text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
values | hash stringlengths 16 16 | score float64 7 8.5 | stars int64 0 237k |
|---|---|---|---|---|---|---|
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
:Mod:
test_node_store_scope
:Synopsis:
Tests context isolation of node store. Tests both:
Isolation: two concurrent “requests” (threads) don’t see each other’s nodes when each uses its own store scope.
Cleanup: the store is cleared even if an e... | PASTAplus/metapype-eml | tests/test_node_store_scope.py | .py | 8898ca21073e8622 | 7.89 | 5 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
:Mod:
test_normalize
:Synopsis:
:Author:
servilla
:Created:
2/17/24
"""
import daiquiri
from metapype.model.normalize import normalize
logger = daiquiri.getLogger(__name__)
def test_normalize_xml():
test_xml = "<?xml version=\"1.0\"?><test a=\" t... | PASTAplus/metapype-eml | tests/test_normalize.py | .py | 5fe8a995bc93d1d3 | 7.89 | 5 |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
:Mod: convert
:Synopsis:
:Author:
servilla
:Created:
2/9/21
"""
from datetime import date
import json
import logging
import os
from pathlib import Path
import click
import daiquiri
cwd = os.path.dirname(os.path.realpath(__file__))
logfile = cwd + "/conver... | PASTAplus/metapype-eml | utils/convert.py | .py | 1d6c252435dcebf0 | 7.39 | 5 |
"""``logging`` propagation: a record climbs the logger hierarchy.
A child logger with no handlers still gets its records delivered -- they
propagate up the chain until some ancestor's handler takes them.
"""
from __future__ import annotations
import logging
def chain_delivery(sink: list[str]) -> None:
"""Log o... | SuperElectron/python-design-patterns | patterns/behavioral/chain_of_responsibility/real_world.py | .py | be68db5f7765c9bc | 7.15 | 1 |
"""The Gang of Four Command: interface, concrete commands, invoker with undo.
A text editor whose operations are objects. The invoker keeps history, so
undo is popping the stack and asking the command to reverse itself.
"""
from __future__ import annotations
from abc import ABC, abstractmethod
class Document:
... | SuperElectron/python-design-patterns | patterns/behavioral/command/naive.py | .py | 1d88728fc565785f | 7.15 | 1 |
"""Commands as callables.
For plain deferral, ``functools.partial`` packages the call and its
arguments. For undo, a command is a (do, undo) pair -- here a small frozen
dataclass of two callables, still no interface or hierarchy.
"""
from __future__ import annotations
from collections.abc import Callable
from datacl... | SuperElectron/python-design-patterns | patterns/behavioral/command/pythonic.py | .py | 65c03113fcb0d4c1 | 7.15 | 1 |
"""Callbacks in the stdlib are the Command pattern.
``sched.scheduler`` queues (time, priority, action, arguments) records --
commands with metadata -- and its run loop is the invoker.
"""
from __future__ import annotations
import sched
class FakeClock:
"""A clock the scheduler advances by 'sleeping' -- tests ... | SuperElectron/python-design-patterns | patterns/behavioral/command/real_world.py | .py | 01babfd978f04619 | 7.15 | 1 |
"""The same grammar as data: nested tuples, one recursive evaluator.
Extending the language is a dict entry, not a class.
"""
from __future__ import annotations
import operator
from collections.abc import Callable
Expr = int | tuple[str, "Expr", "Expr"]
OPS: dict[str, Callable[[int, int], int]] = {
"+": operat... | SuperElectron/python-design-patterns | patterns/behavioral/interpreter/pythonic.py | .py | 97449c787fc49d9a | 7.15 | 1 |
"""Interpreting with Python's own parser: a safe arithmetic evaluator.
``ast.parse`` builds the tree; a restricted walk evaluates only the node
types we allow. User input never reaches eval().
"""
from __future__ import annotations
import ast
import operator
from collections.abc import Callable
_BINOPS: dict[type[a... | SuperElectron/python-design-patterns | patterns/behavioral/interpreter/real_world.py | .py | 4e47aac108c983a9 | 7.15 | 1 |
"""The iterator protocol implemented by hand.
The guide's three rules:
1. the iterable's ``__iter__`` returns a new iterator;
2. the iterator's ``__next__`` returns items and raises ``StopIteration``;
3. the iterator's ``__iter__`` returns itself.
"""
from __future__ import annotations
class OddNumbers:
"""An i... | SuperElectron/python-design-patterns | patterns/behavioral/iterator/naive.py | .py | 63818fd0707a5e6e | 7.15 | 1 |
"""Generators: the iterator pattern as a language feature.
A function with ``yield`` returns an object that already implements
``__iter__`` and ``__next__``; the cursor state lives in the paused frame.
An ``__iter__`` written as a generator makes a class iterable in one line.
"""
from __future__ import annotations
f... | SuperElectron/python-design-patterns | patterns/behavioral/iterator/pythonic.py | .py | 2fb1f10c5b4af265 | 7.15 | 1 |
"""``itertools``: the stdlib's iterator toolbox.
Iterators compose: ``count`` is infinite, ``islice`` bounds it, and nothing
is computed until iteration demands it.
"""
from __future__ import annotations
import itertools
from collections.abc import Iterator
def first_n_odd_squares(n: int) -> Iterator[int]:
"""... | SuperElectron/python-design-patterns | patterns/behavioral/iterator/real_world.py | .py | 50b3e3a885a584dd | 7.15 | 1 |
"""The mediator without a Colleague hierarchy.
