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def just_log(*texts, sep = ""): if config.silent: return text = _color_sep + "default" + _color_sep2 + sep.join(texts) array = text.split(_color_sep) for part in array: parts = part.split(_color_sep2, 1) if len(parts) != 2 or not parts[1]: continue if not config.color: print(parts[1], end='') else: ...
module function_definition identifier parameters list_splat_pattern identifier default_parameter identifier string string_start string_end block if_statement attribute identifier identifier block return_statement expression_statement assignment identifier binary_operator binary_operator binary_operator identifier strin...
Log a text without adding the current time.
def remove_nesting(dom, tag_name): for node in dom.getElementsByTagName(tag_name): for ancestor in ancestors(node): if ancestor is node: continue if ancestor is dom.documentElement: break if ancestor.tagName == tag_name: unw...
module function_definition identifier parameters identifier identifier block for_statement identifier call attribute identifier identifier argument_list identifier block for_statement identifier call identifier argument_list identifier block if_statement comparison_operator identifier identifier block continue_statemen...
Unwrap items in the node list that have ancestors with the same tag.
def height(poly): num = len(poly) - 1 if abs(poly[num][2] - poly[0][2]) > abs(poly[1][2] - poly[0][2]): return dist(poly[num], poly[0]) elif abs(poly[num][2] - poly[0][2]) < abs(poly[1][2] - poly[0][2]): return dist(poly[1], poly[0]) else: return min(dist(poly[num], poly[0]), dis...
module function_definition identifier parameters identifier block expression_statement assignment identifier binary_operator call identifier argument_list identifier integer if_statement comparison_operator call identifier argument_list binary_operator subscript subscript identifier identifier integer subscript subscri...
Height of a polygon poly
def clean_email(self): email = self.cleaned_data.get("email") qs = User.objects.exclude(id=self.instance.id).filter(email=email) if len(qs) == 0: return email raise forms.ValidationError( ugettext("This email is already registered"))
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute call attribute attribute identifier...
Ensure the email address is not already registered.
def __init_chunked_upload(self): headers = { 'x-ton-content-type': self.content_type, 'x-ton-content-length': str(self._file_size), 'x-ton-expires': http_time(self.options.get('x-ton-expires', self._DEFAULT_EXPIRE)), 'content-length': str(0), 'content-...
module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary pair string string_start string_content string_end attribute identifier identifier pair string string_start string_content string_end call identifier argument_list attribute identifier identifier pair...
Initialization for a multi-chunk upload.
def guess_path_encoding(file_path, default=DEFAULT_ENCODING): with io.open(file_path, 'rb') as fh: return guess_file_encoding(fh, default=default)
module function_definition identifier parameters identifier default_parameter identifier identifier block with_statement with_clause with_item as_pattern call attribute identifier identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block return_statement call i...
Wrapper to open that damn file for you, lazy bastard.
def exit(self, signal=None, frame=None): self.input_channel.close() self.client_queue.close() self.connection.close() log.info("Worker exiting") sys.exit(0)
module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none block expression_statement call attribute attribute identifier identifier identifier argument_list expression_statement call attribute attribute identifier identifier identifier argument_list ...
Properly close the AMQP connections
def execute(self, **kwargs): headers = self.header.copy() headers['soapaction'] = '%s data = self.envelope.strip() % self._body_builder(kwargs) url = 'http://%s:%s%s' % (self.address, self.port, self.control_url) auth = None if self.password: auth=HTTPDigestAu...
module function_definition identifier parameters identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment subscript identifier string string_start string_content string_end bina...
Calls the FritzBox action and returns a dictionary with the arguments.
def sendgmail(self, subject, recipients, plaintext, htmltext=None, cc=None, debug=False, useMIMEMultipart=True, gmail_account = 'kortemmelab@gmail.com', pw_filepath = None): smtpserver = smtplib.SMTP("smtp.gmail.com", 587) smtpserver.ehlo() smtpserver.starttls() smtpserver.ehlo g...
module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier none default_parameter identifier none default_parameter identifier false default_parameter identifier true default_parameter identifier string string_start string_content string_end default_paramet...
For this function to work, the password for the gmail user must be colocated with this file or passed in.
def value_loss(self, model, observations, discounted_rewards): value_outputs = model.value(observations) value_loss = 0.5 * F.mse_loss(value_outputs, discounted_rewards) return value_loss
module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier binary_operator float call attribute identifier identifier argument_list ...
Loss of value estimator
def substring_search(query, list_of_strings, limit_results=DEFAULT_LIMIT): matching = [] query_words = query.split(' ') query_words.sort(key=len, reverse=True) counter = 0 for s in list_of_strings: target_words = s.split(' ') if(anyword_substring_search(target_words, query_words)): ...
module function_definition identifier parameters identifier identifier default_parameter identifier identifier block expression_statement assignment identifier list expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_stat...
main function to call for searching
def palindromic_substrings_iter(s): if not s: yield [] return for i in range(len(s), 0, -1): sub = s[:i] if sub == sub[::-1]: for rest in palindromic_substrings_iter(s[i:]): yield [sub] + rest
module function_definition identifier parameters identifier block if_statement not_operator identifier block expression_statement yield list return_statement for_statement identifier call identifier argument_list call identifier argument_list identifier integer unary_operator integer block expression_statement assignme...
