Add files using upload-large-folder tool
Browse files- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/_tabpfgen_generate.py +131 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/gen_20260511_061054.log +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/input_snapshot.json +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/public_gate/normalized_schema_snapshot.json +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/public_gate/public_gate_report.json +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/public_gate/staged_input_manifest.json +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/run_config.json +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/runtime_result.json +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/public/staged_features.json +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/public/test.csv +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/public/train.csv +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/public/val.csv +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/tabpfgen/adapter_report.json +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/tabpfgen/adapter_transforms_applied.json +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/tabpfgen/model_input_manifest.json +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/tabpfgen-c5-6732-20260511_061054.csv +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/tabpfgen_meta.json +3 -0
- syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/train_20260511_061054.log +3 -0
syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/_tabpfgen_generate.py
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import os
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import numpy as np
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import pandas as pd
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import json
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from tabpfgen import TabPFGen
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df = pd.read_csv("/work/output-Benchmark-trainonly-v1/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/public/train.csv")
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target_col = "class"
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target_missing = df[target_col].isna()
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if target_missing.any():
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dropped = int(target_missing.sum())
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df = df.loc[~target_missing].copy()
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print(
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f"[TabPFGen] Dropped {dropped} rows with missing target '{target_col}'"
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)
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if df.empty:
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raise ValueError(
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f"[TabPFGen] No rows remain after dropping missing target '{target_col}'"
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)
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feature_cols = [c for c in df.columns if c != target_col]
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cat_encodings = {}
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for col in feature_cols:
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if df[col].dtype == object or str(df[col].dtype) == 'category':
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cats = sorted(df[col].dropna().unique().tolist(), key=str)
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cat_map = {v: i for i, v in enumerate(cats)}
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df[col] = df[col].map(cat_map).astype(float)
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cat_encodings[col] = cats
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print(f"[TabPFGen] Label-encoded '{col}' ({len(cats)} categories)")
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target_cats = None
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if df[target_col].dtype == object or str(df[target_col].dtype) == 'category':
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cats = sorted(df[target_col].dropna().unique().tolist(), key=str)
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t_map = {v: i for i, v in enumerate(cats)}
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df[target_col] = df[target_col].map(t_map).astype(float)
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target_cats = cats
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print(f"[TabPFGen] Label-encoded target '{target_col}' ({len(cats)} categories)")
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X = df[feature_cols].values.astype(np.float32)
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| 42 |
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y = df[target_col].values
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| 43 |
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fit_rows_cap = max(1, int(os.environ.get("TABPFGEN_FIT_MAX_ROWS", "50000")))
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| 44 |
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if len(X) > fit_rows_cap:
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| 45 |
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rng = np.random.default_rng(42)
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| 46 |
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idx = np.sort(rng.choice(len(X), size=fit_rows_cap, replace=False))
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| 47 |
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X = X[idx]
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| 48 |
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y = y[idx]
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| 49 |
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print(f"[TabPFGen] Downsampled fit rows -> {len(X)} (cap={fit_rows_cap})")
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| 50 |
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target_n = int(6732)
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| 51 |
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| 52 |
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for i in range(X.shape[1]):
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| 53 |
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col_vals = X[:, i]
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| 54 |
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mask = np.isnan(col_vals)
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| 55 |
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if mask.any():
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mean_val = np.nanmean(col_vals)
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| 57 |
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X[mask, i] = mean_val if not np.isnan(mean_val) else 0.0
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chunk_rows = max(1, int(os.environ.get("TABPFGEN_GEN_CHUNK_ROWS", "256")))
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device = (os.environ.get("TABPFGEN_DEVICE") or "auto").strip() or "auto"
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| 61 |
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n_sgld_steps = max(1, int(os.environ.get("TABPFGEN_N_SGLD_STEPS", "1000")))
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sgld_step_size = float(os.environ.get("TABPFGEN_SGLD_STEP_SIZE", "0.01"))
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sgld_noise_scale = float(os.environ.get("TABPFGEN_SGLD_NOISE_SCALE", "0.01"))
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| 65 |
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# TabPFGen v0.1.x API:仅支持 n_sgld_steps / sgld_* / device。
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| 67 |
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# (旧版脚本中的 energy_*_chunk 与上游 TabPFGen 不一致,会导致 TypeError。)
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| 68 |
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gen = TabPFGen(
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| 69 |
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n_sgld_steps=n_sgld_steps,
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sgld_step_size=sgld_step_size,
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sgld_noise_scale=sgld_noise_scale,
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| 72 |
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device=device,
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| 73 |
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)
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| 74 |
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| 75 |
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print(
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| 76 |
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f"[TabPFGen] Generating {target_n} rows via generate_classification "
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| 77 |
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f"(chunk_rows={chunk_rows}, device={device}, "
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| 78 |
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f"n_sgld_steps={n_sgld_steps}, sgld_step_size={sgld_step_size}, "
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| 79 |
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f"sgld_noise_scale={sgld_noise_scale})"
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| 80 |
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)
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| 81 |
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x_parts = []
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| 82 |
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y_parts = []
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| 83 |
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remaining = target_n
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| 84 |
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while remaining > 0:
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| 85 |
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take = min(chunk_rows, remaining)
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| 86 |
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X_part, y_part = gen.generate_classification(X, y, n_samples=take)
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| 87 |
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x_parts.append(np.asarray(X_part))
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| 88 |
