content stringlengths 35 762k | sha1 stringlengths 40 40 | id int64 0 3.66M |
|---|---|---|
def init_model(model_name,
network_config,
classes,
word_dict,
init_weight=None,
log_path=None,
learning_rate=0.0001,
optimizer='adam',
momentum=0.9,
weight_decay=0,
metr... | c3fae65c54d12b30ef34b79fbe600d60d7837042 | 30,200 |
import io
def boxed_img(img_data):
"""return base64 encoded boxed image."""
if isinstance(img_data, str):
img_path = img_data
else:
img_path = img_buffer(img_data)
img, result = obj_detect(img_path)
boxed_np_image = draw_boxes(
img.numpy(),
boxes=result["detection_b... | b5dbfaf2297b2faff776550d252b3010350c09db | 30,201 |
def exec(statement, table_name=None, commit=True):
""" execute a SQL statement in the database and commit the transaction.
If a table_name is passed in, then the query will be checked for proper completion, returning a boolean """
conn = connection()
cursor = conn.cursor(buffered=True)
if table_nam... | c62ec09961cd4f284497f88d91f3b64100eef1ff | 30,202 |
def isvalid(gridstr, x, y, test_value):
""" Check if it would be legal to place a in pos x,y """
sq_indexes = ((0, 1, 2), (3, 4, 5), (6, 7, 8))
group_indexes = [(x_ind, y_ind)
for x_ind in sq_indexes[x // 3]
for y_ind in sq_indexes[y // 3]]
for index in range(9... | a8481bbb18409814e54ad669bbb14b71e32b1139 | 30,203 |
import os
def _find_manifest_path():
"""
combs through settings.STATICFILES_DIRS to find the path of the manifest
file.
"""
static_dirs = settings.STATICFILES_DIRS
if len(static_dirs) == 1:
return os.path.join(static_dirs[0], APP_SETTINGS['manifest_file'])
for static_dir in static_... | 62bf502b32b1040bcadf48289311763d53af9531 | 30,204 |
def GilmoreEick(R0_in, v0_in, Requ, \
t_start, t_end, t_step, \
T_l=20.):
"""Run the calculation (Gilmore + Eick)
with the given initial conditions and parameters.
returns: t, R, R_dot, pg, T, i
"""
global T
global T_gas_0, sc_pvapour
T_gas_0 = T0_Ke... | 3cd06254a67b5ba76674aa59dff190e99e5e6075 | 30,205 |
def gamma(x):
"""
element-wise gamma function
"""
return Gamma().forward(x) | 73f53c8010974e171ee7a11bdc2ea705dd3c1eb5 | 30,206 |
def build_model_with_precision(pp, mm, ii, tt, *args, **kwargs):
"""Build model with its inputs/params for a specified precision context.
This is highly specific to this codebase, and not intended to be general API.
Advanced users only. DO NOT use it if you don't know what it does.
NOTE: short argument... | 2af975ce06560dc0637da8b8e24b1ca3e9213d65 | 30,207 |
def bisection(a, b, poly, tolerance):
"""
Assume that poly(a) <= 0 and poly(b) >= 0.
Modify a and b so that abs(b-a) < tolerance and poly(b) >= 0 and poly(a) <= 0.
Return (a+b)/2
:param a: poly(a) <= 0
:param b: poly(b) >= 0
:param poly: polynomial coefficients, low order first
:param to... | e4068887f41078e00006905512e42645a6bc5405 | 30,208 |
from typing import Iterable
def get_roc_with_band(quotes: Iterable[Quote], lookback_periods: int, ema_periods: int, std_dev_periods: int):
"""Get ROCWB calculated.
Rate of Change with Bands (ROCWB) is the percent change of Close price
over a lookback window with standard deviation bands.
Parameters:... | ffed73567f17645fb35e257a69c3ab64002483c4 | 30,209 |
from bs4 import BeautifulSoup
def get_poetry_page_links(html):
"""Read in the html from a poetry page and return an array of links"""
clean_links = []
html_soup = BeautifulSoup(html, 'html.parser')
# remove the table of contents
try:
[e.extract() for e in html_soup.find("div", {"id": "toc"})]
except... | bfa0dc5aa4e63b8aeb42f785dd2afb67e8816474 | 30,210 |
import logging
import os
def setStatusFile(conf:Configuration) -> bool:
"""
Attempts to set the status file according to this server's reported status in Traffic Ops.
.. warning:: This will create the directory '/opt/ORTstatus' if it does not exist, and may
delete files there without warning!
:param conf: An ... | ff40675989110cf9632337a185a7ee35fb4a3b97 | 30,211 |
def _exponential_rv(t, tau, T):
"""Generate truncated exponential random variable from uniform [0, 1) random variable.