A slightly more Pythonic approach with a recursive generator
def copy(self): missing = object() result = object.__new__(self.__class__) for name in self.__slots__: val = getattr(self, name, missing) if val is not missing: setattr(result, name, val) return result
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier for_statement identifier attribute identifier identifie...
Create a flat copy of the dict.
def recentEvents(self): return Event.objects.filter( Q(pk__in=self.individualEvents.values_list('pk',flat=True)) | Q(session__in=self.eventSessions.all()) | Q(publicevent__category__in=self.eventCategories.all()) | Q(series__category__in=self.seriesCategories.all(...
module function_definition identifier parameters identifier block return_statement call attribute call attribute attribute identifier identifier identifier argument_list binary_operator binary_operator binary_operator call identifier argument_list keyword_argument identifier call attribute attribute identifier identifi...
Get the set of recent and upcoming events to which this list applies.
def gethash(compiled): lines = compiled.splitlines() if len(lines) < 3 or not lines[2].startswith(hash_prefix): return None else: return lines[2][len(hash_prefix):]
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement boolean_operator comparison_operator call identifier argument_list identifier integer not_operator call attribute subscript identifier integer iden...
Retrieve a hash from a header.
def output_image(gandi, image, datacenters, output_keys, justify=14, warn_deprecated=True): for key in output_keys: if key in image: if (key == 'label' and image['visibility'] == 'deprecated' and warn_deprecated): image[key] = '%s /!\ DEPRECAT...
module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier integer default_parameter identifier true block for_statement identifier identifier block if_statement comparison_operator identifier identifier block if_statement parenthesized_expression boolean_o...
Helper to output a disk image.
def _ref_bus_angle_constraint(self, buses, Va, xmin, xmax): refs = [bus._i for bus in buses if bus.type == REFERENCE] Varefs = array([b.v_angle for b in buses if b.type == REFERENCE]) xmin[Va.i1 - 1 + refs] = Varefs xmax[Va.iN - 1 + refs] = Varefs return xmin, xmax
module function_definition identifier parameters identifier identifier identifier identifier identifier block expression_statement assignment identifier list_comprehension attribute identifier identifier for_in_clause identifier identifier if_clause comparison_operator attribute identifier identifier identifier express...
Adds a constraint on the reference bus angles.
def _recv_timeout_loop(self): while self._detect_time: last_wait = time.time() self._lock = hub.Event() self._lock.wait(timeout=self._detect_time) if self._lock.is_set(): if getattr(self, "_auth_seq_known", 0): if last_wait > ti...
module function_definition identifier parameters identifier block while_statement attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier call attribute identifier identifier argum...
A loop to check timeout of receiving remote BFD packet.
def merge_bytes(binder_strings): output = None for byte_string in binder_strings: binder = Binder().from_bytes(byte_string) if output is None: output = binder else: output.merge(binder) return output.to_bytes()
module function_definition identifier parameters identifier block expression_statement assignment identifier none for_statement identifier identifier block expression_statement assignment identifier call attribute call identifier argument_list identifier argument_list identifier if_statement comparison_operator identif...
Concatenate multiple serialized binders into one byte string.
def received_winch(self): def process_winch(): if self._callbacks: self._callbacks.terminal_size_changed() self.call_from_executor(process_winch)
module function_definition identifier parameters identifier block function_definition identifier parameters block if_statement attribute identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list expression_statement call attribute identifier identifier argu...
Notify the event loop that SIGWINCH has been received
def accounts(self) -> AccountsAggregate: if not self.__accounts_aggregate: self.__accounts_aggregate = AccountsAggregate(self.book) return self.__accounts_aggregate
module function_definition identifier parameters identifier type identifier block if_statement not_operator attribute identifier identifier block expression_statement assignment attribute identifier identifier call identifier argument_list attribute identifier identifier return_statement attribute identifier identifier
Returns the Accounts aggregate
def edate(ctx, date, months): return conversions.to_date_or_datetime(date, ctx) + relativedelta(months=conversions.to_integer(months, ctx))
module function_definition identifier parameters identifier identifier identifier block return_statement binary_operator call attribute identifier identifier argument_list identifier identifier call identifier argument_list keyword_argument identifier call attribute identifier identifier argument_list identifier identi...
Moves a date by the given number of months
def from_(cls, gsim): ltbranch = N('logicTreeBranch', {'branchID': 'b1'}, nodes=[N('uncertaintyModel', text=str(gsim)), N('uncertaintyWeight', text='1.0')]) lt = N('logicTree', {'logicTreeID': 'lt1'}, nodes=[N('logicTreeBranchingLevel', {'b...
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list string string_start string_content string_end dictionary pair string string_start string_content string_end string string_start string_content string_end keyword_argument...
Generate a trivial GsimLogicTree from a single GSIM instance.
def read(self, path, encoding=None): b = common.read(path) if encoding is None: encoding = self.file_encoding return self.unicode(b, encoding)
module function_definition identifier parameters identifier identifier default_parameter identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator identifier none block expression_statement assignment identifier attrib...