Widgets take a ``notify`` callable; the coordinator holds every interaction
rule in one place and the widgets hold none.
"""
from __future__ import annotations
from collections.abc import Callable
class TextField:
def __init__(self, notify: Callable[[], None]) -> ... | SuperElectron/python-design-patterns | patterns/behavioral/mediator/pythonic.py | .py | a672c38e0bef6986 | 7.15 | 1 |
"""``queue.Queue``: the mediator between threads.
Producer and consumer never reference each other; the queue owns all the
coordination (ordering, blocking, thread safety).
"""
from __future__ import annotations
import queue
import threading
def pipeline(items: list[str]) -> list[str]:
"""Producer and consumer... | SuperElectron/python-design-patterns | patterns/behavioral/mediator/real_world.py | .py | a0dc547d763b9aff | 7.15 | 1 |
"""The Gang of Four Memento: originator, opaque memento, caretaker."""
from __future__ import annotations
class Memento:
"""Opaque by convention: only the originator reads its fields."""
def __init__(self, text: str, cursor: int) -> None:
self._text = text
self._cursor = cursor
class Edito... | SuperElectron/python-design-patterns | patterns/behavioral/memento/naive.py | .py | 7e69b2ce1a8f43c8 | 7.15 | 1 |
"""``pickle``: mementos that survive the process.
dumps() produces an opaque snapshot; loads() restores an equivalent object
-- checkpoint/rollback for anything picklable.
"""
from __future__ import annotations
import pickle
from dataclasses import dataclass, field
@dataclass
class Game:
level: int = 1
inv... | SuperElectron/python-design-patterns | patterns/behavioral/memento/real_world.py | .py | 7db771bfc2f8b144 | 7.15 | 1 |
"""``Future.add_done_callback``: the stdlib observer.
Any callable can subscribe to a future's completion; late subscribers to an
already-resolved future fire immediately.
"""
from __future__ import annotations
from concurrent.futures import Future
def observe_completion() -> list[str]:
events: list[str] = []
... | SuperElectron/python-design-patterns | patterns/behavioral/observer/real_world.py | .py | 786141405956edcc | 7.15 | 1 |
"""Two pythonic state machines.
1. Enum + transition table: the machine is data, visible in one dict.
2. A generator: the suspension point is the state; send() drives it.
"""
from __future__ import annotations
from collections.abc import Generator
from enum import Enum, auto
class State(Enum):
LOCKED = auto()
... | SuperElectron/python-design-patterns | patterns/behavioral/state/pythonic.py | .py | b73593b966a1771a | 7.15 | 1 |
"""Generators as protocol scanners: frame suspension holds the state.
A scanner for BEGIN/END blocks -- no state flag anywhere; being inside the
``while`` loop IS the "in a block" state.
"""
from __future__ import annotations
from collections.abc import Iterable, Iterator
def blocks(lines: Iterable[str]) -> Iterat... | SuperElectron/python-design-patterns | patterns/behavioral/state/real_world.py | .py | ad6f9f3c746d96e5 | 7.15 | 1 |
"""Shared fixtures.
Pipelines are built but never set to PLAYING, so nothing here opens a socket
or needs an RTMP server. rtmp2sink only connects on the transition out of
NULL, which makes full pipeline construction safe to assert on in a unit test.
"""
import os
import sys
import pytest
sys.path.insert(0, os.path.... | mishan/videomixer | tests/conftest.py | .py | 1f23ccb9f61434d9 | 7.5 | 0 |
import re
from .service import Service
import logging
logger = logging.getLogger(__name__)
__all__ = []
__all__.append('AlertConsumer')
class AlertConsumer(Service):
'''
A base class for implementing custom alert message consumers.
One is expected to extend this class in one of two ways:
1. More ad... | driplineorg/dripline-python | dripline/core/alert_consumer.py | .py | 30cfb68fbf609d7e | 7.3 | 3 |
__all__ = []
import scarab
from _dripline.core import create_dripline_auth_spec, Core, DriplineConfig, Receiver
from .request_sender import RequestSender
import logging
logger = logging.getLogger(__name__)
__all__.append("Interface")
class Interface(Core, RequestSender):
'''
A class that provides user-frien... | driplineorg/dripline-python | dripline/core/interface.py | .py | b25e8ca817e387b1 | 7.3 | 3 |
__all__ = []
import dripline
import importlib.util
import inspect
import logging
logger = logging.getLogger(__name__)
__all__.append('ObjectCreator')
class ObjectCreator:
'''
Mixin class providing the ability to create a class based on a provided configuration dictionary.
