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def _get_object_url_for_region(region, uri): """Internal function used to get the full URL to the passed PAR URI for the specified region. This has the format; https://objectstorage.{region}.oraclecloud.com/{uri} Args: region (str): Region for cloud service uri (str): ...
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def _sx_source_idx_delta(azimuths, radius, dx, dy): """Compute indices of pixels that lie at a distance 'radius' from the target, in the direction of 'azimuths'. """ azimuths_rad = np.deg2rad(azimuths) delta_y_idx = np.rint(radius / dy * np.cos(azimuths_rad)) delta_x_idx = np.rint(radius / dx *...
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def _create_motion_field(input_precip, motion_type): """ Create idealized motion fields to be applied to the reference image. Parameters ---------- input_precip: numpy array (lat, lon) motion_type : str The supported motion fields are: - linear_x: (u=2, v=0) -...
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from typing import Callable from typing import Any import threading def build_walker(concurrency: int) -> Callable[..., Any]: """Return a function for waling a graph. Passed to :class:`runway.cfngin.plan.Plan` for walking the graph. If concurrency is 1 (no parallelism) this will return a simple topologi...
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def selection_stats(units, margin=0.01, name="test", alpha=0.08, s=0.20, proportion=100.0): """Prepare statistics on how many audit units should be selected in order to be able to reduce the risk of confirming an incorrect outcome to a given probability. units = a list of audit units, giving just size o...
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import numpy def calculate_severity_distribution(elt, grid_size=2**14, max_loss_factor=5): """ This function calculates the severity distribution or the distribution of the size of losses, given that an event has occurred ---------- elt : pandas dataframe containing ELT Returns ------- se...
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import csv def MNLI(root, split): """MNLI Dataset For additional details refer to https://cims.nyu.edu/~sbowman/multinli/ Number of lines per split: - train: 392702 - dev_matched: 9815 - dev_mismatched: 9832 Args: root: Directory where the datasets are saved. Default...
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def full_like(other, nodata=None, lazy=False): """Return a full object with the same grid and geospatial attributes as ``other``. Arguments --------- other: DataArray DataArray from which coordinates and attributes are taken nodata: float, int, optional Fill value for new DataArray,...
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import subprocess def run_command_line(command): """Runs command in command line, waits for execution to end Parameters: command (list(string)): list of commands, for parameters each parameter must be in separate list element i.e. ['ls', '-la']. It will NOT work if you simply use ['ls -la'] ...
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def linear_mcca_resps_only(all_data, new_chans, o_dim): """ LINEAR MCCA WITH ONLY THE N SUBJECTS' EEG RESPONSES. THE COMMON STIMULUS IS NOT CONSIDERED FOR THE MCCA STEP. ARGUMENTS: all_data: AN (N+1) ELEMENTS LIST WITH N EEG RESPONSES AND THE ELEMENT AS THE COMMON STIMULI DATA. ...
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def _CanCreateRevertForCulprit(parameters, analysis_id): """Checks if a culprit can be reverted by a specific analysis. The culprit can be reverted by the analysis if: No revert of this culprit is complete or skipped, and no other pipeline is doing the revert on the same culprit. """ culprit = entity_u...
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def read_selection(*args): """read_selection(ea_t ea1, ea_t ea2) -> bool""" return _idaapi.read_selection(*args)
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def losses_and_metrics(num_classes): """ Define loss and metrics Loss: Categorical Crossentropy Metrics: (Train, Validation) Accuracy, Precision, Recall, F1 Returns: loss, train loss, train acc, valid loss, valid acc, precision, recall, auc, f1 """ loss_fn = CategoricalCrossentropy...
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import os def key_dirs(path, keys): """Iterates over a list of keys and returns a list of directories.""" # FIXME: This is CrAzY! if path.endswith('/'): path = path[:-1] dirset = set() for k in keys: kp = os.path.dirname(k) if os.path.dirname(kp) == path: dirset.add(os....
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def get_spans(): """ Get and flush all spans :return: """ global spans with span_lock: r = spans spans = [] return r
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def sign(message, key): """Signs a string 'message' with the private key 'key'""" if 'p' not in key: raise Exception("You must use the private key with sign") return chopstring(message, key['d'], key['p']*key['q'], encrypt_int)
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def GTreeGPMutatorOperation(genome, **args): """ The mutator of GTreeGP, Operation Mutator .. versionadded:: 0.6 The *GTreeGPMutatorOperation* function """ if args["pmut"] <= 0.0: return 0 elements = len(genome) mutations = args["pmut"] * elements ga_engine = args["ga_engine"] gp_...
