments_analyze(self, subparsers): """Create a parser for the 'analyze' subcommand. """
lyze_pars = subparsers.add_parser( "analyze", help="Perform basic analysis on this catalog.") lyze_pars.add_argument( '--count', '-c', dest='count', default=False, action='store_true', help='Determine counts of entries, files, etc.') ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def compress_gz(fname): """Compress the file with the given name and delete the uncompressed file. The compressed filename is simply the input filename with '.gz...
import shutil import gzip comp_fname = fname + '.gz' with codecs.open(fname, 'rb') as f_in, gzip.open( comp_fname, 'wb') as f_out: shutil.copyfileobj(f_in, f_out) os.remove(fname) return comp_fname
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def IOC_TYPECHECK(t): """ Returns the size of given type, and check its suitability for use in an ioctl command number. """
result = ctypes.sizeof(t) assert result <= _IOC_SIZEMASK, result return result
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def IOR(type, nr, size): """ An ioctl with read parameters. size (ctype type or instance) Type/structure of the argument passed to ioctl's "arg" argument. """
return IOC(IOC_READ, type, nr, IOC_TYPECHECK(size))
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def IOW(type, nr, size): """ An ioctl with write parameters. size (ctype type or instance) Type/structure of the argument passed to ioctl's "arg" argument. """
return IOC(IOC_WRITE, type, nr, IOC_TYPECHECK(size))
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def IOWR(type, nr, size): """ An ioctl with both read an writes parameters. size (ctype type or instance) Type/structure of the argument passed to ioctl's "arg" ...
return IOC(IOC_READ | IOC_WRITE, type, nr, IOC_TYPECHECK(size))
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _get_last_dirs(path, num=1): """Get a path including only the trailing `num` directories. Returns ------- last_path : str """
head, tail = os.path.split(path) last_path = str(tail) for ii in range(num): head, tail = os.path.split(head) last_path = os.path.join(tail, last_path) last_path = "..." + last_path return last_path
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def analyze(self, args): """Run the analysis routines determined from the given `args`. """
self.log.info("Running catalog analysis") if args.count: self.count() return
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def count(self): Returns ------- retvals : dict Dictionary of 'property-name: counts' pairs for further processing """
self.log.info("Running 'count'") retvals = {} # Numbers of 'tasks' num_tasks = self._count_tasks() retvals['num_tasks'] = num_tasks # Numbers of 'files' num_files = self._count_repo_files() retvals['num_files'] = num_files return retvals
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _count_tasks(self): """Count the number of tasks, both in the json and directory. Returns ------- num_tasks : int The total number of all tasks included in t...
self.log.warning("Tasks:") tasks, task_names = self.catalog._load_task_list_from_file() # Total number of all tasks num_tasks = len(tasks) # Number which are active by default num_tasks_act = len([tt for tt, vv in tasks.items() if vv.active]) # Number of python f...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _count_repo_files(self): """Count the number of files in the data repositories. `_COUNT_FILE_TYPES` are used to determine which file types are checked explic...
self.log.warning("Files:") num_files = 0 repos = self.catalog.PATHS.get_all_repo_folders() num_type = np.zeros(len(self._COUNT_FILE_TYPES), dtype=int) num_ign = 0 for rep in repos: # Get the last portion of the filepath for this repo last_path = _...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _file_nums_str(self, n_all, n_type, n_ign): """Construct a string showing the number of different file types. Returns ------- f_str : str """
# 'other' is the difference between all and named n_oth = n_all - np.sum(n_type) f_str = "{} Files".format(n_all) + " (" if len(n_type): f_str += ", ".join("{} {}".format(name, num) for name, num in zip(self._COUNT_FILE_TYPES, n_type)) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _count_files_by_type(self, path, pattern, ignore=True): """Count files in the given path, with the given pattern. If `ignore = True`, skip files in the `_IGN...