Read the template at the given path, and return it as a unicode string.
def getMaskIndices(mask): return [ list(mask).index(True), len(mask) - 1 - list(mask)[::-1].index(True) ]
module function_definition identifier parameters identifier block return_statement list call attribute call identifier argument_list identifier identifier argument_list true binary_operator binary_operator call identifier argument_list identifier integer call attribute subscript call identifier argument_list identifier...
get lower and upper index of mask
def update_context(app, pagename, templatename, context, doctree): if doctree is None: return visitor = _FindTabsDirectiveVisitor(doctree) doctree.walk(visitor) if not visitor.found_tabs_directive: paths = [posixpath.join('_static', 'sphinx_tabs/' + f) for f in FILES] if 'css_fil...
module function_definition identifier parameters identifier identifier identifier identifier identifier block if_statement comparison_operator identifier none block return_statement expression_statement assignment identifier call identifier argument_list identifier expression_statement call attribute identifier identif...
Remove sphinx-tabs CSS and JS asset files if not used in a page
def ftp_get(fin_src, fout): assert fin_src[:6] == 'ftp://', fin_src dir_full, fin_ftp = os.path.split(fin_src[6:]) pt0 = dir_full.find('/') assert pt0 != -1, pt0 ftphost = dir_full[:pt0] chg_dir = dir_full[pt0+1:] print('FTP RETR {HOST} {DIR} {SRC} -> {DST}'.format( HOST=ftphost, DIR...
module function_definition identifier parameters identifier identifier block assert_statement comparison_operator subscript identifier slice integer string string_start string_content string_end identifier expression_statement assignment pattern_list identifier identifier call attribute attribute identifier identifier ...
Download a file from an ftp server
def bound_elems(elems): group_x0 = min(map(lambda l: l.x0, elems)) group_y0 = min(map(lambda l: l.y0, elems)) group_x1 = max(map(lambda l: l.x1, elems)) group_y1 = max(map(lambda l: l.y1, elems)) return (group_x0, group_y0, group_x1, group_y1)
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list call identifier argument_list lambda lambda_parameters identifier attribute identifier identifier identifier expression_statement assignment identifier call identifier argument_list...
Finds the minimal bbox that contains all given elems
def _parse_uri_ssh(unt): if '@' in unt.netloc: user, host_port = unt.netloc.split('@', 1) else: user, host_port = None, unt.netloc if ':' in host_port: host, port = host_port.split(':', 1) else: host, port = host_port, None if not user: user = None if not ...
module function_definition identifier parameters identifier block if_statement comparison_operator string string_start string_content string_end attribute identifier identifier block expression_statement assignment pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_lis...
Parse a Uri from a urllib namedtuple.
def initialize_logging(args): log_handler = logging.StreamHandler() log_formatter = logging.Formatter( "%(levelname)s %(asctime)s %(name)s:%(lineno)04d - %(message)s") log_handler.setFormatter(log_formatter) root_logger = logging.getLogger() root_logger.addHandler(log_handler) root_logge...
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement...
Configure the root logger with some sensible defaults.
def Handle(self, args, token=None): if data_store.RelationalDBEnabled(): flow_iterator = iteritems(registry.FlowRegistry.FLOW_REGISTRY) else: flow_iterator = iteritems(registry.AFF4FlowRegistry.FLOW_REGISTRY) result = [] for name, cls in sorted(flow_iterator): if not getattr(cls, "cate...
module function_definition identifier parameters identifier identifier default_parameter identifier none block if_statement call attribute identifier identifier argument_list block expression_statement assignment identifier call identifier argument_list attribute attribute identifier identifier identifier else_clause b...
Renders list of descriptors for all the flows.
def validate_metadata(self, handler): if self.meta == 'category': new_metadata = self.metadata cur_metadata = handler.read_metadata(self.cname) if (new_metadata is not None and cur_metadata is not None and not array_equivalent(new_metadata, cur_metadata)):...
module function_definition identifier parameters identifier identifier block if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call att...
validate that kind=category does not change the categories
def extract_emails(text): text = text.replace(u'\u2024', '.') emails = [] for m in EMAIL_RE.findall(text): emails.append(m[0]) return emails
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content escape_sequence string_end string string_start string_content string_end expression_statement assignment identifier list for_...
Return a list of email addresses extracted from the string.
def _print_code(self, code): for key in self.variables.keys(): for arg in self.variables[key]: code = code.replace(arg.name, 'self.'+arg.name) return code
module function_definition identifier parameters identifier identifier block for_statement identifier call attribute attribute identifier identifier identifier argument_list block for_statement identifier subscript attribute identifier identifier identifier block expression_statement assignment identifier call attribut...
Prepare code for string writing.
def mark_for_update(self): self.pub_statuses.exclude(status=UNPUBLISHED).update(status=NEEDS_UPDATE) push_key.delay(self)
module function_definition identifier parameters identifier block expression_statement call attribute call attribute attribute identifier identifier identifier argument_list keyword_argument identifier identifier identifier argument_list keyword_argument identifier identifier expression_statement call attribute identif...
Note that a change has been made so all Statuses need update
def find_template(self, name): deftemplate = lib.EnvFindDeftemplate(self._env, name.encode()) if deftemplate == ffi.NULL: raise LookupError("Template '%s' not found" % name) return Template(self._env, deftemplate)
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier call attribute identifier identifier argument_list if_statement comparison_operator identifier attribute identifier i...
