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def get_text(root: ET.Element, tag: str): """Get the text attribute if it exists.""" elem = root.find(tag) if elem is not None: return elem.text return None
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def star(fn): """Wrap function to expand input to arguments""" return lambda args: fn(*args)
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def modulo(x, m): """ Implements Vensim's MODULO function. Parameters ---------- x: float or xarray.DataArray Input value. m: float or xarray.DataArray Modulo to compute. Returns ------- Returns x modulo m, if x is smaller than 0 the result is given in the range...
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def dump(ret, output, outerr, parse_param_list, logger): """ parses result from method of same name in lo.Volume """ obj = parse_param_list["args"][0] if ret: raise VolServerLLAError("ret=%s, output=%s, outerr=%s" % (ret, output, outerr)) return True
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def check_path(path, unix_mode, limited_doc_files, error_trace, closurized_namespaces, ignored_extra_namespaces, custom_jsdoc_tags, dot_on_next_line, check_trailing_comma, debug_indenta...
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def load_dict(vocab): """ Load dict from vocab """ word_dict = dict() with open(vocab, "r") as fin: for line in fin: cols = line.strip("\r\n").decode("gb18030").split("\t") word_dict[cols[0]] = int(cols[1]) return word_dict
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import re def decode_header(fname): """Returns strings of bytes up to pad sequence that precedes sync pattern (0xAA995566)""" with open(fname, 'rb') as FH: # Header hl = int(hexfromba((FH.read(2))), 16) h = hexfromba(FH.read(hl)) if h != '0ff00ff00ff00ff000': print...
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import argparse def _comma_separated_strings(string): """Parses an input consisting of comma-separated strings.""" error_msg = 'Argument should be a comma-separated list of strings: {}' values = string.split(',') if not values: raise argparse.ArgumentTypeError(error_msg.format(string)) return values
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import os def get_orgs(cid): """Fetch the clubs and orgs from informix.""" orgs = [] phile = os.path.join(settings.BASE_DIR, 'sql/clubsorgs_student.sql') with open(phile) as incantation: sql = '{0} {1}'.format(incantation.read(), cid) connection = get_connection() with connection: ...
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def idct2(block): """Compute a 2D inverse discrete cosine transform.""" return idct(idct(block.T, norm='ortho').T, norm='ortho')
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def add_interval(x, y): """Return an interval that contains the sum of any value in interval x and any value in interval y.""" lower = lower_bound(x) + lower_bound(y) upper = upper_bound(x) + upper_bound(y) return interval(lower, upper)
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def _giant_component(network): """Returns the giant component of a network Parameters ---------- network : networkx.Graph the networkx graph on which giant component extraction is applied """ network_components = sorted(nx.connected_components(network), key=len, reverse=True) return n...
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def hubbard_sparse(j1, j2, dimension): """The Hubbard operator :math:`|j1\\rangle>\\langle j2|` is returned as a matrix of linear size dimension. Parameters ---------- dimension: int j1, j2: int indices of the two states labeling the Hubbard operator Returns ------- sparse.csc_...
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def boost_conservation(x): """Returns an x=1 distribution for ejected nucleons""" dist = np.zeros_like(x) # dist[(x == np.max(x)) & (x > 0.9)] = 1.*20. dist[x == 1.] = 1. / 0.115 return dist
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def build_conda_cfg_env(env=None, **kwargs): """ Configure conda for a specific environment TODO build_venv_config Args: env (Env dict): :py:class:`dotfiles.venv.venv_ipyconfig.Env` Returns: env (Env dict): :py:class:`dotfiles.venv.venv_ipyconfig.Env` """ if env is None: ...
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def convert2numeral(item, cls=int, default=None): """ Convert an argument to a new type unless it is `None`. """ try: num = cls(item) except (ValueError, TypeError): num = default return num
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def buf_sk_oas_pcov_d0_n300(y: X_TYPE = None, s: dict = None, k=1, e=1): """ OAS based estimator for IID observations """ # https://arxiv.org/abs/0907.4698 assert k == 1 return buf_sk_factory(cls=OAS, y=y, s=s, n_buffer=300, n_emp=10, e=e)
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import os def create_template_writer(directory_name): """ Factory function for TemplateWriter, ensures that the directory exists, and creates it if necessary. Args: directory_name the name of the directory to place output files. """ if not os.path.isdir(directory_name): os.makedirs(directory_na...
