code stringlengths 51 2.34k | sequence stringlengths 186 3.94k | docstring stringlengths 11 171 |
|---|---|---|
def reservations(self):
command = [SINFO, '--reservation']
output = subprocess.check_output(command, env=SINFO_ENV)
output = output.decode()
it = iter(output.splitlines())
next(it)
for line in it:
rsv = Reservation.from_sinfo(line)
yield rsv.name, ... | module function_definition identifier parameters identifier block expression_statement assignment identifier list identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier identifier expre... | get nodes of every reservations |
def handle_input(self, event):
self.update_timeval()
self.events = []
code = self._get_event_type(event)
self.handle_button(event, code)
if code == 22:
self.handle_scrollwheel(event)
else:
self.handle_relative(event)
self.handle_absolute(ev... | module function_definition identifier parameters identifier identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier list expression_statement assignment identifier call attribute identifier identifier argument_list identifi... | Process the mouse event. |
def frequencies_plot(self, xmin=0, xmax=200):
helptext =
pconfig = {
'id': 'Jellyfish_kmer_plot',
'title': 'Jellyfish: K-mer plot',
'ylab': 'Counts',
'xlab': 'k-mer frequency',
'xDecimals': False,
'xmin': xmin,
'xmax': x... | module function_definition identifier parameters identifier default_parameter identifier integer default_parameter identifier integer block expression_statement assignment identifier assignment identifier dictionary pair string string_start string_content string_end string string_start string_content string_end pair st... | Generate the qualities plot |
def with_exit_condition(self, exit_condition: Optional[bool]=True) -> 'MonitorTask':
self._exit_condition = exit_condition
return self | module function_definition identifier parameters identifier typed_default_parameter identifier type generic_type identifier type_parameter type identifier true type string string_start string_content string_end block expression_statement assignment attribute identifier identifier identifier return_statement identifier | Sets the flag indicating that the task should also run after the optimisation is ended. |
def package_version():
version_path = os.path.join(os.path.dirname(__file__), 'version.py')
version = read_version(version_path)
write_version(version_path, version)
return version | module function_definition identifier parameters block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end expression_statement ... | Get the package version via Git Tag. |
def _check_array_parms(is_array, array_size, value, element_kind,
element_name):
if value is not None:
value_is_array = isinstance(value, (list, tuple))
if not is_array and value_is_array:
raise ValueError(
_format("The is_array parameter of {0} {1!... | module function_definition identifier parameters identifier identifier identifier identifier identifier block if_statement comparison_operator identifier none block expression_statement assignment identifier call identifier argument_list identifier tuple identifier identifier if_statement boolean_operator not_operator ... | Check whether array-related parameters are ok. |
def scan_timestamp(self, tbuf):
while True:
(tusec,) = struct.unpack('>Q', tbuf)
t = tusec * 1.0e-6
if abs(t - self._last_timestamp) <= 3*24*60*60:
break
c = self.f.read(1)
if len(c) != 1:
break
tbuf = tbuf[1... | module function_definition identifier parameters identifier identifier block while_statement true block expression_statement assignment tuple_pattern identifier call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement assignment identifier binary_o... | scan forward looking in a tlog for a timestamp in a reasonable range |
def ci_macos():
run_command("brew install $PYTHON pipenv || echo \"Installed PipEnv\"")
command_string = "sudo -H $PIP install "
for element in DEPENDENCIES + REQUIREMENTS + ["-U"]:
command_string += element + " "
run_command(command_string)
run_command("sudo -H $PYTHON setup.py bdist_wheel"... | module function_definition identifier parameters block expression_statement call identifier argument_list string string_start string_content escape_sequence escape_sequence string_end expression_statement assignment identifier string string_start string_content string_end for_statement identifier binary_operator binary... | Setup Travis-CI macOS for wheel building |
async def load_all_aldb(self, clear=True):
for addr in self.plm.devices:
await self.load_device_aldb(addr, clear) | module function_definition identifier parameters identifier default_parameter identifier true block for_statement identifier attribute attribute identifier identifier identifier block expression_statement await call attribute identifier identifier argument_list identifier identifier | Read all devices ALDB. |
def seconds2str(seconds):
if seconds < 0:
return "{0:.3g}s".format(seconds)
elif math.isnan(seconds):
return "NaN"
elif math.isinf(seconds):
return "Inf"
m, s = divmod(seconds, 60)
h, m = divmod(m, 60)
if h >= 1:
return "{0:g}h {1:02g}m {2:.3g}s".format(... | module function_definition identifier parameters identifier block if_statement comparison_operator identifier integer block return_statement call attribute string string_start string_content string_end identifier argument_list identifier elif_clause call attribute identifier identifier argument_list identifier block re... | Returns string such as 1h 05m 55s. |