Parameters
----------
t : array-like
Uniform [0, 1) random variable.
tau : array-like
Lifetime.
T : array-like
Truncation parameter.
"""
return ... | 356e542f83b2a1b78a11b1dcf65c21dcdd2803a6 | 30,212 |
from typing import Any
import signal
def apply_noise_filtering(
fully_calibrated_gmr: NDArray[(2, Any), int],
scipy_filter_sos_coefficients: NDArray[(Any, Any), float],
) -> NDArray[(2, Any), int]:
"""Apply the result of an empty plate calibration.
Actual empty plate calibration will be performed onc... | f44331ce6286f8c1cbe08d243ee6c52e06d52c11 | 30,213 |
from typing import Any
import io
def read_file(filename: Text, encoding: Text = "utf-8") -> Any:
"""Read text from a file."""
with io.open(filename, encoding=encoding) as f:
return f.read() | de51cb0edd53dbddb3458adbceafddcb5fc3d6e0 | 30,214 |
def pattern_note_to_midi_note(pattern_note_byte, octave_offset=0):
"""
Convert pattern note byte value into midi note value
:param pattern_note_byte: GT note value
:type pattern_note_byte: int
:param octave_offset: Should always be zero unless some weird midi offset exists
:type octave_offset:... | 372f15e9b8b94ac6f37900b85f7d63d75b256669 | 30,215 |
def FileHole(thisMesh, topologyEdgeIndex, multiple=False):
"""
Given a starting "naked" edge index, this function attempts to determine a "hole"
by chaining additional naked edges together until if returns to the start index.
Then it triangulates the closed polygon and either adds the faces to the mesh.... | 1a3da0c9c96147e5a18a228cc01558b4d9daca68 | 30,216 |
def wide_to_narrow(X, Y, bins):
"""
Convert data from predicting a Y(Zbin,Cbin) as a vector to
individual predictions of Y(Zbin,Cbin) given a Zbin and Cbin label
in the input data.
"""
varname = "variable"
valname = "Y"
x_vars = get_xnames()
dev = pd.concat([X, Y], axis=1)
left ... | 3543e2428f4c38eb668428eb68cc1ccdea9fcb0f | 30,217 |
def get_coords(p):
"""Function to get coordinates of N, Ca, C.
It also calculates Cb positions from those.
"""
nres = pyrosetta.rosetta.core.pose.nres_protein(p)
# three anchor atoms to build local reference frame
N = np.stack([np.array(p.residue(i).atom('N').xyz()) for i in range(1,nr... | d87eed8793536b7858ad9aa870c9a5c086b6c8d8 | 30,218 |
import re
import statistics
import string
import copy
import random
def expand_dataset(sentences_file, scores_file, category_getter_fn):
""" Expands Stanford Sentiment Treebank dataset file by substituting nouns, verbs and adjectives in each sentence with synonyms
retrieved from WordNet. Processes into a set ... | 9fcfd01769a8330ffd2fe533ff66b699cef637aa | 30,219 |
import io
def load_as_hsv(fname: str) -> np.ndarray:
"""
Load a file into HSV colour space.
Takes a file path and opens the image then converts to HSV colour space.
returns numpy array dtype float 64. Strips the alpha (fourth) channel if it exists.
Input must be colour image. One channel images w... | c71ed010bcce47f756f5d539f73100257dcae2c0 | 30,220 |
def get_databases ():
"""
Returns a list of all Database objects stored.
"""
return _dbobjects[:] | b5c3d84fc4a58b0a78a3f8f2c4a5a4974a18e337 | 30,221 |
def GenomicRegions_FilterToOverlapping(
new_name, gr_a, other_grs, summit_annotator=None, sheet_name="Overlaps"
):
"""Filter to just those that overlap one in *all* other_grs.
Note that filtering does not change the coordinates, it only filters,
non annotator additional rows are kept, annotators are rec... | 192443e04d5bb3be91574e3494248020cf28be37 | 30,222 |
from typing import Any
from typing import List
from typing import Set
from typing import Mapping
from typing import Iterable
def deep_getsizeof(obj: Any) -> int:
"""
Deeply inspects any Python object for its data usage.
:param o:
:return:
"""
stack: List[Any] = [obj]
seen: Set[int] = set... | d74174137fef9d6348402d46f05f357ba693a1e6 | 30,223 |
def findPowerPlant(mirror, name):
"""Return power plant agent, if it exists"""
if name in mirror.ppDict:
return mirror.ppDict[name]
else:
print("*** Power Plant '%s' not found." % name)
return None | 35e432c7ab6dbe57488e2d7f84c3b6d077f2079a | 30,224 |
import struct
def create_cruise_adjust_msg(spdCtrlLvr_stat, turnIndLvr_Stat, real_steering_wheel_stalk):
"""Creates a CAN message from the cruise control stalk.
