content
stringlengths
35
762k
sha1
stringlengths
40
40
id
int64
0
3.66M
def load_image(folder, test): """Load the data for a single letter label.""" image_files = glob.glob(folder + "*[0-9].tif") dataset = np.ndarray(shape=(len(image_files), FLAGS.image_size, FLAGS.image_size), dtype=np.float32) mask_train = [] print(folder) num_images = 0 for image_f...
83b824d7127cd2e0751578aadbde8ab4936ff909
3,628,700
def get_log_p_k_given_omega_int_analytic(k_train, k_bnn, interim_pdf_func): """Evaluate the log likelihood, log p(k|Omega_int), using kernel density estimation (KDE) on training kappa, on the BNN kappa samples of test sightlines Parameters ---------- k_train : np.array of shape `[n_train]` ...
83b4c43d86eddc6fd0a4f51deaec570889054d3f
3,628,701
import theano.tensor as T def LeakyReLU(a=0.33): """ Leaky rectified linear unit with different scale :param a: scale :return: max(x, a*x) """ def inner(x): return T.switch(x < a*x, a*x, x) return inner
5b9227f9e013fff14fbd49be77230dd1e9069525
3,628,702
def get_top_element_count(mol, top): """ Returns the element count for the molecule considering only the atom indices in ``top``. Args: mol (Molecule): The molecule to consider. top (list): The atom indices to consider. Returns: dict: The element count, keys are tuples of (elem...
f7293c1d154346c955052ceff0ee59483538bdc3
3,628,703
def load_data(filename, start=0.0, end=1.0, include_profiles=False): """ Wrapper function to load data from a file. Args: filename: The path of the file to load the data from. start: Fractional position from which to start reading the data. end: Fractional position up to which to re...
e234e037260ef31292f939cd39f20bc394197d31
3,628,704
def query_spf(domain: str) -> str: """ takes in a domain as a string and trys to find a spf with a query, if it finds one it returns the spf record if not returns an empty string. """ q = query(domain,'TXT') if not q: return "" for txtd in q.rrset: if txtd.strings[0].decode('utf-...
0c3bd664930445372cff2c9ffcd88ae1224ef6f8
3,628,705
def str_wire(obj): """Returns a string listing the edges of a wire.""" s = [] edges = obj.Edges() edge_count = len(edges) if edge_count == 1: s.append("Wire (1x Edge)\n") else: s.append("Wire (%dx Edges) " % (edge_count)) s.append("length:") s.append(_str_value(wi...
8434b804178e0e480b1804a2186f360c93c9fd4a
3,628,706
from environmental import EFM from performance import calculate_performance import os def run_model(model_input, resmap, ID, full_output=False): """ run model Parameters ---------- 'model_inputs' (dictionary): contains inputdata, interference flag, logit flag, candidate model pa...
9e05369bddd4d5290eae3362caf8b28cd385b176
3,628,707
from typing import Tuple def calculate_approximate_ci( xs: np.ndarray, ratios: np.ndarray, confidence_ratio: float ) -> Tuple[float, float]: """ Calculate approximate confidence interval based on profile. Interval bounds are linerly interpolated. Parameters ---------- xs: The ...
d48133a5017e3e121c918ef1efc44d1bef2c21cd
3,628,708
import logging def get_logger(level=logging.INFO, quite=False, debug=False, to_file=''): """ This function initialises a logger to stdout. :param level: logging level (DEBUG / INFO / WARNING / CRITICAL) :param quite: if mute logging :param debug: if debug mode :param to_file: log file path ...
13e60d08055639fcad9389b1ee49b2c7113f38c3
3,628,709
import torch def transform_means(means, size, method='sigmoid'): """ Transforms raw parameters for the index tuples (with values in (-inf, inf)) into parameters within the bound of the dimensions of the tensor. In the case of a templated sparse layer, these parameters and the corresponding size tuple...
86bd46f2a10f01dc3a39e5b3e7c3003bb95641bb
3,628,710
def pull_if_not_exist(region: str=None, registry_prefix: str=None, repo: str=None, tag: str=None): """ Pull the image from the registry if it doesn't exist locally :param region: :param registry_prefix: :param repo: :param tag: :return: """ output = get_stdout('''{docker} images {re...