def packets_to_flows(self):
for packet in self.input_stream:
flow_id = flow_utils.flow_tuple(packet)
self._flows[flow_id].add_packet(packet)
for flow in list(self._flows.values()):
if flow.ready():
flow_info = flow.get_flow()
... | module function_definition identifier parameters identifier block for_statement identifier attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement call attribute subscript attribute identifier identifier identifi... | Combine packets into flows |
def _reset_server_state(self) -> None:
self.last_helo_response = None
self._last_ehlo_response = None
self.esmtp_extensions = {}
self.supports_esmtp = False
self.server_auth_methods = [] | module function_definition identifier parameters identifier type none block expression_statement assignment attribute identifier identifier none expression_statement assignment attribute identifier identifier none expression_statement assignment attribute identifier identifier dictionary expression_statement assignment... | Clear stored information about the server. |
def opener(self):
"A reusable connection manager"
if self._opener is None:
log.debug("Creating connection handler")
opener = build_opener()
if self._cookies:
log.debug("Appending cookies")
else:
log.debug("No cookies to appe... | module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end if_statement comparison_operator attribute identifier identifier none block expression_statement call attribute identifier identifier argument_list string string_start string_content stri... | A reusable connection manager |
def text(self):
texts = []
for child in self.childs:
if isinstance(child, Tag):
texts.append(child.text())
elif isinstance(child, Content):
texts.append(child.render())
else:
texts.append(child)
return " ".join(t... | module function_definition identifier parameters identifier block expression_statement assignment identifier list for_statement identifier attribute identifier identifier block if_statement call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list ... | Renders the contents inside this element, without html tags. |
def start(self):
self.update_device_info()
self.get_device_status(0)
self.hook()
self.thread = threading.Thread(target=self._run)
self.thread.start()
self.running = True | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list integer expression_statement call attribute identifier identifier argument_list expression_statement assignmen... | start running in background. |
def __Calc_HSL_to_RGB_Components(var_q, var_p, C):
if C < 0:
C += 1.0
if C > 1:
C -= 1.0
if C < (1.0 / 6.0):
return var_p + ((var_q - var_p) * 6.0 * C)
elif (1.0 / 6.0) <= C < 0.5:
return var_q
elif 0.5 <= C < (2.0 / 3.0):
return var_p + ((var_q - var_p) * 6.0... | module function_definition identifier parameters identifier identifier identifier block if_statement comparison_operator identifier integer block expression_statement augmented_assignment identifier float if_statement comparison_operator identifier integer block expression_statement augmented_assignment identifier floa... | This is used in HSL_to_RGB conversions on R, G, and B. |
def add_task(self, func, *args, **kargs):
self.tasks.put((func, args, kargs)) | module function_definition identifier parameters identifier identifier list_splat_pattern identifier dictionary_splat_pattern identifier block expression_statement call attribute attribute identifier identifier identifier argument_list tuple identifier identifier identifier | Add a task to the queue. |
def read_line(self, line):
if self.ignore:
return
for i, char in enumerate(line):
if char not in ['"', "'"]:
continue
if line[i - 1:i] == '\\':
continue
if self.single == char:
self.single = None
... | module function_definition identifier parameters identifier identifier block if_statement attribute identifier identifier block return_statement for_statement pattern_list identifier identifier call identifier argument_list identifier block if_statement comparison_operator identifier list string string_start string_con... | Read a new line |
def dump(self, data, stream=None):
yaml_text = yaml.dump(
data,
default_flow_style=False,
allow_unicode=True)
return self.dump_raw(yaml_text, stream=stream) | module function_definition identifier parameters identifier identifier default_parameter identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier false keyword_argument identifier true return_statement call attribute ident... | Encrypt data and print stdout or write to stream. |
def _query_gen(self):
return urlencode(self.__query__, safe=self.safe, querydelimiter=self.__querydelimiter__) | module function_definition identifier parameters identifier block return_statement call identifier argument_list attribute identifier identifier keyword_argument identifier attribute identifier identifier keyword_argument identifier attribute identifier identifier | Generates The String for queries |
def __get_cfg_pkgs_rpm(self):
out, err = self._syscall('rpm', None, None, '-qa', '--configfiles',
'--queryformat', '%{name}-%{version}-%{release}\\n')
data = dict()
pkg_name = None
pkg_configs = []
out = salt.utils.stringutils.to_str(out)
... | module function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list string string_start string_content string_end none none string string_start string_content string_end string string_start string_content... | Get packages with configuration files on RPM systems. |
def latexpdf():
rc = latex()
print('Running LaTeX files through pdflatex...')
