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def update_internal_subnets( self, ipv4_list: list = [ "10.0.0.0/8", "172.16.0.0/12", "192.168.0.0/16", "169.254.0.0/16", "224.0.0.0/4", ], ipv6_list: list = [], segment_ipv4_list: list = [], non_default_routes: bool = False, ) -> bool: """Update the l...
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def prune_outside_window(boxlist, window, scope=None): """Prunes bounding boxes that fall outside a given window. This function prunes bounding boxes that even partially fall outside the given window. See also clip_to_window which only prunes bounding boxes that fall completely outside the window, and clips an...
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from typing import Optional def cross_section(adjacency_matrices: npt.NDArray[np.int_], rng: Optional[np.random.Generator] = None): """ Parameters ---------- adjacency_matrices : rng : Returns ------- """ if rng is None: rng = np.random.default_rng() ...
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def get_threshold_otsu(image: npt.ArrayLike, blur_sigma=5): """Perform Otsu's thresholding with Gaussian blur.""" skimage_gaussian = get_image_method(image, "skimage.filters.gaussian") skimage_otsu = get_image_method(image, "skimage.filters.threshold_otsu") image = skimage_gaussian(image, sigma=blur_sig...
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def mask(batch_tokens, total_token_num, vocab_size, CLS=1, SEP=2, MASK=3): """ Add mask for batch_tokens, return out, mask_label, mask_pos; Note: mask_pos responding the batch_tokens after padded; """ max_len = max([len(sent) for sent in batch_tokens]) mask_label = [] mask_pos = [] prob_...
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def get_lr_curves( spark, features_df, cluster_ids, kernel_bandwidth, num_pdf_points, random_seed=None ): """ Compute the likelihood ratio curves for clustered clients. Work-flow followed in this function is as follows: * Access the DataFrame including cluster numbers and features. * Load same s...
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def orred_filter_list(prefix, subfilters): """Produces Q-object for a list of dicts Each dict's (key: value) pairs are ANDed together (rows must satisfy all k:v) List items are ORred together (satisfying any one is enough) """ result = Q() for filter in subfilters: subresult = Q() ...
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import unittest def get_unittests(): """ Return all of the unit tests """ directory_of_tests=get_testdirectory() basic_suite = unittest.TestLoader().discover(directory_of_tests,pattern='basic_tests_*.py') advanced_suite = unittest.TestLoader().discover(directory_of_tests, pattern='advanced_t...
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def become_mapper_(mapper_idx, map_fun, input_files, n_mappers, n_reducers, map_begin, map_end, unit_fun, reduce_factory, load_balancing_scheme, input_files_delimiter, record_terminator, mapper_output_template, mapper_idx_template): """ become mapper ...
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from typing import Dict from typing import List def execute_action(arena: ActiveArena, unit: ActiveUnit, act: Dict) -> List[Dict]: """ Based on the type of `act`, executes the given action. Returns a summary of the action's effects, conforming to the action_output_schema. Mutates the given arena and/o...
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import copy def has_mutation(gm, example_inputs): """Check if the graph module has any form of mutation""" # TODO - moco gives bad accuracy with Aliasing. gm is getting mutated in a bad way. new_gm = copy.deepcopy(gm) ShapeAliasingAndMutationProp(new_gm).run(*example_inputs) for node in new_gm.gr...
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def comment_remove(obj_id, analyst, date): """ Remove an existing comment. :param obj_id: The top-level ObjectId to find the comment to remove. :type obj_id: str :param analyst: The user removing the comment. :type analyst: str :param date: The date of the comment to remove. :type date:...
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def eul2m_vector(in11, in12, in13, k1, k2, k3): """eul2m_vector(ConstSpiceDouble * in11, ConstSpiceDouble * in12, ConstSpiceDouble * in13, SpiceInt k1, SpiceInt k2, SpiceInt k3)""" return _cspyce0.eul2m_vector(in11, in12, in13, k1, k2, k3)
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def helicsCreateMessageFederateFromConfig(config_file: str) -> HelicsMessageFederate: """ Create `helics.HelicsMessageFederate` from a JSON file or JSON string or TOML file. `helics.HelicsMessageFederate` objects can be used in all functions that take a `helics.HelicsFederate` object as an argument. **...