'''
def __init__(self, **... | driplineorg/dripline-python | dripline/core/object_creator.py | .py | 859b754cee54a45f | 7.3 | 3 |
__all__ = []
import scarab
from _dripline.core import op_t, Core, Receiver, MsgRequest, MsgReply, DriplineError
import uuid
import logging
logger = logging.getLogger(__name__)
__all__.append("RequestSender")
class RequestSender():
'''
A mixin class that provides convenient methods for dripline interactions i... | driplineorg/dripline-python | dripline/core/request_sender.py | .py | 2dd41826ef37230e | 7.3 | 3 |
__all__ = []
import scarab
from _dripline.core import _Service, DriplineConfig, create_dripline_auth_spec
from .throw_reply import ThrowReply
from .object_creator import ObjectCreator
from .request_sender import RequestSender
from .request_handler import RequestHandler
import datetime
import logging
logger = logging... | driplineorg/dripline-python | dripline/core/service.py | .py | 9ae73cc36c32373d | 7.3 | 3 |
__all__ = []
import scarab
from _dripline.core import DL_Success, DL_ServiceError, set_reply_cache
from .return_codes import get_return_codes_dict
import logging
logger = logging.getLogger(__name__)
__all__.append('ThrowReply')
class ThrowReply(Exception):
'''
Exception class for use throughout the codebase ... | driplineorg/dripline-python | dripline/core/throw_reply.py | .py | 3ac218f392a5ec4d | 7.3 | 3 |
'''
Contains the base class for adding authentication specifications
Intended usage:
'''
import scarab
import logging
logger = logging.getLogger(__name__)
__all__ = []
__all__.append('BaseAddAuthSpec')
class BaseAddAuthSpec:
'''
This class should contain functions to add the authentication specifications ... | driplineorg/dripline-python | dripline/implementations/base_add_auth_spec.py | .py | e5ad8b9556d6a142 | 7.8 | 3 |
'''
A Entity is an enhanced implementation of a Dripline Endpoint with simple logging capabilities.
The Entitys defined here are more broad-ranging than a single service, obviating the need to define new Entitys for each new service or provider.
When implementing a Entity, please remember:
- All communication must be ... | driplineorg/dripline-python | dripline/implementations/entity_endpoints.py | .py | fbe8d24ccba1cf7c | 7.3 | 3 |
import re
import socket
import threading
from dripline.core import Service, ThrowReply
import logging
logger = logging.getLogger(__name__)
__all__ = []
__all__.append('EthernetSCPIService')
class EthernetSCPIService(Service):
'''
A fairly generic subclass of Service for connecting to ethernet-capable instr... | driplineorg/dripline-python | dripline/implementations/ethernet_scpi_service.py | .py | fcbd45ff6cac9c7c | 7.3 | 3 |
'''
A service for monitoring service heartbeats
'''
from __future__ import absolute_import
# standard libs
import logging
import time
from datetime import datetime, timedelta
from enum import Enum
import threading
# internal imports
from dripline.core import AlertConsumer, Endpoint
import scarab
__all__ = []
logge... | driplineorg/dripline-python | dripline/implementations/heartbeat_monitor.py | .py | 422f054dd87a066f | 7.3 | 3 |
import json
import logging
from typing import Any, Dict, Optional
from aiohttp import web
import scarab
from dripline.core import Interface, Message # Correct import paths based on your project structure
import dripline.core
logger = logging.getLogger(__name__)
# logger.setLevel("DEBUG")
__all__ = ['HTTPServer']
... | driplineorg/dripline-python | dripline/implementations/http_server.py | .py | 1c8ddaa63bc44456 | 7.3 | 3 |
from dripline.core import calibrate
from dripline.core import Entity
from dripline.core import ThrowReply
from dripline.core import get_return_codes_dict
from dripline.core import DL_WarningNoActionTaken
__all__ = []
import logging
logger=logging.getLogger(__name__)
__all__.append("KeyValueStore")
class KeyValueStore... | driplineorg/dripline-python | dripline/implementations/key_value_store.py | .py | dd58f773777cc9b5 | 7.3 | 3 |
'''
A service for interfacing with SQL database for storage. It is currently only developed and tested against Postgres,
but should be relatively straight forward to generalize to support other SQL flavors if there is an interest.
Note: services using this module will require sqlalchemy (and assuming we're still using... | driplineorg/dripline-python | dripline/implementations/postgres_interface.py | .py | 43b68c2014ba3ec6 | 7.3 | 3 |
'''
A Postgres Interface-based logger
'''
from __future__ import absolute_import
# standard libs
import logging
# 3rd party libs
import sqlalchemy
# internal imports
from dripline.core import AlertConsumer
from .postgres_interface import PostgreSQLInterface
__all__ = []
logger = logging.getLogger(__name__)
__all... | driplineorg/dripline-python | dripline/implementations/postgres_sensor_logger.py | .py | 4ca4bbb8c748ead3 | 7.3 | 3 |
#! /usr/bin/env python
import signal
import socket
import re
class SCPICommand:
"""
This class represents a single SCPI get/set command pair.
It can be specified as read-only, in which case the client cannot set a value.
"""
def __init__(self, command, value, read_only=False):
self.comma... | driplineorg/dripline-python | tests/integration/scpi_device/scpi_device.py | .py | d230cef61e6d3418 | 7.8 | 3 |
#!/usr/bin/env python3
"""Decode Geneve (UDP 6081) and print outer nodes, VNI, and inner 5-tuple.
The signal for "is Cilium/OVS encapsulation working and what's inside".
Usage: python3 /app/scripts/cni/geneve_decode.py eth0
python3 /app/scripts/cni/geneve_decode.py eth0 200
python3 /app/scripts/cni/ge... | saidsef/scapy-containerised | scripts/cni/geneve_decode.py | .py | 710707747949619e | 7.39 | 5 |
#!/usr/bin/env python3
"""Decode VXLAN (UDP 4789) and print outer nodes, VNI, and inner 5-tuple.
The signal for "is encapsulation working and what's actually inside it".
Usage: python3 /app/scripts/cni/vxlan_decode.py eth0
python3 /app/scripts/cni/vxlan_decode.py eth0 200
python3 /app/scripts/cni/vxla... | saidsef/scapy-containerised | scripts/cni/vxlan_decode.py | .py | 7843a53a3fa36a70 | 7.39 | 5 |
#!/usr/bin/env python3
"""Top talkers by bytes. Aggregates by endpoint pair regardless of direction
so reply traffic folds into the same row as the request.
