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import os def eval_postprocess(positive_path, negative_type): """ get accuracy """ files = os.listdir(positive_path) log = [] for f in files: score_file = os.path.join(config.result_path, f.split('.')[0] + '_0.bin') positive_file = os.path.join(positive_path, f) argsort = np.fr...
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def compute_q10_correction(q10, T1, T2): """Compute the Q10 temperature coefficient. As explained in [1]_, the time course of voltage clamp recordings are strongly affected by temperature: the rates of activation and inactivation increase with increasing temperature. The :math:`Q_{10}` temperature ...
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import collections def get_frameworks_table(): """ Generates a dataframe containing the supported auto classes for each model type, using the content of the auto modules. """ # Dictionary model names to config. config_maping_names = transformers_module.models.auto.configuration_auto.CONFIG_MAP...
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import torch def extract_video_features(model, get_frame_fn, video_names, video_frame_counts, update_progress_cb=None): """ :param model: :param get_frame_fn: :param video_names: :param video_frame_counts: :param update_progress_cb: :return: VxF np.float32 array """ clip_features ...
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def osarch_is_amd64(): """Check if the architecture maps to amd64.""" return osarch_match("amd64")
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from skimage import exposure def increase_contrast(im, method = 'adaptive'): """ Adative method seems to deal with background gradients the best, but two other options are possible using scikit package """ ## SEE: https://scikit-image.org/docs/dev/auto_examples/color_exposure/plot_equalize.html if me...
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def without(array, *values): """Creates an array with all occurrences of the passed values removed. Args: array (list): List to filter. values (mixed): Values to remove. Returns: list: Filtered list. Example: >>> without([1, 2, 3, 2, 4, 4], 2, 4) [1, 3] ....
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def get_total_mnsp_ramp_rate_violation(model): """Get total MNSP ramp rate violation""" ramp_up = sum(v.value for v in model.V_CV_MNSP_RAMP_UP.values()) ramp_down = sum(v.value for v in model.V_CV_MNSP_RAMP_DOWN.values()) return ramp_up + ramp_down
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def get_row_line(p1,p2): """ Compute x,y values and alpha angle for the line between start (p1) and ending (p2) points """ l,alpha = line_polar(p1,p2) x,y = line_polar_to_cart(l,alpha,p1) return (np.round(x).astype("int"),np.round(y).astype("int"),alpha)
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import re def parse_traceroute(raw_result): """ Parse the 'traceroute' command raw output. :param str raw_result: traceroute raw result string. :rtype: dict :return: The parsed result of the traceroute command in a \ dictionary of the form: :: {1: {'time_stamp2': '0.189', ...
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def get_scheds(aircraft_list, flights): """ Generates a list of Schedule objects with the appropriate attributes Parameters ---------- aircraft_list : list, aircrafts in plan flights : list, list of classes.Flight objects Returns ------- schedules : list, l...
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def _transform_get_item_to_module(module: Module, debug: bool) -> GraphModule: """Transforms the built-in getitem function to ReduceTuple module. This function is usually used to reduce the tuple output of RNNs. Args: module: container module to transform debug: whether to print debug mess...
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from typing import Optional from typing import List import argparse from pathlib import Path def build_parser(argv: Optional[List] = None): """Return ArgumentParser parser for script.""" # Create parser object parser = argparse.ArgumentParser( prog="cw_query_database", description="Interro...
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def symptom_LDAP_user_enabled_emulation_use_group_config_ignored(): """`[ldap] user_enabled_emulation_use_group_config` is being ignored. There is no reason to set this value unless `keystone.conf [ldap] user_enabled_emulation` is also enabled. """ return ( not CONF.ldap.user_enabled_emulat...
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def add_user(): """Add a new user, you must have permissions""" form = UserForm() resp_message = 'Invalid payload.' if not form.validate(): return BadRequest(resp_message) username = form.username.data email = form.email.data password = form.password.data user = User.query.filte...
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import _sha256 def _fetch_remote(remote, dirname=None): """Helper function to download a remote dataset into path Fetch a dataset pointed by remote's url, save into path using remote's filename and ensure its integrity based on the SHA256 Checksum of the downloaded file. Parameters ---------...
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import torch def evaluate(config: ConfigLoader, model, validationloader): """ evaluate model using the data given by validationloader Args: config (ConfigLoader): config of the experiment model (nn.Module): model to be evaluated validationloader (torch.utils.data.DataLoader): dataload...