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async def parse_extra_fields(extra_buff): """ Parses extra buffer to the extra fields vector :param extra_buff: :return: """ extras = [] rw = MemoryReaderWriter(bytes(extra_buff)) ar2 = xmrserialize.Archive(rw, False) while len(rw.get_buffer()) > 0: extras.append(await ar2.va...
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def _bumps(x): """Computes the "bumps" signal. Parameters ---------- x : ndarray Inputs values of shape (n_samples,) with dtype float32 or float64 Returns ------- output : ndarray The value of the signal at given inputs with shape (n_samples,) Notes ----- Input...
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import kerberos, base64 def _get_krb5_ap_req(service, server): """Returns the AP_REQ Kerberos 5 ticket for a given service.""" try: status_code, context = kerberos.authGSSClientInit( 'moira@%s' % server ) kerberos.authGSSClientStep(context, "") token_gssapi = base64.b64decode( kerbero...
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def config_invalid_keys(config): # type: (Dict[str, Any]) -> List[str] """Returns a list of keys that exist in *config* and not in KEYS.""" return [key for key in config.keys() if key not in ConfigKeys]
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def internet_status(): """ Get the internet connection status (Try to connect to an IP address). Returns: True if we have internet access, False otherwise. """ try: urllib2.urlopen('http://{}'.format(test_IP), timeout=1) return True except: return False
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def train_regression(net: Network, dataset: pd.DataFrame, max_epochs: int, learning_rate: float, batch_size: int = 1): """ Train net for a regression task. The dataset consists of features and regression value (in the last c...
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def get_variables(problem, params={}): """ Create a hyperopt search space description for problem. Parameters ---- params: dict - specifies options to manipulate how kinds of variables are encoded. > int_conversion_mode - > The variable type `int` is by default encoded using `quniform`, se...
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from eolearn.core import EOPatch, FeatureType from eolearn.core import OverwritePermission def save_raster_to_eopatch(rasterpath, dataname="raster", outpath=None): """ Save raster with one band to eopatch rasterpath str outpath str dataname str """ with rasterio.open(rasterpath, ...
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async def test_access_token_verifier(monkeypatch, mocker): """Verify AccessTokenVerifier calls correct method of BaseJWTVerifier with correct parameters.""" class AsyncMock(mocker.MagicMock): async def __call__(self, *args, **kwargs): return super().__call__(self, *args, **kwargs) mock_...
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import os def search_conda(): """Search for a conda virtual environment.""" conda_prefix = os.environ.get("CONDA_PREFIX") if conda_prefix is not None: conda_include = join(conda_prefix, 'include') conda_lib = join(conda_prefix, 'lib') else: conda_include = "" conda_lib ...
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def py_cpu_nms(dets, thresh): """Pure Python NMS baseline.""" x1 = dets[:, 0] y1 = dets[:, 1] x2 = dets[:, 2] y2 = dets[:, 3] scores = dets[:, 4] areas = (x2 - x1 + 1) * (y2 - y1 + 1) order = scores.argsort()[::-1] keep = [] while order.size > 0: i = order[0] ke...
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def _process(proc_data): """ Final processing to conform to the schema. Parameters: proc_data: (List of Dictionaries) raw structured data to process Returns: List of Dictionaries. Structured data to conform to the schema. """ for entry in proc_data: int_list = ['job...
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import typing def exposures(package_name: str = None) -> typing.List[ManifestExposureNode]: """A list of all exposures defined in the dbt project. Args: package_name (str): Only return exposures from the specified dbt package. Defaults to returning exposures from all packa...
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from typing import Concatenate def Deeplabv3(weights='pascal_voc', input_tensor=None, input_shape=(512, 512, 3), classes=21, alpha=1., activation=None, model_path=None): """ Instantiates the Deeplabv3+ architecture Optionally loads weights pre-trained on PASCAL VOC or Cityscapes. This model...
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import os def get_default_ca_certs(): """Try to find out system path with ca certificates. This path is cached and returned. If no path is found out, None is returned. """ if not hasattr(get_default_ca_certs, '_path'): for path in ( '/etc/pki/ca-trust/extracted/openssl/ca-bundl...
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def download_urn(load=True): # pragma: no cover """Download scan of a burial urn. Originally obtained from Laser Design. Parameters ---------- load : bool, optional Load the dataset after downloading it when ``True``. Set this to ``False`` and only the filename will be returned. ...