Usage: python3 /app/scripts/discovery/talkers.py eth0
python3 /app/scripts/discovery/talkers.py eth0 60
python3 /app/scripts/discovery/talkers.py... | saidsef/scapy-containerised | scripts/discovery/talkers.py | .py | 3c946b0c1e0f900c | 7.39 | 5 |
"""
Django admin config for Todos
"""
from django import forms
from django.contrib import admin
from django.db import models as django_models
from simple_history.admin import SimpleHistoryAdmin
from chalk.todos import models
class LabelAdmin(admin.ModelAdmin):
"""
Admin interface for managing custom labels.
... | wcjordan/chalk | server/chalk/todos/admin.py | .py | 7272fe5c17403e27 | 7.15 | 1 |
"""
Django Rest Framework serializers for todos
"""
from django.core.exceptions import ValidationError
from rest_framework import serializers
from chalk.todos.models import LabelModel, TodoModel
class LabelSerializer(serializers.ModelSerializer):
"""
Serializer for labels
"""
class Meta:
mod... | wcjordan/chalk | server/chalk/todos/serializers.py | .py | 214adeeb36e6742a | 7.15 | 1 |
"""
Views for todo app
"""
from datetime import datetime, timezone
import json
import math
import random
import statistics
from django.contrib.auth import authenticate, login
from django.shortcuts import redirect
from django.core.exceptions import ValidationError
from google.cloud import storage
from rest_framework im... | wcjordan/chalk | server/chalk/todos/views.py | .py | 9eb203f4d06ba4ed | 7.15 | 1 |
#!/usr/bin/env python3
"""
Command-line interface for feature extraction.
This module provides a CLI tool to extract features from rrweb session files
and save them as JSON files for use by the rule engine or other analysis tools.
"""
import argparse
import logging
import os
import sys
from pathlib import Path
from ... | wcjordan/chalk | test_gen/rrweb_ingest/cli.py | .py | 6c584ea1fcc0bba6 | 7.65 | 1 |
"""
Data models for the rrweb_ingest module.
Defines the composite data structure of features we extract when processing an rrweb session
"""
from dataclasses import dataclass, field
from typing import List, Dict, Any
from rrweb_util.user_interaction.models import UserInteraction
FEATURE_EXTRACTION_VERSION = "0.1"
... | wcjordan/chalk | test_gen/rrweb_ingest/models.py | .py | b2901828616a43ae | 7.65 | 1 |
"""
End-to-End Ingest Pipeline for rrweb session data.
This module provides the main entry point for processing rrweb session recordings.
It orchestrates the complete pipeline from raw JSON loading through user interaction extraction.
"""
from collections import defaultdict
import json
import logging
from pathlib imp... | wcjordan/chalk | test_gen/rrweb_ingest/pipeline.py | .py | 8cb72a1ff7d4e40a | 7.65 | 1 |
"""
Unit tests for the noise filtering module.
Tests the is_low_signal function to ensure proper identification
and removal of low-signal events from rrweb sessions.
"""
# pylint: disable=duplicate-code
from rrweb_ingest.filter import is_low_signal
from rrweb_util import EventType, IncrementalSource
class TestIsLo... | wcjordan/chalk | test_gen/rrweb_ingest/tests/test_filter.py | .py | e16e2835955f84ad | 7.65 | 1 |
"""
Unit tests for the JSON loader module.
Tests the load_events function to ensure it properly loads, validates, and sorts
rrweb session data from JSON files.
"""
import json
import tempfile
import pytest
from rrweb_ingest.loader import load_events
@pytest.fixture(name="create_input_file")
def fixture_create_inp... | wcjordan/chalk | test_gen/rrweb_ingest/tests/test_loader.py | .py | 182ecf6017daa23f | 7.65 | 1 |
"""
Integration tests for the end-to-end ingest pipeline.
Tests the ingest_session function to ensure proper integration of all preprocessing
components and correct handling of various session scenarios and error conditions.
"""
import json
from pathlib import Path
import tempfile
import pytest
from rrweb_ingest.mo... | wcjordan/chalk | test_gen/rrweb_ingest/tests/test_pipeline.py | .py | 231204d8e1a91f1d | 7.65 | 1 |
"""
Tests for JSON serialization functionality of rrweb_ingest models.
"""
import json
import pytest
from rrweb_ingest.models import ProcessedSession
@pytest.fixture(name="basic_processed_session")
def fixture_basic_processed_session(basic_user_interaction):
"""Fixture that provides a basic ProcessedSession ins... | wcjordan/chalk | test_gen/rrweb_ingest/tests/test_serialization.py | .py | b2770d6e2cc3953c | 7.65 | 1 |
"""
Shared constants for rrweb event processing across all modules.
"""
# pylint: disable=too-few-public-methods
class EventType:
"""rrweb event type constants."""
# sync w/
# https://github.com/rrweb-io/rrweb/blob/4db9782d1278a2b7235ed48162ccedf0e0952113/packages/types/src/index.ts
DOM_CONTENT_LOAD... | wcjordan/chalk | test_gen/rrweb_util/constants.py | .py | c1a9cf462c5ad76e | 7.65 | 1 |
"""
Virtual DOM State Management for rrweb Session Feature Extraction.