builddir = os.path.join(BUILDDIR, 'latex')
subprocess.call(['make', '-C', builddir, 'all-pdf'])
print('pdflatex finished; the PDF files are in {}.'.format(builddir)) | module function_definition identifier parameters block expression_statement assignment identifier call identifier argument_list expression_statement call identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute attribute identifier identifier ident... | make LaTeX files and run them through pdflatex |
def all_files_in_directory(path):
file_list = []
for dirname, dirnames, filenames in os.walk(path):
for filename in filenames:
file_list.append(os.path.join(dirname, filename))
return file_list | module function_definition identifier parameters identifier block expression_statement assignment identifier list for_statement pattern_list identifier identifier identifier call attribute identifier identifier argument_list identifier block for_statement identifier identifier block expression_statement call attribute ... | Recursively ist all files under a directory |
def rename_abiext(self, inext, outext):
infile = self.has_abiext(inext)
if not infile:
raise RuntimeError('no file with extension %s in %s' % (inext, self))
for i in range(len(infile) - 1, -1, -1):
if infile[i] == '_':
break
else:
raise... | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement not_operator identifier block raise_statement call identifier argument_list binary_operator string string_start st... | Rename the Abinit file with extension inext with the new extension outext |
def complain(error):
if callable(error):
if DEVELOP:
raise error()
elif DEVELOP:
raise error
else:
logger.warn_err(error) | module function_definition identifier parameters identifier block if_statement call identifier argument_list identifier block if_statement identifier block raise_statement call identifier argument_list elif_clause identifier block raise_statement identifier else_clause block expression_statement call attribute identifi... | Raises in develop; warns in release. |
def max_tot_value(self, value):
self._max_tot_value = value
self.interpreter.set_max_tot(self._max_tot_value)
self.histogram.set_max_tot(self._max_tot_value)
self.clusterizer.set_max_hit_charge(self._max_tot_value) | module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement call attribute attribu... | Set maximum ToT value that is considered to be a hit |
def LE16(value, min_value=None, max_value=None, fuzzable=True, name=None, full_range=False):
return UInt16(value, min_value=min_value, max_value=max_value, encoder=ENC_INT_LE, fuzzable=fuzzable, name=name, full_range=full_range) | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none default_parameter identifier true default_parameter identifier none default_parameter identifier false block return_statement call identifier argument_list identifier keyword_argument identifi... | 16-bit field, Little endian encoded |
def toPairTreePath(name):
sName = sanitizeString(name)
chunks = []
for x in range(0, len(sName)):
if x % 2:
continue
if (len(sName) - 1) == x:
chunk = sName[x]
else:
chunk = sName[x: x + 2]
chunks.append(chunk)
return os.sep.join(chunks... | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier list for_statement identifier call identifier argument_list integer call identifier argument_list identifier block if_statement... | Cleans a string, and then splits it into a pairtree path. |
def calcperc(b, perc=(0.1,99.9)):
b = checkma(b)
if b.count() > 0:
low = np.percentile(b.compressed(), perc[0])
high = np.percentile(b.compressed(), perc[1])
else:
low = 0
high = 0
return low, high | module function_definition identifier parameters identifier default_parameter identifier tuple float float block expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator call attribute identifier identifier argument_list integer block expression_statement assi... | Calculate values at specified percentiles |
def restore_directory_state(self, fname):
root = osp.normpath(to_text_string(fname))
if not osp.exists(root):
return
for basename in os.listdir(root):
path = osp.normpath(osp.join(root, basename))
if osp.isdir(path) and path in self.__expanded_state:
... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list call identifier argument_list identifier if_statement not_operator call attribute identifier identifier argument_list identifier block return_stateme... | Restore directory expanded state |
def ensure_sink(self):
topic_info = self.pubsub.ensure_topic()
scope, sink_path, sink_info = self.get_sink(topic_info)
client = self.session.client('logging', 'v2', '%s.sinks' % scope)
try:
sink = client.execute_command('get', {'sinkName': sink_path})
except HttpError... | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment pattern_list identifier identifier identifier call attribute identifier identifier argument_list identifier... | Ensure the log sink and its pub sub topic exist. |
def handle_initialize(self, data):
self.tuner.update_search_space(data)
send(CommandType.Initialized, '')
return True | module function_definition identifier parameters identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier expression_statement call identifier argument_list attribute identifier identifier string string_start string_end return_statement true | data is search space |
def rows(self):
tvm = self.section.doc.decl_terms.get(self.qualified_term, {}).get('termvaluename', '@value')
assert tvm
properties = {tvm: self.value}
for c in self.children:
if c.is_terminal:
if c.record_term_lc:
properties[c.record_term_... | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute call attribute attribute attribute attribute identifier identifier identifier identifier identifier argument_list attribute identifier identifier dictionary identifier argument_list string string_... | Yield rows for the term, for writing terms to a CSV file. |
def from_dict(cls, data):
data = dict(data)
cause = data.get('cause')
if cause is not None:
data['cause'] = cls.from_dict(cause)
return cls(**data) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end if_statement compar... | Converts this from a dictionary to a object. |
def _command_callback(self, message):
payload = message['payload']
if message['$'] == 'before':
self._commands.append({'level': self._depth,
'payload': payload,
'logs': []})
self._depth += 1
else:
... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier subscript identifier string string_start string_content string_end if_statement comparison_operator subscript identifier string string_start string_content string_end string string_start string_conten... | The callback subscribed to the broker |
def submitted_projects(raw_df):
df = raw_df.astype({'PRONAC': str, 'CgcCpf': str})
submitted_projects = df.groupby('CgcCpf')[
'PRONAC'
].agg(['unique', 'nunique'])
submitted_projects.columns = ['pronac_list', 'num_pronacs']
return submitted_projects | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list dictionary pair string string_start string_content string_end identifier pair string string_start string_content string_end identifier expression_statement assi... | Return all submitted projects. |
def write_file(self, html, outfile):
try:
with open(outfile, 'wt') as file:
file.write(html)
except (IOError, OSError) as e:
err_exit('Error writing %s: %s' % (outfile, e.strerror or e)) | module function_definition identifier parameters identifier identifier identifier block try_statement block with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call attribute identi... | Write an HTML string to a file. |
def checkversion(version, REFVERSION=FOLIAVERSION):
try:
for refversion, docversion in zip([int(x) for x in REFVERSION.split('.')], [int(x) for x in version.split('.')]):
if docversion > refversion:
return 1
elif docversion < refversion:
return -1
... | module function_definition identifier parameters identifier default_parameter identifier identifier block try_statement block for_statement pattern_list identifier identifier call identifier argument_list list_comprehension call identifier argument_list identifier for_in_clause identifier call attribute identifier iden... | Checks FoLiA version, returns 1 if the document is newer than the library, -1 if it is older, 0 if it is equal |
def topics_count(self):
return self.obj.direct_topics_count + sum(n.topics_count for n in self.children) | module function_definition identifier parameters identifier block return_statement binary_operator attribute attribute identifier identifier identifier call identifier generator_expression attribute identifier identifier for_in_clause identifier attribute identifier identifier | Returns the number of topics associated with the current node and its descendants. |
def new_lineup(self, name, location, device, _type, postalCode, _id):
if self.__v_lineup:
print("[Lineup: %s, %s, %s, %s, %s, %s]" %
(name, location, device, _type, postalCode, _id)) | module function_definition identifier parameters identifier identifier identifier identifier identifier identifier identifier block if_statement attribute identifier identifier block expression_statement call identifier argument_list binary_operator string string_start string_content string_end tuple identifier identif... | Callback run for each new lineup |
def patch(self, delta):
"Applies remote delta to local file."
