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def isnetid(s): """ Returns True if s is a valid Cornell netid. Cornell network ids consist of 2 or 3 lower-case initials followed by a sequence of digits. Examples: isnetid('wmw2') returns True isnetid('2wmw') returns False isnetid('ww2345') returns True isnetid('w2345') r...
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def delete_column(idf, list_of_cols, print_impact=False): """ :param idf: Input Dataframe :param list_of_cols: List of columns to delete e.g., ["col1","col2"]. Alternatively, columns can be specified in a string format, where different column names are separ...
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def generate_sql_verification_data(sql_results_instance): """Generates the verification text for a given result sql. Keyword arguments: sql_results_instance -- the sql results returned from athena show_columns -- boolean for whether to show column names or not in the results """ results_string ...
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from pathlib import Path import glob def filter_paths(paths, excluded_paths): """Filter out path matching one of excluded_paths glob Args: paths: path to filter. excluded_paths: List for glob of modules to exclude. Returns: An iterable of paths Python modules (i.e. *py files). """ ...
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def get_user_data(username): """Returns user data.""" user = User.query(User.username_lower == username.lower()).get() if user: user.data["metadata"]["last_updated"]=user.last_updated return jsonify(data=user.data) if user else jsonify(error=404)
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def filter_roidb(roidb): """ Remove roidb entries that have no usable RoIs. """ def is_valid(entry): # Valid images have: # (1) At least one foreground RoI OR # (2) At least one background RoI overlaps = entry['max_overlaps'] # find boxes with sufficient over...
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def _extract_keywords(tweets): """... Args: tweets: List of tweets. """ neg, neu, pos = {}, {}, {} for tweet in tweets: for word in tokenizer.tokenize(RE_RUS_LETTERS.sub(u"", tweet["text"].lower())): keyword = morph.parse(word)[0].normal_form if keyword in ...
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import os def read_captcha(path): """ 读取验证码图片 :param path: 原始验证码存放路径 :return: image_array, image_label:存放读取的iamge list和label list """ image_array = [] image_label = [] file_list = os.listdir(path)#获取captcha文件 for file in file_list: image = Image.open(path + '/' + file)#打开图片...
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from typing import Tuple import torch def getDiscriminatorModels() -> Tuple[torch.nn.Module, torch.nn.Module]: """ Prepares the CycleGAN discriminator models based on the given configuration. Returns ------- Tuple[torch.nn.Module, torch.nn.Module] clean discriminator, distorted discrimina...
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def merge_runs_by_tag(runs, tags): """ Collect the (step, value) tuples corresponding to individual tags for all runs. Therefore the result might look like this: <tagA> + step: - <run-1-steps> - <run-2-steps> + value: - <run-1-values> - <run-2-values> ....
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import math def compute(formula, key, amount=1): """Function that computes the amount of fuel needed to create the component KEY. Uses the formula input to follow the process chain.""" # If you reach FUEL, just return how much <fuel> you need if key == "FUEL": return amount # Count how m...
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import numpy def moment(array,substract_one_in_variance_n=True): """ Calculate the first four statistical moments of a 1D array :param array: :param substract_one_in_variance_n: :return: array with: m0 (mean) m1 (variance) m2 (skewness) m3 (kurtosis) """ a1 = numpy.array(array) m0 = a1...
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def best(z, i, down, values): """ find best number (first possible downwards or upwards) that leads to z == zero at end""" for digit in (range(9, 0, -1) if down else range(1, 10, 1)): z_after = run(z, digit, i, values) if i == 13: # at the end of the number, z must be zero if z_afte...
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from typing import List from typing import Tuple def Gbk_presel(best_gain: List[int], cand1: int, cand2: int, gcode0: int) -> Tuple[int, int]: """ # (i) [0] Q9 : unquantized pitch gain # (i) [1] Q2 : unquantized code gain # (o) : index of best 1st stage vector # (o) : index of best 2nd stag...
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import struct def getCommandString(commandCode): """Returns a readable string representation of a message code """ return struct.pack('<L', commandCode)
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import json import os def funcs_for_external(external_fp_fn, summary_path, rd_path): """ If requesting an external method to get and compare fingerprints, then use this function to get a dictionary of pickle paths for each smiles, and the external fing...
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from typing import Union from typing import Optional def from_graph(graph: nx.Graph, prob: Union[float, int] = 0.1, rng: Optional[np.random.Generator] = None) -> nx.Graph: """Generates mutated graph with the given mutation probability. Parameters ---------- graph ...