Simluates pressing the cruise control stalk (STW_ACTN_RQ.SpdCtrlLvr_Stat)
and turn signal stalk (STW_ACTN_RQ.TurnIndLvr_Stat)
It is probably best no... | 145f5841cebf1db7a80faa36225e9abc92b9ea96 | 30,225 |
import logging
def get_build_history(build_ids):
"""Returns build object for the last finished build of project."""
build_getter = BuildGetter()
history = []
last_successful_build = None
for build_id in reversed(build_ids):
project_build = build_getter.get_build(build_id)
if project_build['status... | faf833ecd6250d0bd90b3477d99502f1cc7a7597 | 30,226 |
def point_translate(point_in, vector_in):
""" Translates the input points using the input vector.
:param point_in: input point
:type point_in: list, tuple
:param vector_in: input vector
:type vector_in: list, tuple
:return: translated point
:rtype: list
"""
try:
if point_in ... | 3b5346062c47f45736d38dce0219f0543b54da6e | 30,227 |
def pcmh_1_1b__1_2_3_4():
"""Clinical advice (telephone encounters)"""
telephone_encounter_table_url = URL('init', 'word', 'telephone_log.doc',
vars=dict(type="meeting", **request.get_vars),
hmac_key=MY_KEY, salt=session.MY_SALT, h... | 21d8c9a0a05aef963d858eca572abe4d23566a52 | 30,228 |
import math
def distance(x1, y1, x2, y2):
"""
l2 distance
"""
return math.sqrt((x1 - x2) * (x1 - x2) + (y1 - y2) * (y1 - y2)) | 709c32bb9bad08d0413c7de80019514f75fc739d | 30,229 |
def slice_signal(signal, window_size, stride=0.5):
""" Return windows of the given signal by sweeping in stride fractions
of window
"""
assert signal.ndim == 1, signal.ndim
n_samples = signal.shape[0]
offset = int(window_size * stride)
slices = []
for beg_i, end_i in zip(range(0, n_s... | 4341fc45df28dd336001252cc8618018257cd257 | 30,230 |
def get_railway() -> User:
"""ιιη¨γ¦γΌγΆζ
ε ±γεεΎγγ
Raises:
DynamoDBError: ιιη¨γ¦γΌγΆζ
ε ±γη»ι²γγγ¦γγͺγ
Returns:
User: ιιη¨γ¦γΌγΆζ
ε ±
"""
railway_user = get_user("railway")
if railway_user is None:
raise DynamoDBError("ιιη¨γ¦γΌγΆζ
ε ±γη»ι²γγγ¦γγΎγγγ")
return railway_user | 23315e567f8136510a8ee821c3167f53aea9556c | 30,231 |
def check_threshold(service, config_high_threshold, config_low_threshold, curr_util):
""" Checks whether Utilization crossed discrete threshold
Args:
service: Name of the micro/macroservice
config_high_threshold: Upper limit threshold to utilization set in config file
config_low_thresho... | 80bf8ab4f5b2bbac35df7c48764114e213fba580 | 30,232 |
import requests
import json
def is_human(captcha_response):
""" Validating recaptcha response from google server.
Returns True captcha test passed for the submitted form
else returns False.
"""
secret = RECAPTCHA_KEYS["secret_key"]
if secret != "":
payload = {'response':captch... | 547eca43bf9994539f2e95b4605df24432bf3998 | 30,233 |
def build_rpn_targets(image_shape, anchors, gt_class_ids, gt_boxes, config):
"""Given the anchors and GT boxes, compute overlaps and identify positive
anchors and deltas to refine them to match their corresponding GT boxes.
anchors: [num_anchors, (y1, x1, y2, x2)]
gt_class_ids: [num_gt_boxes] Integer c... | 85b3dd20df341afd85f276e066f70d999f15bdcf | 30,234 |
def ols_data():
"""
draper and smith p.8
"""
xs = [35.3, 29.7, 30.8, 58.8, 61.4, 71.3, 74.4, 76.7, 70.7, 57.5,
46.4, 28.9, 28.1, 39.1, 46.8, 48.5, 59.3, 70, 70, 74.5, 72.1,
58.1, 44.6, 33.4, 28.6]
ys = [10.98, 11.13, 12.51, 8.4, 9.27, 8.73, 6.36, 8.50,
7.82, 9.14, 8.2... | d741195075a51d1485c9f98031ca405cadf1db93 | 30,235 |
def get_as_type(obj):
"""Find the name of ActionScript class mapped to the class of given python object.