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def chain_template_as_nx_graph(chain: ChainTemplate): """ Convert FEDOT chain template into networkx graph object """ graph = nx.DiGraph() node_labels = {} for operation in chain.operation_templates: unique_id, label = operation.operation_id, operation.operation_type node_labels[unique_i...
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import os def AbsoluteCanonicalPath(*path): """Return the most canonical path Python can provide.""" file_path = os.path.join(*path) return os.path.realpath(os.path.abspath(os.path.expanduser(file_path)))
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def skip_if(expr, msg=""): """Skip the current substep and set _output to empty. Output will be removed if already generated.""" if expr: raise StopInputGroup(msg=msg, keep_output=False) return 0
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import operator def mergeGuideInfo(seq, startDict, pamPat, otMatches, inputPos, effScores, sortBy=None, org=None): """ merges guide information from the sequence, the efficiency scores and the off-targets. creates rows with too many fields. Probably needs refactoring. for each pam in startDict, retri...
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def get_distribution_centers_shipments(dc_id): """ Retrieve all shipments originating from the specified distribution center. :param dc_id: The distribution center's id :return: [{ "id": "123", "status": "SHIPPED", "createdAt": "2015-11-05T22:00:51.692765", "updatedAt...
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from typing import Union from datetime import datetime def historical_summary(date: Union[None, str, datetime] = None, filter: str = ''): """ https://iextrading.com/developer/docs/#historical-summary Args: date: fixme filter: https://iextrading.com/developer/docs/#filter-results Retu...
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def runIW(before, after, aoi, scl, tScl, ag): """ Run the complete iteratively weighted change analysis Parameters: before (ee.ImageCollection): images representing the reference landscape after (ee.ImageCollection): images representing the after condition aoi: (ee.Geometry): ar...
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def normalize_text(text, norm_type="stemming", pos=False, pipeline=None): """ Preprocess text data :param str text: :param str norm_type: "stemming" or "lemmatization" of None :param bool pos: Only for lemmatization. If True add tags to tokens like "_NOUN" :param Pipeline pipeline: for lemm...
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def make_field( name: str, dimensions: FieldDimensions, is_temporary: bool = False ) -> Field: """ Create a Field :param name: Name of the field :param dimensions: dimensions of the field (use make_field_dimensions_*) :param is_temporary: Is it a temporary field? """ fie...
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from operator import add def expand_to_point(b1, p1): """ Expand bbox b1 to contain p1: [(x,y),(x,y)] """ for p in p1: b1 = add(b1, (p[0], p[1], p[0], p[1])) return b1
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import collections def get_closing_bracket(string, indice_inicio): """Retorna o indice da '}' correspondente a '{' no indice recebido.""" if string[indice_inicio] != '{': raise ValueError("String invalida") deque = collections.deque() for atual in range(indice_inicio, len(string)): if ...
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def read_matrix(): """Returns a matrix from the input integers, spit by ', '""" n = int(input()) matrix = [] for _ in range(n): row = [] for x in input().split(', '): row.append(int(x)) matrix.append(row) return matrix
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def format_time_trigger_string(timer_instance): """ :param timer_instance: either instance of RepeatTimer or EventClock :return: human-readable and editable string in one of two formats: - 'at Day_of_Week-HH:MM, ..., Day_of_Week-HH:MM' - 'every NNN' """ if isinstance(timer_instance, Repeat...
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import importlib def get_class_from_string(class_string: str): """Get class or function instance from a string, interpreted as Python module. :param class_string: :return: """ class_name = class_string.split(".")[-1] module = class_string.replace(f".{class_name}", "") lib = importlib.impor...
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def safe_power(a, b): # pylint: disable=invalid-name """a limited exponent/to-the-power-of function, for safety reasons""" if abs(a) > MAX_POWER or abs(b) > MAX_POWER: raise NumberTooHigh("Sorry! I don't want to evaluate {0} ** {1}".format(a, b)) return a**b
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def ConcateMatching(vec1, vec2): """ ConcateMatching """ #TODO: assert shape return fluid.layers.concat(input=[vec1, vec2], axis=1)
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import copy import random def defaults( d= cli( cohen = .3 ,data = "data/weather.csv" ,far = .9 ,k = 1 ,m = 2 ,mostrest = 3 ,p = 2 ,seed = 1 ,train = .66 ,tiny = .6 )): """Calling `default` will return a fresh copy of...