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def get_preprocessed_data_set(data_path): """Preprocess the data set and return it. Because a list of targets and the paths to the images are needed later, the class ImageFolderWithTargetListAndPaths is used. Preprocessing follows standard ResNet-preprocessing. Args: data_path: path to folder...
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from typing import List from typing import Tuple def parse_meta_staff_elem( staff_elem: Element, resolution: int, measure_indices: List[int] ) -> Tuple[List[Tempo], List[KeySignature], List[TimeSignature], List[Beat]]: """Return data parsed from a meta staff element. This function only parses the tempos,...
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def get_row_audio(syllable_df, wav_loc, hparams): """ load audio and grab individual syllables TODO: for large sparse WAV files, the audio should be loaded only for the syllable """ # load audio rate, data = prepare_wav(wav_loc, hparams) data = data.astype('float32') # get audio for ea...
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def perform_import(val, setting_name): """ If the given setting is a string import notation, then perform the necessary import or imports. """ if val is None: return None elif isinstance(val, string_types): return import_from_string(val, setting_name) elif isinstance(val, (li...
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def get_root_url(g, website_url): """Given website url, get its root node.""" return ( g.V(website_url) .hasLabel("website") .in_("links_to") )
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def can_see_staff_link(user): """ Return True if the user should see the staff view. Example usage: {{ user|can_see_staff_link }} """ return should_see_staff_view(user)
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from typing import Sequence import random def mutUniformBounded(individual, low, up, indpb): """Mutate an individual by replacing attributes, with probability *indpb*, by a integer uniformly drawn between *low* and *up* inclusively. :param individual: :term:`Sequence <sequence>` individual to be mutated. ...
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def authenticated_only(*args, **kwargs): """Return a permission allowing access to admin and authenticated users. :returns: a permission allowing only super-admin. """ return StrictDynamicPermission(AuthenticatedNeed)
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def initialize(): """Forces the initialization for underlying database back-end module""" return IMPL.initialize()
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def _not_blank(error_msg): """Returns a non-blank validation rule with custom error message.""" return validate.Length(min=1, error=error_msg)
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def _AdjustColHeadings(colHeadings, maxColLabelLen): """ *For Internal Use* removes illegal characters from column headings and truncates those which are too long. """ for i in xrange(len(colHeadings)): # replace unallowed characters and strip extra white space colHeadings[i] = colHeadings[i...
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def authenticated_user(client, account): """Create an authenticated user for a test""" # user = G(User, email='test@gmail.com') account.email = 'test@gmail.com' account.set_password('my_password123') account.save() client.login(email='test@gmail.com', password='my_password123') return accoun...
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def calcENM(atoms, select=None, model='anm', trim='trim', gamma=1.0, title=None, n_modes=None, **kwargs): """Returns an :class:`.ANM` or :class:`.GNM` instance and *atoms* used for the calculations. The model can be trimmed, sliced, or reduced based on the selection. :arg atoms: atoms on...
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def is_affine_st(A: Affine, tol: float = 1e-10) -> bool: """ Check if transfrom is pure scale and translation. :return: ``True`` if Affine transform has scale and translation components only :return: ``False`` if there is non-zero rotation or skew """ (_, wx, _, wy, _, _, *_) = A return ab...
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import logging def build(path): """Build an inference engine from a serialized model. Args: path: model or path to a saved onnx/trt checkpoint """ logging.info("Deserializing the TensorRT engine from {}".format(path)) with open(path, "rb") as f, trt.Logger() as logger, trt.Runtime(logger) ...
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def transient_indices_periodic(T1,N): """Computes indices for transient handling of periodic signals. Computes the indices to be used with a vector u of length N that contains (several realizations of) a periodic signal, such that u[indices] has T1[0] transient samples prepended to each realization. Th...
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import random def make_soup(root, n_p, n_s, verbose=False): """ Make a new word from a root, containing n_prefixes and n_suffixes Also adds a random ending (grammatical form) """ soup = root[:-1] ending = root[-1] assert ending in {'i', 'o', 'e'} added_affixes = [] meanings = [] ...
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def build(conf, name='Enc_Anatomy'): """ Build a UNet based encoder to extract anatomical information from the image. """ spatial_encoder = UNet(conf) spatial_encoder.input = Input(shape=conf.input_shape) l1_down = spatial_encoder.unet_downsample(spatial_encoder.input, spatial_encoder.normalise)...