If the mapping for the given object class is not found, return the class name of the object."""
type = obj.__module__ + '.' + obj.__class__.__name__
if class_mappings:
for as_class, py_cla... | 83d5019cb9e54a6ad3d8e4e926edb285953ea53d | 30,236 |
def svn_auth_get_ssl_client_cert_pw_file_provider2(*args):
"""
svn_auth_get_ssl_client_cert_pw_file_provider2(svn_auth_plaintext_passphrase_prompt_func_t plaintext_passphrase_prompt_func,
void prompt_baton,
apr_pool_t pool)
"""
return _core.svn_auth_get_ssl_client_cert_pw_file_provider2(*a... | 585c3b14505a109908fdb109b0fb4c1f5e3df5cd | 30,237 |
def valid_field(obj, field):
"""Returns ``True`` if given object (BaseDocument subclass or an instance thereof) has given field defined."""
return object.__getattribute__(obj, 'nanomongo').has_field(field) | 32e662c5c0e666b7455aacdd6809e31cd20017fe | 30,238 |
def construct_location_name(location: dict) -> str:
"""
Constructs a location name based on the supplied dictionary of elements, ensuring that
they are in the correct format
"""
if location["type"] == "location":
city_name = capwords(location["city"])
if "country" in location:
... | d5728bf409a4520f0b8a508797d67cd00e6676d1 | 30,239 |
def anammox(k_anammox, o2s_dn, nh4, no2, o2):
"""Anammox: NO2- + NH4+ -> N2 + 2H2O
k_anammox - velocity of anammox
o2s_dn - half-saturation oxygen inhibitor constant for anammox and denitrification"""
return k_anammox*nh4*no2*hyper_inhibitor(o2s_dn, o2, 1) | d65fa90d9aaf83982157811dfb7a30d461da75bd | 30,240 |
def courbe_vers_c(l, l2, n0,CP): #c,C
"""
B=Bez()
B.co=[l[0],l[1],l[2],l[3],l[4],l[5]]
B.ha=[0,0]
courbes.ITEM[n0].beziers_knot.append(B)
"""
B=Bez()
B.co=[G_move(l[2],0),
G_move(l[3],1),
G_move(l[4],0),
G_move(l[5],1),
G_move(l[0],0),
G... | 3e3577a90a2fca8d0868c2abf0a96ee73ecdd124 | 30,241 |
def _synthesize_human_beta_vj_background(ts,fn = None, df = None):
"""
_build_vj_background
Parameters
----------
ts: tcrsampler.TCRsampler()
a TCRsampler instance, with gene usage frequencies (ideally computed get_stratified_gene_usage_frequency()
fn: str
file path to MIRA set... | c4f0126ddeb1f0d3fd2ea05e031316de7c0118b2 | 30,242 |
def swissPairings():
"""Returns a list of pairs of players for the next round of a match.
Args:
tournament: the id number of the tournament played
Returns:
A list of tuples, each of which contains (id1, name1, id2, name2)
id1: the first player's unique id
name1: the first playe... | ed55ccffc866a9d7bab93dbf5b0989709a31d287 | 30,243 |
def double_bin_pharmacophore_graph(distance, bins, delta):
""" Assign two bin values to the distance between pharmacophoric points.
Parameters
----------
distance : float
The distance that will be binned.
bins : np.ndarray
Array of bins. It h... | b7dedf4f31b5cd08c9875139df837a57a8117001 | 30,244 |
def get_help(path):
"""
Context Sensitive Help (currently not implemented).
"""
try:
helpitem = HelpItem.objects.get(link=path)
except HelpItem.DoesNotExist:
helpitem = ""
return { 'helpitem': helpitem } | f2fc3599c86e408e3341870539e1572412b5c8f4 | 30,245 |
def validate_ip_pools(data, valid_values=None):
"""Validate that start and end IP addresses are present.
In addition to this the IP addresses will also be validated
"""
if not isinstance(data, list):
msg = _("Invalid data format for IP pool: '%s'") % data
LOG.debug(msg)
return m... | 7e6be47d7707921cca8e197319def6764d0ed775 | 30,246 |
def _GKEConnectNamespace(kube_client, project_id):
"""Returns the namespace into which to install or update the connect agent.