Find the Template by its name.
def read(self, address, size): value = 0x0 for i in range(0, size): value |= self._read_byte(address + i) << (i * 8) return value
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier integer for_statement identifier call identifier argument_list integer identifier block expression_statement augmented_assignment identifier binary_operator call attribute identifier identi...
Read arbitrary size content from memory.
def format_who_when(fields): offset = fields[3] if offset < 0: offset_sign = b'-' offset = abs(offset) else: offset_sign = b'+' offset_hours = offset // 3600 offset_minutes = offset // 60 - offset_hours * 60 offset_str = offset_sign + ('%02d%02d' % (offset_hours, offset_m...
module function_definition identifier parameters identifier block expression_statement assignment identifier subscript identifier integer if_statement comparison_operator identifier integer block expression_statement assignment identifier string string_start string_content string_end expression_statement assignment ide...
Format a tuple of name,email,secs-since-epoch,utc-offset-secs as a string.
def __set_config_value(self, key, value): self.check_owner() params = {"room": self.room_id, "config": to_json({key: value})} resp = self.conn.make_api_call("setRoomConfig", params) if "error" in resp: raise RuntimeError(f"{resp['error'].get('message') or resp['error']}") ...
module function_definition identifier parameters identifier identifier identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier dictionary pair string string_start string_content string_end attribute identifier identifier pair string string_star...
Sets a value for a room config
def makeAla(segID, N, CA, C, O, geo): CA_CB_length=geo.CA_CB_length C_CA_CB_angle=geo.C_CA_CB_angle N_C_CA_CB_diangle=geo.N_C_CA_CB_diangle carbon_b= calculateCoordinates(N, C, CA, CA_CB_length, C_CA_CB_angle, N_C_CA_CB_diangle) CB= Atom("CB", carbon_b, 0.0 , 1.0, " "," CB", 0,"C") res = Residue...
module function_definition identifier parameters identifier identifier identifier identifier identifier identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier attrib...
Creates an Alanine residue
def merge(self, other): new_node = self.copy() new_node.size += other.size new_node.instruction_addrs += other.instruction_addrs if new_node.byte_string is None or other.byte_string is None: new_node.byte_string = None else: new_node.byte_string += other.b...
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement augmented_assignment attribute identifier identifier attribute identifier identifier expression_statement augmented_assignment a...
Merges this node with the other, returning a new node that spans the both.
def read(self, size=-1): if size == 0: return b'' elif size < 0: from_buf = self._read_from_buffer() self._current_pos = self._content_length return from_buf + self._raw_reader.read() if len(self._buffer) >= size: return self._read_from...
module function_definition identifier parameters identifier default_parameter identifier unary_operator integer block if_statement comparison_operator identifier integer block return_statement string string_start string_end elif_clause comparison_operator identifier integer block expression_statement assignment identif...
Read up to size bytes from the object and return them.
def _parse_xfs_info(data): ret = {} spr = re.compile(r'\s+') entry = None for line in [spr.sub(" ", l).strip().replace(", ", " ") for l in data.split("\n")]: if not line: continue nfo = _xfs_info_get_kv(line) if not line.startswith("="): entry = nfo.pop(0)...
module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier none for_statemen...
Parse output from "xfs_info" or "xfs_growfs -n".
def _match_type(self, i): self.col_match = self.RE_TYPE.match(self._source[i]) if self.col_match is not None: self.section = "types" self.el_type = CustomType self.el_name = self.col_match.group("name") return True else: return False
module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier call attribute attribute identifier identifier identifier argument_list subscript attribute identifier identifier identifier if_statement comparison_operator attribute identifier ...
Looks at line 'i' to see if the line matches a module user type def.
def build_github_url( repo, branch=None, path='requirements.txt', token=None ): repo = re.sub(r"^http(s)?://github.com/", "", repo).strip('/') if not path: path = 'requirements.txt' if not branch: branch = get_default_branch(repo) url = 'https://raw.githubusercontent.com/...
module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier string string_start string_content string_end default_parameter identifier none block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list st...
Builds a URL to a file inside a Github repository.
def _tseitin(ex, auxvarname, auxvars=None): if isinstance(ex, Literal): return ex, list() else: if auxvars is None: auxvars = list() lits = list() constraints = list() for x in ex.xs: lit, subcons = _tseitin(x, auxvarname, auxvars) lits...
module function_definition identifier parameters identifier identifier default_parameter identifier none block if_statement call identifier argument_list identifier identifier block return_statement expression_list identifier call identifier argument_list else_clause block if_statement comparison_operator identifier no...
Convert a factored expression to a literal, and a list of constraints.
def update_pop(self): candidates = [] for ind in self.population: candidates.append(self.crossover(ind)) self._params['model_count'] += len(candidates) self.assign_fitnesses(candidates) for i in range(len(self.population)): if candidates[i].fitness > self....
module function_definition identifier parameters identifier block expression_statement assignment identifier list for_statement identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier expressio...
Updates the population according to crossover and fitness criteria.
def _init_org(self): self.logger.info( "Verifying and refreshing credentials for the specified org: {}.".format( self.org_config.name ) ) orig_config = self.org_config.config.copy() self.org_config.refresh_oauth_token(self.project_config.keychain) ...
module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute attribute identifier identifier identifier expression_statement a...
