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<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def clean(self): """Verifies that beginning date is before ending date."""
cleaned_data = super(DatasetUploadForm, self).clean() date_begin = self.cleaned_data.get('date_begin') date_end = self.cleaned_data.get('date_end') if date_end < date_begin: msg = u'End date should be after start date.' self.add_error('date_begin', msg) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _kwargs_to_attributes(self, kwargs): """ Put keys from `kwargs` to `self`, if the keys are already there. """
for key, val in kwargs.iteritems(): if key not in self.__dict__: raise ValueError( "Can't set %s parameter - it is not defined here!" % key ) self.__dict__[key] = val
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def assist(self, project_path, source, position, filename): """Return completion match and list of completion proposals :param project_path: absolute project pat...
return self._call('assist', project_path, source, position, filename)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_location(self, project_path, source, position, filename): """Return line number and file path where name under cursor is defined If line is None location...
return self._call('get_location', project_path, source, position, filename)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_docstring(self, project_path, source, position, filename): """Return signature and docstring for current cursor call context Some examples of call contex...
return self._call('get_docstring', project_path, source, position, filename)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_scope(self, project_path, source, lineno, filename, continous=True): """ Return scope name at cursor position For example:: class Foo: def foo(self): pa...
return self._call('get_scope', project_path, source, lineno, filename, continous=continous)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _masquerade(origin: str, orig: ServiceDefn, new: ServiceDefn, **map: str) -> str: """build an origin URL such that the orig has all of the mappings to new def...
origin: ParseResult = urlparse(origin) prev_maps = {} if origin.query: prev_maps = {k: v for k, v in parse_qsl(origin.query)} r_args = {} for new_k, orig_k in map.items(): assert new_k in new.rpcs, [new_k, new.rpcs] assert orig_k in orig.rpcs, [orig_k, orig.rpcs] ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def masquerade(origin: str, orig: Type[TA], new: Type[TB], **map: str) -> str: """Make ``orig`` appear as new"""
return _masquerade(origin, cache_get(orig), cache_get(new), **map)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def sendStatusPing(self): """ Sends a status ping to Redunda with the instance key specified while constructing the object. """
data = parse.urlencode({"key": self.key, "version": self.version}).encode() req = request.Request("https://redunda.sobotics.org/status.json", data) response = request.urlopen(req) jsonReturned = json.loads(response.read().decode("utf-8")) self.location = jsonReturned["locatio...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def uploadFile(self, filename, ispickle=False, athome=False): """ Uploads a single file to Redunda. :param str filename: The name of the file to upload :param bo...
print("Uploading file {} to Redunda.".format(filename)) _, tail = os.path.split(filename) url = "https://redunda.sobotics.org/bots/data/{}?key={}".format(tail, self.key) #Set the content type to 'application/octet-stream' header = {"Content-type": "application...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def downloadFile(self, filename, ispickle=False, athome=False): """ Downloads a single file from Redunda. :param str filename: The name of the file you want to d...
print("Downloading file {} from Redunda.".format(filename)) _, tail = os.path.split(filename) url = "https://redunda.sobotics.org/bots/data/{}?key={}".format(tail, self.key) requestToMake = request.Request(url) #Make the request. response = request.urlopen(requestToMa...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def uploadFiles(self): """ Uploads all the files in 'filesToSync' """
for each_file in self.filesToSync: self.uploadFile(each_file["name"], each_file["ispickle"], each_file["at_home"])
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def downloadFiles(self): """ Downloads all the files in 'filesToSync' """
for each_file in self.filesToSync: self.downloadFile(each_file["name"], each_file["ispickle"], each_file["at_home"])
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def getEvents(self): """ Gets all events from Redunda and returns them. :returns: Returns a dictionary of the events which were fetched. """
url = "https://redunda.sobotics.org/events.json" data = parse.urlencode({"key": self.key}).encode() req = request.Request(url, data) response = request.urlopen(req) return json.loads(response.read().decode("utf-8"))
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def configure_client(cls, host: str = 'localhost', port: int = 11211, **client_args): """ Configure a Memcached client. :param host: host name or ip address to c...