with (tempfile.NamedTemporaryFile(prefix='.sync',
suffix=os.path.basename(self.path),
dir=os.path.dirname(self.path), delete=False)) as output:
try:
with open(self.path, 'rb') as referen... | module function_definition identifier parameters identifier identifier block expression_statement string string_start string_content string_end with_statement with_clause with_item as_pattern parenthesized_expression call attribute identifier identifier argument_list keyword_argument identifier string string_start stri... | Applies remote delta to local file. |
def _get_base_state(self):
base_app_inst = self.stateless_app.as_dash_app().as_dash_instance()
base_resp = base_app_inst.locate_endpoint_function('dash-layout')()
base_obj = json.loads(base_resp.data.decode('utf-8'))
obj = {}
base_app_inst.walk_tree_and_extract(base_obj, obj)
... | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute call attribute attribute identifier identifier identifier argument_list identifier argument_list expression_statement assignment identifier call call attribute identifier identifier argument_list ... | Get the base state of the object, as defined by the app.layout code, as a python dict |
def fetch_check(self, master):
if self.param_period.trigger():
if master is None:
return
if len(self.mav_param_set) == 0:
master.param_fetch_all()
elif self.mav_param_count != 0 and len(self.mav_param_set) != self.mav_param_count:
... | module function_definition identifier parameters identifier identifier block if_statement call attribute attribute identifier identifier identifier argument_list block if_statement comparison_operator identifier none block return_statement if_statement comparison_operator call identifier argument_list attribute identif... | check for missing parameters periodically |
def prepareDiff(self):
self.streamForDiff = NativeStringIO()
self.linter.reporter.set_output(self.streamForDiff) | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier call identifier argument_list expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list attribute identifier identifier | Prepare to run the checker and get diff results. |
def make_argument_subquery(arg):
return Subquery.create(arg) if isinstance(arg, (GroupBy, Projection)) or arg.restriction else arg | module function_definition identifier parameters identifier block return_statement conditional_expression call attribute identifier identifier argument_list identifier boolean_operator call identifier argument_list identifier tuple identifier identifier attribute identifier identifier identifier | Decide when a Join argument needs to be wrapped in a subquery |
def mouseMove(self, PSRML=None, dy=0):
if PSRML is None:
PSRML = self._lastMatch or self
if isinstance(PSRML, Pattern):
move_location = self.find(PSRML).getTarget()
elif isinstance(PSRML, basestring):
move_location = self.find(PSRML).getTarget()
elif i... | module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier integer block if_statement comparison_operator identifier none block expression_statement assignment identifier boolean_operator attribute identifier identifier identifier if_statement call identif... | Low-level mouse actions |
def _createLink(self, linkResult, replaceParamFile):
link = None
if linkResult['type'] == 'XSEC':
link = self._createCrossSection(linkResult, replaceParamFile)
elif linkResult['type'] == 'STRUCTURE':
link = self._createStructure(linkResult, replaceParamFile)
elif ... | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier none if_statement comparison_operator subscript identifier string string_start string_content string_end string string_start string_content string_end block expression_statement assignment ... | Create GSSHAPY Link Object Method |
def list(self):
return [self._pos3d.x, self._pos3d.y, self._pos3d.z] | module function_definition identifier parameters identifier block return_statement list attribute attribute identifier identifier identifier attribute attribute identifier identifier identifier attribute attribute identifier identifier identifier | position in 3d space |
def _get_variant_silent(parser, variant):
prev_log = config.LOG_NOT_FOUND
config.LOG_NOT_FOUND = False
results = parser.get_variant_genotypes(variant)
config.LOG_NOT_FOUND = prev_log
return results | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment attribute identifier identifier false expression_statement assignment identifier call attribute identifier identifier argument_list iden... | Gets a variant from the parser while disabling logging. |
def read_txt_file(fname):
encodings = ['utf-8-sig', 'cp1252']
with open(fname, 'rb') as f:
content = bytes(f.read())
for i in encodings:
try:
result = content.decode(i)
if six.PY2:
result = result.encode('utf-8')
return result
excep... | module function_definition identifier parameters identifier block expression_statement assignment identifier list string string_start string_content string_end string string_start string_content string_end with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start strin... | Reads a txt file, regardless of its encoding |
def setup_function(self):
log.options.LogOptions.set_stderr_log_level('google:INFO')
if app.get_options().debug:
log.options.LogOptions.set_stderr_log_level('google:DEBUG')
if not app.get_options().build_root:
app.set_option('build_root', os.path.join(
app... | module function_definition identifier parameters identifier block expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list string string_start string_content string_end if_statement attribute call attribute identifier identifier argument_list identifier block exp... | Runs prior to the global main function. |
def create_module(self, spec):
mod = super(NamespaceLoader2, self).create_module(spec)
return mod | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute call identifier argument_list identifier identifier identifier argument_list identifier return_statement identifier | Improve python2 semantics for module creation. |
def _handle_external_link(self, token):
brackets, url = token.brackets, None
self._push()
while self._tokens:
token = self._tokens.pop()
if isinstance(token, tokens.ExternalLinkSeparator):
url = self._pop()
self._push()