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import itertools def _racemization(compound, max_centers=3, carbon_only=True): """Enumerates all possible stereoisomers for unassigned chiral centers. :param compound: A compound :type compound: rdMol object :param max_centers: The maximum number of unspecified stereocenters to enumerate....
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def stop_gradient(variables): """Returns `variables` but with zero gradient with respect to every other variables. """ return KerasSymbol(mx.sym.BlockGrad(variables.symbol))
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def get_repartition_emission_pies(data): """ This function will create a figure with 3 pies describing the repartition per building of the emission for electricity / gas / total """ fig = make_subplots( rows=1, cols=3, specs=[[{"type": "domain"}, {"type": "domain"}, {"type": "do...
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def get_next_video_id(database_session: Session): """Returns what the next vid id will be""" return database_session.query(func.max(models.Video.id)).scalar() + 1
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import os def system_supports_plotting(): """ Check if x server is running Returns ------- system_supports_plotting : bool True when on Linux and running an xserver. Returns None when on a non-linux platform. """ try: if os.environ['ALLOW_PLOTTING'].lower() == 't...
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def parse_args(): """Command-line argument parser for testing.""" # New parser parser = ArgumentParser(description='Noise2Noise adapted to X-ray microtomography') # Parameters parser.add_argument('-d', '--data', help='dataset root path', default='../data') parser.add_argument('--load-ckpt', he...
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def sparse_to_dense(sparse_indices, output_shape, sparse_values, default_value=0): """Converts a sparse representation into a dense tensor. Example:: - sparse_to_dense([[0, 0], [1, 1]], [2, 2], [3, 3], 0) = [[3, 0], [0, 3]] Parameters ---------- sparse_indices : tvm.te.Tensor A 0-D, ...
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def os_supported(): """Check if current OS is supported Returns: bool """ return is_os('Windows')
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def put_path_to_db(req_path: ReqPathPutTransact): """Put learning path to DynamoDB""" try: transact_items = path_input.transact_update_path(path=req_path) # return transact_items res = db.client.transact_write_items( ReturnConsumedCapacity="INDEXES", TransactItems=transact_i...
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import zlib def get_hash(value, max_hash): """Calculate split hash factor""" return zlib.adler32(str(value).encode()) % max_hash + 1
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import shutil def copy_proto_go_source(target, source, env): """Copy go source file generated by protobuf into go standard directory. """ shutil.copy2(str(source[0]), str(target[0])) return None
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def add_credentials(request): """ Create credentials for SolarWinds integration. """ action_url = reverse('add_credentials') if request.method == 'POST': form = SolarWindsConectionForm(request.POST) if form.is_valid(): form.save() msg = "The SolarWinds credent...
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def parsePifKey(pif, key): """Parse a single pif key for single scalar values; return nan if no scalar found. :param pif: PIF to access :type pif: pif :param key: key to access data :type key: string :returns: scalar value or np.nan :rtype: """ if (key in ReadView(pif).keys()): ...
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def check_multimetric_scoring(estimator, scoring): """Check the scoring parameter in cases when multiple metrics are allowed. Parameters ---------- estimator : sklearn estimator instance The estimator for which the scoring will be applied. scoring : list, tuple or dict A single str...
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def dummy_workflow(): """Return dummy Snakemake workflow object""" mock_workflow = MagicMock() return mock_workflow
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from distributed import MultiLock import contextlib def get_multi_lock_or_null_context(multi_lock_context, *args, **kwargs): """Return either a MultiLock or a NULL context Parameters ---------- multi_lock_context: bool If True return MultiLock context else return a NULL context that d...
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import os def load_cme_scenarios(): """ Load in the CME scenarios from their HDF5 file and return them in a dictionary. """ project_dirs = get_project_dirs() datafile_path = os.path.join(project_dirs['out_data'], 'CME_scenarios.hdf5') datafile = h5py.File(datafile_path, 'r') cme_scena...
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def argument_decorator(f): """Decorates a function to create an annotation for adding parameters to qualify another. .. literalinclude:: /../examples/argdeco.py :lines: 5-25 """ return parser.use_mixin( DecoratedArgumentParameter, kwargs={'decorator': f})
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async def get_open_api_endpoint(api_key: APIKey = Depends(get_api_key)): """To check if my authorisation process was succesfull""" return "Certification is accepted"
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def ReadMaleResp2015(): """Reads respondent data from NSFG Cycle 9. returns: DataFrame """ usecols = ['caseid', 'mardat01', 'cmdivw', 'cmbirth', 'cmintvw', 'evrmarry', 'wgt2013_2015', 'marend01', 'rmarital', 'fmarno', 'mar1diss'] df = ReadResp('2013_2015_MaleSetup.dct...