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def sequence_delta(previous_sequence, next_sequence): """ Check the number of items between two sequence numbers. """ if previous_sequence is None: return 0 delta = next_sequence - (previous_sequence + 1) return delta & 0xFFFFFFFF
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import re def is_email(email: str) -> bool: """ Uses regex to check if a incoming string is an email address""" regex = "^([a-zA-Z0-9]+[\\._-]?[a-zA-Z0-9]+)[@](\\w+[.])+\\w{2,3}$" return re.search(regex, email)
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def matrix_plot_input(result, kde=False, margins=None): """ """ input_sample = result.input_sample if margins: sample = np.zeros(input_sample.shape) for i, marginal in enumerate(margins): for j, ui in enumerate(input_sample[:, i]): sample[j, i] = marginal.com...
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def train_and_predict(k, D_tr, D_te, nontf_X, tfs, genes): """Train classifier and predict gene responses. """ logger.info('Cross validating fold {}'.format(k)) tf_X_tr, y_tr = D_tr tf_X_te, y_te = D_te tfs_tr, tfs_te = tfs X_tr = np.hstack([tf_X_tr, np.vstack([nontf_X for i in range(len(...
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import pandas import types def hpat_pandas_series_ne(self, other, level=None, fill_value=None, axis=0): """ Pandas Series method :meth:`pandas.Series.ne` implementation. .. only:: developer Test: python -m hpat.runtests hpat.tests.test_series.TestSeries.test_series_op8 Parameters --------...
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def _unescape_serialized_class(dct): # type: (Dict[str, Any]) -> Dict[str, Any] """ Unescape serialized '__class__' key. :param dct: Serialized dictionary. :return: Unescaped serialized dictionary. """ if _ESCAPED_SERIALIZED_CLASS_KEY in dct: dct = dct.copy() dct[_SERIALIZED...
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def get_transitions(data_vals, threshold, hysteresis): """ Find the high-to-low and low-to-high state transistions """ pend_len, time_vals, sens_vals = data_vals # Get initial state if sens_vals[0] > threshold: state = 'high' else: state = 'low' # Find state changes ...
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def find_all_indexes(text, pattern): """Return a list of starting indexes of all occurrences of pattern in text, or an empty list if not found.""" assert isinstance(text, str), 'text is not a string: {}'.format(text) assert isinstance(pattern, str), 'pattern is not a string: {}'.format(text) # TODO:...
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def load_from_file(filename, key): """ Loads an object from a .pkl file or a .py file/module. If a .pkl file, returns the object. If a .py file, returns the object named key within that file """ #Check for pickle first if filename[-4:]=='.pkl': with open(filename,'rb') as file: ...
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def get_our_template(ours): """get template in the form of 23 keypoints ours Args: -ours: a list of length 92 [x1,y1,z1,c1,x2,y2,z2,c2,......] Returns: ours_form: 3 by 13 numpy array """ ours_0 = np.asarray(ours).reshape((-1,4)).T[0:3,:] # 3 by 23 ours_head = (ours_0[:,0].copy(...
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def single_number_generalized(nums, k, l): """ Given an array of integers, every element appears k times except for one. Find that single one which appears l times. We need a array x[i] with size k for saving the bits appears i times. For every input number a, generate the new counter by x[j] =...
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import os def create_ifls(path, inp): """Function to create IFLS sheet""" work_book = load_workbook(path) work_sheet = work_book.active input_list = [] faculty_list = [] program_initiative = work_sheet['A1'].value schedule_month = work_sheet['A4'].value for cols in range(0, 31): ...
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def variant(name): """ :doc: screens Returns true if a `name` is a screen variant that can be chosen by Ren'Py. See :ref:`screen-variants` for more details. This function can be used as the condition in a Python if statement to set up the appropriate styles for the selected screen variant. ...
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def quat_to_rot(normalized_quat): """Convert a normalized quaternion to a rotation matrix.""" rot_tensor = jnp.sum( np.reshape(QUAT_TO_ROT, (4, 4, 9)) * normalized_quat[..., :, None, None] * normalized_quat[..., None, :, None], axis=(-3, -2)) rot = jnp.moveaxis(rot_tensor, -1, 0) # Unstac...
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def read_tops(path, skip=-999.25000, delimiter='\t', header=0, colnames=[]): """ Read well tops file into dataframe Parameters: path (string): path to the well tops file skip (): NaN identifier in the selected file delimiter (char): character or list of characters used to separate...