Test and refresh credentials to the org specified.
def load_adjusted_array(self, domain, columns, dates, sids, mask): out = {} for col in columns: try: loader = self._loaders.get(col) if loader is None: loader = self._loaders[col.unspecialize()] except KeyError: ...
module function_definition identifier parameters identifier identifier identifier identifier identifier identifier block expression_statement assignment identifier dictionary for_statement identifier identifier block try_statement block expression_statement assignment identifier call attribute attribute identifier iden...
Load by delegating to sub-loaders.
def simplices(self): return [Simplex([self.points[i] for i in v]) for v in self.vertices]
module function_definition identifier parameters identifier block return_statement list_comprehension call identifier argument_list list_comprehension subscript attribute identifier identifier identifier for_in_clause identifier identifier for_in_clause identifier attribute identifier identifier
Returns the simplices of the triangulation.
def _get_package_path(self): if not self.package: return [] if not hasattr(self, 'package_path'): m = __import__(self.package) parts = self.package.split('.')[1:] self.package_path = os.path.join(os.path.dirname(m.__file__), *parts) return [self.pa...
module function_definition identifier parameters identifier block if_statement not_operator attribute identifier identifier block return_statement list if_statement not_operator call identifier argument_list identifier string string_start string_content string_end block expression_statement assignment identifier call i...
Gets the path of a Python package
def even_mults(start:float, stop:float, n:int)->np.ndarray: "Build log-stepped array from `start` to `stop` in `n` steps." mult = stop/start step = mult**(1/(n-1)) return np.array([start*(step**i) for i in range(n)])
module function_definition identifier parameters typed_parameter identifier type identifier typed_parameter identifier type identifier typed_parameter identifier type identifier type attribute identifier identifier block expression_statement string string_start string_content string_end expression_statement assignment ...
Build log-stepped array from `start` to `stop` in `n` steps.
def staticdir(): root = os.path.abspath(os.path.dirname(__file__)) return os.path.join(root, "static")
module function_definition identifier parameters block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier return_statement call attribute attribute identifier identifier ide...
Return the location of the static data directory.
def visit_annassign(self, node): target = node.target.accept(self) annotation = node.annotation.accept(self) if node.value is None: return "%s: %s" % (target, annotation) return "%s: %s = %s" % (target, annotation, node.value.accept(self))
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list id...
Return an astroid.AugAssign node as string
def handle_presentation(msg): if msg.child_id == SYSTEM_CHILD_ID: sensorid = msg.gateway.add_sensor(msg.node_id) if sensorid is None: return None msg.gateway.sensors[msg.node_id].type = msg.sub_type msg.gateway.sensors[msg.node_id].protocol_version = msg.payload m...
module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier if_statement comparison_o...
Process a presentation message.
def raw_path_qs(self): if not self.raw_query_string: return self.raw_path return "{}?{}".format(self.raw_path, self.raw_query_string)
module function_definition identifier parameters identifier block if_statement not_operator attribute identifier identifier block return_statement attribute identifier identifier return_statement call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier attrib...
Encoded path of URL with query.
def confusion_matrix(self): confusion_matrix = self.pixel_classification_sum.astype(np.float) confusion_matrix = np.divide(confusion_matrix.T, self.pixel_truth_sum.T).T return confusion_matrix * 100.0
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier expression_statement assignment identifier attribute call attribute identifier identifier argument_list att...
Returns the normalised confusion matrix
def read_mm_header(fh, byteorder, dtype, count, offsetsize): mmh = fh.read_record(TIFF.MM_HEADER, byteorder=byteorder) mmh = recarray2dict(mmh) mmh['Dimensions'] = [ (bytes2str(d[0]).strip(), d[1], d[2], d[3], bytes2str(d[4]).strip()) for d in mmh['Dimensions']] d = mmh['GrayChannel'] ...
module function_definition identifier parameters identifier identifier identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier keyword_argument identifier identifier expression_statement assignment identifier ca...
Read FluoView mm_header tag from file and return as dict.
def delete_all_secrets(cls, user, client_id): can_delete = yield cls(client_id=client_id).can_delete(user) if not can_delete: raise exceptions.Unauthorized('User may not delete {} secrets' .format(client_id)) results = yield cls.view.get(key=...
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier yield call attribute call identifier argument_list keyword_argument identifier identifier identifier argument_list identifier if_statement not_operator identifier block raise_statement call...
Delete all of the client's credentials
def extract_stats(neurons, config): stats = defaultdict(dict) for ns, modes in config['neurite'].items(): for n in config['neurite_type']: n = _NEURITE_MAP[n] for mode in modes: stat_name = _stat_name(ns, mode) stat = eval_stats(nm.get(ns, neurons,...
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list identifier for_statement pattern_list identifier identifier call attribute subscript identifier string string_start string_content string_end identifier argument_list blo...
Extract stats from neurons
def _match(self, regex): cregex = re.compile(regex) for line in self.content.splitlines(): match = cregex.match(line) if match: return match raise Exception('No "{0}" line in {1}.cpp'.format( regex_to_error_msg(regex), self.name ...
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier for_statement identifier call attribute attribute identifier identifier identifier argument_list block expression_statement assignment ide...