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y_parts.append(np.asarray(y_part))
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| 89 |
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remaining -= take
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| 90 |
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print(f"[TabPFGen] chunk done: take={take}, remaining={remaining}")
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| 91 |
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| 92 |
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X_syn = np.concatenate(x_parts, axis=0)
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| 93 |
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y_syn = np.concatenate(y_parts, axis=0)
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| 94 |
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| 95 |
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syn_df = pd.DataFrame(X_syn, columns=feature_cols)
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| 96 |
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syn_df[target_col] = y_syn
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| 97 |
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| 98 |
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for col, cats in cat_encodings.items():
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| 99 |
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codes = np.round(syn_df[col].values).astype(int)
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| 100 |
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codes = np.clip(codes, 0, len(cats) - 1)
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syn_df[col] = [cats[c] for c in codes]
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| 102 |
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| 103 |
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if target_cats is not None:
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| 104 |
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codes = np.round(syn_df[target_col].values).astype(int)
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| 105 |
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codes = np.clip(codes, 0, len(target_cats) - 1)
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| 106 |
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syn_df[target_col] = [target_cats[c] for c in codes]
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| 107 |
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| 108 |
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if len(syn_df) > target_n:
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| 109 |
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print(f"[TabPFGen] Trimming rows: {len(syn_df)} -> {target_n}")
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| 110 |
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syn_df = syn_df.iloc[:target_n].copy()
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| 111 |
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elif len(syn_df) < target_n:
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| 112 |
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deficit = target_n - len(syn_df)
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| 113 |
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print(f"[TabPFGen] Padding rows: {len(syn_df)} -> {target_n} (deficit={deficit})")
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| 114 |
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if len(syn_df) > 0:
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| 115 |
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extra = syn_df.sample(n=deficit, replace=True, random_state=42)
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| 116 |
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syn_df = pd.concat(
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| 117 |
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[syn_df.reset_index(drop=True), extra.reset_index(drop=True)],
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| 118 |
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ignore_index=True,
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| 119 |
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)
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| 120 |
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else:
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| 121 |
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syn_df = df[feature_cols + [target_col]].sample(
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| 122 |
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n=target_n, replace=True, random_state=42
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| 123 |
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).reset_index(drop=True)
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| 124 |
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| 125 |
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syn_df = syn_df[list(df.columns)]
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| 126 |
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if len(syn_df) != target_n:
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| 127 |
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raise RuntimeError(
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| 128 |
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f"[TabPFGen] Row alignment failed: got {len(syn_df)}, expected {target_n}"
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| 129 |
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)
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| 130 |
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syn_df.to_csv("/work/output-Benchmark-trainonly-v1/c5/tabpfgen/tabpfgen-c5-20260511_061054/tabpfgen-c5-6732-20260511_061054.csv", index=False)
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| 131 |
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print(f"[TabPFGen] Saved {len(syn_df)} rows -> /work/output-Benchmark-trainonly-v1/c5/tabpfgen/tabpfgen-c5-20260511_061054/tabpfgen-c5-6732-20260511_061054.csv")
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/gen_20260511_061054.log
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version https://git-lfs.github.com/spec/v1
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oid sha256:1903405b611216531665a2f28b7f544b5c21b50a521bbdca146f773fad8baa87
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size 7005
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/input_snapshot.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:52291b91e8e5a9621446682439a7900b3d8d7e58c3825607dae340737b8b2c21
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size 1351
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/public_gate/normalized_schema_snapshot.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:6a82dde0a0b02bb1e4531b9f5e04984f7873c1c4981a2b343015d3a380445ebf
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size 10604
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/public_gate/public_gate_report.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:aea5012ab6077fba838eb8fdd15d8d8fd7e74ddeebf20f9317e675f0f5ab48a8
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size 912
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/public_gate/staged_input_manifest.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:93fc022d4623dc6b427cafb4bc02dcca0772fd075741858798fb76bbec3ff5dc
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size 11420
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/run_config.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:c2018351074cca9e15290b9997a183181b3be832adda04f4846a2da88cad5e73
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size 2012
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/runtime_result.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:a6f48376f0e4b48ed211a90be4fce6e84691019cca111aa1e50197da63dede1e
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size 887
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/public/staged_features.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:0ace7d0e8b3fdcd849ddbae15387f2fbaeb5a1756991805f39eca5eae193e7f7
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size 2303
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/public/test.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:22374ee05e54a92c07546639c8485d89e02a7c7b38db99ef9ac5dfb259bd032d
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size 125218
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/public/train.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:2a23d9f1558e4268759d44a5a58662ddff4e0b757a65c49e7019e9db25203034
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size 997613
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/public/val.csv
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oid sha256:fa96f3f053a3ae913c7cd723e390bf19f86afc22192eea09094e136ce2a6eb6c
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size 124824
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/tabpfgen/adapter_report.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:34fad81b4aee6b04f03e3c6938ab63f0410425ac627a4520dad3a365127c680b
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size 324
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/tabpfgen/adapter_transforms_applied.json
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oid sha256:4f53cda18c2baa0c0354bb5f9a3ecbe5ed12ab4d8e11ba873c2f11161202b945
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syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/staged/tabpfgen/model_input_manifest.json
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| 2 |
+
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size 11620
|
syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/tabpfgen-c5-6732-20260511_061054.csv
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
|
|
|
|
|
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|
| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
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size 1018296
|
syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/tabpfgen_meta.json
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
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|
| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
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size 445
|
syntheticSuccess/c5/tabpfgen/tabpfgen-c5-20260511_061054/train_20260511_061054.log
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:e715c0d2fecc9f9973d7ea928ef8413aaa3b43bdb9f1fc1b4d213ded8540cc75
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size 595
|