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import os def filename_to_task_id(fname): """Map filename to the task id that created it assuming 1k tasks.""" # This matches the order and size in WikisumBase.out_filepaths fname = os.path.basename(fname) shard_id_increment = { "train": 0, "dev": 800, "mnist": 900, } parts = fname.split...
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from userbot.modules.sql_helper.globals import gvarstatus async def translateme(trans): """For .trt command, translate the given text using Google Translate.""" translator = Translator() textx = await trans.get_reply_message() message = trans.pattern_match.group(1) if message: pass eli...
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def guests(): """ Overview over all non_vip guests. :return: """ class ItemTable(Table): guest_id = Col('Guest ID') items = db_helper.get_paying_sessions() table = ItemTable(items) return render_template('service.html', service_description='If you ar...
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import re import glob import os def setup_dirs(work_dir,verbose=True): """ This sets up the BADASS directory structure for each spectra. It creates the "MCMC_output_#" folders. """ def atoi(text): return int(text) if text.isdigit() else text def natural_keys(text): ''' ...
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import random def distribution_generator(num_samples, distribution_type, mean=0, sd=1, interval=1, n=1, p=0.5): """ Generate random data within a given distribution :param num_samples: Int The number of samples to be returned :param distribution_type: String The type of distribution to be used :param...
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import re def getrevision(binary): """returns the revision string from binary""" revision = "" with open(binary, "rb") as rtgt: stream = rtgt.read() sppattern = re.compile(r"storpool_revision=[a-z0-9\.]+") results = set(sppattern.findall(stream)) if results: assert len(results)...
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def edit(request, id): """ Edit contact information. Address, Email and Phone records are provided as inlineformsets. **Templates:** * ``rolodex/edit.html`` **Template Variables:** * person, person_form, email_formset """ person = get_object_or_404(Person, id=id) EmailFormset...
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def gSquared(properFrame): """ The gradient squared at each pixel of the image, also known as the convolution of a Laplacian kernel across the image. Optimized via `numba`. Edge values are padded with values of 0. Parameters ---------- properFrame : np.ndarray[H,W] An array r...
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def wallet_opened(func): """ :param func: :return: """ @wraps(func) def wapper(self, *args, **kwargs): if not self.Wallet: console_log.error("No opened wallet, please open wallet first") return None else: return func(self, *args, **kwargs) ...
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import copy def subtract_electron_shells(s1, s2, rel_tol=0.0): """ Returns the difference between two lists of electron shells (s1 - s2) This will remove any shells from s1 that are also in s2, within a tolerance """ diff_shells = [] for sh1 in s1: for sh2 in s2: if compa...
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import re def is_enabled_path(path): """ Determine whether or not the path matches one or more paths in the ENABLED_PATHS setting. :param path: A string describing the path to be matched. """ for enabled_path in ENABLED_PATHS: match = re.search(enabled_path, path[1:]) if match...
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import logging def insert_context(session, run_id: str, algorithm: str, parameters: str) -> Contexts: """ method to insert values to the events table :param session: database session :param run_id: run_id :param algorithm: algorithm :param parameters: parameters :re...
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import re def find_matched_pos(str, pattern): """ Find all positions (start,end) of matched characters >>> find_matched_pos('ss12as34cdf', '\d') [(2, 3), (3, 4), (6, 7), (7, 8)] """ match_objs = re.finditer(pattern ,str) match_pos = [match_obj.span() for match_obj in match_objs] return ma...
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def reccyl(rectan1): """reccyl(ConstSpiceDouble [3] rectan1)""" return _cspyce0.reccyl(rectan1)
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def get_message_from_dict(d): """Create a TAXIIMessage object from a dictonary. This function automatically detects which type of Message should be created based on the 'message_type' key in the dictionary. Args: d (dict): The dictionary to build the TAXII message from. Example: ....
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import codecs def diff_files(initial_path, new_path): """ Given two files, open them to variables and pass them to diff_strings for diffing. :type initial_path: object :param initial_path: initial file to diff against :type new_path: object :param new_path: new file to compare to f1 :...
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from typing import Optional from typing import Iterator from typing import List import types def script( description: str = "", category: Optional[str] = None, gesture: Optional[str] = None, gestures: Optional[Iterator[str]] = None, canPropagate: bool = False, bypassInputHelp: bool = False, allowInSleep...