Connect namespaces are identified by the presence of the hub.gke.io/project
label. If there is one existing namespace with this label in the cluster, its
name is returned; otherwise, a... | 3a98c72fac0f0ae297f4fb026368c137779eb5f6 | 30,247 |
def version_cmp(ver1, ver2, ignore_epoch=False):
"""
.. versionadded:: 2015.8.9
Do a cmp-style comparison on two packages. Return -1 if ver1 < ver2, 0 if
ver1 == ver2, and 1 if ver1 > ver2. Return None if there was a problem
making the comparison.
ignore_epoch : False
Set to ``True`` t... | d021ca21fc92166876099a37dac98dddacd1d829 | 30,248 |
def triplet_loss_compute_semihard(feature1, feature2, labels, margin=1.0):
""" triplet loss with semi-hard negative pairs
"""
batch_size = labels.get_shape().as_list()[0]
labels = tf.cast(tf.reshape(labels, [batch_size, 1]), tf.float32)
feature1 = tf.nn.l2_normalize(tf.reshape(feature1, [batch_size... | 153cb805c3aa7ec2b87d29ae15a7c91a3874c95f | 30,249 |
from typing import List
from typing import Type
def get_all_markups() -> List[Type[AbstractMarkup]]:
"""
:returns: list of all markups (both standard and custom ones)
"""
try: # Python 3.10+
entrypoints = entry_points(group="pymarkups")
except TypeError: # Older versions
entrypoints = entry_points()["pymar... | 78bcdb402f52b7a6d6e1b78816ba0d215f449e83 | 30,250 |
def esg_route_list(client_session, esg_name):
"""
This function return the configured static routes
:param client_session: An instance of an NsxClient Session
:param esg_name: The name of the ESG of which the routes should be listed
:return: returns a tuple, the firt item of the tuple contains a lis... | fc8565aba651dbb452a9cab2d80d774130c08b00 | 30,251 |
def create_instance_profile(profile_name, role_name=None):
""" Creates IAM instance profile
:param profile_name: Name of profile to be created
:param role_name: Name of role to attach to instance profile
:return: API response
"""
try:
creat... | 0088f5b0c7b0ac35cff12b859bc4c27662761705 | 30,252 |
import os
def is_empty_dir(target_dir):
"""return is empty directory or not
:param str target_dir: target dir
"""
for root, _, files in os.walk(target_dir):
for f in files:
if os.path.isfile(os.path.join(root, f)):
return False
return True | 8de606b422703b7602d62df0fae5c0b341761236 | 30,253 |
def is_primary(flag):
"""
:return bool: Returns whether the current record is primary alignment
"""
if flag is None:
raise ValueError("No flag associated with this record")
return not SamFlag.IS_UNMAPPED & flag and not SamFlag.IS_SECONDARY_ALIGNMENT & flag | 09d6cfae6568bd10315f10f5b19790db07d05b58 | 30,254 |
import os
def run_js_tests():
"""Run Javascript tests."""
has_xvfb = spawn.find_executable('xvfb-run')
return execute_cmd(
'%s python butler.py js_unittest' % ('xvfb-run' if has_xvfb else ''),
os.environ.copy()) | 2d234a37f21e592a2f47d7675d8815740c7d303f | 30,255 |
from typing import Optional
from typing import Set
def extract_years(text: str, default: Optional[str] = None) -> Set[str]:
"""Try to locate year numbers in a string such as 'circa 1990'. This will fail if
any numbers that don't look like years are found in the string, a strong indicator
that a more preci... | 854f62d5c40d3411a7e792c02d7e03db86c68026 | 30,256 |
def is_absolute_url(parsed_url):
""" check if it is an absolute url """
return all([parsed_url.scheme, parsed_url.netloc]) | 578c1443ec18f9b741cd205763604cba2242ac48 | 30,257 |
import torch
def so3_exp_map(log_rot: torch.Tensor, eps: float = 0.0001) -> torch.Tensor:
"""
Convert a batch of logarithmic representations of rotation matrices `log_rot`
to a batch of 3x3 rotation matrices using Rodrigues formula [1].
In the logarithmic representation, each rotation matrix is repre... | e839d6398502e920bbc7841b1a9fe8f48e9cfce9 | 30,258 |
import pkg_resources
def get_example_summary_file():
"""Convenience wrapper to retrieve file path from package data."""
