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def find_if_expression_as_statement(node): return ( isinstance(node, ast.Expr) and isinstance(node.value, ast.IfExp) )
module function_definition identifier parameters identifier block return_statement parenthesized_expression boolean_operator call identifier argument_list identifier attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier
Finds an "if" expression as a statement
def clear_selection(self): text_cursor = self._editor.textCursor() text_cursor.clearSelection() self._editor.setTextCursor(text_cursor)
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement call attribute identifier identifier argument_list expression_statement call attribute attribute identifier identifier...
Clears text cursor selection.
def _hammer_function(self, x,x0,r_x0, s_x0): return norm.logcdf((np.sqrt((np.square(np.atleast_2d(x)[:,None,:]-np.atleast_2d(x0)[None,:,:])).sum(-1))- r_x0)/s_x0)
module function_definition identifier parameters identifier identifier identifier identifier identifier block return_statement call attribute identifier identifier argument_list binary_operator parenthesized_expression binary_operator call attribute identifier identifier argument_list call attribute parenthesized_expre...
Creates the function to define the exclusion zones
def _parse_box_list(self, output): boxes = [] name = provider = version = None for timestamp, target, kind, data in self._parse_machine_readable_output(output): if kind == 'box-name': if name is not None: boxes.append(Box(name=name, provider=provid...
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list expression_statement assignment identifier assignment identifier assignment identifier none for_statement pattern_list identifier identifier identifier identifier call attribute identifier identi...
Remove Vagrant usage for unit testing
def _init_client_authentication( self, client_certchain_file: Optional[str], client_key_file: Optional[str], client_key_type: OpenSslFileTypeEnum, client_key_password: str, ignore_client_authentication_requests: bool ) -> None: if clien...
module function_definition identifier parameters identifier typed_parameter identifier type generic_type identifier type_parameter type identifier typed_parameter identifier type generic_type identifier type_parameter type identifier typed_parameter identifier type identifier typed_parameter identifier type identifier ...
Setup client authentication using the supplied certificate and key.
def _prt_read_msg(self, prt, fin_txt, exclude_ungrouped): if self.sections_seen or exclude_ungrouped: dat = SummarySec2dHdrGos().summarize_sec2hdrgos(self.section2goids.items()) sys.stdout.write(Grouper.fmtsum.format( GO_DESC='hdr', SECs=len(dat['S']), GOs=len(dat['G']), ...
module function_definition identifier parameters identifier identifier identifier identifier block if_statement boolean_operator attribute identifier identifier identifier block expression_statement assignment identifier call attribute call identifier argument_list identifier argument_list call attribute attribute iden...
Print which file was read and the number of GO IDs found.
def log_debug(func, *args, **kwargs): logging.debug('Starting "%s" in thread %s...', func.__name__, current_thread()) results = func(*args, **kwargs) logging.debug('Successfully finished "%s" in thread %s.', func.__name__, current_thread()) return results
module function_definition identifier parameters identifier list_splat_pattern identifier dictionary_splat_pattern identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier call identifier argument_list expressi...
Wrap call of provided function with debug log statements.
def _on_client_volume_changed(self, data): self._clients.get(data.get('id')).update_volume(data)
module function_definition identifier parameters identifier identifier block expression_statement call attribute call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end identifier argument_list identifier
Handle client volume change.
def flush(self): if self.parent != (): self.parent.flush() if self.hdf5: self.hdf5.flush()
module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier tuple block expression_statement call attribute attribute identifier identifier identifier argument_list if_statement attribute identifier identifier block expression_statement call attribu...
Flush the underlying hdf5 file
def downsample(in_bam, data, target_counts, work_dir=None): index(in_bam, data["config"], check_timestamp=False) ds_pct = get_downsample_pct(in_bam, target_counts, data) if ds_pct: out_file = "%s-downsample%s" % os.path.splitext(in_bam) if work_dir: out_file = os.path.join(work_d...
module function_definition identifier parameters identifier identifier identifier default_parameter identifier none block expression_statement call identifier argument_list identifier subscript identifier string string_start string_content string_end keyword_argument identifier false expression_statement assignment ide...
Downsample a BAM file to the specified number of target counts.
def uri(self): return self.uri_template.format( host=self.host, port="" if self.port is None else self.port, database=self.database, username=self.username, password="" if self.password is None else self.password, has_password="" if self.pa...
module function_definition identifier parameters identifier block return_statement call attribute attribute identifier identifier identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier conditional_expression string string_start string_end comparison_operator att...
Return sqlalchemy connect string URI.
def sidereal_time(t): theta = earth_rotation_angle(t.ut1) t = (t.tdb - T0) / 36525.0 st = ( 0.014506 + (((( - 0.0000000368 * t - 0.000029956 ) * t - 0.00000044 ) * t + 1.3915817 ) * t + 4612.156534 ) * t) return (...