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def keyword_list(request): """ This is a view that will show all the keywords. This view should also show the number of datasets for each keyword. Maybe that is a template problem. """ k = Keyword.objects.all() if "q" in request.GET: q = request.GET["q"] keyword_list = k.fil...
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import dateutil def parse_date(datestr): """ Parses an ISO 8601 formatted date from Gophish """ return dateutil.parser.parse(datestr)
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def block_resnet152(pretrained=False, progress=True, device='cpu', **kwargs): """Constructs a ResNet-152 model. Args: pretrained (bool): If True, returns a model pre-trained on ImageNet progress (bool): If True, displays a progress bar of the download to stderr """ return _block_resnet(...
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def encode_categorical_features(dataframe, categorical_features): """Encode categorical features and add to the column of the dataframe.""" transformations = [] # Ordinal encoding ordinal_encoded_output_cols = ["ordinal_indexed_"+categorical_feature for categorical_feature in categorical_features] indexer = Stri...
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def gen_nondeferred_mock(return_value=_sentinel, func_dict=None, spec=None, name='NDMock', side_effect=_sentinel): """ Get a mock which cannot be mistaken for a Deferred @param return_value : A return value, passed directly to the Mock constructor if set @param func_dict: A dic...
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import os def npm_localfile(package, version): """Get the local filename of a npm package""" return os.path.join("npm2", npm_filename(package, version))
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import re def url2domain(url): """ extract domain from url """ parsed_uri = urlparse.urlparse(url) domain = '{uri.netloc}'.format(uri=parsed_uri) domain = re.sub("^.+@", "", domain) domain = re.sub(":.+$", "", domain) return domain
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def rhythm_track(file_path: PathType) -> dict: """Perform rhythm track analysis of given audio file. Args: file_path: Path to audio file. Returns: Rhythm track parameters and data. """ snd = load_audio(file_path) onsets = FluxOnsetDetector(snd.data, snd.fps) segs = segment...
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import os def get_package_dbpath(): """Return the default database path""" return os.path.join(os.path.abspath(os.path.dirname(__file__)), DBNAME)
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def repo(request, repo_id): """Show repo page and handle POST request to decrypt repo. """ repo = get_repo(repo_id) if not repo: raise Http404 if request.method == 'GET': return render_repo(request, repo) elif request.method == 'POST': form = RepoPassowrdForm(reques...
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def plot_predicted_treatment_effect(cf, figsize, npoints, num_workers): """Plot the predicted treatment effect from a Causal Forest. Args: cf (CausalForest): Fitted Causal Forest. figsize (tuple): The figure size. npoints (int): Number of points for meshgrid. num_workers (int): ...
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import sys def create_progress_bar(total, desc, **kwargs): """Helper creating a progress bar instance for a given parameters set. The bar should be closed by calling close() method. """ return ProgressBar( total=total, desc=desc, # XXX: click.get_text_stream or click.get_binar...
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def central_angle_names(zma): """ distance coordinate names """ return vmat.central_angle_names(vmatrix(zma))
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def cylinder_circles(nodeA, nodeB, radius, element_number=10): """ Return list of two circles with defined parameters. """ vector = (np.array(nodeA) - np.array(nodeB)).tolist() ptsA = circle(nodeA, vector, radius, element_number) ptsB = circle(nodeB, vector, radius, element_number) return ...
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def get_at_index(obj, index): """Возвращает объект списка с определенным индексом. Индексация списка 1...n """ try: return obj[index - 1] except IndexError: return None
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def mass_distance_matrix(ts, query, w): """ Computes a distance matrix using mass that is used in mpdist_vector algorithm. Parameters ---------- ts : array_like The time series to compute the matrix for. query : array_like The time series to compare against. w : int ...
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def create_tube(inner_radius=0.5, outer_radius=1.0, height=1.0, slices=64, stacks=64): """generates the vertices, normals, and indices for a tube mesh :param inner_radius: tube inner radius :type inner_radius: float :param outer_radius: tube outer radius :type outer_radius: float :param height:...