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from typing import Counter import sys def compute_cnt(a_it, a_n_char=1): """Compute counts of classes and characters. Args: ----- a_it: iterator iterator over pairs of class labels and text a_n_char: int length of character n-grams Returns: -------- (cls_cnt, char_cnt): (...
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import six def NamespaceForURI (uri, create_if_missing=False): """Given a URI, provide the L{Namespace} instance corresponding to it. This can only be used to lookup or create real namespaces. To create absent namespaces, use L{CreateAbsentNamespace}. @param uri: The URI that identifies the namespa...
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import os def randomize_queries(queries): """ Formats the results `query.get_randomize`. :type list :param queries: Unformatted queries :rtype str :return Formatted queries """ if len(queries) > 0: separator = ';' + os.linesep return separator.join(queries) + separat...
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import re def dna_to_re(seq): """ Return a compiled regular expression that will match anything described by the input sequence. For example, a sequence that contains a 'N' matched any base at that position. """ seq = seq.replace('K', '[GT]') seq = seq.replace('M', '[AC]') seq = se...
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from io import StringIO def load_data(data_file_url, window_size): """Loads data into preprocessed (train_X, train_y, eval_X, eval_y) dataframes. Returns: A tuple (train_X, train_y, eval_X, eval_y), where train_X and eval_X are Pandas dataframes with features for training and train_y and eval_y a...
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def path_commands(): """Gives a dictionary of all executable files in the environment's PATH >>> import sys >>> path_commands()['python'] == sys.executable or True True """ commands = {} for path_dir in paths(): if not path_dir.isdir(): continue for file_path in ...
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import os import urllib def maybe_download(url, download_dir): """ Download and extract the data if it doesn't already exist. Assumes the url is a tar-ball file. :param url: Internet URL for the tar-file to download. Example: "https://www.cs.toronto.edu/~kriz/cifar-10-python.tar.gz" ...
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from typing import Callable import time def create_timer() -> Callable[[], float]: """Create a timer function that returns elapsed time since creation of the timer function""" start = time.time() def elapsed(): return time.time() - start return elapsed
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import requests import logging def get_recent_posts_instagram(handle): """Api for basic details Arguments: handle {str}: username Returns: json -- returns basic details """ result = None try: url = "https://www.instagram.com/{}/?__a=1".format(handle) response ...
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def svn_io_start_cmd3(*args): """svn_io_start_cmd3(apr_proc_t * cmd_proc, char const * path, char const * cmd, char const *const * args, char const *const * env, svn_boolean_t inherit, svn_boolean_t infile_pipe, apr_file_t infile, svn_boolean_t outfile_pipe, apr_file_t outfile, svn_boolean_t errfile_pipe, apr_file_...
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def get_project(project_id): """ Get a project based on its ID. Example request:: GET /projects/6890192d8b6c40e5af16f13aa036c7dc """ # NOTE: links{ cada experimento} # NOTE: actions{ deleteExperiments, delte_project} # NOTE: info{ parametros del proyecto} api_control = current_ap...
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from typing import Union def fix_nodata( arr: np.ndarray, nodata: Union[np.int32, np.int64, np.float32, np.float64] ) -> np.ndarray: """Set values close to nodata to nan. Parameters: arr: data array to fix nodata: value used to represent nodata Returns: array with imposed...
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import os import logging import requests def download_file(filename, url, overwrite=False): """ Check if file exist and download it if necessary. Parameters ---------- filename : str Full filename with path. url : str Full URL to the file to download. overwrite : boolean (...
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def redis_set(): """ # r.set('foo', 'bar') r.set('food', 'mutton', ex=3) # ex过期时间(秒) 键food的值就变成None r.setex("fruit2", 5, "orange") # 同上 r.set('food', 'mutton', px=3) # px - 过期时间(毫秒) 键food的值就变成None r.psetex("fruit3", 5000, "apple") # 同上 print(r.set('fruit', 'watermelon', nx=True)) #只有n...
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def remove_base64(examples): """Remove base64-encoded string if "path" is preserved in example.""" for eg in examples: if "audio" in eg and eg["audio"].startswith("data:") and "path" in eg: eg["audio"] = eg["path"] if "video" in eg and eg["video"].startswith("data:") and "path" in eg...