# Get all files matching the given path and pattern files = glob(os.path.join(path, pattern)) # Count the files files = [ff for ff in files if os.path.split(ff)[-1] not in self._IGNORE_FILES or not ignore] num_files = len(files) return n...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def bibcode_from_url(cls, url): """Given a URL, try to find the ADS bibcode. Currently: only `ads` URLs will work, e.g. Returns ------- code : str or 'None' The ...
try: code = url.split('/abs/') code = code[1].strip() return code except: return None
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _get_save_path(self, bury=False): """Return the path that this Entry should be saved to."""
filename = self.get_filename(self[self._KEYS.NAME]) # Put objects that shouldn't belong in this catalog in the boneyard if bury: outdir = self.catalog.get_repo_boneyard() # Get normal repository save directory else: repo_folders = self.catalog.PATHS.get...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _ordered(self, odict): """Convert the object into a plain OrderedDict."""
ndict = OrderedDict() if isinstance(odict, CatDict) or isinstance(odict, Entry): key = odict.sort_func else: key = None nkeys = list(sorted(odict.keys(), key=key)) for key in nkeys: if isinstance(odict[key], OrderedDict): odi...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_hash(self, keys=[]): """Return a unique hash associated with the listed keys."""
if not len(keys): keys = list(self.keys()) string_rep = '' oself = self._ordered(deepcopy(self)) for key in keys: string_rep += json.dumps(oself.get(key, ''), sort_keys=True) return hashlib.sha512(string_rep.encode()).hexdigest()[:16]
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _clean_quantity(self, quantity): """Clean quantity value before it is added to entry."""
value = quantity.get(QUANTITY.VALUE, '').strip() error = quantity.get(QUANTITY.E_VALUE, '').strip() unit = quantity.get(QUANTITY.U_VALUE, '').strip() kind = quantity.get(QUANTITY.KIND, '') if isinstance(kind, list) and not isinstance(kind, string_types): kind = [x.s...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _check_cat_dict_source(self, cat_dict_class, key_in_self, **kwargs): """Check that a source exists and that a quantity isn't erroneous."""
# Make sure that a source is given source = kwargs.get(cat_dict_class._KEYS.SOURCE, None) if source is None: raise CatDictError( "{}: `source` must be provided!".format(self[self._KEYS.NAME]), warn=True) # Check that source is a list of intege...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _add_cat_dict(self, cat_dict_class, key_in_self, check_for_dupes=True, compare_to_existing=True, **kwargs): """Add a `CatDict` to this `Entry`. CatDict only ...
# Make sure that a source is given, and is valid (nor erroneous) if cat_dict_class != Error: try: source = self._check_cat_dict_source(cat_dict_class, key_in_self, **kwargs) except CatDictError as err: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def init_from_file(cls, catalog, name=None, path=None, clean=False, merge=True, pop_schema=True, ignore_keys=[], compare_to_existing=True, try_gzip=False, filter_...
if not catalog: from astrocats.catalog.catalog import Catalog log = logging.getLogger() catalog = Catalog(None, log) catalog.log.debug("init_from_file()") if name is None and path is None: err = ("Either entry `name` or `path` must be specified t...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_alias(self, alias, source, clean=True): """Add an alias, optionally 'cleaning' the alias string. Calls the parent `catalog` method `clean_entry_name` - t...
if clean: alias = self.catalog.clean_entry_name(alias) self.add_quantity(self._KEYS.ALIAS, alias, source) return alias
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_error(self, value, **kwargs): """Add an `Error` instance to this entry."""
kwargs.update({ERROR.VALUE: value}) self._add_cat_dict(Error, self._KEYS.ERRORS, **kwargs) return
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_photometry(self, compare_to_existing=True, **kwargs): """Add a `Photometry` instance to this entry."""
self._add_cat_dict( Photometry, self._KEYS.PHOTOMETRY, compare_to_existing=compare_to_existing, **kwargs) return
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def merge_dupes(self): """Merge two entries that correspond to the same entry."""
for dupe in self.dupe_of: if dupe in self.catalog.entries: if self.catalog.entries[dupe]._stub: # merge = False to avoid infinite recursion self.catalog.load_entry_from_name( dupe, delete=True, merge=False) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_quantity(self, quantities, value, source, check_for_dupes=True, compare_to_existing=True, **kwargs): """Add an `Quantity` instance to this entry."""
success = True for quantity in listify(quantities): kwargs.update({QUANTITY.VALUE: value, QUANTITY.SOURCE: source}) cat_dict = self._add_cat_dict( Quantity, quantity, compare_to_existing=compare_to_existing, check_f...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_self_source(self): """Add a source that refers to the catalog itself. For now this points to the Open Supernova Catalog by default. """
return self.add_source( bibcode=self.catalog.OSC_BIBCODE, name=self.catalog.OSC_NAME, url=self.catalog.OSC_URL, secondary=True)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_source(self, allow_alias=False, **kwargs): """Add a `Source` instance to this entry."""