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list attribute identifier identifier expression_statement assignment identifier binary_operator parenthesized_expression binary_operator attribute identifier identifier identifier float ...
Compute Greenwich sidereal time at the given ``Time``.
def map_constructor(self, loader, node, deep=False): mapping = {} for key_node, value_node in node.value: key = loader.construct_object(key_node, deep=deep) value = loader.construct_object(value_node, deep=deep) if key in mapping: raise ValueError(f"D...
module function_definition identifier parameters identifier identifier identifier default_parameter identifier false block expression_statement assignment identifier dictionary for_statement pattern_list identifier identifier attribute identifier identifier block expression_statement assignment identifier call attribut...
Walk the mapping, recording any duplicate keys.
def register(klass): "Register a class into the agnocomplete registry." logger.info("registering {}".format(klass.__name__)) AGNOCOMPLETE_REGISTRY[klass.slug] = klass
module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifi...
Register a class into the agnocomplete registry.
def get(self, key, _else=None): with self._lock: self.expired() try: value = self._dict[key].get() return value except KeyError: return _else except ValueError: return _else
module function_definition identifier parameters identifier identifier default_parameter identifier none block with_statement with_clause with_item attribute identifier identifier block expression_statement call attribute identifier identifier argument_list try_statement block expression_statement assignment identifier...
The method to get an assets value
def toml(uncertainty): text = uncertainty.text.strip() if not text.startswith('['): text = '[%s]' % text for k, v in uncertainty.attrib.items(): try: v = ast.literal_eval(v) except ValueError: v = repr(v) text += '\n%s = %s' % (k, v) return text
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list if_statement not_operator call attribute identifier identifier argument_list string string_start string_content string_end block expression...
Converts an uncertainty node into a TOML string
def loads(content): lines = _group_lines(line for line in content.split('\n')) lines = [ (i, _parse_envfile_line(line)) for i, line in lines if line.strip() ] errors = [] duplicates = _find_duplicates(((i, line[0]) for i, line in lines)) for i, variable, j in duplicates: ...
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier generator_expression identifier for_in_clause identifier call attribute identifier identifier argument_list string string_start string_content escape_sequence string_end expression_statement assi...
Loads variable definitions from a string.
def write_config_file(self, params, path): cfgp = ConfigParser() cfgp.add_section(params['name']) for p in params: if p == 'name': continue cfgp.set(params['name'], p, params[p]) f = open(os.path.join(path, 'experiment.cfg'), 'w') cfgp.writ...
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list expression_statement call attribute identifier identifier argument_list subscript identifier string string_start string_content string_end for_statement identi...
write a config file for this single exp in the folder path.
def _parse_queue_message_from_headers(response): headers = _parse_response_for_dict(response) message = QueueMessage() message.pop_receipt = headers.get('x-ms-popreceipt') message.time_next_visible = parser.parse(headers.get('x-ms-time-next-visible')) return message
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list expression_statement assignment attribute identifier identifier call attribute identifier identif...
Extracts pop receipt and time next visible from headers.
def compile_jobgroups_from_joblist(joblist, jgprefix, sgegroupsize): jobcmds = defaultdict(list) for job in joblist: jobcmds[job.command.split(' ', 1)[0]].append(job.command) jobgroups = [] for cmds in list(jobcmds.items()): sublists = split_seq(cmds[1], sgegroupsize) count = 0 ...
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list identifier for_statement identifier identifier block expression_statement call attribute subscript identifier subscript call attribute attribute identifier ide...
Return list of jobgroups, rather than list of jobs.
def get(self, block_number: BlockNumber) -> str: if block_number in self.mapping: return self.mapping[block_number] block_hash = self.web3.eth.getBlock(block_number)['hash'] block_hash = block_hash.hex() self.mapping[block_number] = block_hash return block_hash
module function_definition identifier parameters identifier typed_parameter identifier type identifier type identifier block if_statement comparison_operator identifier attribute identifier identifier block return_statement subscript attribute identifier identifier identifier expression_statement assignment identifier ...
Given a block number returns the hex representation of the blockhash
def install_language(language): translator = get_translator(default_domain, default_directory, languages=[get_lang(language)], fallback=True) do_unicode = True translator.install(do_unicode)
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier identifier keyword_argument identifier list call identifier argument_list identifier keyword_argument identifier true expression_statement assignment identifier true expr...
Install translation service routines into default namespace.
def input(input_id, name, value_class=NumberValue): def _init(): return value_class( name, input_id=input_id, is_input=True, index=-1 ) def _decorator(cls): setattr(cls, input_id, _init()) ret...
module function_definition identifier parameters identifier identifier default_parameter identifier identifier block function_definition identifier parameters block return_statement call identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier true keyword_argument identifi...