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from typing import Union from typing import Literal def curve( data: dict, *, ax: Union[plt.Axes, None] = None, curve_layout: Literal["overlay", "stacked", "shifetd"] = "overlay", shade: bool = True, kde_norm: bool = True, order: Union[list, None] = None, kernel_kws: Union[dict, None] ...
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def load_kaldi_hmms(fctx): """Load HMMs from text output of context to pdf binary""" hmms ={} hmm = [] for line in open(fctx): lx = line.strip().split() ctx = (lx[0], lx[1], lx[2]) n = int(lx[3]) pdf = int(lx[4]) # we do not need disambig phones if "#" in ctx[0] or "#" in ctx[1] or "#" in ctx[2]: c...
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def mask (raster, threshold, symName): """Highlight those raster pixels that reach/exceed the given threshold.""" return layer(Local("U8", "Greater Than Equal", Resample(raster,5), threshold), symName)
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def get_vector_w2v(sent:Series, model:gensim.models.keyedvectors.Word2VecKeyedVectors): """ Create a word vector for a given sentence using a Word2Vec model. This function is called in a lambda expression in `core.get_vectors`. Returns list """ tokens = [token for token in sent.phrase if token ...
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def inc(initial_value): """Return arithmetic increase of 1 to initial_value""" print "In inc() subroutine now" return initial_value + 1
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def search(): """Search page ui.""" return render_template(current_app.config["SEARCH_UI_SEARCH_TEMPLATE"])
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def vendor_id(request): """ Return the paddle.com vendor ID as a context variable """ return {"DJPADDLE_VENDOR_ID": settings.DJPADDLE_VENDOR_ID}
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import importlib import inspect import sys def factory(cls, modules=None, **kwargs): """ Factory for creating objects. Arguments are passed directly to the constructor of the chosen class. """ # Format modules into a list if modules is None: modules = [__name__] elif isinstance(modules,bas...
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def filter_samplesheet_by_project(file_path, proj_id, project_column_label='SampleProject', output_ini_headers=False): """ Windows \r\n :param file_path: :type file_path: :param proj_id: :type proj_id: :param project_column...
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import math def ecliptic_obliquity_radians(time): """Returns ecliptic obliquity radians at time.""" return math.radians(23.439 - 0.0000004 * time)
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def hessian_Y(D , Gamma, eigQ, W, sigma_t): """ this is the linear operator for the CG method argument is D Gamma and W are constructed beforehand in order to evaluate more efficiently """ tmp1 = eval_jacobian_phiplus(D, Gamma, eigQ) tmp2 = eval_jacobian_prox_p( D , W) res = - sigma_t *...
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def spec_pix_to_world(pixel, wcs, axisnumber, unit=None): """ Given a WCS, an axis ID, and a pixel ID, return the WCS spectral value at a pixel location .. TODO:: refactor to use wcs.sub """ coords = list(wcs.wcs.crpix) coords[axisnumber] = pixel+1 coords = list(np.broadcast(*coords...
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def share_replica_get(context, replica_id, with_share_data=False, with_share_server=False, session=None): """Returns summary of requested replica if available.""" session = session or get_session() result = _share_replica_get_with_filters( context, with_share_server=with_share...
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async def playing_song(this, ctx: Context): """재생중인 컨텐츠 정보 보기 :param this: self :param ctx: discord.ext.commands.Context """ vc = ctx.voice_client if not vc or not vc.is_connected(): return await ctx.send(embed=embed_ERROR, delete_after=20) player = this.get_player(ctx) if not...
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import time def check_and_record_restart_request(service, changed_files): """Check if restarts are permitted, if they are not log the request. :param service: Service to be restarted :type service: str :param changed_files: Files that have changed to trigger restarts. :type changed_files: List[st...
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from typing import Union import requests def get_user_wantlist(user: Union[UserWithoutAuthentication, UserWithUserTokenBasedAuthentication], username: str, page: Union[int, None] = None, per_page: Union[int, None] = No...
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def gaussian_additive_noise(x, sigma): """Gaussian additive noise. Parameters ---------- x : array input data matrix. sigma : float noise standard deviation. Noise values are sampled from N(0, sigma) for each input feature. Returns ------- x_noise : array output...