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def get_doc_vec_keyedvectors(kv_obj, doc_counter, dict_df, avg_scheme): """ Calculates a document embedding via weighted averaging Parameters ---------- kv_obj: KeyedVectors-like object doc_counter: Counter() that contains the same information as an entry in VowpalWabbit file dict_df: panda...
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def shift_right(shift_register, bit_count): """Shifts the least significant bits out of the shift register by the given amount. Parameters: shift_register (ShiftRegister): The shift register to operate on. bit_count (int): The number of bits to shift out. Returns: (ShiftRegister, int): New...
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def mark_corners(image, harris_scores, settings, progress_consumer, progress): """ A helper method we use to make the marks of corner as rectangles or bold circles, rather than single pixels. Use a blank image (black), then light up the pixels that have been found by Harris Detector This way we create a...
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from typing import Dict from typing import Optional from typing import List from typing import OrderedDict def build_fairseq_vocab( vocab_file: str, dictionary_class: Dictionary = Dictionary, special_token_replacements: Dict[str, str] = None, unk_token: str = "<unk>", max_vocab: int = -1, min_...
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def score_density(leaderboard): """Create a density esitmate figure for each user It will be useful to keep track of how much each user's score's vary over time. This will give us a density estimate for each user's scores. """ board = leaderboard.drop(['Submission Time', 'counter'], axis=1) ...
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from xml.dom import minidom def getSplunkVersion(sessionKey): """ function to obtain the Splunk software version. This is used to determine parsing of the sessionKey """ base_url = 'https://localhost:8089' request = urllib2.Request(base_url + '/services/server/info',None,headers = { 'Authorization': ('...
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def preprocessing(filepath,files,product,attr): """ 文本预处理 :return: """ #with open(text_path) as f: # content = readtxtline(text_path) # print(content) content = readexcel(filepath)[product][attr] return clean_using_stopword(content,files) return content
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import requests def fetch_fhpg(code): """股票分红配股数据 返回: list 0: 分红配股 1: 配股一览 2: 增发一览 3: 历年融资计划 """ url = f'http://quotes.money.163.com/f10/fhpg_{code}.html#01d05' r = requests.get(url) attrs = {'class': 'table_bg001 border_box limit_sale'} dfs = pd.re...
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from typing import Dict from typing import Any def run_launcher(config: Configuration) -> Dict[str, Any]: """Runs the launcher. Returns the dict with two entries: "artifacts" - contain a mapping `Artifact` => `bool denoting if artifact is deploted` "instances" - contain a mapping `Instance` => `Opti...
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def black_payers_swaption_value_fprime_by_strike( init_swap_rate, option_strike, swap_annuity, option_maturity, vol): """black_payers_swaption_value_fprime_by_strike First derivative of value of payer's swaption with respect to strike under black model. See :py:fu...
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def utc2localdatetime(naive): """ input: naive utc timestamp from dataframe output: timestamp in local tz """ #print("naive=", naive) utc = naive.tz_localize(utctz) #print('utc=', utc) pac = utc.astimezone(pactz) #print('pac=', pac) return pac
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def box_area(box): """ Calculates the area of a bounding box. Source code mainly taken from: https://www.pyimagesearch.com/2016/11/07/intersection-over-union-iou-for-object-detection/ `box`: the bounding box to calculate the area for with the format ((x_min, x_max), (y_min, y_max)) return: the b...
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def dsigmoid(sigmoid_x): """ dSigmoid(x) = Sigmoid(x) * (1-Sigmoid(x)) = Sigmoid(x) - Sigmoid(x)^2 """ return sigmoid_x - sigmoid_x**2
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def clip(agera5_dir, day, bbox, add_gridid=False): """Extracts a portion of agERA5 for the given bounding box and returns a Xarray dataset. :param agera5_dir: the path to AgERA5 :param day: the date for which to clip :param bbox: a BoundingBox object :param add_idgrid: Add a grid ID (True) or not (...
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def shortcut_url(url, name): """ :param url: :param name: :return: """ # remove slash at the end if url.endswith('/'): url = url[:-1] # gitlab gl_prefix = 'https://gitlab.com/' if url.startswith(gl_prefix): return [make_icon('gitlab', css='is-link'), make_text(u...
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import sys def _get_modules(package, attr_name, constants_attr_name): """Get list of TF API modules. Args: package: We only look at modules that contain package in the name. attr_name: Attribute set on TF symbols that contains API names. constants_attr_name: Attribute set on TF modules that contains ...