if not allow_alias and SOURCE.ALIAS in kwargs: err_str = "`{}` passed in kwargs, this shouldn't happen!".format( SOURCE.ALIAS) self._log.error(err_str) raise RuntimeError(err_str) # Set alias number to be +1 of current number of sources if SO...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_model(self, allow_alias=False, **kwargs): """Add a `Model` instance to this entry."""
if not allow_alias and MODEL.ALIAS in kwargs: err_str = "`{}` passed in kwargs, this shouldn't happen!".format( SOURCE.ALIAS) self._log.error(err_str) raise RuntimeError(err_str) # Set alias number to be +1 of current number of models if MODE...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_spectrum(self, compare_to_existing=True, **kwargs): """Add a `Spectrum` instance to this entry."""
spec_key = self._KEYS.SPECTRA # Make sure that a source is given, and is valid (nor erroneous) source = self._check_cat_dict_source(Spectrum, spec_key, **kwargs) if source is None: return None # Try to create a new instance of `Spectrum` new_spectrum = self....
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def check(self): """Check that the entry has the required fields."""
# Make sure there is a schema key in dict if self._KEYS.SCHEMA not in self: self[self._KEYS.SCHEMA] = self.catalog.SCHEMA.URL # Make sure there is a name key in dict if (self._KEYS.NAME not in self or len(self[self._KEYS.NAME]) == 0): raise ValueError("Entry name...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_aliases(self, includename=True): """Retrieve the aliases of this object as a list of strings. Arguments --------- includename : bool Include the 'name' p...
# empty list if doesnt exist alias_quanta = self.get(self._KEYS.ALIAS, []) aliases = [aq[QUANTITY.VALUE] for aq in alias_quanta] if includename and self[self._KEYS.NAME] not in aliases: aliases = [self[self._KEYS.NAME]] + aliases return aliases
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_entry_text(self, fname): """Retrieve the raw text from a file."""
if fname.split('.')[-1] == 'gz': with gz.open(fname, 'rt') as f: filetext = f.read() else: with codecs.open(fname, 'r') as f: filetext = f.read() return filetext
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_source_by_alias(self, alias): """Given an alias, find the corresponding source in this entry. If the given alias doesn't exist (e.g. there are no sources...
for source in self.get(self._KEYS.SOURCES, []): if source[self._KEYS.ALIAS] == alias: return source raise ValueError("Source '{}': alias '{}' not found!".format(self[ self._KEYS.NAME], alias))
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_stub(self): """Get a new `Entry` which contains the 'stub' of this one. The 'stub' is only the name and aliases. Usage: ----- To convert a normal entry i...
stub = type(self)(self.catalog, self[self._KEYS.NAME], stub=True) if self._KEYS.ALIAS in self: stub[self._KEYS.ALIAS] = self[self._KEYS.ALIAS] if self._KEYS.DISTINCT_FROM in self: stub[self._KEYS.DISTINCT_FROM] = self[self._KEYS.DISTINCT_FROM] if self._KEYS.RA in...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def is_erroneous(self, field, sources): """Check if attribute has been marked as being erroneous."""
if self._KEYS.ERRORS in self: my_errors = self[self._KEYS.ERRORS] for alias in sources.split(','): source = self.get_source_by_alias(alias) bib_err_values = [ err[ERROR.VALUE] for err in my_errors if err[ERROR.KIND]...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def is_private(self, key, sources): """Check if attribute is private."""
# aliases are always public. if key == ENTRY.ALIAS: return False return all([ SOURCE.PRIVATE in self.get_source_by_alias(x) for x in sources.split(',') ])
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def save(self, bury=False, final=False): """Write entry to JSON file in the proper location. Arguments --------- bury : bool final : bool If this is the 'final' ...
outdir, filename = self._get_save_path(bury=bury) if final: self.sanitize() # FIX: use 'dump' not 'dumps' jsonstring = json.dumps( { self[self._KEYS.NAME]: self._ordered(self) }, indent='\t' if sys.version_info[0] >= 3 el...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def sort_func(self, key): """Used to sort keys when writing Entry to JSON format. Should be supplemented/overridden by inheriting classes. """
if key == self._KEYS.SCHEMA: return 'aaa' if key == self._KEYS.NAME: return 'aab' if key == self._KEYS.SOURCES: return 'aac' if key == self._KEYS.ALIAS: return 'aad' if key == self._KEYS.MODELS: return 'aae' if ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def set_pd_mag_from_counts(photodict, c='', ec='', lec='', uec='', zp=DEFAULT_ZP, sig=DEFAULT_UL_SIGMA): """Set photometry dictionary from a counts measurement."...