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import requests import json def get_room_id(room_name): """ This function will find the Spark room id based on the {room_name} Call to Spark - /rooms :param room_name: The Spark room name :return: the Spark room Id """ payload = {'title': room_name} room_number = None url = SPARK_...
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def openstack_ceilometer(today, **kwargs): """ Pricing plugin for openstack ceilometer. """ clear_ceilometer_stats(today) new = total = 0 for site in settings.OPENSTACK_CEILOMETER: logger.info( "Processing OpenStack ceilometer {}".format(site['WAREHOUSE']) ) t...
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def spkezp_vector(k1, in11, str1, str2, k2): """spkezp_vector(SpiceInt k1, ConstSpiceDouble * in11, ConstSpiceChar * str1, ConstSpiceChar * str2, SpiceInt k2)""" return _cspyce0.spkezp_vector(k1, in11, str1, str2, k2)
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import math def rowSpacing(beta, sazm, lat, lng, tz, hour, minute): """ This method determines the horizontal distance D between rows of PV panels (in PV module/panel slope lengths) for no shading on December 21 (north hemisphere) June 21 (south hemisphere) for a module tilt angle beta and surface...
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def _check_buildopts_arches(mmd, arches): """ Returns buildopts arches if valid, or otherwise the arches provided. :param mmd: Module MetaData :param arches: list of architectures :return: list of architectures """ buildopts = mmd.get_buildopts() if not buildopts: return arches ...
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def hopwise_qry_encoder(qry_seq_emb, qry_input_ids, qry_input_mask, is_training, bert_config, qa_config, suffix="", project=True, project_dim=No...
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def construct_acyclic_matching_along_gradients(morse_complex, delta=np.inf): """ Finds an acyclic matching in filtration order along gradients Inspired by [MN13] p. 344 MorseReduce :param morse_complex: A morse complex :param delta: Only construct matches...
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def r2tth(x,dist): """Convert a numpy array of azimuthal radii to 2 theta""" return np.arctan(x/dist)*180/np.pi
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def is_notebook(): """ code from https://stackoverflow.com/questions/15411967/how-can-i-check-if-code-is-executed-in-the-ipython-notebook """ try: shell = get_ipython().__class__.__name__ if shell == 'ZMQInteractiveShell': return True # Jupyter notebook or qtconsole ...
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def crypto_lettre(dico: dict, lettre: str) -> str: """ Fonction qui renvoie une lettre cryptée d'après le dictionnaire associé :param ASCIIrandom: :param lettre: lettre MAJUSCULE :return: la lettre cryptée en MAJUSCULE """ return dico[lettre]
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def read_tusc(path): """Helper function to read in the Tuscany shapefile""" path_shapefiles, regions, provinces, territories, municipalities, crs = read_files.read_shapefile_data(path, 'shape_files_path.json') df_reg_tus = read_files.read_shapefiles_in(True, path_shapefiles, regions, crs) return df...
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def train_nn(sess, epochs, batch_size, get_batches_fn, train_op, cross_entropy_loss, input_image, correct_label, keep_prob, learning_rate): """ Train neural network and print out the loss during training. :param sess: TF Session :param epochs: Number of epochs :param batch_size: Batch s...
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import warnings def preprocess_config(config, path, all_cols=True, model_cols=None, modify_config=None): """Preprocess the config Args: * config: original config * path: path to load column names Returns: * config: preprocess config. If design_all_cols is true, then read col_na...
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def monoscale(array, color=MONOSCALE_SHADOWLEVEL, as_type=None, slice_size=SLICE_SIZE): """ Converts a grayscale array into a monoscale array. This deletes shadow level 1 and sets the other shadow values to a uniform value. The Poisson spot markings remain unchanged. Note: After conversion, the opt...
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def _mergeChannels(st): """ function to find longest continuous data chunck and discard the rest """ st1 = st.copy() st1.merge(fill_value=0.0) start = max([x.stats.starttime for x in st1]) end = min([x.stats.endtime for x in st1]) try: st1.trim(starttime=start, endtime=end) e...
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from typing import List import re def create_pattern(templates: List[str], input_str: str, pretty: bool = False): """ create all patterns based on list of input templates using the input string. Args: templates: list of templates/stencils input_str: string to apply templates on to create...