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import requests import json from datetime import datetime def get_day(game): """Return single day""" payload = PAYLOAD_SAMPLE payload["gameID"] = game.game_id payload["stateType"] = 12 request = requests.post(game.game_host, headers=HEADERS, json=payload) text = json.loads(request.text) ...
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def compose_text_context_menu_click (selectedtext) : """Translate selected text to LOLSPAEK""" return translate_to_lolspeak(selectedtext)
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import typing def find_blobs( key:typing.Tuple[int, int, int], x0s:int, x1s:int, y0s:int, y1s:int, z0s:int, z1s:int) -> \ typing.Tuple[np.ndarray, np.ndarray]: """ Find blobs in a volume :param volume: the volume in question :param x0s: the starting x coordinate in global coor...
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def progress_bar(iteration, total): """ entertain the user with a simple yet exquisitely designed progress bar and % :param iteration: :param total: :return: """ try: perc = round((iteration/total)*100, 2) bar = ('░'*19).replace('░','█',int(round(perc/5,0))) + '░' ret...
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def check_privileges(privilege_names: list, session, user) -> bool: """ Function for checking a user's privileges match requirements. Authorised if no privilege names in argument and user is logged in. Authorised if user has listed privilege or admin. :param: List of names of privileges with acces...
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def make_tensor_seed(seed): """Converts a seed to a `Tensor` seed.""" if _is_stateful_seed(seed): iinfo = np.iinfo(np.int32) return tf.random.uniform([2], minval=iinfo.min, maxval=iinfo.max, dtype=tf.int32, ...
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def par_auteur(name): """ Add 'par' to the author names """ author_phrase = '' if name: author_phrase = " par {},".format(name) return author_phrase
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from typing import Dict from typing import List def remove_items(item_capacities:Dict[str,int], items_to_remove:List[str])->Dict[str,int]: """ Remove the given items from the given dict. >>> stringify(remove_items({"x":3, "y":2, "z":1, "w":0}, ["x","y"])) '{x:2, y:1, z:1}' >>> stringify(remove_it...
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from typing import Dict from typing import Any from typing import List def split_results(result: Result, agg_info:Dict[Any, Any]) -> List[Result]: """Retrieve the results of the initial quantum circuits from the aggregated result Args: result (Result): Result of the aggregated QuantumCircuit ...
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def text_value(value): """Force a value to text, render None as an empty string.""" if value is None: return "" return force_text(value)
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import torch import time def train(fcstnet, train_x, train_y, validation_x=None, validation_y=None, restore_session=False): """ Train the ForecastNet model on a provided dataset. In the following variable descriptions, the input_seq_length is the length of the input sequence (2*seasonal_period in th...
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def get_networks_for_instance(context, instance): """Returns a prepared nw_info list for passing into the view builders We end up with a data structure like:: {'public': {'ips': [{'address': '10.0.0.1', 'version': 4, 'mac_address': 'aa:aa:aa:aa...
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def load_article_from_nif_file(nif_file, corpus_name, limit=1000000): """ Load a dataset in NIF format. """ print(f'NOW LOADING THE NIF FILE {nif_file}') g = Graph() #for nif_file in glob.glob('%s/*.ttl' % nif_dir): g.parse(nif_file, format="n3") print(f'THE FILE {nif_file} IS LOADED. N...
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from typing import List def _draw_equal_dataset( target: np.ndarray, num_samples: int = 1000, allowed_classes: List[int] = None ) -> np.ndarray: """ given the `target` and `num_samples`, return the labeled_index` :param target: target :param num_samples: 4000 :param allowed_classes: None or li...
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def firstof(parser, token): """ Outputs the first variable passed that is not False. Outputs nothing if all the passed variables are False. Sample usage:: {% firstof var1 var2 var3 as myvar %} This is equivalent to:: {% if var1 %} {{ var1 }} {% elif var2 %} ...
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def canPickupPile(top_card, prepared_cards, played_cards, round_index): """Determines if the player can pick up the pile with their suggested play""" top_key = None try: key_opts = getKeyOptions(top_card) except: raise Exception("Cannot pickup the pile on 3s because you cannot play 3s") ...
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def _valid_arg(*args, src=None): """Return some data, possibly extracted from an AxisManager (or dict...), based on the arguments args. This is to help with processing function arguments that override a default behavior which is to look up a thing in axisman. For example:: signal = _valid_arg(s...
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def find_nearest_store(lat_lng, stores, units): """Finds store from list of stores that is closest to a given set of coords. Args: lat_lng (list(float)): Latitude and longitude being compared to. stores (list(dict)): List of stores to search against. units (str): Distance metric used fo...