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import global_vars as GV def LCOH_fn(well_cost = None, Ed = None, mdot = None, dP_inj = None): """ Calculates the LCOH based on the well cost as capital cost and the pumping cost for operating cost, and the thermal energy recovered. Results match simplified_LCOH_fn, but simplified_LCOH_fn is preferre...
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def confirm_uid(request): """confirm with code sent to uid""" params = request.get_params(schemas.AddUIDCodeSchema()) device = get_device(request) customer = device.customer wc_params = { 'secret': params['secret'], 'code': params['code'], 'attempt_id': params['attempt_id'],...
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def get_coverage(file, label, regions=None, nth=1, readcount=-1): """Get coverage for every `nth` position from alignment file.""" readcount = float(readcount) contigs_coverage = defaultdict(dd) with pysam.AlignmentFile(file) as f: if isinstance(regions, str): regions = [regions] ...
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def equations_to_matrix() -> list: """ :return: augmented matrix formed from user input (user inputs = linear equations) :rtype: list """ n = int(input("input number of rows ")) m = int(input("input number of columns ")) A = [] for row_space in range(n): print("input row ", row_...
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from datetime import datetime async def base_control(timestamp: datetime.datetime, base_id: int, new_faction_id: int, old_faction_id: int, server_id: int, continent_id: int, conn: Connection[Row]) -> bool: """Dispatch a ``BaseControl`` Blip to t...
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def get_ports(): """List all serial port with connected devices. Returns ------- port_list : list(str) Names of all the serial ports with connected devices. """ port_list = list(list_ports.comports()) for i in range(len(port_list)): port_list[i] = port_list[i].device ...
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def same_origin(origin1, origin2): """ Return True if these two origins have at least one common ASN. """ if isinstance(origin1, int): if isinstance(origin2, int): return origin1 == origin2 return origin1 in origin2 if isinstance(origin2, int): return origin2 in o...
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import random def generate_output(model, sequences, idx_word, seed_length=50, new_words=50, diversity=1, return_output=False, n_gen=1): """Generate `new_words` words of outpu...
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def stagewise_grad(w, X, Y, alpha, valpha): """ the gradient loss used in the stage-wise gradient descent (where the value-at-risk is fixed) Parameters ---------- w : d-array, candidate X : d-n array, sample Y : n array, sample alpha : float, quantile leve...
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def parse_location(url): """ Parse latitude and longitude from a Google Maps URL. URL is in the form: https://maps.google.com/maps/ms?...&ll=9.029795,-83.299043&... Sometimes there is a weird ll query param like this: https://maps.google.com/maps/ms?...&ll=9.029795, -83.299043,255&.....
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def conv2d_zeros(name, x, width, filter_size=[3, 3], stride=[1, 1], pad="SAME", logscale_factor=3, skip=1, edge_bias=True): """Conv2dZeros is just a normal Conv2d layer with zero i...
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def deepcopy(value): """ The default copy.deepcopy seems to copy all objects and some are not `copy-able`. We only need to make sure the provided data is a copy per key, object does not need to be copied. """ if not isinstance(value, (dict, list, tuple)): return value if isins...
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import re def split_delimited_symbol(symbol): """ Takes in a symbol that may be delimited and splits it in to a company symbol and share class symbol. Also returns the fuzzy symbol, which is the symbol without any fuzzy characters at all. Parameters ---------- symbol : str The pos...
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import urllib import hashlib def gravatar(email, size=48): """hacked from djangosnippets.org, but basically given an email address render an img tag with the hashed up bits needed for leetness omgwtfstillreading """ url = "http://www.gravatar.com/avatar.php?%s" % urllib.urlencode({ 'grava...
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def carli( p0: np.array, p1: np.array, ) -> float: """ Carli bilateral index, using price information. .. math:: \\text{Carli} = \\frac{\\sum_{i=1}^{n} p_i}{\\sum_{i=1}^{n} p_0} :param p0: Base price vector. :param p1: Current price vector. """ return np.mean(p1 / p0)
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def format_outcome_results(outcome_results): """ Cleans up formatting of outcome_results DataFrame :param outcome_results: outcome_results DataFrame :return: Reformatted outcomes DataFrame """ new_col_names = {"links.learning_outcome": "outcome_id"} outcome_results = outcome_results.rename(c...