Find the first line matching regex and return the match object
def run(self): self.count += 1 print('FailTwicePlug: Run number %s' % (self.count)) if self.count < 3: raise RuntimeError('Fails a couple times') return True
module function_definition identifier parameters identifier block expression_statement augmented_assignment attribute identifier identifier integer expression_statement call identifier argument_list binary_operator string string_start string_content string_end parenthesized_expression attribute identifier identifier if...
Increments counter and raises an exception for first two runs.
def write_flash(self, addr, page_buffer, target_page, page_count): pk = None pk = self.link.receive_packet(0) while pk is not None: pk = self.link.receive_packet(0) retry_counter = 5 while ((not pk or pk.header != 0xFF or struct.unpack('<BB', pk.data[0...
module function_definition identifier parameters identifier identifier identifier identifier identifier block expression_statement assignment identifier none expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list integer while_statement comparison_operator ide...
Initiate flashing of data in the buffer to flash.
def create_hooks(use_tfdbg=False, use_dbgprofile=False, dbgprofile_kwargs=None, use_validation_monitor=False, validation_monitor_kwargs=None, use_early_stopping=False, early_stopping_kwargs=None): train_hooks = [] ...
module function_definition identifier parameters default_parameter identifier false default_parameter identifier false default_parameter identifier none default_parameter identifier false default_parameter identifier none default_parameter identifier false default_parameter identifier none block expression_statement as...
Create train and eval hooks for Experiment.
def FilePattern(pattern, settings, **kwargs): url = _urlparse(pattern) if url.scheme == 'gs': return GoogleStorageFilePattern(pattern, settings, **kwargs) else: assert url.scheme == 'file' return LocalFilePattern(pattern, settings, **kwargs)
module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call identifier argument_list identifier if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block return...
Factory method returns LocalFilePattern or GoogleStorageFilePattern
def create_index(self): self.reset() counter = 0 pre_time = time.time() while True: if counter % 1000 == 0: cur_time = time.time() print('time:', cur_time - pre_time, ' count:', counter) pos = self.tell() cont = self.rea...
module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list while_statement true block if_stateme...
Creates the index file from open record file
def _production(self): return self._nuclear + self._diesel + self._gas + self._wind + self._combined + self._vapor + self._solar + self._hydraulic + self._carbon + self._waste + self._other
module function_definition identifier parameters identifier block return_statement binary_operator binary_operator binary_operator binary_operator binary_operator binary_operator binary_operator binary_operator binary_operator binary_operator attribute identifier identifier attribute identifier identifier attribute ide...
Calculate total energy production. Not rounded
def _set(self, value): super(AttachmentsField, self)._set(value) self._cursor = None
module function_definition identifier parameters identifier identifier block expression_statement call attribute call identifier argument_list identifier identifier identifier argument_list identifier expression_statement assignment attribute identifier identifier none
Override setter, allow clearing cursor
def _load_config_file(self): LOGGER.info('Loading configuration from %s', self._file_path) if self._file_path.endswith('json'): config = self._load_json_config() else: config = self._load_yaml_config() for key, value in [(k, v) for k, v in config.items()]: ...
module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier if_statement call attribute attribute identifier identifier identifier argument_list string string_start...
Load the configuration file into memory, returning the content.
def _requested_name(self, name, action=None, func=None): if name is not None: if name in self._used_names: n = 2 while True: pn = name + '_' + str(n) if pn not in self._used_names: self._used_names.add(pn...
module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier none block if_statement comparison_operator identifier none block if_statement comparison_operator identifier attribute identifier identifier block expression_statement assignment identi...
Create a unique name for an operator or a stream.
def _get_comments_to_export(self, last_export_id=None): qs = comments.get_model().objects.order_by('pk')\ .filter(is_public=True, is_removed=False) if last_export_id is not None: print("Resuming after comment %s" % str(last_export_id)) qs = qs.filter(id__gt=last_e...
module function_definition identifier parameters identifier default_parameter identifier none block expression_statement assignment identifier call attribute call attribute attribute call attribute identifier identifier argument_list identifier identifier argument_list string string_start string_content string_end line...
Return comments which should be exported.
def _git_dir(repo, path): name = "%s" % (path,) if name in ['HEAD', 'ORIG_HEAD', 'FETCH_HEAD', 'index', 'logs']: return repo.git_dir return repo.common_dir
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier binary_operator string string_start string_content string_end tuple identifier if_statement comparison_operator identifier list string string_start string_content string_end string string_start string...
Find the git dir that's appropriate for the path
def _center_window(self, result, window): if self.axis > result.ndim - 1: raise ValueError("Requested axis is larger then no. of argument " "dimensions") offset = _offset(window, True) if offset > 0: if isinstance(result, (ABCSeries, ABCDataFr...
module function_definition identifier parameters identifier identifier identifier block if_statement comparison_operator attribute identifier identifier binary_operator attribute identifier identifier integer block raise_statement call identifier argument_list concatenated_string string string_start string_content stri...
Center the result in the window.
def _put(self, uri, data): headers = self._get_headers() logging.debug("URI=" + str(uri)) logging.debug("BODY=" + json.dumps(data)) response = self.session.put(uri, headers=headers, data=json.dumps(data)) if response.status_code in [201, 204]: return d...
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end call...