assert check_argument_types() client = Client(host, port, **client_args) return client
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _extract_features(self): """ Extracts and sets the feature data from the log file necessary for a reduction """
for parsed_line in self.parsed_lines: # If it's ssh, we can handle it if parsed_line.get('program') == 'sshd': result = self._parse_auth_message(parsed_line['message']) # Add the ip if we have it if 'ip' in result: se...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _analyze(self): """ Decide which lines should be filtered out """
pids = [] for ip in self.filter['ips']: if ip in self.ips_to_pids: for pid in self.ips_to_pids[ip]: pids.append(pid) for line in self.parsed_lines: if 'processid' in line and line['processid'] in pids: self.noisy_logs...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _to_epoch(self, ts): """ Adds a year to the syslog timestamp because syslog doesn't use years :param ts: The timestamp to add a year to :return: Date/time st...
year = self.year tmpts = "%s %s" % (ts, str(self.year)) new_time = int(calendar.timegm(time.strptime(tmpts, "%b %d %H:%M:%S %Y"))) # If adding the year puts it in the future, this log must be from last year if new_time > int(time.time()): year -= 1 tmpt...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _parse_auth_message(self, auth_message): """ Parse a message to see if we have ip addresses or users that we care about :param auth_message: The auth message...
result = {} has_matched = False for regex in REGEXES_INVALID_USER: # Check for the invalid user/ip messages m = re.search(regex, auth_message) if m and not has_matched: has_matched = True # Save the username and IP ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def read_until(data: bytes, *, return_tail: bool = True, from_=None) -> bytes: """ read until some bytes appear """
return (yield (Traps._read_until, data, return_tail, from_))
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def read_int(nbytes: int, *, byteorder: str = "big", from_=None) -> int: """ read some bytes as integer """
return (yield (Traps._read_int, nbytes, byteorder, from_))
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def send(self, data: bytes = b""): """ send data for parsing """
self.input.extend(data) self._process()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description:
def create_bokeh_server(io_loop, files, argvs, host, port): '''Start bokeh server with applications paths''' from bokeh.server.server import Server from bokeh.command.util import build_single_handler_applications # Turn file paths into bokeh apps apps = build_single_handler_applications(files, argv...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _generate_request_handler_proxy(handler_class, handler_args, name): """When a tornado.web.RequestHandler gets mounted we create a launcher function"""
@scope.inject def request_handler_wrapper(app, handler, **kwargs): handler = handler_class(app, handler.request, **handler_args) handler._execute([], **kwargs) request_handler_wrapper.__name__ = name request_handler_wrapper.handler_class = handler_class request_handler_wrapper.hand...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def setup(self): """setup routing table"""
# get all routes from submodules for prefix, routes in self.sub_rt: routes.prefix = self.prefix + prefix routes.setup() fn_name_prefixes = {} for fn_key, fn in routes.fn_namespace.items(): self.fn_namespace[routes.name + '.' + fn_key] = f...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_version(): """ Loads the current module version from version.py and returns it. :returns: module version identifier. :rtype: str """
local_results = {} version_file_path = os.path.join('pytextql', 'version.py') # This is compatible with py3k which removed execfile. with open(version_file_path, 'rb') as fin: # Compiling instead of passing the text straight to exec # associates any errors with the correct file name. ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def update(self, **args): """ Updates a Clip. Parameters: - args Dictionary of other fields Accepted fields can be found here: https://github.com/kippt/api-docum...
# JSONify our data. data = json.dumps(args) r = requests.put( "https://kippt.com/api/clips/%s" % (self.id), headers=self.kippt.header, data=data) return (r.json())
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def like(self): """ Like a clip. """
r = requests.post( "https://kippt.com/api/clips/%s/likes" % (self.id), headers=self.kippt.header ) return (r.json())
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def comment(self, body): """ Comment on a clip. Parameters: - body (Required) """
# Merge our url as a parameter and JSONify it. data = json.dumps({'body': body}) r = requests.post( "https://kippt.com/api/clips/%s/comments" (self.id), headers=self.kippt.header, data=data ) return (r.json())
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def unlike(self): """ Unlike a clip. """
r = requests.delete( "https://kippt.com/api/clips/%s/likes" % (self.id), headers=self.kippt.header) return (r.json())
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def to_json(value, pretty=False): """ Serializes the given value to JSON. :param value: the value to serialize :param pretty: whether or not to format the output...