4826a31f41db9cac92b70f1b568dd5351ff2d0bd
3,628,711
import re def _remove_junk(plaintext, language): """ """ if language in {"zh", "ja", "fa", "iw", "ar"}: return plaintext lines = plaintext.splitlines() lines = [l for l in lines if re.findall(MEANINGFUL, l) or not l.strip() or l.startswith("<meta")] out = "\n".join(lines).strip() + "\n...
0d88d55021aa4b81eeb39f1ca21540b3112c6a08
3,628,712
def model_parallel_is_initialized(): """Check if model and data parallel groups are initialized.""" if _TENSOR_MODEL_PARALLEL_GROUP is None or _PIPELINE_MODEL_PARALLEL_GROUP is None or _DATA_PARALLEL_GROUP is None: return False return True
f60560130cbde971e340987064f58e66cd1b6855
3,628,713
def CV_IS_IMAGE(*args): """CV_IS_IMAGE(CvArr img) -> int""" return _cv.CV_IS_IMAGE(*args)
ca00c5f9614a59e037fbe1bd06d97f38f6c27b57
3,628,714
def fingerprint(samp): """A memory-efficient algorithm for computing fingerprint when wid is large, e.g., wid = 100 """ wid = samp.shape[1] d = np.r_[ np.full((1, wid), True, dtype=bool), np.diff(np.sort(samp, axis=0), 1, 0) != 0, np.full((1, wid), True, dtype=bool) ] ...
3b372b4480da2fc5fdfd89755b0dc7ec1408fbf3
3,628,715
def ldns_rr_list_compare(*args): """LDNS buffer.""" return _ldns.ldns_rr_list_compare(*args)
7a4414931578ec475bae6b1cf112e6eb8b8d564f
3,628,716
def at_least_one_shift_each(cur_individual): """ checks if there is at least one of each shift: 01, 10, 11 """ num_entrega = 0 num_recogida = 0 num_dual = 0 while cur_individual: shift = cur_individual[:2] cur_individual = cur_individual[2:] if shift == '01': num_...
070fe16e779ab30bcee7873ec01876962f30ec91
3,628,717
def generate_validate_yaml_for_python( artifact_name, top_level_imports, allowed=None, exclude_files=None, verbose=0, ): """Generate a validation YAML file from an artifact that is a python package. This function works in two stages. 1. It uses a default set of globs for python install...
074df24576fecabdd4d7d53faeacb09791556441
3,628,718
def near_points(px, qx, r, pxtree=None, qxtree=None): """ Finds points in qx that are within a distance r of any point in px Parameters: px, required, float(np, dim), coordinates of px qx, required, float(nq, dim), coordinates of py r, required, float, radius of closeness ...
d9ee596d0b3dc02247f8df31ea521a978b79a1f2
3,628,719
def batch_dtype(observation_space, action_space): """Returns a batch dtype for the provided observation and action spaces. Args: observation_space -- the observation space action_space -- the action space Returns a complex numpy dtype for the batch """ states_dtype = np.dtype((obse...
1525d9a2817a97b748ffd06c20b88b2e7d25a538
3,628,720
def runQuery(tStart, tStop): """ Get all the rows from all the events within the time period of _tStart_ and _tStop_. :param tStart: start of the time period :param tStop: stop of the time period :return: an array of all the events between _tStart_ and _tStop_ """ mariadb_connection = mariad...
b3dd62cc41a8a5da331190303b4008a135c07dbb
3,628,721
from datetime import datetime import pytz def get_aware_utc_now(): """Create a timezone aware UTC datetime object from the system time. :returns: an aware UTC datetime object :rtype: datetime """ utcnow = datetime.utcnow() utcnow = pytz.UTC.localize(utcnow) return utcnow
b0b102b8d7d49e0d7d4041a476502cdd683dc8af
3,628,722
from typing import Optional from typing import Callable from typing import Iterator from typing import Any import inspect def iterpoints(resp: dict, parser: Optional[Callable] = None) -> Iterator[Any]: """Iterates a response JSON yielding data point by point. Can be used with both regular and chunked respons...
000c2c873ab38378bb42945ed3304213b254061a
3,628,723
def evaluation(board: chess.Board, deciding_agent): """ Basic heuristic. :param board: The current state of the game The current state of the game :param deciding_agent: The identity of the "good" agent. :return: Heuristic value for the state """ # Define 1 for myself and -1 for rival: ...