with localcontext() as ctx: if lec == '' or uec == '': lec = ec uec = ec prec = max( get_sig_digits(str(c), strip_zeroes=False), get_sig_digits(str(lec), strip_zeroes=False), get_sig_digits(str(uec), strip_zeroes=False)) + 1 ctx.pr...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def set_pd_mag_from_flux_density(photodict, fd='', efd='', lefd='', uefd='', sig=DEFAULT_UL_SIGMA): """Set photometry dictionary from a flux density measurement....
with localcontext() as ctx: if lefd == '' or uefd == '': lefd = efd uefd = efd prec = max( get_sig_digits(str(fd), strip_zeroes=False), get_sig_digits(str(lefd), strip_zeroes=False), get_sig_digits(str(uefd), strip_zeroes=False)) + 1 ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _check(self): """Check that entry attributes are legal."""
# Run the super method super(Photometry, self)._check() err_str = None has_flux = self._KEYS.FLUX in self has_flux_dens = self._KEYS.FLUX_DENSITY in self has_u_flux = self._KEYS.U_FLUX in self has_u_flux_dens = self._KEYS.U_FLUX_DENSITY in self has_freq...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def sort_func(self, key): """Specify order for attributes."""
if key == self._KEYS.TIME: return 'aaa' if key == self._KEYS.MODEL: return 'zzy' if key == self._KEYS.SOURCE: return 'zzz' return key
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def by_resource_user_and_perm( cls, user_id, perm_name, resource_id, db_session=None ): """ return all instances by user name, perm name and resource id :param u...
db_session = get_db_session(db_session) query = db_session.query(cls.model).filter(cls.model.user_id == user_id) query = query.filter(cls.model.resource_id == resource_id) query = query.filter(cls.model.perm_name == perm_name) return query.first()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def tdSensor(self): """Get the next sensor while iterating. :return: a dict with the keys: protocol, model, id, datatypes. """
protocol = create_string_buffer(20) model = create_string_buffer(20) sid = c_int() datatypes = c_int() self._lib.tdSensor(protocol, sizeof(protocol), model, sizeof(model), byref(sid), byref(datatypes)) return {'protocol': self._to_str(protocol...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def tdSensorValue(self, protocol, model, sid, datatype): """Get the sensor value for a given sensor. :return: a dict with the keys: value, timestamp. """
value = create_string_buffer(20) timestamp = c_int() self._lib.tdSensorValue(protocol, model, sid, datatype, value, sizeof(value), byref(timestamp)) return {'value': self._to_str(value), 'timestamp': timestamp.value}
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def tdController(self): """Get the next controller while iterating. :return: a dict with the keys: id, type, name, available. """
cid = c_int() ctype = c_int() name = create_string_buffer(255) available = c_int() self._lib.tdController(byref(cid), byref(ctype), name, sizeof(name), byref(available)) return {'id': cid.value, 'type': ctype.value, 'name':...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def ziggurat_model_init( user=None, group=None, user_group=None, group_permission=None, user_permission=None, user_resource_permission=None, group_resource_permis...