options = { 'sort_keys': False, 'cls': BasicJSONEncoder, } if pretty: options['indent'] = 2 options['separators'] = (',', ': ') return json.dumps(value, **options)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def from_json(value, native_datetimes=True): """ Deserializes the given value from JSON. :param value: the value to deserialize :type value: str :param native_da...
hook = BasicJsonDecoder(native_datetimes=native_datetimes) result = json.loads(value, object_hook=hook) if native_datetimes and isinstance(result, string_types): return get_date_or_string(result) return result
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def to_yaml(value, pretty=False): """ Serializes the given value to YAML. :param value: the value to serialize :param pretty: whether or not to format the output...
if not yaml: raise NotImplementedError('No supported YAML library available') options = { 'Dumper': BasicYamlDumper, 'allow_unicode': True, } options['default_flow_style'] = not pretty return yaml.dump(value, **options).rstrip()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def from_yaml(value, native_datetimes=True): """ Deserializes the given value from YAML. :param value: the value to deserialize :type value: str :param native_da...
if not yaml: raise NotImplementedError('No supported YAML library available') if native_datetimes: loader = NativeDatesYamlLoader else: loader = StringedDatesYamlLoader return yaml.load(value, Loader=loader)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def to_toml(value, pretty=False): # noqa: unused-argument """ Serializes the given value to TOML. :param value: the value to serialize :param pretty: this argume...
if not toml: raise NotImplementedError('No supported TOML library available') return toml.dumps(make_toml_friendly(value)).rstrip()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def from_toml(value, native_datetimes=True): """ Deserializes the given value from TOML. :param value: the value to deserialize :type value: str :param native_da...
if not toml: raise NotImplementedError('No supported TOML library available') result = toml.loads(value) if native_datetimes: result = convert_datetimes(result) return result
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def merge_true_table(): """Merge all true table into single excel file. """
writer = pd.ExcelWriter("True Table.xlsx") for p in Path(__file__).parent.select_by_ext(".csv"): df = pd.read_csv(p.abspath, index_col=0) df.to_excel(writer, p.fname, index=True) writer.save()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: async def send(self, *args, **kwargs): """Send args and kwargs to all registered callbacks"""
for callback in self: res = callback(*args, **kwargs) if asyncio.iscoroutine(res) or isinstance(res, asyncio.Future): await res
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def setup_logging(config=None): """Setup logging configuration."""
# TODO: integrate in general config file print(__name__) if config and config.get('logging'): logging.config.dictConfig(config.get('logging')) else: logging.basicConfig(format='%(asctime)s %(levelname)s:%(message)s', level=logging.DEBUG)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _create_all_recommendations(cores, ip_views=False, config=None): """Calculate all recommendations in multiple processes."""
global _reco, _store _reco = GraphRecommender(_store) _reco.load_profile('Profiles') if ip_views: _reco.load_profile('Profiles_IP') manager = Manager() record_list = manager.list(_reco.all_records.keys()) # record_list = manager.list(list(_reco.all_records.keys())[:10]) num_re...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def fetch_weeks(self, weeks, overwrite=False): """Fetch and cache the requested weeks."""
esf = ElasticsearchFetcher(self.store, self.config) for year, week in weeks: print("Fetch {}-{}".format(year, week)) esf.fetch(year, week, overwrite)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def create_all_recommendations(self, cores, ip_views=False): """Calculate the recommendations for all records."""
global _store _store = self.store _create_all_recommendations(cores, ip_views, self.config)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def table_dataset_database_table( table = None, include_attributes = None, rows_limit = None, print_progress = False, ): """ Create a pyprel table contents list ...
if print_progress: import shijian progress = shijian.Progress() progress.engage_quick_calculation_mode() number_of_rows = len(table) if include_attributes: columns = include_attributes else: columns = table.columns table_contents = [columns] for ind...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description:
def simple_nearest_indices(xs,res): ''' Simple nearest interpolator that interpolates based on the minima and maxima of points based on the passed resolution in res. Parameters: ----------- xs -- A collection of `ndim` arrays of points. res -- List of resolutions. ''' maxs = [...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def clear(self): """ Clears all of the build variables. """
for variable in self._project.variables.list(all=True): variable.delete()
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _resolved_type(self): """Return the type for the columns, and a flag to indicate that the column has codes."""
import datetime self.type_ratios = {test: (float(self.type_counts[test]) / float(self.count)) if self.count else None for test, testf in tests + [(None, None)]} # If it is more than 5% str, it's a str try: if self.type_ratios.get(text_type,0) +...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def promote_type(orig_type, new_type): """Given a table with an original type, decide whether a new determination of a new applicable type should overide the exi...
if not new_type: return orig_type if not orig_type: return new_type try: orig_type = orig_type.__name__ except AttributeError: pass try: new_type = new_type.__name__ except AttributeError: pass ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def data_from_repaircafe_org(): """Gets data from repaircafe_org."""