95bbc6c7b3dfd20b7c88b172f5b42adbada64247
3,628,724
import time def calculate_temperature(T0, setpoint, K, omega, Tvar): """ Calculate temperature according to the following formula: :math:`T_{output} = T_{var} exp^{-(t - t_0)/K} sin(ω t) + T_{setpoint}` """ t = time.monotonic() return ((Tvar * np.exp(-(t - T0) / K) * ...
3c56efe329e7f393b0bf1d6829fdcd0b0b32a557
3,628,725
def nodes_visited_for_seq_ref(distance, max_array, min_array, list_parent_node): """ """ boolean_grp = np_logical_and(np_less_equal(distance, max_array), np_greater(distance, min_array)) count_visited_nodes = np_sum(boolean_grp) not_boolean_grp = np_logical_not(boo...
a85b86a28993d25f9c3b0a3b1f6ff0d8db5edab6
3,628,726
from typing import Type import subprocess from typing import Any import importlib def get_config_class() -> Type[BaseSettings]: """ Dynamically imports and returns the Config class from the current service. This makes the script service repo agnostic. """ # get the name of the microservice package...
5e64bc3735593b576dd516adfb49564429f18ee4
3,628,727
def bdc_plot_datasets(datasets, zoom = 4, layout=Layout(width='600px', height='600px')): """Plot Dataset tiles """ bbox = get_bounds(datasets, datasets[0].crs) bbox_pol = shapely.wkt.loads(bbox.wkt) project = partial( pyproj.transform, pyproj.Proj(datasets[0].crs.crs_str), ...
6c05b84571dbef30116debb3605f14e56acb176c
3,628,728
from typing import Tuple from typing import List import csv def read_xnli(dir_path, lang, split, spm_path=None) -> Tuple[List[List[str]], List[str]]: """ Reads XNLI data. :param dir_path: the path to the xnli folder :param lang: the language :param split: the split of the data that should be read ...
bdfe3a1d938fb39573e604e97ce8bd27512b3f34
3,628,729
def indexation(obj, key): """:yaql:operator indexer Returns value of attribute/property key of the object. :signature: obj[key] :arg obj: yaqlized object :argType obj: yaqlized object, initialized with yaqlize_indexer equal to True :arg key: index name :argType key: keyword :re...
3848641447a50e0059c7ce4d68318ff832d2f5f1
3,628,730
def convert_output_key(name): """ Convert output name into IE-like name :param name: output name to convert :return: IE-like output name """ if not isinstance(name, tuple): return name if len(name) != 2: raise Exception('stats name should be a string name or 2 elements tuple ' ...
d5c59766c615e0e7b45f173948692050a7b890e3
3,628,731
def collection(identifier: str): """Get a collection. --- tags: - collection parameters: - name: prefix in: path description: The identifier of the collection required: true type: string example: 0000001 - name: format description: The file type in:...
1f37d74617d6e92fa4f955214b1f613856a8dadf
3,628,732
def tensor_shape_proto(output_size): """ The shape of this tensor. """ return TensorShapeProto(dim=[TensorShapeProto.Dim(size=d) for d in output_size])
f5b89370c62259349c27c0da1558b2abb5160173
3,628,733
def check_raises(physical_line, filename): """Check raises usage N354 """ ignored_files = ["./tests/unit/test_hacking.py", "./tests/hacking/checks.py"] if filename not in ignored_files: if re_raises.search(physical_line): return (0, "N354 ':Please use ':rai...
9c735f485fdf73d0914abd105ddb6ff39140fda2
3,628,734
def eval_expr(src, env=None, **kwargs): """ Similar to eval_ast, but receives expression as a string and variables as keyword arguments. """ env = {} if env is None else env env.update(kwargs) return eval_ast(parser(src), env)
752e7198476f528916e2252a0d78b0586f7a88b8
3,628,735
def tasksInView(): # pragma: no cover """Iterate over all the tasks in view.""" return filter(isTask, itemsInView())
b46b9c75590bc36aac015470e1d04183752a7855
3,628,736
def in_polygon(point, polygon): """Simple wrapper on the within method of shapely points Params: point (POINT) a shapely point object polygon (POLYGON) a shapely polygon object (the target overlap area) Returns: (bool) whether or not the point is within polygon expressed as a boolean "...