models = ModelProxy() models.User = user models.Group = group models.UserGroup = user_group models.GroupPermission = group_permission models.UserPermission = user_permission models.UserResourcePermission = user_resource_permission models.GroupResourcePermission = group_resource_permissi...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def messages(request, year=None, month=None, day=None, template="gnotty/messages.html"): """ Show messages for the given query or day. """
query = request.REQUEST.get("q") prev_url, next_url = None, None messages = IRCMessage.objects.all() if hide_joins_and_leaves(request): messages = messages.filter(join_or_leave=False) if query: search = Q(message__icontains=query) | Q(nickname__icontains=query) messages = m...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def delete_expired_locks(self): """ Deletes all expired mutex locks if a ttl is provided. """
ttl_seconds = self.get_mutex_ttl_seconds() if ttl_seconds is not None: DBMutex.objects.filter(creation_time__lte=timezone.now() - timedelta(seconds=ttl_seconds)).delete()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def start(self): """ Acquires the db mutex lock. Takes the necessary steps to delete any stale locks. Throws a DBMutexError if it can't acquire the lock. """
# Delete any expired locks first self.delete_expired_locks() try: with transaction.atomic(): self.lock = DBMutex.objects.create(lock_id=self.lock_id) except IntegrityError: raise DBMutexError('Could not acquire lock: {0}'.format(self.lock_id))
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def stop(self): """ Releases the db mutex lock. Throws an error if the lock was released before the function finished. """
if not DBMutex.objects.filter(id=self.lock.id).exists(): raise DBMutexTimeoutError('Lock {0} expired before function completed'.format(self.lock_id)) else: self.lock.delete()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def decorate_callable(self, func): """ Decorates a function with the db_mutex decorator by using this class as a context manager around it. """
def wrapper(*args, **kwargs): try: with self: result = func(*args, **kwargs) return result except DBMutexError as e: if self.suppress_acquisition_exceptions: LOG.error(e) else: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def groupfinder(userid, request): """ Default groupfinder implementaion for pyramid applications :param userid: :param request: :return: """
if userid and hasattr(request, "user") and request.user: groups = ["group:%s" % g.id for g in request.user.groups] return groups return []
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def apply_repulsion(repulsion, nodes, barnes_hut_optimize=False, region=None, barnes_hut_theta=1.2): """ Iterate through the nodes or edges and apply the forces ...
if not barnes_hut_optimize: for i in range(0, len(nodes)): for j in range(0, i): repulsion.apply_node_to_node(nodes[i], nodes[j]) else: for i in range(0, len(nodes)): region.apply_force(nodes[i], repulsion, barnes_hut_theta)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def apply_gravity(repulsion, nodes, gravity, scaling_ratio): """ Iterate through the nodes or edges and apply the gravity directly to the node objects. """
for i in range(0, len(nodes)): repulsion.apply_gravitation(nodes[i], gravity / scaling_ratio)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def by_external_id_and_provider(cls, external_id, provider_name, db_session=None): """ Returns ExternalIdentity instance based on search params :param external_i...
db_session = get_db_session(db_session) query = db_session.query(cls.model) query = query.filter(cls.model.external_id == external_id) query = query.filter(cls.model.provider_name == provider_name) return query.first()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def user_by_external_id_and_provider( cls, external_id, provider_name, db_session=None ): """ Returns User instance based on search params :param external_id: :p...
db_session = get_db_session(db_session) query = db_session.query(cls.models_proxy.User) query = query.filter(cls.model.external_id == external_id) query = query.filter(cls.model.provider_name == provider_name) query = query.filter(cls.models_proxy.User.id == cls.model.local_user...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def by_user_and_perm(cls, user_id, perm_name, db_session=None): """ return by user and permission name :param user_id: :param perm_name: :param db_session: :retu...
db_session = get_db_session(db_session) query = db_session.query(cls.model).filter(cls.model.user_id == user_id) query = query.filter(cls.model.perm_name == perm_name) return query.first()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def node_is_subclass(cls, *subclass_names): """Checks if cls node has parent with subclass_name."""
if not isinstance(cls, (ClassDef, Instance)): return False # if cls.bases == YES: # return False for base_cls in cls.bases: try: for inf in base_cls.inferred(): # pragma no branch if inf.qname() in subclass_names: return True ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def is_field_method(node): """Checks if a call to a field instance method is valid. A call is valid if the call is a method of the underlying type. So, in a Stri...
name = node.attrname parent = node.last_child() inferred = safe_infer(parent) if not inferred: return False for cls_name, inst in FIELD_TYPES.items(): if node_is_instance(inferred, cls_name) and hasattr(inst, name): return True return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_node_parent_class(node): """Supposes that node is a mongoengine field in a class and tries to get its parent class"""
while node.parent: # pragma no branch if isinstance(node, ClassDef): return node node = node.parent
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_field_definition(node): """"node is a class attribute that is a mongoengine. Returns the definition statement for the attribute """
name = node.attrname cls = get_node_parent_class(node) definition = cls.lookup(name)[1][0].statement() return definition
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_field_embedded_doc(node): """Returns de ClassDef for the related embedded document in a embedded document field."""