# Use Chrome as a browser browser = webdriver.Chrome() # Use PhantomJS as a browser # browser = webdriver.PhantomJS('phantomjs') browser.get("https://repaircafe.org/en/?s=Contact+the+local+organisers") browser.maximize_window() # Iterate over results (the #viewmore_link button) viewmo...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_labs(format): """Gets Repair Cafe data from repairecafe.org."""
data = data_from_repaircafe_org() repaircafes = {} # Load all the Repair Cafes for i in data: # Create a lab current_lab = RepairCafe() # Add existing data from first scraping current_lab.name = i["name"] slug = i["url"].replace("https://repaircafe.org/locatio...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def archive_if_exists(filename): """ Move `filename` out of the way, archiving it by appending the current datetime Can be a file or a directory """
if os.path.exists(filename): current_time = datetime.datetime.now() dt_format = '%Y-%m-%dT%H:%M:%S%z' timestamp = current_time.strftime(dt_format) dst = filename + '_' + timestamp shutil.move(filename, dst)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def list_files(dirname, extension=None): """ List all files in directory `dirname`, option to filter on file extension """
f = [] for (dirpath, dirnames, filenames) in os.walk(dirname): f.extend(filenames) break if extension is not None: # Filter on extension filtered = [] for filename in f: fn, ext = os.path.splitext(filename) if ext.lower() == '.' + extension.lo...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def filename_addstring(filename, text): """ Add `text` to filename, keeping the extension in place For example when adding a timestamp to the filename """
fn, ext = os.path.splitext(filename) return fn + text + ext
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_file_contents(filename): """ Read file contents from file `filename` """
data = None try: with open(filename) as pf: data = pf.read() except IOError: # File not found, return None pass return data
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def parse_name(cls, name): """ Parses a name into a dictionary of identified subsections with accompanying information to correctly identify and replace if neces...
parse_dict = dict.fromkeys(cls.PARSABLE, None) parse_dict['date'] = cls.get_date(name) parse_dict['version'] = cls.get_version(name) parse_dict['udim'] = cls.get_udim(name) parse_dict['side'] = cls.get_side(name) parse_dict['basename'] = cls.get_base_naive(cls._reduce_na...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_side(cls, name, ignore=''): """ Checks a string for a possible side string token, this assumes its on its own and is not part of or camel cased and combi...
for side in cls.CONFIG_SIDES: """ Tried using a regex, however it would've taken too long to debug side_regex = cls._build_abbreviation_regex(side) result = cls._generic_search(name, side_regex, metadata={'side': side}, ignore=ignore) if result: r...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_discipline(cls, name, ignore='', min_length=3): """ Checks a string for a possible discipline string token, this assumes its on its own and is not part o...
for discipline in cls.CONFIG_DISCIPLINES: re_abbr = '({RECURSE}(?=[0-9]|[A-Z]|{SEPARATORS}))'.format( RECURSE=cls._build_abbreviation_regex(discipline), SEPARATORS=cls.REGEX_SEPARATORS) matches = cls._get_regex_search(name, re_abbr, ignore=ignore) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_string_camel_patterns(cls, name, min_length=0): """ Finds all permutations of possible camel casing of the given name :param name: str, the name we need ...
# Have to check for longest first and remove duplicates patterns = [] abbreviations = list(set(cls._get_abbreviations(name, output_length=min_length))) abbreviations.sort(key=len, reverse=True) for abbr in abbreviations: # We won't check for abbreviations that are s...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _reduce_name(cls, name, parse_dict): """ Reduces a name against matches found in a parse dictionary :param name: str, name to be reduced :param parse_dict: d...