return pkg_resources.resource_filename('tempset', 'data/electric/summary.zip') | a6fcb3a1f9c78f07e3a5861a93ac8f5a2983bf93 | 30,259 |
def set_pH(in_smi):
"""Function to set the pH of a molecule
Currently uses OpenBabel to perform protonation (to pH 7.4)
Takes a smiles string
Returns the protonated smiles string"""
# Attempt to use the babel that has been included in the distro
try:
d = sys._MEIPASS
babel_path ... | f815f661efe5f660260f4625d586b81e2cf14d13 | 30,260 |
import requests
import json
def get_hardware_status(ip, port, username, password) -> dict:
"""Gets CPU memory statuses IOS-XE\n
Cisco-IOS-XE-platform-software-oper:cisco-platform-software/control-processes/control-process"""
###### Future Use
data = {}
try:
uri = f"https://{ip}:{por... | e1b305871c773a1bbf69e60681a4b2718a7e0dcd | 30,261 |
def q2_2(df: pd.DataFrame) -> tuple:
"""
Calculates mean and median for V2 of df, returns tuple of (mean, median)
"""
V2 = df["V2"]
return V2.mean(), V2.median() | 3e72b2fe71c4afe2e608c80f7aefc529b9681af8 | 30,262 |
def dup_rr_primitive(f, K):
"""Returns content and a primitive polynomial over a ring. """
cont = dup_content(f, K)
if not f or K.is_one(cont):
return cont, f
else:
return cont, dup_exquo_ground(f, cont, K) | 7c590daabb04baba51675a3681013434baec87a7 | 30,263 |
def mk_png(html: str, folder=None) -> str:
"""Return generated PNG file path"""
folder = (local.path(folder) if folder else local.path('/tmp/ccb_png')) / uuid4()
folder.mkdir()
png = folder / 'code.png'
(
convert['-trim', '-trim', '-', png]
<< HTML(string=html, media_type='screen').w... | 448bbfbfff6184648542af6426f063e6f5adf2e9 | 30,264 |
def entry_breadcrumbs(entry):
"""
Breadcrumbs for an Entry.
"""
date = entry.publication_date
if is_aware(date):
date = localtime(date)
return [year_crumb(date), month_crumb(date),
day_crumb(date), Crumb(entry.title)] | 204b061b48622c74bb67e7af90b11b2aa93e3cc7 | 30,265 |
def w_desired_supply_line():
"""
Real Name: b'W Desired Supply Line'
Original Eqn: b'W Delivery Delay*W Expected Customer Orders'
Units: b'SKU'
Limits: (None, None)
Type: component
b''
"""
return w_delivery_delay() * w_expected_customer_orders() | c71161e4e306bf8aa6d7a1b2ea679a228c5a991c | 30,266 |
def _ShardName(name, number):
"""Add a shard number to the end of a target.
Arguments:
name: name of the target (foo#target)
number: shard number
Returns:
Target name with shard added (foo_1#target)
"""
return _SuffixName(name, str(number)) | ce21fb4826fc6626ade140d84195c7db8b616e39 | 30,267 |
import math
def ReadMartiniMolecules(GroFile, First, Last):
""" Generate the normalized coordinates, name, and vector of the Martini molecule
Access the Martini3 small molecules library and reads the parameterized coordinates from it,
with future view of looking at generating automatically generati... | e9979c5cd82f8ff2a63d6f74bb19db3fced3e89d | 30,268 |
def average_gen_fock(filename, fock_type='plus', estimator='back_propagated',
eqlb=1, skip=1, ix=None):
"""Average AFQMC genralised Fock matrix.
Parameters
----------
filename : string
QMCPACK output containing density matrix (*.h5 file).
fock_type : string
Whic... | 6e9869663ed0866e8d5ee81e0b1adfc9f4ee6fa2 | 30,269 |
def start_ignite(test_context, ignite_version: str, rebalance_params: RebalanceParams) -> IgniteService:
"""
Start IgniteService:
:param test_context: Test context.
:param ignite_version: Ignite version.
:param rebalance_params: Rebalance parameters.
:return: IgniteService.
"""
node_cou... | 5cbd9e6946fcbaf063d9de72074a14794f65d234 | 30,270 |
def simplify(expr, *exprs, **kwargs):
"""Simplify the given expression[s]."""
if exprs:
return _coconut_tail_call((tuple), (map)(lambda x: x.simplify(**kwargs), (expr,) + exprs))
else:
return _coconut_tail_call(expr.simplify, **kwargs) | 7982869f98f5296e4e596cfbed909a5c4caa9ba7 | 30,271 |
def ratek_fit_info(rxn_dstr):
""" Read the information describing features of the fits to the
rate constants
"""
# Read the temperatures and the Errors from the lines
pressure_ptt = (
'Pressure:' + app.SPACES +
app.capturing(app.one_of_these([app.FLOAT, 'High']))
)
trang... | dbed1c66b68a6ddbe0d4d8af3e91736131220383 | 30,272 |
def get_news_story(story_id, raw_output=False, debug=False):
"""
Return a single news story corresponding to the identifier provided in story_id
Parameters
----------
story_id: string
The story id is a field you will find in every headline you retrieved with the function get_news_headlines.... | 0ad3994e8bd8bbcfac902c55bdb1975da4008076 | 30,273 |
def ifrt2(a):
"""Compute the 2-dimensional inverse finite radon transform (iFRT) for
an (n+1) x n integer array.
Parameters
----------
a : array_like
A 2-D (n+1) row x n column integer array.