This module handles the initialization and maintenance of a virtual DOM state
from rrweb snapshot and mutation events. It creates the initial DOM tree from
FullSnapshot events and maintains the evolving DOM based on incremental snapshots
through mu... | wcjordan/chalk | test_gen/rrweb_util/dom_state/dom_state_helpers.py | .py | eb5ca9676ee0e013 | 7.65 | 1 |
"""
Data models for representing the DOM state, DOM mutations, & UI nodes
Designed to be built from rrweb data via extractors
"""
from dataclasses import dataclass, field
from typing import Dict, Any, Optional, List
@dataclass
class UINode:
"""
Represents a DOM node with its metadata and hierarchy informatio... | wcjordan/chalk | test_gen/rrweb_util/dom_state/models.py | .py | 2d06065d63f03af9 | 7.65 | 1 |
"""
UI Metadata Resolution for rrweb Session Feature Extraction.
This module provides functions to resolve human-readable context for UI nodes,
including semantic attributes, DOM paths, and accessibility information that
can be used for behavior analysis and test generation.
Configuration:
Uses default_dom_path_f... | wcjordan/chalk | test_gen/rrweb_util/dom_state/node_metadata.py | .py | 7f9d49107596e1ba | 7.65 | 1 |
'''
Created on May 28, 2022
@author: mballance
'''
from astbuilder.cpp_type_name_gen import CppTypeNameGen
class CppGenParams(object):
@classmethod
def gen_ctor_params(cls, c, out):
"""Returns True if this level (or a previous level) added content"""
ret = False
if c.super is not ... | mballance-utils/pyastbuilder | src/astbuilder/cpp_gen_params.py | .py | 830e775fcbb32131 | 7 | 0 |
'''
Created on Sep 13, 2020
@author: ballance
'''
from astbuilder.visitor import Visitor
from astbuilder.ast_ref import AstRef
from toposort import toposort, toposort_flatten
#>>> list(toposort({2: {11},
#... 9: {11, 8, 10},
#... 10: {11, 3},
#... 11: {7, 5},
... | mballance-utils/pyastbuilder | src/astbuilder/linker.py | .py | 9f3efb277c0da569 | 7 | 0 |
'''
Created on Sep 12, 2020
@author: ballance
'''
from _io import StringIO
class OutStream(object):
def __init__(self):
self.ind = ""
self.out = StringIO()
def print(self, s=""):
self.out.write(self.ind + s)
def println(self, s=""):
self.ou... | mballance-utils/pyastbuilder | src/astbuilder/outstream.py | .py | 00017829db8a9371 | 7 | 0 |
'''
Created on Mar 22, 2021
@author: mballance
'''
from astbuilder.outstream import OutStream
class PyExtGenExtDef(object):
"""Generates the extension-definition python file"""
def __init__(self,
name,
package):
self.name = name
self.package = package
... | mballance-utils/pyastbuilder | src/astbuilder/pyext_gen_extdef.py | .py | 3b3546dd60213aad | 7 | 0 |
'''
Created on Mar 23, 2021
@author: mballance
'''
from astbuilder.ast_enum import AstEnum
from astbuilder.ast_flags import AstFlags
from astbuilder.cpp_gen_ns import CppGenNS
from astbuilder.visitor import Visitor
class PyExtGenFactory(Visitor):
def __init__(self,
name,
na... | mballance-utils/pyastbuilder | src/astbuilder/pyext_gen_factory.py | .py | 255aa514fe7ab52e | 7 | 0 |
'''
Created on May 28, 2022
@author: mballance
'''
from astbuilder.pyext_type_name_gen import PyExtTypeNameGen
from astbuilder.pyext_type_name_gen_pyi import PyExtTypeNameGenPyi
from astbuilder.type_userdef import TypeUserDef
from astbuilder.type_pointer import TypePointer
from astbuilder.type_scalar import TypeScalar... | mballance-utils/pyastbuilder | src/astbuilder/pyext_gen_params.py | .py | a0241dfb7861a587 | 7 | 0 |
'''
Created on Mar 23, 2021
@author: mballance
'''
from astbuilder.ast_enum import AstEnum
from astbuilder.ast_flags import AstFlags
from astbuilder.cpp_gen_ns import CppGenNS
from astbuilder.visitor import Visitor
class PyExtGenVisitor(Visitor):
def __init__(self,
name,
na... | mballance-utils/pyastbuilder | src/astbuilder/pyext_gen_visitor.py | .py | 020db0691c818544 | 7 | 0 |
'''
Created on Sep 12, 2020
@author: ballance
'''
from enum import Enum, auto
class TypeKind(Enum):
String = auto()
Bool = auto()
Uint8 = auto()
Int8 = auto()
Uint16 = auto()
Int16 = auto()
Uint32 = auto()
Int32 = auto()
Uint64 = auto()
Int64 = auto()
Floa... | mballance-utils/pyastbuilder | src/astbuilder/type_scalar.py | .py | 2957aa77eaf9d44e | 7 | 0 |
"""List-accessor generation, per element shape.
`PyExtListAccessorGen.gen()` emits the ListUtil property unconditionally --
def path(self) -> ListUtil:
return ListUtil(self.numPath, self.getPath)
-- and *then* dispatches on the element type to generate `numPath`/`getPath`.