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import torch def prepare_values(y_true, y_pred): """Converts the input values to numpy.ndarray. Parameters ---------- y_true : torch.tensor Either a CPU or GPU tensor. y_pred : torch.tensor Either a CPU or GPU tensor. Returns ------- y_true, y_pred : numpy.ndarray ...
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import time def timing(f): """ Decorator function to add time elapsed """ @wraps(f) def wrapper(*args, **kwargs): start = time() result = f(*args, **kwargs) end = time() time_elapsed = round(end - start, 2) if isinstance(result, tuple): return (...
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from typing import List def solve(env:Program): """ Solve the program! """ # emit the generated program program = GeneratedMain() program.window_title = "Goes Nowhere, Does Nothing" program.window_width = 512 program.window_height = 512 dependencies:List[str] = [] if len([t f...
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import os import subprocess def hg(args): """Run a Mercurial command and return its output. All errors are deemed fatal and the system will quit.""" full_command = ['hg'] full_command.extend(args) try: output = check_output(full_command, env=os.environ, universal_newlines=True, shell=True...
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def accuracy(y_true: np.ndarray, y_pred: np.ndarray) -> float: """ Calculate accuracy of given predictions Parameters ---------- y_true: ndarray of shape (n_samples, ) True response values y_pred: ndarray of shape (n_samples, ) Predicted response values Returns ------- ...
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import scipy def breakeven_revenue( cost_upfront, carboncost=50, carbontons=0, wacc=7, lifetime=30, degradationrate=0.5, cost_om=15, cost_om_units='$', inflationrate=2.5, taxrate=40, taxrate_federal=None, taxrate_state=None, schedule='macrs', period=5, itc=0, maxiter=1000, xtol='default...
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def get_mesh_pts(N, img_size): """ Algorithm is as follows: First I will place approx 4*sqrt(N) equispaced points around the boundary of the square and then distributed the remaining N-4*sqrt(N) points uniformly at random inside the square. Then, I call the Delaunay algorithm to make the triangu...
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def _create_cell_list(hparams, mode): """Create a list of RNN cells.""" # Multi-GPU cell_list = [] for i in range(hparams.num_layers): # last layers use residual connection if i >= hparams.num_layers - hparams.num_residual_layers: residual_connection = True else: residual_connection ...
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def lvl_profiles(z_axis, sigma_grid, tau_grid, sig_lvls): """Represent sigma and spice profiles as discrete points""" all_profiles = [] num_profs = sigma_grid.shape[-1] for i in range(num_profs): z_lvl = np.interp(sig_lvls, sigma_grid[:, i], z_axis, left=np.nan, right=...
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def get_pydot_attributes(index, dot): """Helper function to get attributes from pydot graph given index""" return dot.get_subgraphs()[index].get_nodes()[0].get_attributes()
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def parse_taxon(file_name): """ :param file_name: :return: """ res = set() with open(file_name, 'r') as IN: for line in IN: res.add(line.strip()) return res
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def ldns_update_upcount(*args): """LDNS buffer.""" return _ldns.ldns_update_upcount(*args)
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import random def mate(ind1, ind2, indpb): """ Executes a uniform crossover that modify in place the two individuals. The attributes are swapped according to the *indpb* probability. """ out_success, in_success = True, True if ind1.out_enabled and random.random() < indpb: out_succe...
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import time def time_convert(ens, cls_to, **kwds): """ Time conversion function """ t0 = time.time() ens_out = ens.convert_to(cls_to, **kwds) t1 = time.time() print("Convert %s to %s with %i pdfs in %.2f s" % (type(ens.gen_obj), cls_to, ens.frozen.npdf, t1-t0)) return ens_out
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def ph_calc_phwater(ref, light, therm, ea434, eb434, ea578, eb578, ind_slp, ind_off, psal=35.0): """ Description: OOI Level 2 pH of seawater core data product, which is calculated using data from the Sunburst SAMI-II pH instrument (PHSEN). This document is intended to be used by OOI pro...
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import os def install_user(): """ returns current user """ user = os.getenv('USER', None) if user is None: raise Exception("Unable to determine current user.") return user
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def Dominates(x, y): """Check if x dominates y. :param x: a sample :type x: array :param y: a sample :type y: array """ return np.all(x <= y) & np.any(x < y)
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def predict(path=None,img=None): """ 图片文字方向预测 """ ROTATE = [0,270,180,90] if path is not None: im = Image.open(path).convert('RGB') elif img is not None: im = Image.fromarray(img).convert('RGB') w,h = im.size thesh = 0.05 xmin,ymin,xmax,ymax = int(thesh*w),int(thesh*h),...