Returns
-------
iFRT : 2-D n x n ndarray
Inverse Finite Radon Transform array ... | 2fa7f3c8fc3b6ed0e7ee9c58d9587644314d6608 | 30,274 |
def get_levelized_cost(solution, cost_class='monetary', carrier='power',
group=None, locations=None,
unit_multiplier=1.0):
"""
Get the levelized cost per unit of energy produced for the given
``cost_class`` and ``carrier``, optionally for a subset of technologie... | 96b8f9a9fceaa932bcee72033e73ad8b9551759d | 30,275 |
def weighting_system_c():
"""C-weighting filter represented as polynomial transfer function.
:returns: Tuple of `num` and `den`.
See equation E.1 of the standard.
"""
f1 = _POLE_FREQUENCIES[1]
f4 = _POLE_FREQUENCIES[4]
offset = _NORMALIZATION_CONSTANTS['C']
numerator = np.... | 02b77bafbbba2671c15667f81bad965383b21f33 | 30,276 |
def make_fully_qualified_url(url):
""" Ensure url is qualified """
if url.startswith("//"):
return "https:" + url
if url.startswith("/"):
return "https://en.wikipedia.org" + url
assert url.startswith("http"), "Bad URL (relative to unknown location): " + url
return url | 9b87adaa0a30c5a09e81dd73aea3f282af92ac53 | 30,277 |
def reduce_range_overlaps(ranges):
"""Given a list with each element is a 2-tuple of min & max, returns a similar list simplified if possible. """
ranges = [ea for ea in ranges if ea]
if len(ranges) < 2:
return ranges
first, *ranges_ordered = list(reversed(sorted(ranges, key=lambda ea: ea[1] - e... | fe62dd8bbb1fd0a985757cc417c9c230659294c5 | 30,278 |
def get_averages_by_addon_from_bigquery(today, exclude=None):
"""This function is used to compute the 'hotness' score of each add-on (see
also `update_addon_hotness()` cron task). It returns a dict with top-level
keys being add-on GUIDs and values being dicts containing average
values."""
client = c... | 5c50f10ffa3c15beab6ae204bbd796050e85e66a | 30,279 |
def main_menu():
"""Dialog for the ATM Main Menu."""
# Determines action taken by application.
action = questionary.select(
"Would you like to check your balance, make a deposit or make a withdrawal?",
choices=["check balance", "deposit", "withdrawal"],
).ask()
return action | add02dfc371c24e89c73e336c5efe3ff800e6d00 | 30,280 |
def load_sentences_from_naf(iteration, root, naf_entity_layer, modify_entities):
"""Load sentences from a single NAF file (already loaded). Potentially replace entity mentions with their identity."""
if modify_entities:
to_replace=map_mentions_to_identity(root, naf_entity_layer)
# Create list of l... | 054a5adadcd170ac5525bc0bc6d5dd32bcdf14ae | 30,281 |
def get_detection_eff_matrix(summary_table, num):
"""Computes the detection efficiency matrix for the input detection summary table.
Input argument num sets the maximum number of true objects per blend in the
test set for which the
detection efficiency matrix is to be created for. Detection efficiency ... | 8fa28c1f278bc14ee6877f50297f6554bc413392 | 30,282 |
def unicode_to_base64(text, strip_newlines=True):
"""Safe conversion of ``text`` to base64 representation using
utf-8 bytes.
Strips newlines from output unless ``strip_newlines`` is `False`.
"""
text = to_unicode(text)
if strip_newlines:
return text.encode('utf-8').encode('base64').re... | 34593c1811dac718bc82f47e590da62d1d704de4 | 30,283 |
def _valid_path(g, path, master_nodes):
"""
Test if path contains masternodes.
"""
valid = True
if path[0] not in master_nodes: valid = False
if path[-1] not in master_nodes: valid = False
for n in path[1:-1]:
if 'pin' in g.node[n]:
# if _is_master(g, n):
# ... | e91c0a53b994316073f97e854b9e4933d760c078 | 30,284 |
import io
def usgs_stonecr_call(*, resp, year, **_):
"""
Convert response for calling url to pandas dataframe, begin parsing df
into FBA format
:param url: string, url
:param resp: df, response from url call
:param year: year
:return: pandas dataframe of original source data
"""
df... | 41d63f8175eaa0b5a5b2d03e40ea0bfb73ed70d4 | 30,285 |
def read_line(**kwargs):
"""
Gets next line in input. If `skip_empty` is True, only lines with
at least one non-whitespace character are returned.