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import numpy def dehaze( image: xpArray, size: int = 21, downscale: int = 4, minimal_zero_level: float = 0, correct_max_level: bool = True, in_place: bool = True, internal_dtype=None, ): """ Dehazes an image by means of a non-linear low-pass rejection filter. Parameters --...
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from datetime import datetime import requests def token_price_chart_arken(token, symbol): """Lookup for prices via Arken API and return price chart image""" timeframe = get_timeframe(INTERVAL) * 50 # Number of candlesticks end_time = datetime.now() # Convert datetime to Unix time start_time = in...
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def code_info(x, version, is_pypy=False): """Formatted details of methods, functions, or code.""" return format_code_info(get_code_object(x), version, is_pypy=is_pypy)
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def substrings(a, b, n): """Return substrings of length n in both a and b""" substrings = [] a_substrings = get_substrings(a, n) b_substrings = get_substrings(b, n) # For every substring in list of substrings a: for a_substring in a_substrings: # For every substring in list of substrings...
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import sys def all_ids(conn, protein=False, verbose=False): """ Get all the available IDs in the database :param conn: the database connection :param protein: Whether the object refers to protein (True) or DNA (False). Default=DNA :param verbose: More output :param verbose: More output :re...
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import torch def mc_control_epsilon_greedy(env, gamma, n_episode, epsilon): """ Obtain the optimal policy with on-policy MC control with epsilon_greedy @param env: OpenAI Gym environment @param gamma: discount factor @param n_episode: number of episodes @param epsilon: the trade-off between ex...
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import logging import os def v_slide(params): """ """ paths = Paths() try: try: scn_file = OpenSlide(paths.slice_80) except OpenSlideUnsupportedFormatError: logging.error("OpenSlideUnsupportedFormatError!") return except OpenSlideError: ...
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def svn_wc_maybe_set_repos_root(*args): """ svn_wc_maybe_set_repos_root(svn_wc_adm_access_t adm_access, char path, char repos, apr_pool_t pool) -> svn_error_t """ return _wc.svn_wc_maybe_set_repos_root(*args)
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def graph_semantics(g): """Convert a networkx.DiGraph to compounds and reactions for grid_land.""" compounds = {} reactions = {} for node, attributes in g.nodes.items(): if attributes.get("reaction"): reactants = [e[0] for e in g.in_edges(node)] products = [e[1] for e in ...
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def fetching_latest_quiz_statistics(request_ctx, course_id, quiz_id, all_versions, **request_kwargs): """ This endpoint provides statistics for all quiz versions, or for a specific quiz version, in which case the output is guaranteed to represent the _latest_ and most current version of the quiz. ...
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import os def make_api_key(size=32): """Generate a random API key, should be as random as possible (not predictable) :param size: the size in byte to generate note that it will be encoded in base58 manner, the length will be longer than the aksed size """ # TODO: os.urandom collec...
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def relocate_estimates_data(ws): """ """ ### Country group ws = relocate(ws, 'B', 7, 11, 'B', 34) ws = relocate(ws, 'D', 7, 11, 'C', 34) ws = format_numbers(ws, ['C'], (34,40), 'Comma [0]', 3) ws = relocate(ws, 'B', 7, 11, 'E', 34) ws = relocate(ws, 'E', 7, 11, 'F', 34) ws = format...
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def replace_channel_in_key(meta,new_band_id): """ Replace the band id in the CX header key. Parameters ---------- meta : str CX line header. new_band_id : int id for the new (zoom) band. Returns ------- new_meta : str new CX line header. ...
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def check_cells_fit(cell_no, min_cell_distance, space_range=[[0,10],[0,10],None]): """ given the number of cells (cell_no), and the minimal distance between the cells and the space_ranges (x,y,z) it returns True if the cells can fit within this range and False if not. If any of the dimensions does not...
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import argparse import os def parse_args() -> argparse.Namespace: """Parse CLI arguments. :return: Namespace object holding parsed arguments as attributes. This object may be directly used by garminexport/garminbackup.py. """ parser = argparse.ArgumentParser( prog="garminbackup", ...
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import io def _read_sub_atoms(atom: tuple) -> list: """ A special method for parsing a stream that isn't from the original file. :param atom: a tuple containing atom data :return: a set of sub atoms """ byte_stream = io.BytesIO(atom[2]) atoms = _read_atoms(byte_stream, atom[0] - 8) ...
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