0a26d023672162a53affddfe23a89361d900d9a0
3,628,737
def sort_points(points:list) -> list: """ Returns a list of point tuples equivalent to points, but sorted in order by ascending x coordinate. >>> sort_points([(5,4),(2,3)]) [(2,3),(5,4)] >>> sort_points([(1,1),(3,2),(2,3)]) [(1,1),(2,3),(3,2)] >>> sort_points([(99,120),(0,10),(200,...
007b20889ad7b474b891196da1ee9ed6e3286812
3,628,738
from sys import path def validate_overwrite_different_input_output(opts): """ Make sure that if overwrite is set to False, the input and output folders are not set to the same location. :param opts: a namespace containing the attributes 'overwrite', 'input', and 'output' :raises Validatio...
06427ee7782533979740f465f79a03aa3054bc1f
3,628,739
def NASNetMobile(input_shape=None, include_top=True, weights='imagenet', input_tensor=None, pooling=None, classes=1000): """Instantiates a Mobile NASNet model in ImageNet mode. Optionally loads weights pre-trained on ImageNet. N...
5cbfb237566dab72376fb14b167e48e2cb69b219
3,628,740
def dcn_resnet152(pretrained=False, **kwargs): """Constructs a ResNet-152 model. Args: pretrained (bool): If True, returns a model pre-trained on ImageNet """ model = ResNet(Bottleneck, [3, 8, 36, 3], **kwargs) if pretrained: pretrained_model = model_zoo.load_url(model_urls['resnet1...
edf6ab41af211cc37f04bf6614497be9e7a77293
3,628,741
import string def preprocessing(text): """Exclude punctuations and digits from text.""" text = process_tweets(text) text = text.lower() exclude = string.punctuation + string.digits for i in exclude: text = text.replace(i, "") return text
f390ce2b0c1a1ff831b5a7c7b2491b9c860ad4e4
3,628,742
import typing def parse_patter(pats: typing.List[str]) -> typing.Tuple[typing.List[str], typing.List[str]]: """ 分析匹配项 ======== /xx/ # 只匹配根目录下文件夹 xx/ # 匹配所有的文件夹 /xx # 只匹配根目录下文件 xx # 匹配所有的文件 !xx # 除xx之外 ========= /xx/ => xx + xx/** xx/ => xx + xx/...
17eca544b157fe2ad406e1c4385c49acc53ff0d7
3,628,743
def index(): """Job Status Index.""" return render_template('fts_index.html')
bd382655aea46c910ef66c6563a094186d5b2a51
3,628,744
def createNiftiTestFiles(shouldValidate: bool = True): """ Create base 3D NIfTI1 file all others are created from """ convertDicomFileToNifti(test_dicomPath, test_3DNifti1Path) nifti1_3D = nib.load(test_3DNifti1Path) # Extract the TR time, then eliminate pixel dimension data past 3rd # dime...
8d7f3ce200ef4b2a6e1438f8949c2541c264b292
3,628,745
import os def is_downloaded(folder,path_): """[check if the .html file exists] Args: folder ([folder in which is placed the book]): [description] path_ ([type]): [path of the .html page] Returns: [type]: [description] """ if not os.path.exists(folder): os.maked...
1d480fedb13429baa4bc3234f7a42cafe8dba93c
3,628,746
def calc_brownian_displacement(dt, viscosity, particle_diameter, temperature): """ Calculate brownian motion characteristic displacement per dt """ kb = 1.3806e-23 # (J/K) Boltzmann constant dx = np.sqrt(2*kb*temperature*dt/(3*np.pi*viscosity*particle_diameter)) return dx
1bfdba75d0ad30b1f0dca790c47e004afa39b1b1
3,628,747
def manhattan_distance(v1, v2, norm=False): """ return ||v1 - v2||_1 """ v1, v2 = check_pairwise_vector(v1, v2, norm) diff = v1 - v2 K = np.abs(diff).sum() return K
c41f6c529bb7604a4ca0aa6487d8a2cc5225bf04
3,628,748
def read_data_submit(ftdi, buf, size): """ read_data_submit(context ftdi, unsigned char * buf, int size) -> transfer_control Reads data from the chip. Does not wait for completion of the transfer nor does it make sure that the transfer was successful. Use libusb 1.0 asynchronous API. Parame...
a70652e72d9a425e052b723fc12102742eab6121
3,628,749
def set_spines(ax, plot_params): """ Sets spines of the shift graph to be invisible if chosen by the user Parameters ---------- ax: Matplotlib ax Current ax of the shift graph plot_parms: dict Dictionary of plotting parameters. Here `invisible_spines` is used """ spines ...