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import os def load_environment_auth_vars() -> tuple: """Attempts to load authentication information from environment variables if none is given, looks for a username under "FHIR_USER", password under "FHIR_PW" and the token under "FHIR_TOKEN" Returns: Tuple containing username, password and token...
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def aumentar(p, tax): """ -> Aumenta o valor inicial em uma porcentagem definida pelo usuário :param p: valor inicial :param tax: valor da taxa :return: valor inicial somada a taxa """ res = p + (p * tax/100) return res
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def greenfield_5g_sa(region, strategy, costs, global_parameters, core_lut, country_parameters): """ Get the cost structure for a greenfield 5G SA asset. Parameters ---------- region : dict The region being assessed and all associated parameters. strategy : dict The strategy ...
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def predict_landmarks(param, bbox, dense=False): """ Predicts the 68 face landmarks from a 3D face, scaling them by the face bounding box. Parameters: param (ndarray): Contains 3DMM params (12-pose, 40-shape, 10-expression). bbox (array): The face bounding box. dense (bool): Predic...
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import os def get_completed_ids(): """ returns list of stellar IDs that have been fit """ return np.loadtxt(os.path.join(DATADIR, 'completed.list'), dtype=int)
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def EVLASrvrEdt(uv, err, minOK=[0.1,0.1], flagTab=2, target=None, \ doCalib=0, gainUse=0, doBand=0, BPVer=0, flagVer=-1, \ nThreads=1, check=False, debug=False, logfile = ""): """ Survivor editing See documentation for task Obit/UVFlag for details Returns tas...
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import os def calculate_engine_path(ctx): """ Determine the engine root path from SetupAssistantUserPreferences. if it exists :param conf Context """ def _make_engine_node_lst(node): engine_node_lst = [] cur_node = node while cur_node.parent: if ' ' in cur...
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def calculate_directions_single_track( single_traj: pd.DataFrame, dt: int = 1, time_step: float = 10 ): """Calculate distribution of angles for a particular dt. dt in arbitrary units. If an appropriate frame is missing than simply do not calculate any angle. inputs: single track in a Da...
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def markdown(value): """ Run Markdown over a given value. """ return mark_safe(markdown_func(value))
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def post_messages(): """ Post message here.. returns the message passed if authorized! """ # check api_key header current_api_key = request.headers.get('api_key') if current_api_key is None \ or not api_key_exists(current_api_key): return jsonify({'message': 'Una...
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def get_min_freeboard(fjord): """ Get a required minimum median freeboard for filtering out icebergs """ minfree = {"JI": 15, "KB":5} try: return minfree.pop(fjord) except KeyError: print("The current fjord does not have a minimum freeboard median entry - using a default value!...
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def login(request, template_name='registration/login.html', redirect_field_name=REDIRECT_FIELD_NAME, authentication_form=AuthenticationForm, extra_context=None): """ Displays the login form and handles the login action. """ if request.method == "POST": redirect_to = request.GET.get(red...
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def view_assignments(id, course_id): """Single page view of all the assignments in a session.""" con = db.get_db() cur = con.cursor() cur.execute("""SELECT sessions.id, sessions.course_id, courses.course_id, courses.teacherid, courses.name AS class_name FROM sessions JO...
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import re from datetime import datetime def bufr_surface_parser(config, model, stid, forecast_date, bufr_file_name): """ By Luke Madaus. Modified by jweyn and joejoezz. Parse surface data from a bufkit file. """ # Open bufkit file infile = open(bufr_file_name, 'r', newline='') # define v...
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import os def encode(args, files): """ Encode form (name, value) and (name, filename, type) elements into multi-part/form-data. We don't actually need to know what we are uploading here, so just claim it's all text/plain. """ boundary = '----------=_DQM_FILE_BOUNDARY_=-----------' (body, crlf) = (...
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def name_indel_mutation(sbjct_seq, indel, sbjct_rf_indel, qry_rf_indel, codon_no, mut, start_offset): """ This function serves to name the individual mutations dependently on the type of the mutation. """ # Get the subject and query sequences without gaps sbjct_nucs = sbjct_rf_indel.replace("-"...
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import inspect def clone_or_construct(estimator): """ Clone an estimator, or construct a default one from a class or function. Parameters ---------- estimator : sklearn estimator instance, class, or a function returning same. Returns ------- estimator """ try: return clone(estimator) except TypeError: ...
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