So an element shape with no vis... | mballance-utils/pyastbuilder | tests/unit/test_list_accessors.py | .py | 84f9e262e3447b1e | 7.5 | 0 |
'''
Created on Mar 21, 2021
@author: mballance
'''
from unit.base_test import BaseTest
from astbuilder.gen_cpp import GenCPP
from astbuilder.pyext_gen import PyExtGen
import importlib
import os
import subprocess
import sys
import shutil
# Builds the generated .pyx together with the generated C++ AST sources, so the
#... | mballance-utils/pyastbuilder | tests/unit/test_pyext.py | .py | 9718646ed36c00e1 | 7.5 | 0 |
import logging
import os
from typing import Any
from py_toolkit.exceptions import DbError, MissingOptionalDependencyError
logger = logging.getLogger(__name__)
try:
import psycopg2 # type: ignore[import-untyped]
except ModuleNotFoundError: # pragma: no cover
psycopg2 = None # type: ignore[assignment]
def... | rahilsh/py-toolkit | src/py_toolkit/db/db.py | .py | fa2140ad64c41c2d | 7 | 0 |
"""Git config file helpers.
Modernised replacement for the original ``replace_username_in_git_config.py``
one-off script. The original used Python 2 ``print`` statements and hard-coded
paths; these functions are parameterised, typed and logged.
"""
import logging
import os
logger = logging.getLogger(__name__)
def ... | rahilsh/py-toolkit | src/py_toolkit/git/git_config.py | .py | d72114eb6cdbb0b3 | 7 | 0 |
import logging
import os
import shutil
logger = logging.getLogger(__name__)
def make_dir_from_path(path: str) -> None:
"""Create a directory and all parent directories.
Succeeds silently if the directory already exists.
Args:
path: Directory path to create.
Raises:
OSError: If the ... | rahilsh/py-toolkit | src/py_toolkit/utils/folder_util.py | .py | c52daa603c940bee | 7 | 0 |
import json
import logging
from typing import Any
from py_toolkit.exceptions import MissingOptionalDependencyError, XmlError
logger = logging.getLogger(__name__)
try:
import xmltodict # type: ignore[import-untyped]
except ModuleNotFoundError: # pragma: no cover
xmltodict = None # type: ignore[assignment]
... | rahilsh/py-toolkit | src/py_toolkit/utils/xml_to_json.py | .py | ccf2594b5e167766 | 7 | 0 |
# Copyright 2020 Hoplite Industries, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | HopliteInd/nrdpd-daemon | libnrdpd/config.py | .py | bf2ba2e0a3a4b210 | 7 | 0 |
# Copyright 2020 Hoplite Industries, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | HopliteInd/nrdpd-daemon | libnrdpd/main.py | .py | 444e1c7bdafb21ca | 7 | 0 |
# Copyright 2020 Hoplite Industries, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | HopliteInd/nrdpd-daemon | libnrdpd/schedule.py | .py | fcded174032fa7b0 | 7 | 0 |
# Copyright 2020 Hoplite Industries, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | HopliteInd/nrdpd-daemon | libnrdpd/task.py | .py | 26b53a281048b7f3 | 7 | 0 |
# Copyright 2020 Hoplite Industries, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to... | HopliteInd/nrdpd-daemon | libnrdpd/util.py | .py | 148bb71303050cc8 | 7 | 0 |
# -*- coding: utf-8 -*-
"""datatables.py: Django datatableview_advanced_search"""
import functools
import logging
from django.core.exceptions import FieldError
from django.db.models import Q
from . import compiler
__author__ = "Steven Klass"
__date__ = "3/1/18 9:22 AM"
__copyright__ = "Copyright 2018 IC Manage. All ... | icmanage/django-datatable-view-adv-query | datatableview_advanced_search/datatables.py | .py | 72906e62191ca8a5 | 7 | 0 |
# -*- coding: utf-8 -*-
"""jira_lex.py: Django datatableview_advanced_search"""
import sys
import logging
from datetime import date
__author__ = "Steven Klass"
__date__ = "2/28/18 9:20 AM"
__copyright__ = "Copyright 2018 IC Manage. All rights reserved."
__credits__ = [
"Steven Klass",
]
log = logging.getLogger... | icmanage/django-datatable-view-adv-query | datatableview_advanced_search/lexer.py | .py | 1a928b4e3dd35d23 | 7 | 0 |
# -*- coding: utf-8 -*-
"""jira_lex.py: Django datatableview_advanced_search"""
import functools
import logging
import sys
import operator
from .lexer import AdvancedSearchLexer
__author__ = "Steven Klass"
__date__ = "2/28/18 9:20 AM"
__copyright__ = "Copyright 2018 IC Manage. All rights reserved."
__credits__ = [
... | icmanage/django-datatable-view-adv-query | datatableview_advanced_search/parser.py | .py | 65b7d19642d687ee | 7 | 0 |
import numpy as np
def sigmoid(x):
return 1 / (1 + np.exp(-x))
def modified_sigmoid(x, scale=1, shift=0):
return sigmoid(scale * (x - shift))
def pvalue_to_sigmoid(p_values, scale=0.5, shift=5):
p_values = np.atleast_1d(p_values)
log_value = -np.log10(p_values)
result = np.round(modified_sigmo... | ranking-agent/AnswerCoalesce | src/scoring.py | .py | 696d77e59e360493 | 7.24 | 2 |
import logging
import json
import os
import yaml
from collections import namedtuple
import copy
from logging.handlers import RotatingFileHandler
from datetime import datetime
#loggers = {}
class LoggingUtil(object):
""" Logging utility controlling format and setting initial logging level """
@staticmethod
... | ranking-agent/AnswerCoalesce | src/util.py | .py | a22435d8521ac31c | 7.24 | 2 |
#In older versions of AC, we were starting with a file that had already been run, i.e. with the result of a query.