# Now remove all found entries to make basename regex have an easier time removal_indices = [] for section, match in iteritems(parse_dict): try: matches = [] if isinstance(match, dict) and 'compound_matches' in match: matches = mat...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _get_regex_search(input_string, regex, metadata={}, match_index=None, ignore='', flags=0): """ Using this so that all results from the functions return simil...
generator = re.compile(regex, flags=flags).finditer(input_string) matches = [] for obj in generator: try: span_a = obj.span(1) group_a = obj.group(1) except IndexError: span_a = obj.span() group_a = obj.grou...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _generic_search(cls, name, search_string, metadata={}, ignore=''): """ Searches for a specific string given three types of regex search types. Also auto-chec...
patterns = [cls.REGEX_ABBR_SEOS, cls.REGEX_ABBR_ISLAND, cls.REGEX_ABBR_CAMEL] if not search_string[0].isupper(): patterns.remove(cls.REGEX_ABBR_CAMEL) for pattern in patterns: search_result = cls._get_regex_search(name, ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _get_abbreviations(input_string, output_length=0): """ Generates abbreviations for input_string :param input_string: str, name of object :param output_length...
for i, j in itertools.combinations(range(len(input_string[1:]) + 1), 2): abbr = input_string[0] + input_string[1:][i:j] if len(abbr) >= output_length: yield abbr elif output_length == 0: yield abbr # Have to add the solitary letter as ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _get_casing_permutations(cls, input_string): """ Takes a string and gives all possible permutations of casing for comparative purposes :param input_string: s...
if not input_string: yield "" else: first = input_string[:1] for sub_casing in cls._get_casing_permutations(input_string[1:]): yield first.lower() + sub_casing yield first.upper() + sub_casing
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def _string_remove_slice(input_str, start, end): """ Removes portions of a string :param input_str: str, input string :param start: int, end search index :param ...
if 0 <= start < end <= len(input_str): return input_str[:start] + input_str[end:] return input_str
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description:
def getvector(d,s): ''' Get a vector flds data. Parameters: ----------- d -- flds data. s -- key for the data. ''' return np.array([d[s+"x"],d[s+"y"],d[s+"z"]]);
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description:
def restrict(d,restrict): ''' Restrict data by indices. Parameters: ---------- d -- the flds/sclr data restrict -- a tuple of [xmin,xmax,...] etx ''' notqs = ['t','xs','ys','zs','fd','sd'] keys = [k for k in d if k not in notqs]; if len(restrict) == 2: for k i...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def create_logger(name, level='INFO'): """ Creates a new ready-to-use logger. :param name: new logger's name :type name: str :param level: default logging level....
formatter = ColorFormatter(LOG_FORMAT, DATE_FORMAT) if not isinstance(logging.getLevelName(level), int): level = 'INFO' handler = logging.StreamHandler() handler.setFormatter(formatter) logger = logging.getLogger(name) logger.setLevel(level) logger.addHandler(handler) return log...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def build_contributors(authors, contrib_type, competing_interests=None): """ Given a list of authors from the parser, instantiate contributors objects and build ...
contributors = [] for author in authors: contributor = None author_contrib_type = contrib_type surname = author.get("surname") given_name = author.get("given-names") collab = author.get("collab") # Small hack for on-behalf-of type when building authors ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def build_funding(award_groups): """ Given a funding data, format it """
if not award_groups: return [] funding_awards = [] for award_groups_item in award_groups: for award_group_id, award_group in iteritems(award_groups_item): award = ea.FundingAward() award.award_group_id = award_group_id if award_group.get('id-type') == "...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def build_datasets(datasets_json): """ Given datasets in JSON format, build and return a list of dataset objects """
if not datasets_json: return [] datasets = [] dataset_type_map = OrderedDict([ ('generated', 'datasets'), ('used', 'prev_published_datasets') ]) dataset_type_map_found = [] # First look for the types of datasets present for dataset_key, dataset_type in iteritems(dat...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def build_data_availability(datasets_json): """ Given datasets in JSON format, get the data availability from it if present """
data_availability = None if 'availability' in datasets_json and datasets_json.get('availability'): # only expect one paragraph of text data_availability = datasets_json.get('availability')[0].get('text') return data_availability
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def component_title(component): """ Label, title and caption Title is the label text plus the title text Title may contain italic tag, etc. """