4e74ce30f52d465e9470f608cd8c909dfae4d0a5
3,628,750
def update_user(id): """Method to handle update a user""" try: data = request.get_json() or {} user = Authentication() response = user.update_user(id, data) return response except KeyError: return ({"Error": "An error occured"})
398e28b6fb03f505512738ad28824e0c885693b4
3,628,751
import types def _normalize_resources(resources): """ Exclude any resources that have `/facebook` in the path as these are internal and require internal FB infra. Only applies to resources specified in the `dict` format Will also go ahead an invert the dictionary using `_invert_dict` """ if r...
16a0bd8cd1d4e4ec5ad8e929d8be969d95a1924e
3,628,752
import sys def process_file(fn, coverage, percentage, multiple, debug): """ Determine whether there was adequate coverage of bases in this file. NOTE: Returns True if the run was OK. :param fn: :param coverage: :param percentage: :param multiple: :param debug: :return: """ ...
cd7465a0e175138ae73f2a0d46ae729673bf0ec5
3,628,753
def parse_targets(target): """ Parse provided targets :param target: Targets :return: List of IP addresses """ if '-' in target: ip_range = target.split('-') try: t = IPRange(ip_range[0], ip_range[1]) except AddrFormatError: try: st...
94e9a5784f0fa18bf7677e08fed62ee542a429d0
3,628,754
def lgam(x): """Natural log of the gamma fuction: see Cephes docs for details""" if x < -34: q = -x w = lgam(q) p = floor(q) if p == q: raise OverflowError("lgam returned infinity.") z = q - p if z > 0.5: p += 1 z = p - q ...
e165ee0f53aef367350ed964ae2d31374b847d59
3,628,755
def matches(G, queue): """ If the sequence in 'queue' correspond to a node in 'G', return the sequence id, otherwise return False """ if not queue: return False seq = 0 for a in queue: try: seq = G[seq][a] except KeyError: return False ...
859f43f6457b4add4cda88495a8dc6c4a559e5d5
3,628,756
def get_mu_sigma(prices, returns_model='mean_historical_return', risk_model='ledoit_wolf', frequency=252, span=500): """Get mu (returns) and sigma (asset risk) given a expected returns model and risk model prices (pd.DataFrame) – adjusted closing prices of the asset, each row i...
272196b663e43696166fa7134b6dd5d9c6a9c49c
3,628,757
def getPortList(chute): """ Get a list of ports to expose in the format expected by create_container. Uses the port binding dictionary from the chute host_config section. The keys are expected to be integers or strings in one of the following formats: "port" or "port/protocol". Example: po...
eb97568befca72f6d9cb6c455d8d9ad03b13eebf
3,628,758
from typing import Union from typing import Tuple from typing import Any from typing import Sequence def _apply_kraus_single_qubit( kraus: Union[Tuple[Any], Sequence[Any]], args: 'ApplyChannelArgs' ) -> np.ndarray: """Use slicing to apply single qubit channel. Only for two-level qubits.""" zero_left = li...
89b4d1ee99aafc01b8727c7a2c88337fac8e1273
3,628,759
def get_itk_array(path_or_image): """ Get an image array given a path or itk image. Parameters ---------- path_or_image : str or itk image Path pointing to an image file with extension among *TIFF, JPEG, PNG, BMP, DICOM, GIPL, Bio-Rad, LSM, Nifti (.nii and .nii.gz), Analyze, SD...
c8d16f5fb4bc55695183c1cb8b9dd20b57a9909f
3,628,760
def get_datasets_dbpedia(subset, limit): """ Loads dbpedia data from files, split the data into words and generates labels. Returns split sentences and labels. """ datasets = dict() data = [] target = [] target_int =[] target_names = [] filename = 'data/dbpedia/'+subset+'.cs...
03f567e814b3ca0227b558177feb8a2165256cfc
3,628,761
def cv_read(path): """Read an image using opencv. Args: path: path to image Returns: numpy array containing the RGB image """ image = cv2.imread(path) image = bgr_to_rgb(image) return image
3a3fff8edc5d533c394f611c020cc70986844608
3,628,762
def get_git_log_raw_output_for_two_commits(commit1, commit2): """ Get the git log raw output for a git commit. :param commit1: the first commit, which occurs earlier than commit2 :param commit2: the second commit, which occurs later than commit1 returns the git command output """ if not comm...