elif isi... | module function_definition identifier parameters identifier identifier block expression_statement assignment pattern_list identifier identifier expression_list attribute identifier identifier none expression_statement call attribute identifier identifier argument_list while_statement attribute identifier identifier blo... | Handle when an external link is at the head of the tokens. |
def _as_reference_point(self) -> np.ndarray:
ref_val = []
for fn, f in self._classification.items():
if f[0] == "<":
ref_val.append(self._method.problem.ideal[fn])
elif f[0] == "<>":
ref_val.append(self._method.problem.nadir[fn])
else:
... | module function_definition identifier parameters identifier type attribute identifier identifier block expression_statement assignment identifier list for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block if_statement comparison_operator subscript... | Return classification information as reference point |
def show_gateway_device(self, gateway_device_id, **_params):
return self.get(self.gateway_device_path % gateway_device_id,
params=_params) | module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block return_statement call attribute identifier identifier argument_list binary_operator attribute identifier identifier identifier keyword_argument identifier identifier | Fetch a gateway device. |
def _consume(self):
self._stream_offset += self._buff_i - self._buf_checkpoint
self._buf_checkpoint = self._buff_i | module function_definition identifier parameters identifier block expression_statement augmented_assignment attribute identifier identifier binary_operator attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier attribute identifier identifier | Gets rid of the used parts of the buffer. |
def getComicData(self, comic):
if comic not in self.data:
if os.path.exists(self.jsonFn(comic)):
with codecs.open(self.jsonFn(comic), 'r', self.encoding) as f:
self.data[comic] = json.load(f)
else:
self.data[comic] = {'pages':{}}
... | module function_definition identifier parameters identifier identifier block if_statement comparison_operator identifier attribute identifier identifier block if_statement call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list identifier block with_sta... | Return dictionary with comic info. |
def find(command, on):
output_lines = parse_man_page(command, on)
click.echo(''.join(output_lines)) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list identifier identifier expression_statement call attribute identifier identifier argument_list call attribute string string_start string_end identifier argument_list ident... | Find the command usage. |
def search(self):
"redirect to bookmark search"
form = forms.HomeForm()
bbm_filter = bs_filters.BookmarkBukuFilter(
all_keywords=False, deep=form.deep.data, regex=form.regex.data)
op_text = bbm_filter.operation()
values_combi = sorted(itertools.product([True, False], ... | module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list... | redirect to bookmark search |
def sign_file(self, filepath):
if not GPG_PRESENT:
return
signed_data = sign(filepath)
signature = signed_data.data
if signature is None or not signature:
statustext = _('Error signing file. ') + signed_data.stderr
try:
post_command_eve... | module function_definition identifier parameters identifier identifier block if_statement not_operator identifier block return_statement expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier attribute identifier identifier if_statement boolean_ope... | Signs file if possible |
def _select_vs(v, p):
if v >= 120.:
return 60, 120, inf
elif v >= 60.:
return 40, 60, 120
elif v >= 40.:
return 30, 40, 60
elif v >= 30.:
return 24, 30, 40
elif v >= 24.:
return 20, 24, 30
elif v >= 19.5:
return 19, 20, 24
if p >= .9:
i... | module function_definition identifier parameters identifier identifier block if_statement comparison_operator identifier float block return_statement expression_list integer integer identifier elif_clause comparison_operator identifier float block return_statement expression_list integer integer integer elif_clause com... | returns the points to use for interpolating v |
async def become(self, layer_type: Type[L], request: 'Request') -> L:
raise ValueError('Cannot become "{}"'.format(layer_type.__name__)) | module function_definition identifier parameters identifier typed_parameter identifier type generic_type identifier type_parameter type identifier typed_parameter identifier type string string_start string_content string_end type identifier block raise_statement call identifier argument_list call attribute string strin... | Transform this layer into another layer type |
def list_attachments(fullname):
parent, filename = os.path.split(fullname)
filename_without_ext, ext = os.path.splitext(filename)
attachments = []
for found_filename in os.listdir(parent):
found_filename_without_ext, _ = os.path.splitext(found_filename)
if filename_without_ext == found_f... | module function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment pattern_list identifier identifier call attribute attribute identifier i... | List attachment for the specified fullname. |
def shutdown_all(self):
self._lock.acquire()
try:
for context in list(self._key_by_context):
self._shutdown_unlocked(context)
finally:
self._lock.release() | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list try_statement block for_statement identifier call identifier argument_list attribute identifier identifier block expression_statement call attribute identifier i... | For testing use, arrange for all connections to be shut down. |
def cd(dest):
origin = os.getcwd()
try:
os.chdir(dest)
yield dest
finally:
os.chdir(origin) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list try_statement block expression_statement call attribute identifier identifier argument_list identifier expression_statement yield identifier finally_clause bloc... | Temporarily cd into a directory |
def check(self):
if self.lastrun + self.interval < time.time():
return True
else:
return False | module function_definition identifier parameters identifier block if_statement comparison_operator binary_operator attribute identifier identifier attribute identifier identifier call attribute identifier identifier argument_list block return_statement true else_clause block return_statement false | Returns True if `interval` seconds have passed since it last ran |
def _send_merge_commands(self, config, file_config):
if self.loaded is False:
if self._save_backup() is False:
raise MergeConfigException('Error while storing backup '
'config.')