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import requests def get_classic_generated_events(access_token, calendar_id): """Gets a list of classic generated events Args: access_token (string): User's access token to make the request calendar_id (string): ID of the specific calendar that the event exists on Returns: List: l...
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def sumProb(N: int, p: float) -> float: """ Biến ngẫu nhiên nhị thức chỉ có hữu hạn symbol, tổng xác suất của tất cả các symbol này bằng 1. Do đó hàm sumProb cho phép kiểm tra tổng xác suất của biến ngẫu nhiên nhị thức bằng 1. Chứng minh toán học có trong file explanation.pdf Parameters: - N (...
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def get_asset_name_and_format_from_string(title_text) -> []: """Checks input string for name and format :param [] title_text: input string formatted by lines :return: [name, asset_format] """ if ( title_text[0].lower() == "NEW".lower() and title_text[1].lower() == "FREE".lower() ...
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def average_color(color: list): """複数サンプルした時に平均色を求めたい""" c = color avg_color = [c[i : i + 4] for i in range(0, len(c), 4)] avg_color = np.array(avg_color) avg = np.average(avg_color, axis=0) return avg
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from typing import List import logging def vectorize_sentence(sentence: List[str], model, empty_strategy): """ Given a text transform it in a list of vectors using Word Embeddings techniques :param sentence: string containing a sentence :param model: word embedding model :param empty_strategy: whi...
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def frac_diff(dataframe, d, thres=0.01): """ Perform Standard Fracdiff - Expanding Window :param dataframe: :param d: :param thres: :return: """ # Get the weights for the longgest series def get_weights(d, size): w = [1.] for k in range(1, size): w_ = ...
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def register(ref_img, in_img, ref_weights=None, in_weights=None, cmd=None): """Find the 4D affine transform that registers in_img to ref_img Args: ref_img -- (type: ndarray) reference image in_img -- (type: ndarray) input image to be registered ref_weights -- (type: ndarray, def...
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from typing import List def sort_loops_based_on_weights_and_date(params: dict) -> List[WeightedLoop]: """ :param params: dict of params :return: list of sorted, signed, and weighted loops """ signed_weighted_loops = __find_signed_closed_loops(params) # sort based on weights and dates signe...
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import pprint import pycountry def get_alpha2_to_continents_from_wiki(): """Get Country Codes to Continents from Wikipedia. """ data = {} for continent, countries in get_continents_to_countries_from_wiki().items(): for country_name in countries: pprint(pycountry.countries.get(name=...
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import html def make_email_lists(items): """Make an HTML and plain text list of items, to be used in emails. """ if not items or len(items) == 0: return "", "" htm = ["<li>{}</li>".format(html.escape(i if i else "\'blank\'")) for i in items] htm = "<ul>{}</ul>".format("".join(htm)) tex...
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def RemoveDuplicatedVertices(vertices, faces, vnorms = None): """Remove duplicated vertices and re-index the polygonal faces such that they share vertices """ vl = {} vrl = {} nvert = 0 vertList = [] normList = [] for i,v in enumerate(vertices): key = '%f%f%f'%tuple(v) ...
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def is_network_rate_error(exc): """ :param exc: Exception Exception thrown when requesting network resource :return: bool True iff exception tells you abused APIs """ keys = ["429", "Connection refused"] for key in keys: if key in str(exc): return True re...
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def ema(data, n, nans=-1): """ Computes the exponential MA for each row of the input. :param data: pandas dataframe. :param n: MA period. :return: a new dataframe with the MA values. """ if type(data) == pd.Series: data = data.to_frame() ma = data.ewm(span=n, adjust=False).mea...
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def listV(t,v): """ This function is not very 'smart' This function creates a vsipl double or integer vector and copies a list into VSIPL. It will only copy into vectors of type double (real or complex) or of type int. That is to say vectors of type vsip_vview_d, vsip_cvview_d, and vsip_...
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def _to_tensor(x, dtype): """Convert the input `x` to a tensor of type `dtype`. # Arguments x: An object to be converted (numpy array, list, tensors). dtype: The destination type. # Returns A tensor. """ x = tf.convert_to_tensor(x) if x.dtype != dtype: x = tf.cast...