0acf4c81b38968e376de2294be1c6f6c1a47a53e
3,628,763
def get_info_from_service(service, zconf): """ Resolve service_info from service. """ service_info = None try: service_info = zconf.get_service_info("_googlecast._tcp.local.", service) if service_info: _LOGGER.debug( "get_info_from_service resolved service %s to s...
0d19b5cbe5f8c07fc429f1bcaca3dbcce6978331
3,628,764
import glob import sys import os def recursive_glob(path): """Version-agnostic recursive glob. Implements the Python 3.5+ glob module's recursive glob for Python 2.7+. Recursive glob emulates the bash shell's globstar feature, which is enabled with `shopt -s globstar`. Args: path: A path that may cont...
6a738db431a0230c186f14f6739f1beb20e1ff97
3,628,765
def _ragged_tile_axis(rt_input, axis, repeats): """Tile a dimension of a RaggedTensor to match a ragged shape.""" assert axis > 0 # Outermost dimension may not be ragged. if not ragged_tensor.is_ragged(rt_input): rt_input = ragged_conversion_ops.from_tensor(rt_input, ragged_rank=1) if axis > 1: retur...
1bed0ee8f239be0e370a5a853829699c4cfac511
3,628,766
import re def camelcase_to_snakecase(value: str) -> str: """ Convert a string from snake_case to camelCase. >>> camelcase_to_snakecase('') '' >>> camelcase_to_snakecase('foo') 'foo' >>> camelcase_to_snakecase('fooBarBaz') 'foo_bar_baz' >>> camelcase_to_snakecase('foo_bar_baz') ...
05fe02739e8152bc64ab35bd842162b5d7c3ab4c
3,628,767
from deephaven.TableTools import emptyTable def colorTable(): """ Returns a table which visualizes all of the named colors. :return: table which visualizes all of the named colors. """ return emptyTable(1) \ .updateView("Colors = colorNames()") \ .ungroup() \ ...
4a359979d9f44b8f6174f4a7939fd98da942cb2d
3,628,768
def not_found(error): """Custom error handler for bad requests""" return jsonify(dict(error = 'Not Found, resource not found')), 404
89e125144637258a4b663c489967f6187ce50744
3,628,769
def string_distance(str1, str2): """ 计算两个字符串之间的编辑距离 @author: 仰起脸笑的像满月 @date: 2019/05/15 :param str1: :param str2: :return: """ m = str1.__len__() n = str2.__len__() distance = np.zeros((m + 1, n + 1)) for i in range(0, m + 1): distance[i, 0] = i for i in rang...
1dbdcddd13f7a7f5d62e6028a045f224d10984a1
3,628,770
def best_archiver(random, population, archive, args): """Archive only the best individual(s). This function archives the best solutions and removes inferior ones. If the comparison operators have been overloaded to define Pareto preference (as in the ``Pareto`` class), then this archiver will form ...
20d606f5ea4d76b1c6bd2acfd6bf1017e694f026
3,628,771
import dotenv import os import requests def elections(): """Download raw election data from the Election Guide API. Refer to Election Guide API specifications to understand the data structure and the meaning of specfic fields. .. note:: This function requires a ``.env`` file in the project root with...
effa7356346ec69ff48d07d473ef3ffe86267ed4
3,628,772
import time import logging def google_subdomains(name): """ This method uses google dorks to get as many subdomains from google as possible Returns a dictionary with key=str(subdomain), value=GoogleDomainResult object """ google_results = {} results_in_last_iteration = -1 while len(googl...
a2152b5878b85e2db45f9586ea6f7473defda34e
3,628,773
def contacts_per_person_normal_self_30(): """ Real Name: b'contacts per person normal self 30' Original Eqn: b'30' Units: b'contact/Day' Limits: (None, None) Type: constant b'' """ return 30
cbb35d2d87ed961a7295615598294d231de032dd
3,628,774
import re def process_text2phrases(text, clinical_ner_model): """ 用于从文本中提取Clinical Text Segments :param text:自由文本 :param clinical_ner_model: Stanza提供的预训练NER模型 :return: List[PhraseItem] """ tokenizer = SpanTokenizer() spliters = getSpliters() stopwords = getStopWords() # 将文本处理成正...