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from typing import Mapping def recursive_update(old_dict, update_dict): """ Update one embed dictionary with another, similar to dict.update(), But recursively update dictionary values that are dictionaries as well. based on the answers in https://stackoverflow.com/questions/3232943/update-value-o...
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import ast def _convert_value(value): """ Parse string as python literal if possible and fallback to string. Copied from sacred.arg_parser for performance reasons. """ try: return _restore(ast.literal_eval(value)) except (ValueError, SyntaxError): # use as string if nothing el...
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import copy def merge_dicts(dict1, dict2): """Recursively merge two dictionaries. Values in dict2 override values in dict1. If dict1 and dict2 contain a dictionary as a value, this will call itself recursively to merge these dictionaries. This does not modify the input dictionaries (creates an intern...
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def convert_geoId(fips_code): """Creates geoId column""" return 'geoId/' + str(fips_code).zfill(2)
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def AddImplicitMethodsToTable(table): """Adds implicit methods to actions in table, if applicable.""" return table.row_filter(AddImplicitMethodsToRow)
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import operator def _inline_arraycall(func_ir, cfg, visited, loop, swapped, enable_prange=False, typed=False): """Look for array(list) call in the exit block of a given loop, and turn list operations into array operations in the loop if the following conditions are met: 1. The exit...
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def read_rmsd(fname): """ Reads the RMSD file at the given file name. :param fname: The file's location. :return: The values in the RMSD file. """ rmsd_values = [] with open(fname) as r_file: row_val = None for r_line in r_file: try: row_val = r_l...
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import urllib import urllib.request import os def download(download_url = None, filename_to_save = None): """function for python 2/3 compatible file download from url""" if download_url is None or download_url == '': np('[RPA][ERROR] - download URL missing for download()') return False #...
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import re def parse_ext(exp, exps, filters, mode, isfilter=False): """ Parse one expression from a extended query. Returns a dictionary of information about the search field used Appends the search equry to exps exp is the expression to parse exps is a list of already pars...
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def adder_function(args): """Dummy function to execute returning a single float.""" loc, scale = args return loc + scale
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def auto_correlation(x, axis=-1, max_lags=None, center=True, normalize=True, name='auto_correlation'): """Auto correlation along one axis. Given a `1-D` wide sense stationary (WSS) sequence `X`, the auto correl...
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def get_pixel_dist(pixel, red, green, blue): """ Returns the color distance between pixel and mean RGB value Input: pixel (Pixel): pixel with RGB values to be compared red (int): average red value across all images green (int): average green value across all images blue (int...
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def offset_stress(e, s, eo = 0.2/100.0): """ Helper function to generate yield stress from offset stress/strain data Parameters: e: strain data s: stress data eo: strain offset """ iff = inter.interp1d(e, s) E = s[1] / e[1] eoff = opt.brentq(lambda e: iff(e) - E * (e - e...
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def BaselineSearchPath(all_versions=False): """Returns the list of directories to search for baselines/results, in order of preference. Paths are relative to the top of the source tree. If all_versions is True, returns the full list of search directories for all versions instead of the current version that the...
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def get_event_detector_df(event: int, detector: int): """ Given detector and event returns corresponding df :param event: event number :param detector: detector number :return: pandas dataframe """ df_path = get_event_detector_df_path(event, detector) df = pd.read_parquet(df_path) re...
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def pad_sequences(sequences, tokenizer, sos_token='[CLS]', eos_token='[SEP]', pad_token='[PAD]', max_seq_len=512): """Pad a list of sequences (in text format) with the BERT tokenizer. It add a ``[CLS]`` and ``[SEP]`` tokens at the begining and end of the truncated sentences (the sentences have ``max_seq_len`` l...
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def get_variants_in_gene_or_transcript(db, gene_id=None, transcript_id=None): """Return ExAC and gnomad variants in a gene or transcript Args: db: The mongo database object gene_id, transcript_id: one and only one of these 2 arguments must be specified. This function will query for ...
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import requests def get_api_results(url, id): """[summary] Args: url ([str]): [External API url] id ([int]): [member id] Returns: [json]: [API request response] """ r = requests.get(url.format(id)) return r.json()
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def get_group_pillow_old(pillow_id='GroupPillow', num_processes=1, process_num=0, **kwargs): """ # todo; To remove after full rollout of https://github.com/dimagi/commcare-hq/pull/21329/ This pillow adds users from xform submissions that come in to the User Index if they don't exist in HQ """ assert...