# In MCQ we are just taking the stuff to be enriched as part of the query graph itself.
# We already have a lot of test cases in that original format, and the point of this is to transform
# them into McQ ... | ranking-agent/AnswerCoalesce | tests/InputJson_1.5/transform_to_MCQ.py | .py | ff828ff832a5c446 | 7.74 | 2 |
# This script will upgrade TRAPI messages from 1.4 to 1.5.
import os
import json
def main():
# Get all the TRAPI messages in files called "*_1.4.json" and parse them into "*.json"
filenames = [f for f in os.listdir() if f.endswith("_1.4.json")]
for filename in filenames:
with open(filename,"r") as ... | ranking-agent/AnswerCoalesce | tests/InputJson_1.5/upgrade_json.py | .py | 663667a525baa40a | 7.74 | 2 |
import json
def load_jsons(input_json):
"""Given an MCQ json, get the member_ids of the qnodes"""
with open(input_json,'r') as inf:
data = json.load(inf)
node_ids = set()
for nid,node in data['message']['query_graph']['nodes'].items():
if 'member_ids' in node:
node_ids.upda... | ranking-agent/AnswerCoalesce | tests/create_test_redis.py | .py | fb0b0c34dc65aa7b | 7.74 | 2 |
"""Tests for the cached_infer wrapper in src/server.py.
These tests mock the inner infer() so they don't require the full graph Redis
dataset — only a reachable Redis for the cache itself (which the server already
needs anyway, and the user port-forwards from k8s for local runs).
"""
import asyncio
from unittest.mock ... | ranking-agent/AnswerCoalesce | tests/test_infer_cache.py | .py | 5f37be43c315a714 | 7.74 | 2 |
import asyncio
import src.property_coalescence.property_coalescer as pc
def test_get_properties():
pl = pc.PropertyLookup()
# 'CHEBI:955' should have 4 roles: 'metabolite', 'plant_metabolite', 'biochemical_role', 'eukaryotic_metabolite'
props = pl.lookup_property_by_node('CHEBI:955','biolink:ChemicalEnt... | ranking-agent/AnswerCoalesce | tests/test_property_coalescer.py | .py | ded91f547287058b | 7.74 | 2 |
"""TRAPI 0.9.2 to 1.0.0. to 1.4"""
from collections import defaultdict
import pydantic
from typing import Literal, List
from pydantic import BaseModel
from enum import Enum
# Currently in use
def upgrade_Node(node):
"""Upgrade Node from 0.9.2 to 1.0.0."""
node = {**node}
new = dict()
if "categories" i... | ranking-agent/AnswerCoalesce | tests/upgrade_trapi.py | .py | 65911442dc5f6dfc | 7.74 | 2 |
"""asyncio utility functions for mobu."""
import asyncio
import contextlib
from asyncio import Task
from collections.abc import Awaitable, Callable, Coroutine
from datetime import timedelta
__all__ = [
"schedule_periodic",
"wait_first",
]
def schedule_periodic(
func: Callable[[], Awaitable[None]], inter... | lsst-sqre/mobu | src/mobu/asyncio.py | .py | 4557d8fd03bc5256 | 7.3 | 3 |
"""Config dependency."""
import os
from pathlib import Path
from ..config import Config
from ..constants import CONFIGURATION_PATH
__all__ = [
"ConfigDependency",
"config_dependency",
]
class ConfigDependency:
"""Dependency to manage a cached Mobu configuration.
The controller configuration is rea... | lsst-sqre/mobu | src/mobu/dependencies/config.py | .py | 327e3cd005fd1d71 | 7.3 | 3 |
"""Request context dependency for FastAPI.
This dependency gathers a variety of information into a single object for the
convenience of writing request handlers. It also provides a place to store a
`structlog.BoundLogger` that can gather additional context during processing,
including from dependencies.
"""
from dat... | lsst-sqre/mobu | src/mobu/dependencies/context.py | .py | 3a83a51a6307b1f1 | 7.3 | 3 |
"""Dependencies GitHub CI app functionality."""
from ..models.user import User
from ..services.github_ci.ci_manager import CiManager
from ..storage.gafaelfawr import GafaelfawrStorage
from .config import config_dependency
from .context import ContextDependency
__all__ = ["CiManagerDependency", "MaybeCiManagerDependen... | lsst-sqre/mobu | src/mobu/dependencies/github.py | .py | 9118970c5a2d4160 | 7.3 | 3 |
"""Exceptions for mobu."""
from __future__ import annotations
from pathlib import Path
from typing import override
from fastapi import status
from safir.fastapi import ClientRequestError
from safir.models import ErrorLocation
from safir.slack.blockkit import SlackException, SlackWebException
from safir.slack.sentry ... | lsst-sqre/mobu | src/mobu/exceptions.py | .py | d86f2a40cda82967 | 7.3 | 3 |
"""Component factory and process-wide status for mobu."""
from __future__ import annotations
import structlog
from httpx import AsyncClient
from rubin.gafaelfawr import GafaelfawrClient
from rubin.repertoire import DiscoveryClient
from safir.slack.webhook import SlackWebhookClient
from structlog.stdlib import BoundLo... | lsst-sqre/mobu | src/mobu/factory.py | .py | f46877dadf73a178 | 7.3 | 3 |
"""The main application factory for the mobu service."""