c92e3bc458ee75b472cf4766b7d6111004589a62
3,628,775
def get_all(isamAppliance, check_mode=False, force=False): """ Receives all services """ return isamAppliance.invoke_get("Receiving all Services", module_uri)
67f6939c1b7b30898064c1b196bff852424e90e7
3,628,776
from scipy.stats import norm def numeric_outlier(feature, keep_rate=0.9545, mode='right', feature_scale=None): """feature clip outlier. Args: feature: pd.Series, sample feature. keep_rate: default 0.9545, method: default 'right', one of ['left', 'right', 'both'], statistical dist...
6d675cad7694fa6481e979f19dc35b9e99cdff38
3,628,777
def elk_index(hashDict): """ Index setup for ELK Stack bulk install """ index_tag_full = {} index_tag_inner = {} index_tag_inner['_index'] = "hash-data" index_tag_inner['_id'] = hashDict['hashvalue'] index_tag_full['index'] = index_tag_inner return index_tag_full
9adcc529b88b319180e223ba9e47bda51e628478
3,628,778
def build_2d_gauss_data(mu_1, mu_2, sig_1, sig_2, samples, changes={}, w=50, alpha=0.1, lags=0): """Build a bivarite dataset following a Gaussian distribution. Parameters ---------- mu_1 : float Mean of x_1. mu_2 : float Mean of x_2. sig_1 : float ...
4b523e4c417fc223a19a1630004d0479fbe02b42
3,628,779
def parse_between_expression(var_dict, variable, expression_dict): """ Takes an integer variable and a string:string expression_dict. The key string is a semicolon-separated expression denoting the lower and upper bounds of the value it can match, while the value string is a simple arithmetic expression...
221c1d6d5da3f079fb9bad6f9a6908a036720d7c
3,628,780
def get_tag(el): """ :returns: `geographic_msgs/KeyValue`_ message for `<tag>` *el* if any, None otherwise. """ pair = None key = el.get('k') if key != None: pair = KeyValue() pair.key = key pair.value = get_required_attribute(el, 'v') return pair
2650603e5b88a51cef3dce3ef29478c3ccda79ca
3,628,781
from typing import Dict from typing import Any from typing import Tuple def json_to_transactions(json_data: Dict[Any, Any]) -> Tuple[Transaction, ...]: """ Convert json data to tuple of transaction objects. Parameters ---------- json_data : The transactions data where the values are hexad...
2444e778331874eff4b2b385b0b9aab113a436c2
3,628,782
def textureLightingCost(texParam, img, vertexCoord, sh, model, renderObj, w = (1, 1), option = 'tl', constCoef = None): """ Energy formulation for fitting texture and spherical harmonic lighting coefficients """ if option is 'tl': texCoef = texParam[:model.numTex] shCoef = texParam[model...
95a54db4eba8ac799cde237805999ee47078d2ab
3,628,783
def find_reaction_by_index(rxn:list,num:int)-> object: """ find reactions by chemkin reaction index :param rxn: (list) rmg reaction list :param num: (int) chemkin reaction index :return: rmg reaction """ #x1 = [] for react in rxn: if react.index==num: #x1.append(react...
99e98bd29fbce92d538e41f6dda124be2c861dc1
3,628,784
def map_contributor(contributor_dict, role_idx=0): """Map the DMP's contributor(s) to the record's contributor(s).""" cid = contributor_dict["contributor_id"] identifiers = ( {cid["type"]: cid["identifier"]} if is_identifier_type_allowed(cid["type"], contributor_dict) else {} ) ...
d2e55613bc17e3154d557c7e9104b9f0b3eec0a7
3,628,785
def timeIntegration(params): """ TIMEINTEGRATION : Simulate a network of aLN modules Return: rates_exc: N*L array : containing the exc. neuron rates in kHz time series of the N nodes rates_inh: N*L array : containing the inh. neuron rates in kHz time series of the N nodes ...