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def get_econstraints(unknowns, segment): """ Runs the mission if the equality constraint values are needed Assumptions: N/A Inputs: state.unknowns [Data] Outputs: constraints [array] Properties Used: N/A ...
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from typing import Optional def mkdir(path: str, mode: int = 0o777, *, dir_fd: Optional[int] = None) -> None: """Makes a directory with mode Call the corresponding :func:`IO.mkdir` upon the default handler. The ``path`` can be a POSIX path or a URI. """ global _DEFAULT_CONTEXT def...
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import time def receipts_as_vc(tx_receipt: TxReceipt, tol_receipt: dict) -> dict: """Convert a raw tx receipt to an unsigned Verifiable Credential""" # Generate a random UUID, not related to anything in the credential uid = unique_id.uuid4().hex # Current time and expiration now = int(time.time(...
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import os def get_filenames(is_training,datadir): """Returns a list of filenames.""" assert os.path.exists(datadir), ( 'Can not find data at given directory!!') if(is_training): labels = [] data_dir = [] with open('/home/qnie/PycharmProjects/ntumotion/training_protocol/fEDM_R_CS_trainimg...
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def join_url(*sections): """ Helper to build urls, with slightly different behavior from urllib.parse.urljoin, see example below. >>> join_url('https://foo.bar', '/rest/of/url') 'https://foo.bar/rest/of/url' >>> join_url('https://foo.bar/product', '/rest/of/url') 'https://foo.bar/product/re...
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import traceback def get_vertices(arcpyPolyline, reverse = False): """Returns points of a polyline feature class as orded list of points :param arcpyPolyline: :return: list of points """ try: points = [] for part in arcpyPolyline: for pnt in part: ...
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def getTaggedCommit(repository, sha1): """Returns the SHA-1 of the tagged commit. If the supplied SHA-1 sum is a commit object, then it is returned, otherwise it must be a tag object, which is parsed to retrieve the tagged object SHA-1 sum.""" while True: git_object = repository.f...
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def register(request): """User creation view.""" if settings.USE_ID_SITE: return redirect('sample:stormpath_id_site_register') form = StormpathUserCreationForm(request.POST or None) if form.is_valid(): try: form.save() user = authenticate( userna...
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from typing import Optional from typing import Union from typing import List def _get_span_replace_glob_and_regex( range_config: range_config_pb2.RangeConfig, is_match_span: bool, is_match_date: bool, span_width_str: Optional[Text]) -> Union[Text, List[Text]]: """Replace span or date spec if static rang...
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from re import T def selu(x: T.Tensor, **kwargs): """ SELU activation. """ return T.selu(x)
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def edge_detect(image): """ this function will get an image as an input convert it to grayscale apply Gaussian Blurring and Canny Edge detection then it will return the output image """ gray_image = cv2.cvtColor(image, cv2.COLOR_BGR2GRAY) gau_blurred = cv2.GaussianBlur(gray_image,(5,5),0) return cv2.Canny(gau_b...
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def solve_classical_ising(J, N, pos): """ function to solve classical optimization problem defined by graph """ # define and build classical Ising model, linear, quad, offset = build_classical_ising(J, N) # Solve classical Ising model solution = solve_ising(linear, quad) # print calss...
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import csv def load_fueltech_map(fixture_name): """ Reads the CSV to load the fueltech map Fields are: fuel_source,fuel_source_desc,tech,tech_desc,fueltech_map,load_type """ MAP_KEYS = [ "fuel_source", "fuel_source_desc", "tech", "tech_desc", ...
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def info_df_row(request: SubRequest) -> pd.Series: """Create a pd.Series that mimicks a row from the info DataFrame.""" name, num, start, end, word = request.param data = {"seg_num": num, "seg_start_idx": start, "seg_end_idx": end, "word_id": word} return pd.Series(data=data, name=name)
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def precision_formatter(layer: Layer): """Format Dot nodes by layer precision""" formatting = {'style': 'filled', 'tooltip': layer.tooltip(), 'fillcolor': precision_colormap[layer.precision]} return formatting
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def extend_columns_eventbased(orig_df): """ Handles adding extra columns based on a condition the value of another column. :param orig_df: the original dataframe :return: a new, modified dataframe """ global COL_NAMES_NEW_FROM_EXTENSION global COL_NAMES_TO_DROP_FROM_EXTENSION #...
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def incidents_per_year_generator(data): """ Generate incidents per year graph Parameters: ----------- data: dataframe Returns: incidents_per_year: dcc.Graph """ data['n_injured+killed'] = data['n_injured'] + data['n_killed'] casualties_by_year = data[['year', 'n_killed', 'n_in...