:return: str
"""
tokenizer = _get_tokenizer(kwargs)
skip_empty, rstrip = kwargs['skip_empty'], kwargs['rstrip']
try:
if skip_empty:
... | 82a24906872076afc26193dcd8bfb3be225c70d9 | 30,286 |
def _coco17_category():
"""
Get class id to category id map and category id
to category name map of COCO2017 dataset
"""
clsid2catid = {
1: 1,
2: 2,
3: 3,
4: 4,
5: 5,
6: 6,
7: 7,
8: 8,
9: 9,
10: 10,
11: 11,
... | 0a242332391c5fbf21be0c434c64c104db1b3055 | 30,287 |
def identical_sort(df_true, df_subm):
"""
Check if 2 DataFrames are sorted the same
This check is only conducted whenever a perfect F1 score is
achieved.
It only verifies whether or not the first and last tuple have the same
relative order in both DataFrames. It is thus not an explicit check! ... | 94363275f66fe84829f90f49afa57237fa05c1a5 | 30,288 |
def bigbird_block_sparse_attention(
query_layer, key_layer, value_layer, band_mask, from_mask, to_mask,
from_blocked_mask, to_blocked_mask, rand_attn, num_attention_heads,
num_rand_blocks, size_per_head, batch_size, from_seq_length, to_seq_length,
from_block_size, to_block_size):
"""BigBird attention ... | 73a486a26510137de84017063e624de5379e4fbe | 30,289 |
def color_diff(rgb_x: np.array, rgb_y: np.array) -> float:
"""
Computes the distance between two colors using Euclidean distance.
:param rgb_x: a vector of one rbg color
:param rgb_y: a vector of another rgb color
:return: the distance between two vectors
"""
return np.sum((rgb_x - rgb_y) *... | 0e9136c68a00f5d85d2a13311f083d8036329b0a | 30,290 |
import argparse
def parse_args(args):
"""
Parses the arguments of the benchmark plot cli
Arguments:
args: Program arguments, excluding first argument (filename being executed)
"""
parser = argparse.ArgumentParser(description="Jet benchmark plot tool")
parser.add_argument(
"-c",... | 837b812a54f82d0294ab8b83679d08290c86b78d | 30,291 |
def functions(node):
""":returns: list of function tags for node, or an empty list."""
if not node.source:
return []
a = node.source[FUNC]
if a == '--' or a == '' or a is None:
return []
return a.split('-') | 3167ebd1d382b5ac8b46dd4565cd2184844840f1 | 30,292 |
def _calibrate_bg_and_psf_im(im, divs=5, keep_dist=8, peak_mea=11, locs=None):
"""
Run background & PSF calibration for one image.
These are typically combined from many fields and for each channel
to get a complete calibration.
This returns the accepted locs so that a z-stack can be estimated
... | 3eb73736470253c72b03875415ea413802470153 | 30,293 |
def get_default_database_engine(rm: ResourceManager, database_name: str) -> Engine:
"""
Get the default engine of the database. If the default engine doesn't exists
raise FireboltError
"""
database = rm.databases.get_by_name(name=database_name)
bindings = rm.bindings.get_many(database_id=databa... | c26d7bcac96b0272b38126cae824d7d0f1df0261 | 30,294 |
def _execute_onestep(seq, order=2, verbose=False):
"""
This function runs one full step of the non-sequential recursive window-
substitution algorithm. (For pairs or order=2, called NSRPS).
For internal use only, as this function does not carry out sanity checks.
For general/external usage, refer t... | 5f655cc5f67ddbd9ae27b0461a9932e87d2a91b9 | 30,295 |
def getModulePower():
"""Returns the current power consumption of the entire module in mW."""
return float(readValue(i2cAddr='0041', channel='0', valType='power')) | 4bfb362ffdeb9a210cb8bfc5cc203d50f9c28582 | 30,296 |
def roots(repo, subset, x):
"""``roots(set)``
Changesets in set with no parent changeset in set.
"""
s = set(getset(repo, repo.changelog, x))
subset = [r for r in subset if r in s]
cs = _children(repo, subset, s)
return [r for r in subset if r not in cs] | 2acb2f803966c3024a5d148e4856d44c13287cef | 30,297 |
import unittest
def _as_path_test(ctx):
"""Unit tests for maprule_testing.as_path."""
env = unittest.begin(ctx)
asserts.equals(
env,
"Foo\\Bar\\Baz\\Qux",
maprule_testing.cmd_strategy.as_path("Foo/Bar/Baz\\Qux"),
msg = "assertion #1",
)
asserts.equals(
env,
... | a3a21effafe0a9209a43c3e917745890c2679e1a | 30,298 |
def alpha_optimisation (problem, alpha_range=np.arange(0.0, 1.1, 0.1)):
"""
This method is used to optimise the alpha parameter.
Alpha parameter is used in the calculation of edges savings:
saving = distance_saving * (1 - alpha) + revenue * alpha
The higher is alpha the bigger is the importanc... | 6c2e8450ac72b89661a48c1a14971f49afc37dfb | 30,299 |
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