8f97380549d58e6b20a6df4ede3e16fd84b19d57
3,628,786
def string_similarity(s1, s2): """ Get a float representation of the difference between 2 strings. Args: s1: string s2: string Returns: float """ return SequenceMatcher(None, s1, s2).ratio()
42faeb337edade5290d58a9f712d8de9a51118f5
3,628,787
from re import T import torch def pinv(mat: T.FloatTensor) -> T.FloatTensor: """ Compute matrix pseudoinverse. Args: mat: A square matrix. Returns: tensor: The matrix pseudoinverse. """ U, s, V = torch.svd(mat) S = unsqueeze(s.reciprocal(), axis=0) return multiply(V,...
0727e4b980cf1284920e431ed90e2fa5922083d2
3,628,788
from typing import Mapping def get_remappings_full() -> Mapping[str, str]: """Get the remappings for xrefs based on the entire xref database.""" return _get_curated_registry()["remappings"]["full"]
89dbf2f65a628ec7b5df010df0af5863ad4433ae
3,628,789
def attention(img, att_map): """ Inputs: img -- original image att_map -- attention map, in this case shape (7,7) or (7,7,1,1) else. To visualize just imshow new_img """ att_map = np.reshape(att_map, [7,7]) att_map = att_map.repeat(32, axis=0).repeat(32, axis=1) att_map = n...
262e33d7ec2d4ed0c97acccebc9e98ce8d35babe
3,628,790
import scipy def _winsorize_wrapper(x, limits): """ Wraps scipy winsorize function to drop na's """ if hasattr(x, 'dropna'): if len(x.dropna()) == 0: return x x[~np.isnan(x)] = scipy.stats.mstats.winsorize(x[~np.isnan(x)], ...
49cade19f486d596241ef5eaf18c2a8c3c7a078f
3,628,791
def haversine(lon1, lat1, lon2, lat2, unit = 'km'): """Calculate the great circle distance between two lat/lons. Adapted from https://stackoverflow.com/questions/4913349 Parameters ---------- lon1 : :obj:`float` or vector of :obj:`float` Longitude of 1st point lat1 : :obj:`float` or ve...
09aabd13b60b863d38199a9e156f4d2240e0903e
3,628,792
def get_datatype() -> str: """Returns a user specified datatype to be used elsewhere. Returns ------- desired_datatype: str User specified datatype from list. """ data_func, data_args = get_inquirer("choices") data_args["choices"] = DATATYPE_NAMES datatype_call = data_func(**dat...
3b0a2d187dc61336b3d23e9c2ae88347a2859b5f
3,628,793
def stereonet2xyz(lon, lat): """ Converts a sequence of longitudes and latitudes from a lower-hemisphere stereonet into _world_ x,y,z coordinates. Parameters ---------- lon, lat : array-likes Sequences of longitudes and latitudes (in radians) from a lower-hemisphere stereonet ...
3ecb65cf60bed31199745df50199a6e666f9e3fd
3,628,794
def sky_to_cartesian(rdd, degree=True, dtype=None): """ Transform distance, RA, Dec into cartesian coordinates. Parameters ---------- rdd : array of shape (3, N), list of 3 arrays Right ascension, declination and distance. degree : default=True Whether RA, Dec are in degrees (`...
9e70245ccb2c6c0c97a4be4e2e5c00398d119564
3,628,795
def delete(id): """Delete post function""" data = Post.query.get(id) db.session.delete(data) db.session.commit() flash("Post successfully deleted") return redirect(url_for(".index2"))
4988c197429208e8e54a52370706aa211067cc5d
3,628,796
import six def repeat_n_times(n, fn, *args, **kwargs): """ Repeat apply fn n times. Args: n: n times. fn: a function or a list of n functions. *args: additional args. Each arg should either be not a list, or a list of length n. **kwargs: additional keyword args. Ea...
f08437f560f1ec6eb967c4236e017a6b123df8e0
3,628,797
def get_submissions(request, domain_id=0): """ Takes a POST containing a tar of all MD5's and returns a tar of all missing submissions Heh, this is explicitly against good REST methodology We leave this inside the django-rest 'Resource' so we can use their authentication tools """ try:...
c689f429665867e1b74f8ca8d11bdcfc3e89930f
3,628,798
import uuid def generate_unique_str(allow_dashes=True): """ Generate unique string using uuid package Args: allow_dashes (bool, optional): If true use uuid4() otherwise use hex that will skip dash in names. Defaults to True. """ if allow_dashes: unique_str = str(uuid.uuid4()) ...
9a08364837ea719454b885fcb344631005e7a610
3,628,799