from __future__ import annotations
import json
from collections.abc import AsyncGenerator, Awaitable
from contextlib import asynccontextmanager
from datetime import timedelta
from importlib.metadata import metadata, version
import structlog
from fastapi import... | lsst-sqre/mobu | src/mobu/main.py | .py | e4a5546729599eee | 7.3 | 3 |
"""Base models for monkey business."""
from __future__ import annotations
from datetime import timedelta
from pydantic import BaseModel, ConfigDict, Field
from safir.logging import LogLevel
from safir.pydantic import HumanTimedelta
__all__ = [
"BusinessConfig",
"BusinessData",
"BusinessOptions",
]
cla... | lsst-sqre/mobu | src/mobu/models/business/base.py | .py | c77217f78f8f90fa | 7.3 | 3 |
"""Models for the Muster monkey business."""
from typing import Literal
from pydantic import Field
from .base import BusinessConfig, BusinessOptions
__all__ = [
"MusterConfig",
"MusterOptions",
]
class MusterOptions(BusinessOptions):
"""Options for the Muster monkey business."""
class MusterConfig(B... | lsst-sqre/mobu | src/mobu/models/business/muster.py | .py | 358bd882210c5c85 | 7.3 | 3 |
"""Models for the NotebookRunnerCounting monkey business."""
from __future__ import annotations
from typing import Literal
from pydantic import Field
from .base import BusinessConfig
from .notebookrunner import NotebookRunnerOptions
__all__ = [
"NotebookRunnerCountingConfig",
"NotebookRunnerCountingOptions... | lsst-sqre/mobu | src/mobu/models/business/notebookrunnercounting.py | .py | 143d7ccda9892309 | 7.3 | 3 |
"""Models for the NubladoPythonLoop monkey business."""
from __future__ import annotations
from typing import Literal
from pydantic import Field
from safir.pydantic import HumanTimedelta
from .base import BusinessConfig
from .nublado import NubladoBusinessOptions
__all__ = [
"NubladoPythonLoopConfig",
"Nub... | lsst-sqre/mobu | src/mobu/models/business/nubladopythonloop.py | .py | 15c1d3dbf155dae1 | 7.3 | 3 |
"""Models for the SIAQuerySetRunner monkey business."""
from __future__ import annotations
from typing import Literal, override
from astropy.time import Time
from pydantic import BaseModel, Field
from .base import BusinessConfig, BusinessData, BusinessOptions
__all__ = [
"SIABusinessData",
"SIAQuery",
... | lsst-sqre/mobu | src/mobu/models/business/siaquerysetrunner.py | .py | 966861b77c840caf | 7.3 | 3 |
"""Base models for TAP-related monkey business."""
from __future__ import annotations
from pydantic import Field
from .base import BusinessData, BusinessOptions
__all__ = [
"TAPBusinessData",
"TAPBusinessOptions",
]
class TAPBusinessOptions(BusinessOptions):
"""Options for any business that runs TAP q... | lsst-sqre/mobu | src/mobu/models/business/tap.py | .py | e051f3788e9f6146 | 7.3 | 3 |
"""Models for the TAPQueryRunner monkey business."""
from __future__ import annotations
from typing import Literal
from pydantic import Field
from .base import BusinessConfig
from .tap import TAPBusinessOptions
__all__ = [
"TAPQueryRunnerConfig",
"TAPQueryRunnerOptions",
]
class TAPQueryRunnerOptions(TAP... | lsst-sqre/mobu | src/mobu/models/business/tapqueryrunner.py | .py | 85ce9843c3373892 | 7.3 | 3 |
"""Models for the TAPQuerySetRunner monkey business."""
from __future__ import annotations
from typing import Literal
from pydantic import Field
from .base import BusinessConfig
from .tap import TAPBusinessOptions
__all__ = [
"TAPQuerySetRunnerConfig",
"TAPQuerySetRunnerOptions",
]
class TAPQuerySetRunne... | lsst-sqre/mobu | src/mobu/models/business/tapquerysetrunner.py | .py | 78d54d2eb2e8e137 | 7.3 | 3 |
"""Data models for a monkey."""
from enum import Enum
from pydantic import BaseModel, Field
from .business.base import BusinessData
from .business.notebookrunner import NotebookRunnerData
from .business.nublado import NubladoBusinessData
from .business.siaquerysetrunner import SIABusinessData
from .business.tap impo... | lsst-sqre/mobu | src/mobu/models/monkey.py | .py | e03c1577f3619c02 | 7.3 | 3 |
"""Models related to GitHub repos for the GitHub CI app functionality."""
from __future__ import annotations
from dataclasses import dataclass
from pathlib import Path
from tempfile import TemporaryDirectory
from pydantic import ConfigDict
from .business.notebookrunner import Filterable
__all__ = ["ClonedRepoInfo"... | lsst-sqre/mobu | src/mobu/models/repo.py | .py | 43885dde0b1aa035 | 7.3 | 3 |
"""Models for running a single instance of a business by itself."""
from __future__ import annotations
from pydantic import BaseModel, Field
from .business.business_config_type import BusinessConfigType
from .user import User
__all__ = ["SolitaryConfig", "SolitaryResult"]
class SolitaryConfig(BaseModel):
"""C... | lsst-sqre/mobu | src/mobu/models/solitary.py | .py | 6f17dc1464b85ee5 | 7.3 | 3 |
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