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import codecs def get_pagerduty_api_key(config_file): """Extracts PagerDuty Service Integration API Key from Splunk Config. @param config_file: Full path to file containing Pagerduty API Credentials. @type config_file: str @return: PagerDuty Service Integration API Key. @rtype: str """ co...
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import json def apply_filter(filter_mask, doc): """ Takes a JSON string as input and returns JSON string as output """ json_doc = json.loads(doc) list_elements = [] def root_list(k, jv): if isinstance(jv, dict): try: return jv[k] except KeyE...
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from typing import Optional import argparse def report_format(arg: Optional[str]) -> str: """Check if report format value is valid.""" if arg not in report_formats: raise argparse.ArgumentTypeError("Specified report format is invalid!") return arg
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import warnings def fminbound(func: callable, left: float, right: float, method: str = 'Bounded') -> OptResutType: """Minimum of the function in a closed interval. Arguments: func {callable} -- Callable function. left {float} -- Lower bound of the...
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import pdb def _lump_mean(ndarray, dropna=True, *args, **kwargs): """docstring""" ndarray = np.array(ndarray).flatten() if dropna: try: bad_indexer = np.isnan(ndarray) good_indexer = [False if x else True for x in bad_indexer] except: pdb.set_trace() ...
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def parsed_url(url): # /static?file=zhihu.js&author=gua """ { 'file': 'zhihu.js', 'author': 'gua' } """ index = url.find('?') if index == -1: return url, {} else: path, query_string = url.split('?') args = query_string.split('&') query = {}...
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def play(game=draw_new_board(), first_player=0): """ Play a "Connect 4" game. :param game: a board (by default create a new empty one); this param is useful to continue a previous saved game. :param first_player: player starting to play (by default it is 0, which does not exists, so triggeri...
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def window_optical_flow(vec, window): """ Return pairs of images to generate the optical flow. These pairs contains the first and the last image of the optical flow according to the size of the window. Parameters: ----------- vec : array_like sorted list containing the image ids...
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import os def excel_formatter(data, **kwargs): """Method to format data as an .xlsx table using openpyxl module.""" # get arguments try: table = kwargs["table"] except KeyError: log.critical( "output.formatter_excel: output tag missing table definition. Exiting" ) ...
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import requests def access_token(): """Generate access token using the provided service account key file.""" creds = service_account.Credentials.from_service_account_file( CREDENTIALS_FILE, scopes=[CLOUD_PLATFORM_SCOPE] ) with requests.Session() as session: creds.refresh(goog_auth_requ...
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def filters(_filters: Filter) -> Decorator: """Sets filters on a command function.""" def filter_decorator(func: CommandFunc) -> CommandFunc: setattr(func, "_cmd_filters", _filters) return func return filter_decorator
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def sample_lda(key, num_docs, num_topics, vocab_size, doc_length): """Samples documents and parameters from LDA using default prior parameters. Samples from LDA assuming that each element of doc_topic_alpha is 1/num_topics and each element of topic_word_alpha is 1/vocab_size. Args: key: A JAX PRNG key. ...
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def text_width(text_item): """Returns width of Autocad `Text` or `MultiText` object """ bbox_min, bbox_max = text_item.GetBoundingbox() return bbox_max[0] - bbox_min[0]
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import sqlite3 import fnmatch def banned(address, type="ban", name=False): """ Check if address is banned Checks the database and sees whether the address matches a banlist entry. Mirrors are never banned and always whitelisted :param address: Complete IP address to check :param whitelisted:...
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def get_customers(): """ The Customer List/Create API Endpoint GET: List all customers POST: Create a new customer :return: list or pk """ id = 9 # get_dealer(current_user.id) if request.method == 'GET': customers = db.session.query(Customer).filter( Custom...
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def random_sailency_criterion(w: np.array) -> np.array: """Pruning criterion. Purely random. For benchmarking and testing purposes. Args: w (numpy.array): 1-dimensional numpy array containing the weights to be pruned. Returns: np.array: vector of saliencies. """ return np.random.ra...