title = u'' label_text = u'' title_text = u'' if component.get('label'): label_text = component.get('label') if component.get('title'): title_text = component.get('title') title = unicode_value(label_text) if label_text != '' and title_text != '': title += ' ' ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def build_components(components): """ Given parsed components build a list of component objects """
component_list = [] for comp in components: component = ea.Component() # id component.id = comp.get('id') # type component.type = comp.get('type') # asset, if available component.asset = comp.get('asset') # DOI component.doi = comp.ge...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def build_related_articles(related_articles): """ Given parsed data build a list of related article objects """
article_list = [] for related_article in related_articles: article = ea.RelatedArticle() if related_article.get('xlink_href'): article.xlink_href = related_article.get('xlink_href') if related_article.get('related_article_type'): article.related_article_type = r...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description:
def build_pub_dates(article, pub_dates): "convert pub_dates into ArticleDate objects and add them to article" for pub_date in pub_dates: # always want a date type, take it from pub-type if must if pub_date.get('date-type'): date_instance = ea.ArticleDate(pub_date.get('date-type'), ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description:
def build_self_uri_list(self_uri_list): "parse the self-uri tags, build Uri objects" uri_list = [] for self_uri in self_uri_list: uri = ea.Uri() utils.set_attr_if_value(uri, 'xlink_href', self_uri.get('xlink_href')) utils.set_attr_if_value(uri, 'content_type', self_uri.get('content-t...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def clean_abstract(abstract, remove_tags=['xref', 'ext-link', 'inline-formula', 'mml:*']): """ Remove unwanted tags from abstract string, parsing it as HTML, the...
if remove_tags: for tag_name in remove_tags: abstract = utils.remove_tag(tag_name, abstract) return abstract
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def build_articles_from_article_xmls(article_xmls, detail="full", build_parts=None, remove_tags=None): """ Given a list of article XML filenames, convert to arti...
poa_articles = [] for article_xml in article_xmls: print("working on ", article_xml) article, error_count = build_article_from_xml(article_xml, detail, build_parts, remove_tags) if error_count == 0: poa_articles.append(...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def accounts(): """Load the accounts YAML file and return a dict """
import yaml for path in account_files: try: c_dir = os.path.dirname(path) if not os.path.exists(c_dir): os.makedirs(c_dir) with open(path, 'rb') as f: return yaml.load(f)['accounts'] except (OSError, IOError) as e: ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_logger( name, file_name=None, stream=None, template=None, propagate=False): """Get a logger by name if file_name is specified, and the dirname() of the f...
logger = logging.getLogger(name) if propagate is not None: logger.propagate = propagate for handler in logger.handlers: logger.removeHandler(handler) if not template: template = "%(name)s %(process)s %(levelname)s %(message)s" formatter = logging.Formatter(template) ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def md5_for_file(f, block_size=2 ** 20): """Generate an MD5 has for a possibly large file by breaking it into chunks"""
import hashlib md5 = hashlib.md5() try: # Guess that f is a FLO. f.seek(0) while True: data = f.read(block_size) if not data: break md5.update(data) return md5.hexdigest() except AttributeError as e: # Nope, ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def subcache(self, path): """Clone this case, and extend the prefix"""
cache = self.clone() cache.prefix = os.path.join(cache.prefix if cache.prefix else '', path) return cache
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def store_list(self, cb=None): """List the cache and store it as metadata. This allows for getting the list from HTTP caches and other types where it is not poss...
from StringIO import StringIO import json d = {} for k, v in self.list().items(): if 'caches' in v: del v['caches'] d[k] = v strio = StringIO(json.dumps(d)) sink = self.put_stream('meta/_list.json') copy_file_or_flo...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def attach(self, upstream): """Attach an upstream to the last upstream. Can be removed with detach"""
if upstream == self.last_upstream(): raise Exception("Can't attach a cache to itself") self._prior_upstreams.append(self.last_upstream()) self.last_upstream().upstream = upstream
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description:
def get_upstream(self, type_): '''Return self, or an upstream, that has the given class type. This is typically used to find upstream s that impoement the RemoteInterface ''' if isinstance(self, type_): return self elif self.upstream and isinstance(self.upstream, typ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def decode(self, a_bytes, encoding): """A 'try as much as we can' strategy decoding method. 'try as much as we can' feature: Some time most of byte are encoded c...