if self.ssh_connection is False:
self._ope... | module function_definition identifier parameters identifier identifier identifier block if_statement comparison_operator attribute identifier identifier false block if_statement comparison_operator call attribute identifier identifier argument_list false block raise_statement call identifier argument_list concatenated_... | Netmiko is being used to push set commands. |
def uuid_object(title="Reference", description="Select an object", default=None, display=True):
uuid = {
'pattern': '^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{'
'4}-['
'a-fA-F0-9]{4}-[a-fA-F0-9]{12}$',
'type': 'string',
'title': title,
'descript... | module function_definition identifier parameters default_parameter identifier string string_start string_content string_end default_parameter identifier string string_start string_content string_end default_parameter identifier none default_parameter identifier true block expression_statement assignment identifier dict... | Generates a regular expression controlled UUID field |
def _DeleteClientActionRequest(self, to_delete, cursor=None):
query = "DELETE FROM client_action_requests WHERE "
conditions = []
args = []
for client_id, flow_id, request_id in to_delete:
conditions.append("(client_id=%s AND flow_id=%s AND request_id=%s)")
args.append(db_utils.ClientIDToInt... | module function_definition identifier parameters identifier identifier default_parameter identifier none block expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier list expression_statement assignment identifier list for_statement pattern_li... | Builds deletes for client messages. |
def redraw_current_line(self):
if self.no_streams:
return
row = self.pads[self.current_pad].getyx()[0]
s = self.filtered_streams[row]
pad = self.pads['streams']
pad.move(row, 0)
pad.clrtoeol()
pad.addstr(row, 0, self.format_stream_line(s), curses.A_REV... | module function_definition identifier parameters identifier block if_statement attribute identifier identifier block return_statement expression_statement assignment identifier subscript call attribute subscript attribute identifier identifier attribute identifier identifier identifier argument_list integer expression_... | Redraw the highlighted line |
def _get_lsun(directory, category, split_name):
generator_utils.maybe_download(directory,
_LSUN_DATA_FILENAME % (category, split_name),
_LSUN_URL % (category, split_name)) | module function_definition identifier parameters identifier identifier identifier block expression_statement call attribute identifier identifier argument_list identifier binary_operator identifier tuple identifier identifier binary_operator identifier tuple identifier identifier | Downloads all lsun files to directory unless they are there. |
def item(self, infohash, prefetch=None, cache=False):
return next(self.items(infohash, prefetch, cache)) | module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier false block return_statement call identifier argument_list call attribute identifier identifier argument_list identifier identifier identifier | Fetch a single item by its info hash. |
def information_title_header_element(feature, parent):
_ = feature, parent
header = information_title_header['string_format']
return header.capitalize() | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier expression_list identifier identifier expression_statement assignment identifier subscript identifier string string_start string_content string_end return_statement call attribute identifier identifie... | Retrieve information title header string from definitions. |
def runSearchReadGroupSets(self, request):
return self.runSearchRequest(
request, protocol.SearchReadGroupSetsRequest,
protocol.SearchReadGroupSetsResponse,
self.readGroupSetsGenerator) | module function_definition identifier parameters identifier identifier block return_statement call attribute identifier identifier argument_list identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier | Runs the specified SearchReadGroupSetsRequest. |
def as_list(callable):
@wraps(callable)
def wrapper(value_iter):
return [callable(value) for value in value_iter]
return wrapper | module function_definition identifier parameters identifier block decorated_definition decorator call identifier argument_list identifier function_definition identifier parameters identifier block return_statement list_comprehension call identifier argument_list identifier for_in_clause identifier identifier return_sta... | Convert a scalar validator in a list validator |
def _fill_topology_cfg(self, topo_dict):
cfg_dict = {}
if topo_dict.bond_member_ports is not None:
cfg_dict.update({'bond_member_ports':
topo_dict.bond_member_ports})
if topo_dict.bond_interface is not None:
cfg_dict.update({'bond_interface':
... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary if_statement comparison_operator attribute identifier identifier none block expression_statement call attribute identifier identifier argument_list dictionary pair string string_start strin... | Fills the extra configurations in the topology. |
def download_bundle_view(self, request, pk):
return self._download_response(request, pk, bundle=True) | module function_definition identifier parameters identifier identifier identifier block return_statement call attribute identifier identifier argument_list identifier identifier keyword_argument identifier true | A view that allows the user to download a certificate bundle in PEM format. |
def load_project_flag_list_file(self, project_exceptions, project):
if self.loaded:
return
exception_file = None
for item in project_exceptions:
if project in item:
exception_file = item.get(project)
if exception_file is not None:
try:
... | module function_definition identifier parameters identifier identifier identifier block if_statement attribute identifier identifier block return_statement expression_statement assignment identifier none for_statement identifier identifier block if_statement comparison_operator identifier identifier block expression_st... | Loads project specific lists |
def on_click(self, event):
DesktopNotification(
title=event.title,
body="{} until {}!".format(event.time_remaining, event.title),
icon='dialog-information',
urgency=1,
timeout=0,
).display() | module function_definition identifier parameters identifier identifier block expression_statement call attribute call identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier call attribute string string_start string_content string_end identifier argument_list att... | Override this method to do more interesting things with the event. |
def output_xml(data, code, headers=None):
resp = make_response(dumps({'response' :data}), code)
resp.headers.extend(headers or {})
return resp | module function_definition identifier parameters identifier identifier default_parameter identifier none block expression_statement assignment identifier call identifier argument_list call identifier argument_list dictionary pair string string_start string_content string_end identifier identifier expression_statement c... | Makes a Flask response with a XML encoded body |
def visit_FunctionDef(self, node):
if (len(node.body) == 1 and
isinstance(node.body[0], (ast.Call, ast.Return))):
ids = self.gather(Identifiers, node.body[0])
if node.name not in ids:
self.result[node.name] = copy.deepcopy(node) | module function_definition identifier parameters identifier identifier block if_statement parenthesized_expression boolean_operator comparison_operator call identifier argument_list attribute identifier identifier integer call identifier argument_list subscript attribute identifier identifier integer tuple attribute id... | Determine this function definition can be inlined. |
def createHeadingPointer(self):
self.headingTri = patches.RegularPolygon((0.0,0.80),3,0.05,color='k',zorder=4)
self.axes.add_patch(self.headingTri)
self.headingText = self.axes.text(0.0,0.675,'0',color='k',size=self.fontSize,horizontalalignment='center',verticalalignment='center',zorder=4) | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list tuple float float integer float keyword_argument identifier string string_start string_content string_end keyword_argument identifier integ... | Creates the pointer for the current heading. |
def read(self):
"Read and interpret data from the daemon."
status = gpscommon.read(self)
if status <= 0:
return status
if self.response.startswith("{") and self.response.endswith("}\r\n"):
self.unpack(self.response)
self.__oldstyle_shim()
s... | module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator identifier integer block return_statement identif... | Read and interpret data from the daemon. |
def runCommandReturnOutput(cmd):
splits = shlex.split(cmd)
proc = subprocess.Popen(
splits, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
stdout, stderr = proc.communicate()
if proc.returncode != 0:
raise subprocess.CalledProcessError(stdout, stderr)
return stdout, stderr | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier attribute identi... | Runs a shell command and return the stdout and stderr |
def autodoc_module(module):
doc = getattr(module, '__doc__')
if doc is None:
doc = ''
members = []
for name, member in inspect.getmembers(module):
if ((not name.startswith('_')) and
(inspect.getmodule(member) is module)):
members.append((name, member))
mem... | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier string string_start string_content string_end if_statement comparison_operator identifier none block expression_statement assignment identifier string string_start string... | Add a short summary of all implemented members to a modules docstring. |
def _fix_uncontracted(basis):
for el in basis['elements'].values():
if 'electron_shells' not in el:
continue
for sh in el['electron_shells']:
if len(sh['coefficients']) == 1 and len(sh['coefficients'][0]) == 1:
sh['coefficients'][0][0] = '1.0000000'
... | module function_definition identifier parameters identifier block for_statement identifier call attribute subscript identifier string string_start string_content string_end identifier argument_list block if_statement comparison_operator string string_start string_content string_end identifier block continue_statement f... | Forces the contraction coefficient of uncontracted shells to 1.0 |
def path_only_contains_dirs(self, path):
pathlistdir = os.listdir(path)
if pathlistdir == []:
return True
if any(os.path.isfile(os.path.join(path, i)) for i in pathlistdir):
return False
return all(self.path_only_contains_dirs(os.path.join(path, i)) for i in pathl... | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator identifier list block return_statement true if_statement call identifier generator_expression call attrib... | Return boolean on whether a path only contains directories. |
def backup(self):
try:
self.backup_df = self.df.copy()
except Exception as e:
self.err(e, "Can not backup data")
return
self.ok("Dataframe backed up") | module function_definition identifier parameters identifier block try_statement block expression_statement assignment attribute identifier identifier call attribute attribute identifier identifier identifier argument_list except_clause as_pattern identifier as_pattern_target identifier block expression_statement call a... | Backup the main dataframe |
def pin_command(self):
parts = [
'pip-compile',
'--no-header',
'--verbose',
'--rebuild',
'--no-index',
'--output-file', self.outfile,
self.infile,
]
if OPTIONS['upgrade']:
parts.insert(3, '--upgrade')... | module function_definition identifier parameters identifier block expression_statement assignment identifier list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end string string_start st... | Compose pip-compile shell command |
def publishToRoom(self, roomId, name, data, userList=None):
if userList is None:
userList = self.getRoom(roomId)
logging.debug("%s: broadcasting (name: %s, data: %s, number of users: %s)" % (self._gcls(), name, data, len(userList)))
self.broadcast(userList, {
"name": name... | module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier none block if_statement comparison_operator identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement call a... | Publish to given room data submitted |
def remove_key(pki_dir, id_):
key = os.path.join(pki_dir, 'minions', id_)
if os.path.isfile(key):
os.remove(key)
log.debug('Deleted \'%s\'', key) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end identifier if_statement call attribute attribute identifier identifier ... | This method removes a specified key from the accepted keys dir |
def deploy_media():
if not env.MEDIA_URL or not env.MEDIA_ROOT or 'http://' in env.MEDIA_URL: return
local_dir = env.MEDIA_ROOT
remote_dir = '/'.join([deployment_root(),'public'])
media_url = env.MEDIA_URL[1:]
if media_url:
remote_dir = '/'.join([remote_dir,media_url])
if env.verbosity:... | module function_definition identifier parameters block if_statement boolean_operator boolean_operator not_operator attribute identifier identifier not_operator attribute identifier identifier comparison_operator string string_start string_content string_end attribute identifier identifier block return_statement express... | Deploy MEDIA_ROOT unversioned on host |
def sample(name, reads_in_tuple):
if name in [sample_x.get_name() for sample_x in __SAMPLES__]:
rnftools.utils.error(
"Multiple samples have the same name. Each sample must have a unique name.",
program="RNFtools",
subprogram="MIShmash",
exception=ValueError,
... | module function_definition identifier parameters identifier identifier block if_statement comparison_operator identifier list_comprehension call attribute identifier identifier argument_list for_in_clause identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument... | Create a new sample. |
def from_dataframe(cls, name, df, indices, primary_key=None):
column_types = []
nullable = set()
for column_name in df.columns:
values = df[column_name]
if values.isnull().any():
nullable.add(column_name)
column_db_type = db_type(values.dtype)
... | module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier none block expression_statement assignment identifier list expression_statement assignment identifier call identifier argument_list for_statement identifier attribute identifier identifier block exp... | Infer table metadata from a DataFrame |
def Validate(self):
if self.type not in filters.Filter.classes:
raise DefinitionError("Undefined filter type %s" % self.type)
self._filter.Validate(self.expression)
Validate(self.hint, "Filter has invalid hint") | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier attribute attribute identifier identifier identifier block raise_statement call identifier argument_list binary_operator string string_start string_content string_end attribute identifier i... | The filter exists, and has valid filter and hint expressions. |
def main(argv=None):
from intake.cli.bootstrap import main as _main
return _main('Intake Catalog CLI', subcommands.all, argv or sys.argv) | module function_definition identifier parameters default_parameter identifier none block import_from_statement dotted_name identifier identifier identifier aliased_import dotted_name identifier identifier return_statement call identifier argument_list string string_start string_content string_end attribute identifier i... | Execute the "intake" command line program. |
def ping(self) -> None:
if self.db is None or self.db_pythonlib not in [PYTHONLIB_MYSQLDB,
PYTHONLIB_PYMYSQL]:
return
try:
self.db.ping(True)
except mysql.OperationalError:
self.db = None
self... | module function_definition identifier parameters identifier type none block if_statement boolean_operator comparison_operator attribute identifier identifier none comparison_operator attribute identifier identifier list identifier identifier block return_statement try_statement block expression_statement call attribute... | Pings a database connection, reconnecting if necessary. |
def store(self, secrets, job):
for j in job:
if j in secrets:
job[j] = self.add(job[j]) | module function_definition identifier parameters identifier identifier identifier block for_statement identifier identifier block if_statement comparison_operator identifier identifier block expression_statement assignment subscript identifier identifier call attribute identifier identifier argument_list subscript iden... | Sanitize the job object of any of the given secrets. |
def print_summary(self):
self.tp = len(self.matched_ref_inds)
self.fp = self.n_test - self.tp
self.fn = self.n_ref - self.tp
self.specificity = self.tp / self.n_ref
self.positive_predictivity = self.tp / self.n_test
self.false_positive_rate = self.fp / self.n_test
... | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier binary_operator attribute identifier identifier attribute identi... | Print summary metrics of the annotation comparisons. |
def response(self, msgid, response):
self.requests[msgid].callback(response)
del self.requests[msgid] | module function_definition identifier parameters identifier identifier identifier block expression_statement call attribute subscript attribute identifier identifier identifier identifier argument_list identifier delete_statement subscript attribute identifier identifier identifier | Handle a response message. |
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