definition = get_field_definition(node) cls_name = definition.last_child().last_child() cls = next(cls_name.infer()) return cls
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def node_is_embedded_doc_attr(node): """Checks if a node is a valid field or method in a embedded document. """
embedded_doc = get_field_embedded_doc(node.last_child()) name = node.attrname try: r = bool(embedded_doc.lookup(name)[1][0]) except IndexError: r = False return r
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _dispatcher(self, connection, event): """ This is the method in ``SimpleIRCClient`` that all IRC events get passed through. Here we map events to our own cus...
super(BaseBot, self)._dispatcher(connection, event) for handler in self.events[event.eventtype()]: handler(self, connection, event)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def message_channel(self, message): """ We won't receive our own messages, so log them manually. """
self.log(None, message) super(BaseBot, self).message_channel(message)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def on_pubmsg(self, connection, event): """ Log any public messages, and also handle the command event. """
for message in event.arguments(): self.log(event, message) command_args = filter(None, message.split()) command_name = command_args.pop(0) for handler in self.events["command"]: if handler.event.args["command"] == command_name: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def handle_command_event(self, event, command, args): """ Command handler - treats each word in the message that triggered the command as an argument to the comm...
argspec = getargspec(command) num_all_args = len(argspec.args) - 2 # Ignore self/event args num_pos_args = num_all_args - len(argspec.defaults or []) if num_pos_args <= len(args) <= num_all_args: response = command(self, event, *args) elif num_all_args == num_pos_ar...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def handle_timer_event(self, handler): """ Runs each timer handler in a separate greenlet thread. """
while True: handler(self) sleep(handler.event.args["seconds"])
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def handle_webhook_event(self, environ, url, params): """ Webhook handler - each handler for the webhook event takes an initial pattern argument for matching the...
for handler in self.events["webhook"]: urlpattern = handler.event.args["urlpattern"] if not urlpattern or match(urlpattern, url): response = handler(self, environ, url, params) if response: return response
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def DeviceFactory(id, lib=None): """Create the correct device instance based on device type and return it. :return: a :class:`Device` or :class:`DeviceGroup` ins...
lib = lib or Library() if lib.tdGetDeviceType(id) == const.TELLSTICK_TYPE_GROUP: return DeviceGroup(id, lib=lib) return Device(id, lib=lib)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def process_callback(self, block=True): """Dispatch a single callback in the current thread. :param boolean block: If True, blocks waiting for a callback to come...
try: (callback, args) = self._queue.get(block=block) try: callback(*args) finally: self._queue.task_done() except queue.Empty: return False return True
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def devices(self): """Return all known devices. :return: list of :class:`Device` or :class:`DeviceGroup` instances. """
devices = [] count = self.lib.tdGetNumberOfDevices() for i in range(count): device = DeviceFactory(self.lib.tdGetDeviceId(i), lib=self.lib) devices.append(device) return devices
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def sensors(self): """Return all known sensors. :return: list of :class:`Sensor` instances. """
sensors = [] try: while True: sensor = self.lib.tdSensor() sensors.append(Sensor(lib=self.lib, **sensor)) except TelldusError as e: if e.error != const.TELLSTICK_ERROR_DEVICE_NOT_FOUND: raise return sensors
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def controllers(self): """Return all known controllers. Requires Telldus core library version >= 2.1.2. :return: list of :class:`Controller` instances. """
controllers = [] try: while True: controller = self.lib.tdController() del controller["name"] del controller["available"] controllers.append(Controller(lib=self.lib, **controller)) except TelldusError as e: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_device(self, name, protocol, model=None, **parameters): """Add a new device. :return: a :class:`Device` or :class:`DeviceGroup` instance. """
device = Device(self.lib.tdAddDevice(), lib=self.lib) try: device.name = name device.protocol = protocol if model: device.model = model for key, value in parameters.items(): device.set_parameter(key, value) # R...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def add_group(self, name, devices): """Add a new device group. :return: a :class:`DeviceGroup` instance. """
device = self.add_device(name, "group") device.add_to_group(devices) return device
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def connect_controller(self, vid, pid, serial): """Connect a controller."""
self.lib.tdConnectTellStickController(vid, pid, serial)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def disconnect_controller(self, vid, pid, serial): """Disconnect a controller."""
self.lib.tdDisconnectTellStickController(vid, pid, serial)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def parameters(self): """Get dict with all set parameters."""