Simple PUT operation for a given path.
def _toggle_term_protect(name, value): instance_id = _get_node(name)['instanceId'] params = {'Action': 'ModifyInstanceAttribute', 'InstanceId': instance_id, 'DisableApiTermination.Value': value} result = aws.query(params, location=get_location(), ...
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier subscript call identifier argument_list identifier string string_start string_content string_end expression_statement assignment identifier dictionary pair string string_start string_content string_en...
Enable or Disable termination protection on a node
def classify(self, table, weighted_choice=False, transform=None): assert table.shape[1] == self.numgrp if weighted_choice: if transform is not None: probs = transform_fn(table.copy(), transform) else: probs = table.copy() cmprobs = prob...
module function_definition identifier parameters identifier identifier default_parameter identifier false default_parameter identifier none block assert_statement comparison_operator subscript attribute identifier identifier integer attribute identifier identifier if_statement identifier block if_statement comparison_o...
The Classification step of the CEM algorithm
def _validate_operator_name(operator, supported_operators): if not isinstance(operator, six.text_type): raise TypeError(u'Expected operator as unicode string, got: {} {}'.format( type(operator).__name__, operator)) if operator not in supported_operators: raise GraphQLCompilationError...
module function_definition identifier parameters identifier identifier block if_statement not_operator call identifier argument_list identifier attribute identifier identifier block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attrib...
Ensure the named operator is valid and supported.
def sameAddr(self, ha, ha2) -> bool: if ha == ha2: return True if ha[1] != ha2[1]: return False return ha[0] in self.localips and ha2[0] in self.localips
module function_definition identifier parameters identifier identifier identifier type identifier block if_statement comparison_operator identifier identifier block return_statement true if_statement comparison_operator subscript identifier integer subscript identifier integer block return_statement false return_statem...
Check whether the two arguments correspond to the same address
def union(self, other): return Interval(min(self.low, other.low), max(self.high, other.high))
module function_definition identifier parameters identifier identifier block return_statement call identifier argument_list call identifier argument_list attribute identifier identifier attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier
Intersect current range with other.
def tags(self): tags = self.workbench.get_all_tags() if not tags: return tag_df = pd.DataFrame(tags) tag_df = self.vectorize(tag_df, 'tags') print '\n%sSamples in Database%s' % (color.LightPurple, color.Normal) self.top_corr(tag_df)
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list if_statement not_operator identifier block return_statement expression_statement assignment identifier call attribute identifier identifier...
Display tag information for all samples in database
def extract_metrics(self, metrics_files): extension_maps = dict( align_metrics=(self._parse_align_metrics, "AL"), dup_metrics=(self._parse_dup_metrics, "DUP"), hs_metrics=(self._parse_hybrid_metrics, "HS"), insert_metrics=(self._parse_insert_metrics, "INS"), ...
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list keyword_argument identifier tuple attribute identifier identifier string string_start string_content string_end keyword_argument identifier tuple attribute identifier ide...
Return summary information for a lane of metrics files.
def total_write_throughput(self): total = self.write_throughput for index in itervalues(self.global_indexes): total += index.write_throughput return total
module function_definition identifier parameters identifier block expression_statement assignment identifier attribute identifier identifier for_statement identifier call identifier argument_list attribute identifier identifier block expression_statement augmented_assignment identifier attribute identifier identifier r...
Combined write throughput of table and global indexes
def dedent(s): head, _, tail = s.partition('\n') dedented_tail = textwrap.dedent(tail) result = "{head}\n{tail}".format( head=head, tail=dedented_tail) return result
module function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier identifier call attribute identifier identifier argument_list string string_start string_content escape_sequence string_end expression_statement assignment identifier call attribute ident...
Removes the hanging dedent from all the first line of a string.
def mtf_unitransformer_base(): hparams = mtf_transformer2_base() hparams.add_hparam("autoregressive", True) hparams.add_hparam("layers", ["self_att", "drd"] * 6) hparams.add_hparam("num_heads", 8) hparams.add_hparam("num_memory_heads", 0) hparams.add_hparam("shared_kv", False) hparams.add_hparam("local_at...
module function_definition identifier parameters block expression_statement assignment identifier call identifier argument_list expression_statement call attribute identifier identifier argument_list string string_start string_content string_end true expression_statement call attribute identifier identifier argument_li...
Hyperparameters for single-stack Transformer.
def nonwhitelisted_allowed_principals(self, whitelist=None): if not whitelist: return [] nonwhitelisted = [] for statement in self.statements: if statement.non_whitelisted_principals(whitelist) and statement.effect == "Allow": nonwhitelisted.append(stateme...
module function_definition identifier parameters identifier default_parameter identifier none block if_statement not_operator identifier block return_statement list expression_statement assignment identifier list for_statement identifier attribute identifier identifier block if_statement boolean_operator call attribute...
Find non whitelisted allowed principals.
def process(self, makeGlyphs=True, makeKerning=True, makeInfo=True): if self.logger: self.logger.info("Reading %s", self.path) self.readInstances(makeGlyphs=makeGlyphs, makeKerning=makeKerning, makeInfo=makeInfo) self.reportProgress("done", 'stop')
module function_definition identifier parameters identifier default_parameter identifier true default_parameter identifier true default_parameter identifier true block if_statement attribute identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string s...