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from torch import from_numpy, autograd def infer(batch, model, lite, framework): """ Perform inference on supplied image batch. Args: batch: ndarray Stack of preprocessed images model: deep learning model Initialized EfficientPose model to utilize (RT, I, II, I...
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import os def get_package_data(package): """ Return all files under the root package, that are not in a package themselves. """ walk = [(dirpath.replace(package + os.sep, "", 1), filenames) for dirpath, dirnames, filenames in os.walk(package) if not os.path.exists(os.path.j...
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import sys import requests def delete_saved_search(search_name, owner): """Deletes an existing saved search. This is used when overwriting a saved search.""" try: voyager_server = sys.argv[2].split('=')[1].split('solr')[0][:-1] get_url = "{0}/api/rest/display/ssearch/export".format(voyager_ser...
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def get_edges(t, p): """ Gets the edges (segments) that contain point p as their right endpoint or in the interior """ lr = [] lc = [] for s in AVLTree(t): if s.rp == p: lr.append(s) elif s.lp == p and s.status == INTERIOR: lc.append(s) elif si...
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def register_derived_unit(symbol, singular_name, base_unit, multiple=1, plural_name=None): """Registers a unit based on another unit. i.e. it should be a measure of the same quantity.""" return register_unit(symbol, singular_name, base_unit.quantities, base_unit.quantity_vector, mul...
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from typing import Optional import requests def soup( url: str, *args, session: Optional[requests.Session] = None, **kwargs ) -> bs4.BeautifulSoup: """Get a url as a BeautifulSoup. Args: url: The url to get a soup from. *args: Passed to session.get(). session: The session to use t...
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from win32api import GetSystemMetrics def _get_max_width(): """Hamta information om total skarmbredd och -hojd """ #Hamta information om total skarmbredd over alla anslutna skarmar width = GetSystemMetrics(78) #Hamta information om total skarmhojd over alla anslutna skarmar height = GetSystemM...
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def preprocess_stack_parallel(hier_graph_dict:dict,circuit_name,G): """ Preprocess the input graph by reducing parallel caps, series resistance, identify stacking, adding parallel transistors. Parameters ---------- hier_graph_dict : dict dictionary of all circuit in spice file circuit_n...
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def list_table_names(): """List known table names from configuration, without namespace.""" return get_config().yaml['schemas'].keys()
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def execute_quantum_request(backend, quantum_request): """ Takes a quantum request and execute the content, returns the messages for Alice and Bob. """ method = quantum_request["method"] A_basis = quantum_request["A_basis"] B_basis = quantum_request["B_basis"] if method == "BB84": ...
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def get_ResidualDemand(demand_sector): """loader function for parameter ResidualDemand """ return get_demand_sector_parameter("ResidualDemand", demand_sector)
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import six def parse_bar_separated_phrase(bar_separated_phrase): """ Parses a vertical bar separated phrase into a Phrase object. The expect format is that used by e.g. the LCC: Aber|KON es|PPER gibt|VVFIN keine|PIAT Garantie|NN :param bar_separated_phrase: :return: """ assert i...
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def preprocess(filename): """ Preprocesses the file at the specified name and returns only the branching (conditional) lines in the dump, defined to have (in the format specified for the offline dump versions): 1) Reads the flags register (that is, conditionRegister == 'R'), and 2) Is either tak...
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import os def load_paste_app(filename, appname): """Builds a wsgi app from a paste config, None if app not configured.""" filename = os.path.abspath(filename) app = None try: app = deploy.loadapp("config:%s" % filename, name=appname) except LookupError: pass return app
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def Hunter_Lab_to_XYZ( Lab: ArrayLike, XYZ_n: ArrayLike = TVS_ILLUMINANTS_HUNTERLAB[ "CIE 1931 2 Degree Standard Observer" ]["D65"].XYZ_n, K_ab: ArrayLike = TVS_ILLUMINANTS_HUNTERLAB[ "CIE 1931 2 Degree Standard Observer" ]["D65"].K_ab, ) -> NDArray: """ Converts from *Hunter...
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def post_multipart(host, selector, fields, files): """ Post fields and files to an http host as multipart/form-data. fields is a sequence of (name, value) elements for regular form fields. files is a sequence of (name, filename, value) elements for data to be uploaded as files Return the server's re...