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def create_flavor(client, name, ram, vcpus, disk, **args): """ Create a new flavor if one does not exist. """ flavor = _find_flavor(client, name) if flavor: return dict(changed=False, id=flavor.id) flavor = client.flavors.create(name, ram, vcpus, disk, **args) return dict(changed=True, id=f...
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def get_years_for_valid_fwi_values(df) -> list: """ List each year that is sorted """ ffmc_data_years = df[df['ffmc_valid']].year.unique().tolist() bui_data_years = df[df['bui_valid']].year.unique().tolist() isi_data_years = df[df['isi_valid']].year.unique().tolist() # Combine them and remove duplic...
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def darn_simulation(p, Q, Y, n, s, z_p='uniform', param='local'): """ Simulate a temporal network following the :math:`DARN(p)` model. For a temporal network described by a time series of adjacency matrices :math:`\\{A_{ij}^t\\}_{i,j=1,\\ldots, n}^{t=1,\\ldots,s}` the :math:`DARN(p)` model [1]_ describes t...
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import asyncio async def _gen_future(): """returns msg id and future""" loop = asyncio.get_running_loop() global _global_id _global_id += 1 fut = loop.create_future() _global_resp[_global_id] = fut return (_global_id, fut)
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from psutil import virtual_memory import logging def _get_ram(): """ get the RAM of the computer :return int: RAM value in GB """ try: ram = virtual_memory().total / 1024.**3 except Exception: logging.exception('Retrieving info about RAM memory failed.') ram = np.nan r...
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from bs4 import BeautifulSoup def is_html(string): """ Check if string contains html. If html, return true, otherwise, return false. """ result = bool(BeautifulSoup(string, 'html.parser').find()) return result
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import ctypes def ekops() -> int: """ Open a scratch (temporary) E-kernel file and prepare the file for writing. https://naif.jpl.nasa.gov/pub/naif/toolkit_docs/C/cspice/ekops_c.html :return: Handle attached to new EK file. """ handle = ctypes.c_int() libspice.ekops_c(ctypes.byref(ha...
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from typing import Tuple from typing import List def _best_guess( input_runs: Tuple[List[float], List[float], List[float], List[float], List[float]], a_0: float, a_1: float, a_2: float, a_3: float, a_4: float, a_5: float, a_6: float, a_7: float, a_8: float, a_9: float, ...
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def get_level_complete_sound() -> Sound: """Get the level complete sound. :return: :class:`~pygame.mixer.Sound` """ return Sound(__get_game_sound_path(LEVEL_COMPLETE))
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import torch import time def cg_batch(A_bmm, B, M_bmm=None, X0=None, rtol=1e-3, atol=0., maxiter=None, verbose=False): """ Solves a batch of PD matrix linear systems using the preconditioned CG algorithm. This function solves a batch of matrix linear systems of the form A_i X_i = B_i, i=1,...,K, ...
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import os def distplot_table(table, title, columns=3, rows=None, save_to=None, xlabel=None, ylabel=None): """plot distribution plot of a table and save to png a table is defined as a dictionary with 3 or 4 levels and has the following items dictionary['variable name']['gr...
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import aiohttp async def test_enable(aresponses): """Test enabling AdGuard Home parental control.""" # Handle to run asserts on request in async def response_handler(request): data = await request.text() assert data == "sensitivity=TEEN" return aresponses.Response(status=200, text=...
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def html(**kwargs): """ Get HTML <div> used by Recaptcha's JS script Arguments: site_key: * Required * Your Sitekey theme: * The color theme of the widget. * Optional * One of: (dark, light) * Default: light ...
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def load_sig_owners(sig_name): """ Load owners specified sig """ owners = [] owners_file = "sig/{}/OWNERS".format(sig_name) try: with open(owners_file, 'r') as file_descriptor: lines = file_descriptor.readlines() for line in lines: if line.strip()....
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import codecs def get_text(filename:str) -> str: """ Load and return the text of a text file, assuming latin-1 encoding as that is what the BBC corpus uses. Use codecs.open() function not open(). """ f = codecs.open(filename, encoding='latin-1', mode='r') s = f.read() f.close() return...
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import fastapi import typing def get_file( project_id: int, image_id: str, s3=fastapi.Depends(get_s3), user: web.User = fastapi.Depends(get_current_user), ) -> typing.Union[fastapi.responses.FileResponse, fastapi.responses.RedirectResponse]: """Get an image file.""" with get_session() as sessi...
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