Process the input file and generate the instances.
def declare_namespace(packageName): _imp.acquire_lock() try: if packageName in _namespace_packages: return path = sys.path parent, _, _ = packageName.rpartition('.') if parent: declare_namespace(parent) if parent not in _namespace_packages: ...
module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list try_statement block if_statement comparison_operator identifier identifier block return_statement expression_statement assignment identifier attribute identifier identifier expressio...
Declare that package 'packageName' is a namespace package
def add_menu(self, name, link=None): if self.menu_began: if self.menu_separator_tag: self.write(self.menu_separator_tag) else: self.write('<ul class="horizontal">') self.menu_began = True self.write('<li>') if link: self.wri...
module function_definition identifier parameters identifier identifier default_parameter identifier none block if_statement attribute identifier identifier block if_statement attribute identifier identifier block expression_statement call attribute identifier identifier argument_list attribute identifier identifier els...
Adds a menu entry, will create it if it doesn't exist yet
def _convertTZ(self): tz = timezone.get_current_timezone() dtstart = self['DTSTART'] dtend = self['DTEND'] if dtstart.zone() == "UTC": dtstart.dt = dtstart.dt.astimezone(tz) if dtend.zone() == "UTC": dtend.dt = dtend.dt.astimezone(tz)
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement assignment identifier subscri...
Will convert UTC datetimes to the current local timezone
def include_raw_constructor(self, loader, node): path = convert_path(node.value) with open(path, 'r') as f: config = f.read() config = self.inject_include_info(path, config, include_type='include-raw') self.add_file(path, config) return config
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list attribute identifier identifier with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content str...
Called when PyYaml encounters '!include-raw'
def strip_ip_port(ip_address): if '.' in ip_address: cleaned_ip = ip_address.split(':')[0] elif ']:' in ip_address: cleaned_ip = ip_address.rpartition(':')[0][1:-1] else: cleaned_ip = ip_address return cleaned_ip
module function_definition identifier parameters identifier block if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment identifier subscript call attribute identifier identifier argument_list string string_start string_content string_end integer ...
Strips the port from an IPv4 or IPv6 address, returns a unicode object.
def _get_cu_and_fu_status(self): headers = HEADERS.copy() headers['Accept'] = '*/*' headers['X-Requested-With'] = 'XMLHttpRequest' headers['X-CSRFToken'] = self._parent.csrftoken args = '?controller_serial=' + self.serial \ + '&faucet_serial=' + self.faucet.serial ...
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment subscript identifier string string_start string_content string_end string string_start string_content string_end expression_stat...
Submit GET request to update information.
def retract(self, e, a, v): ta = datetime.datetime.now() ret = u"[:db/retract %i :%s %s]" % (e, a, dump_edn_val(v)) rs = self.tx(ret) tb = datetime.datetime.now() - ta print cl('<<< retracted %s,%s,%s in %sms' % (e,a,v, tb.microseconds/1000.0), 'cyan') return rs
module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement assignment identifier binary_operator string string_start string_content string_end t...
redact the value of an attribute
def populateFromRow(self, callSetRecord): self._biosampleId = callSetRecord.biosampleid self.setAttributesJson(callSetRecord.attributes)
module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list attribute identifier identifier
Populates this CallSet from the specified DB row.
def parse_output(self, line): try: key, value = line.split(":") self.update_value(key.strip(), value.strip()) except ValueError: pass
module function_definition identifier parameters identifier identifier block try_statement block expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier a...
Convert output to key value pairs
def combine_recs(rec_list, key): final_recs = {} for rec in rec_list: rec_key = rec[key] if rec_key in final_recs: for k, v in rec.iteritems(): if k in final_recs[rec_key] and final_recs[rec_key][k] != v: raise Exception("Mis-match for key '%s'" % ...
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary for_statement identifier identifier block expression_statement assignment identifier subscript identifier identifier if_statement comparison_operator identifier identifier block for_stateme...
Use a common key to combine a list of recs
def worker(namespace, name, branch='master'): with repository(namespace, name, branch) as (path, latest, cache): if cache.get(latest, None) and json.loads(cache[latest])['status'] != 'starting': return 'Build already started' data = {'status': 'in_progress', 'result': ''} cache[l...
module function_definition identifier parameters identifier identifier default_parameter identifier string string_start string_content string_end block with_statement with_clause with_item as_pattern call identifier argument_list identifier identifier identifier as_pattern_target tuple identifier identifier identifier ...
The simple_ci background worker process
def possible_completions(self, e): u completions = self._get_completions() self._display_completions(completions) self.finalize()
module function_definition identifier parameters identifier identifier block expression_statement identifier expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribut...
u"""List the possible completions of the text before point.
def strictly_increasing(values): return all(x < y for x, y in zip(values, values[1:]))
module function_definition identifier parameters identifier block return_statement call identifier generator_expression comparison_operator identifier identifier for_in_clause pattern_list identifier identifier call identifier argument_list identifier subscript identifier slice integer
True if values are stricly increasing.
def cli(env): table = formatting.Table([ 'Id', 'Name', 'Created', 'Expiration', 'Status', 'Package Name', 'Package Id' ]) table.align['Name'] = 'l' table.align['Package Name'] = 'r' table.align['Package Id'] = 'l' manager = ordering.OrderingManager(env.client) items = manager.get_quo...
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end string string_sta...
List all active quotes on an account