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def client(): """Static link to MongoDB connection.""" return AsyncIOMotorClient(URI)
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def mask_ring_median(values_array, positions_array, alpha): # pragma: no cover """Find outlier pixels in a single ring via a single pass with the median. Parameters ---------- values_array : ndarray The ring values positions_array : ndarray The positions of the values alpha: fl...
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from core.models import Snapshot from pathlib import Path from typing import List def load_main_index(out_dir: Path=OUTPUT_DIR, warn: bool=True) -> List[Link]: """parse and load existing index with any new links from import_path merged in""" try: return Snapshot.objects.all() except (KeyboardInte...
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import subprocess def upstream(env=env): """Get 'upstream' URL for the git repository.""" remotes = remotes('fetch') # Try the remote tracking value for this branch try: upstream = subprocess.check_output( ['git', 'rev-parse', '--symbolic-full-name', '@{u}'], env=env, ).de...
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def ref_model_and_multivariate_training_data(training_data_covar_complex): """ defines a multivariate GP model and the data it is defined by :return: covars :return: train_X, train_Y (training data, from custom_models_simple_training_data_4elements above) :return: model_obj (model object, SingleTask...
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def get_all_movies(request): """ List of all movies names """ try: name = request.GET.get('name', None) offset = request.GET.get('offset', 0) limit = request.GET.get('limit', 10) movies_list = [] count = 0 if not name: movies_list = Movie.objects.filter().order_by('-date_created')[offset:limit] ...
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def is_email_or_url(string: str) -> bool: """Checks if string is either an email or url. """ out = False try: URL_VALIDATOR(string) out = True except ValidationError: pass try: URL_VALIDATOR(string) out = True except ValidationError: pass ...
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def get_synthetic_preds(synthetic_data_func, n=1000, estimators={}): """Generate predictions for synthetic data using specified function (single simulation) Args: synthetic_data_func (function): synthetic data generation function n (int, optional): number of samples estimators (dict of ...
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def arrays_from_dataset(dataset): """Converts a tf.data.Dataset to nested np.ndarrays.""" return tf.nest.map_structure( lambda tensor: np.asarray(tensor), # pylint: disable=unnecessary-lambda tensors_from_dataset(dataset))
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def ldns_buffer_status_ok(*args): """LDNS buffer.""" return _ldns.ldns_buffer_status_ok(*args)
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import argparse import logging import time def parse_args() -> argparse.Namespace: """Parse command line arguments :return: argparse.Namespace """ parser = argparse.ArgumentParser() parser.add_argument('--log', dest='log', choices=['DEBUG', 'INFO', 'WARNING', 'ERROR', 'CRITICAL'], ...
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import torch def upsample(img, scale, border='reflect'): """Bicubical upsample via **CONV2D**. Using PIL's kernel. Args: img: a tf tensor of 2/3/4-D. scale: must be integer >= 2. border: padding mode. Recommend to 'REFLECT'. """ device = img.device kernels, s = _weights_upsample(scale) kernel...
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import copy def first_round_phase(tableau, phase_stabilizer, phase_destabilizer): """This phase round adds a diagonal matrix D to the Z stabilizer matrix such that Z + D = M*M' for some invertible M""" num_qubits = int(len(tableau[0, :]) / 2) x_destab = tableau[0:num_qubits, 0:num_qubits] z_destab...
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async def read_address2account(address: PyAddress, cur: Cursor): """read account by address or raise exception""" user = await read_address2userid(address, cur) if user is None: raise BlockChainError('Not found account {}'.format(address)) return await read_account_info(user, cur)
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def _get_ntddi(osvi): """ Determines the current operating system. This function allows you to quickly tell apart major OS differences. For more detailed information call L{kernel32.GetVersionEx} instead. @note: Wine reports itself as Windows XP 32 bits (even if the Linux host is 64 ...
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def mel_dropout(mel: tf.Tensor, drop_prob: int = 0.05) -> tf.Tensor: """ mel drop out Args: mel (tf.Tensor): [freq, time] float32, float32 drop_prob (int, optional): keep prob. Defaults to 0.05. Returns: tf.Tensor: [freq, time] float32, float32 """ return tf.nn.dropout(mel, rate=1 - drop_prob)
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def getPortableIpRangeServices(config): """ Reads config values related to portable ip and fills up services accordingly""" services = {} attributeError = False if config.portableIpRange.startip: services["startip"] = config.portableIpRange.startip else: attributeError = True ...