parameters = {} for name in self.PARAMETERS: try: parameters[name] = self.get_parameter(name) except AttributeError: pass return parameters
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_parameter(self, name): """Get a parameter."""
default_value = "$%!)(INVALID)(!%$" value = self.lib.tdGetDeviceParameter(self.id, name, default_value) if value == default_value: raise AttributeError(name) return value
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def set_parameter(self, name, value): """Set a parameter."""
self.lib.tdSetDeviceParameter(self.id, name, str(value))
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def devices_in_group(self): """Fetch list of devices in group."""
try: devices = self.get_parameter('devices') except AttributeError: return [] ctor = DeviceFactory return [ctor(int(x), lib=self.lib) for x in devices.split(',') if x]
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _prepPointsForSegments(points): """ Move any off curves at the end of the contour to the beginning of the contour. This makes segmentation easier. """
while 1: point = points[-1] if point.segmentType: break else: point = points.pop() points.insert(0, point) continue break
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _reversePoints(points): """ Reverse the points. This differs from the reversal point pen in RoboFab in that it doesn't worry about maintaing the start point ...
# copy the points points = _copyPoints(points) # find the first on curve type and recycle # it for the last on curve type firstOnCurve = None for index, point in enumerate(points): if point.segmentType is not None: firstOnCurve = index break lastSegmentType =...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _convertPointsToSegments(points, willBeReversed=False): """ Compile points into InputSegment objects. """
# get the last on curve previousOnCurve = None for point in reversed(points): if point.segmentType is not None: previousOnCurve = point.coordinates break assert previousOnCurve is not None # gather the segments offCurves = [] segments = [] for point in po...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _tValueForPointOnCubicCurve(point, cubicCurve, isHorizontal=0): """ Finds a t value on a curve from a point. The points must be originaly be a point on the c...
pt1, pt2, pt3, pt4 = cubicCurve a, b, c, d = bezierTools.calcCubicParameters(pt1, pt2, pt3, pt4) solutions = bezierTools.solveCubic(a[isHorizontal], b[isHorizontal], c[isHorizontal], d[isHorizontal] - point[isHorizontal]) solutions = [t for t in solutions if 0 <= t < 1] if not solutions and...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _scalePoints(points, scale=1, convertToInteger=True): """ Scale points and optionally convert them to integers. """
if convertToInteger: points = [ (int(round(x * scale)), int(round(y * scale))) for (x, y) in points ] else: points = [(x * scale, y * scale) for (x, y) in points] return points
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _scaleSinglePoint(point, scale=1, convertToInteger=True): """ Scale a single point """
x, y = point if convertToInteger: return int(round(x * scale)), int(round(y * scale)) else: return (x * scale, y * scale)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _estimateCubicCurveLength(pt0, pt1, pt2, pt3, precision=10): """ Estimate the length of this curve by iterating through it and averaging the length of the fl...
points = [] length = 0 step = 1.0 / precision factors = range(0, precision + 1) for i in factors: points.append(_getCubicPoint(i * step, pt0, pt1, pt2, pt3)) for i in range(len(points) - 1): pta = points[i] ptb = points[i + 1] length += _distance(pta, ptb) re...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def split(self, tValues): """ Split the segment according the t values """
if self.segmentType == "curve": on1 = self.previousOnCurve off1 = self.points[0].coordinates off2 = self.points[1].coordinates on2 = self.points[2].coordinates return bezierTools.splitCubicAtT(on1, off1, off2, on2, *tValues) elif self.segmentT...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def getData(self): """ Return a list of normalized InputPoint objects for the contour drawn with this pen. """
# organize the points into segments # 1. make sure there is an on curve haveOnCurve = False for point in self._points: if point.segmentType is not None: haveOnCurve = True break # 2. move the off curves to front of the list if ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def reCurveFromEntireInputContour(self, inputContour): """ Match if entire input contour matches entire output contour, allowing for different start point. """
if self.clockwise: inputFlat = inputContour.clockwiseFlat else: inputFlat = inputContour.counterClockwiseFlat outputFlat = [] for segment in self.segments: # XXX this could be expensive assert segment.segmentType == "flat" outp...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _is_custom_qs_manager(funcdef): """Checks if a function definition is a queryset manager created with the @queryset_manager decorator."""
decors = getattr(funcdef, 'decorators', None) if decors: for dec in decors.get_children(): try: if dec.name == 'queryset_manager': # pragma no branch return True except AttributeError: continue return False