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import os def join_sqlite( dataset, file=None, table_name=None, compile=False, debug=False, quiet=False, use_cache=True, ): """Install scripts in sqlite.""" if not table_name: table_name = "{db}_table" if not file: file = os.path.join(DATA_DIR, "sqlite.db") ...
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def apps_users(app, **kwargs): """List all users for an application""" app = _okta_get("apps", app, selector=_selector_field_find("label", app)) app_id = app["id"] rv = okta_manager.call_okta(f"/apps/{app_id}/users", REST.get) rv.sort(key=lambda x: x["credentials"]["userName"]) ...
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import six def decode_for_output(output, target_stream=None, translation_map=None): """Given a string, decode it for output to a terminal. :param str output: A string to print to a terminal :param target_stream: A stream to write to, we will encode to target this stream if possible. :param di...
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import html def create_null(n): """ Creates empty data containers. Empty data containers can be used for headless callbacks. They can also be used to store information on the client side""" return html.Div(children=[dcc.Store(id=f'null{i}', data=[]) for i in range(n)])
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def colorline( x, y, z=None, cmap=plt.get_cmap('copper'), linewidth=3, alpha=1.0): """ http://nbviewer.ipython.org/github/dpsanders/matplotlib-examples/blob/master/colorline.ipynb http://matplotlib.org/examples/pylab_examples/multicolored_line.html Plot a colored line with coordinates x and ...
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def populate_data_store(data_store, assignment_id=None, episode_ids=None, steps_per_episode_chunk=None): """Populate a datastore with an assignment. Args: data_store: data_store.DataStore instance to populate. assignment_id: Assignment ID to create or ASSIGNMENT_ID if this is None. ...
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def create_pip_configuration(options): # type: (Namespace) -> PipConfiguration """Creates a Pip configuration from options registered by `register`. :param options: The Pip resolver configuration options. """ if options.cache_ttl: pex_warnings.warn("The --cache-ttl option is deprecated and...
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from typing import Sequence from typing import List def get_motifs(cbn: CausalBayesianNetwork, path: Sequence[str]) -> List[str]: """classify the motif of all nodes along a path as a forward (chain), backward (chain), fork, collider or endpoint""" for node in path: if node not in cbn.nodes(): ...
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def update_manifest_node(node: manifest.ManifestNode) -> bool: """Updates NODE in stateful manifest so it is preserved even as we traverse models unless dbt is refreshed""" ctx.dbt.update_node(node) # ctx.dbt.build_flat_graph() return True
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def validate_data(data, allow_restricted_fields, kind): """ Check that all the fields in `data` correspond to fields in `ALLOWED_ENTITIES[kind]`. `data` is a dictionary/dictionary subclass, `kind` is the datastore entity kind. `allow_restricted_fields` is a bool. """ if kind not in ALLOWED_ENTIT...
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def get_attr_lang(src, attr, default_locale): """ Our index stores localized strings in elasticsearch as, e.g., "name_spanish": [u'Nombre']. This takes the current language in the threadlocal and gets the localized value, defaulting to settings.LANGUAGE_CODE. """ req_lang = amo.SEARCH_LANGUA...
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def share_in_range(x,omegas_low,omegas_high): """ calculate share in range """ # a. allocate memory and inialize Nomegas = omegas_low.size Ntrue = np.zeros(Nomegas) Nactive = 0 # b. compute for i in range(x.size): if ~np.isnan(x[i]): Nactive += 1 for h in r...
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def parse_inFile(fileName): """ Parses a .cmsisdata file to extract the information necessary for project connection file creation Returns a tuple of (project_name device_name core linker_script defineList includePathList cSrcList asmSrcList headersList libsList) """ inFileData = namedtuple('inFile...
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def trio_hits(l_contig, mid_contig_end, blast_hits, olap_dict, cont_dict): """ From a unique contig (l_contig), steps across a repeat (mid_contig) to find the next unique contig, based on best case of adjacent hits in a reference genome (product of the two blast scores). Called by grow_scaffold() ""...
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def remove(): """Remove a vegetable from the current user's vegetables""" # Check if the user already has that vegetable user_veg = [] for vegetable in db.execute('SELECT plant_id FROM users_plants WHERE user_id=?', session['user_id']): user_veg.append(vegetable['plant_id']) new_veg = int(...
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