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from datetime import datetime import functools import time def function_timer(func): """This is a timer decorator when defining a function if you want that function to be timed then add `@function_timer` before the `def` statement and it'll time the function Arguments: func {function} -- it t...
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def breadcrumbs(category): """ Renders a category tree path using a customizable delimiter. Usage:: {% breadcrumbs <category> %} Example:: {% breadcrumbs category %} """ return {'ancestors': category.get_ancestors()}
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def resnext34(**kwargs): """Constructs a ResNeXt-34 model. """ model = ResNeXt(BasicBlockX, [3, 4, 6, 3], **kwargs).cuda() name = "resnext34" return model, name
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def _draw_latex_header(table, drop_columns): """Draw the Latex header. - Applies header border if appropriate. Example Output: \hline Name & Age & Nickname \\ \hline """ out = "" if table._has_border(): out += _indent_text("\\hline\n", 3) # Drop header colu...
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def register(): """Register a new user, and send them a confirmation email.""" form = RegistrationForm() if form.validate_on_submit(): user = User( first_name=form.first_name.data, last_name=form.last_name.data, email=form.email.data, confirmed=True, ...
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from typing import List def combine_results_dicts(results_summaries: List[dict]) -> dict: """For a list of dictionaries, each with keys 0..n-1, combine into a single dictionary with keys 0..ntot-1""" combined_summary = {} n_overall = 0 for d in results_summaries: n_this = len(d) fo...
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import json def svc_get_objects_in_collection(database, collection): """ Get objects from a collection. These forms of query strings are supported * No query string implies all objects in a collection are returned * A query string with a single "query_string" parameter results in the value of this...
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def conv_model(features, labels, mode): """2-layer convolution model.""" # Reshape feature to 4d tensor with 2nd and 3rd dimensions being # image width and height final dimension being the number of color channels. feature = tf.reshape(features[X_FEATURE], [-1, 28, 28, 1]) # First conv layer will compute 32 ...
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def MapColoringCSP(colors, neighbors): """Make a CSP for the problem of coloring a map with different colors for any two adjacent regions. Arguments are a list of colors, and a dict of {region: [neighbor,...]} entries. This dict may also be specified as a string of the form defined by parse_neighbors.""...
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def direction_resend_n3(limit): """ Вернуть: Направления, в к-рых все исследования подтверждены, и подтверждены после определенной даты в SQL: """ with connection.cursor() as cursor: cursor.execute( """ SELECT id FROM public.directions_napravleniya WHERE ...
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def StringToId(peg_positions): """ input a list of strings representing peg positions returns the game bitfield as integer number """ my_string = [''] * 36 cur_pos = 0 cur_bitfield = 0 for row in ['A', 'B', 'C', 'D', 'E', 'F']: for col in ['1', '2', '3', '4', '5', '6']: ...
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def hide(obj): """Convert object to hidden task. """ converted_object = convert(obj, Hidden=True) return converted_object
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from datetime import datetime def trim_prediction( data, prediction_days, history_days=CREST_RANGE ): """trim predicted dataframe into shape for results Args: data (:obj:`pandas.DataFrame`): data reported history_days (int): number of days BACK to report predic...
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def series_simple_math( ser: pd.Series, function: str, number: int ) -> pd.core.series.Series: """Write some simple math helper functions for series. Take the given series, perfrom the required operation and return the new series. For example. Give the series: 0 0 1 1 ...
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def _gl_matrix(array): """ Convert a sane numpy transformation matrix (row major, (4,4)) to an stupid GLfloat transformation matrix (column major, (16,)) """ a = np.array(array).T.reshape(-1) return (gl.GLfloat * len(a))(*a)
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def create_vshieldr_controller(vmm_domp, provider, vcenter_domain, controller, host_or_ip, **args): """Create vShield Controller""" args = args['optional_args'] if 'optional_args' in args.keys() else args vmm_ctrlrp = CtrlrP(vmm_domp, controller, hostOrIp=host_or_ip, ...
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from typing import List from typing import Optional def get_all_by_type_and_status( *, db_session, service_type: str, is_active: bool ) -> List[Optional[Service]]: """Gets services by type and status.""" return ( db_session.query(Service) .filter(Service.type == service_type) .filt...
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