try: return (a_bytes.decode(encoding), encoding) except Exception as e: ind = self.catch_position_in_UnicodeDecodeError_message(str(e)) return (a_bytes[:ind].decode(encoding) + self.decode(a_bytes[(ind + 2):], encoding)[0], encoding)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def autodecode(self, a_bytes): """Automatically detect encoding, and decode bytes. """
try: # 如果装了chardet analysis = chardet.detect(a_bytes) if analysis["confidence"] >= 0.75: # 如果可信 return (self.decode(a_bytes, analysis["encoding"])[0], analysis["encoding"]) else: # 如果不可信, 打印异常 raise Exception("Failed...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def login(self, url, payload): """Performe log in. url is the login page url, for example: https://login.secureserver.net/index.php? payload includes the account...
self.auth = requests.Session() try: self.auth.post(url, data=payload, timeout=self.default_timeout) print("successfully logged in to %s" % url) return True except: return False
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def get_response(self, url, timeout=None): """Return http request response. """
if not timeout: timeout = self.default_timeout if self.default_sleeptime: time.sleep(self.default_sleeptime) try: return self.auth.get(url, headers=self.default_header, timeout=self.default_timeout) except: return None
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def html_with_encoding(self, url, timeout=None, encoding="utf-8"): """Manually get html with user encoding setting. """
response = self.get_response(url, timeout=timeout) if response: return self.decoder.decode(response.content, encoding)[0] else: return None
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def html(self, url, timeout=None): """High level method to get http request response in text. smartly handle the encoding problem. """
response = self.get_response(url, timeout=timeout) if response: domain = self.get_domain(url) if domain in self.domain_encoding_map: # domain have been visited try: # apply extreme decoding html = self.decoder.decode(response.content, ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def binary(self, url, timeout=None): """High level method to get http request response in bytes. """
response = self.get_response(url, timeout=timeout) if response: return response.content else: return None
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def download(self, url, dst, timeout=None): """Download the binary file at url to distination path. """
response = self.get_response(url, timeout=timeout) if response: with open(dst, "wb") as f: for block in response.iter_content(1024): if not block: break f.write(block)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def changed(self, src, path, dest): """Called whenever `path` is changed in the source folder `src`. `dest` is the output folder. The default implementation call...
try: mtime = os.path.getmtime(os.path.join(src, path)) self._build(src, path, dest, mtime) except EnvironmentError as e: logging.error("{0} is inaccessible: {1}".format( termcolor.colored(path, "yellow", attrs=["bold"]), e.args[0] ...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def build(self, input_path, output_paths): """Should be extended by subclasses to actually do stuff. By default this will copy `input` over every file in the `ou...
for output in output_paths: shutil.copy(input_path, output_paths)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def rebuild_references(self, src, path, reject=None): """Updates `parents` and `children` to be in sync with the changes to `src` if any."""
if reject is None: reject = set() reject.add(path) try: filename = os.path.join(src, path) mtime = os.path.getmtime(filename) contents = open(filename) except EnvironmentError: raise ValueError("Unable to open '{0}'".format(pa...
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def deleted(self, src, path): """Update the reference tree when a handled file is deleted."""
if self.parents[path] is not None: for parent in self.parents[path]: self.children[parent].remove(path) if not self.children[parent]: del self.children[parent] del self.parents[path]
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def clearScreen(cls): """Clear the screen"""
if "win32" in sys.platform: os.system('cls') elif "linux" in sys.platform: os.system('clear') elif 'darwin' in sys.platform: os.system('clear') else: cit.err("No clearScreen for " + sys.platform)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def getPyCmd(cls): """get OS's python command"""
if "win32" in sys.platform: return 'py' elif "linux" in sys.platform: return 'python3' elif 'darwin' in sys.platform: return 'python3' else: cit.err("No python3 command for " + sys.platform)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def runCmd(cls, cmd): """run command and show if success or failed Args: cmd: string Returns: bool: if this command run successfully """
cit.echo(cmd, "command") result = os.system(cmd) cls.checkResult(result)
<SYSTEM_TASK:> Solve the following problem using Python, implementing the functions described below, one line at a time <END_TASK> <USER_TASK:> Description: def readCmd(cls, cmd): """run command and return the str format stdout Args: cmd: string Returns: str: what the command's echo """
args = shlex.split(cmd) proc = subprocess.Popen(args, stdout=subprocess.PIPE) (proc_stdout, proc_stderr) = proc.communicate(input=None) # proc_stdin return proc_stdout.decode()