Add input to controller
def prt_goids(self, goids=None, prtfmt=None, sortby=True, prt=sys.stdout): if goids is None: goids = self.go_sources nts = self.get_nts(goids, sortby) if prtfmt is None: prtfmt = self.prt_attr['fmta'] for ntgo in nts: key2val = ntgo._asdict() ...
module function_definition identifier parameters identifier default_parameter identifier none default_parameter identifier none default_parameter identifier true default_parameter identifier attribute identifier identifier block if_statement comparison_operator identifier none block expression_statement assignment iden...
Given GO IDs, print decriptive info about each GO Term.
def serverProperties(self): return ServerProperties(url=self._url + "/properties", securityHandler=self._securityHandler, proxy_url=self._proxy_url, proxy_port=self._proxy_port, initiali...
module function_definition identifier parameters identifier block return_statement call identifier argument_list keyword_argument identifier binary_operator attribute identifier identifier string string_start string_content string_end keyword_argument identifier attribute identifier identifier keyword_argument identifi...
gets the server properties for the site as an object
def _memory_usage(func, gallery_conf): if gallery_conf['show_memory']: from memory_profiler import memory_usage assert callable(func) mem, out = memory_usage(func, max_usage=True, retval=True, multiprocess=True) mem = mem[0] else: out = fun...
module function_definition identifier parameters identifier identifier block if_statement subscript identifier string string_start string_content string_end block import_from_statement dotted_name identifier dotted_name identifier assert_statement call identifier argument_list identifier expression_statement assignment...
Get memory usage of a function call.
def output_markdown(markdown_cont, output_file): if output_file: with open(output_file, 'w') as out: out.write(markdown_cont)
module function_definition identifier parameters identifier identifier block if_statement identifier block with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call attribute identif...
Writes to an output file if `outfile` is a valid path.
def as_contours(self): contours = dict() for byte_value in self.__byte_values: if byte_value == 0: continue mask = (self.__array == byte_value) * 255 found_contours = find_contours(mask, 254, fully_connected='high') contours[byte_value] = C...
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list for_statement identifier attribute identifier identifier block if_statement comparison_operator identifier integer block continue_statement expression_statement assignment identifie...
A dictionary of lists of contours keyed by byte_value
def do_load(self, filename): try: self.__session.load(filename) except IOError as e: self.logger.error(e.strerror)
module function_definition identifier parameters identifier identifier block try_statement block expression_statement call attribute attribute identifier identifier identifier argument_list identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute attribute id...
Load disk image for analysis
def _render_children(self, contexts, partials): ret = [] for child in self.children: ret.append(child._render(contexts, partials)) return EMPTYSTRING.join(ret)
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier list for_statement identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_lis...
Render the children tokens
def setup_html_filter(portal): logger.info("*** Setup HTML Filter ***") adapter = IFilterSchema(portal) style_whitelist = adapter.style_whitelist for style in ALLOWED_STYLES: logger.info("Allow style '{}'".format(style)) if style not in style_whitelist: style_whitelist.append...
module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier attribute...
Setup HTML filtering for resultsinterpretations
def age_gender_section_header_element(feature, parent): _ = feature, parent header = age_gender_section_header['string_format'] return header.capitalize()
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier expression_list identifier identifier expression_statement assignment identifier subscript identifier string string_start string_content string_end return_statement call attribute identifier identifie...
Retrieve age gender section header string from definitions.
def destroy(self): super(Syndic, self).destroy() if hasattr(self, 'local'): del self.local if hasattr(self, 'forward_events'): self.forward_events.stop()
module function_definition identifier parameters identifier block expression_statement call attribute call identifier argument_list identifier identifier identifier argument_list if_statement call identifier argument_list identifier string string_start string_content string_end block delete_statement attribute identifi...
Tear down the syndic minion
def check_backend() -> bool: try: call('gatttool', stdout=PIPE, stderr=PIPE) return True except OSError as os_err: msg = 'gatttool not found: {}'.format(str(os_err)) _LOGGER.error(msg) return False
module function_definition identifier parameters type identifier block try_statement block expression_statement call identifier argument_list string string_start string_content string_end keyword_argument identifier identifier keyword_argument identifier identifier return_statement true except_clause as_pattern identif...
Check if gatttool is available on the system.
async def get_zones(self) -> List[Zone]: res = await self.services["avContent"]["getCurrentExternalTerminalsStatus"]() zones = [Zone.make(services=self.services, **x) for x in res if 'meta:zone:output' in x['meta']] if not zones: raise SongpalException("Device has no zones") ...
module function_definition identifier parameters identifier type generic_type identifier type_parameter type identifier block expression_statement assignment identifier await call subscript subscript attribute identifier identifier string string_start string_content string_end string string_start string_content string_...
Return list of available zones.
def adc_to_percentage(value, max_volts, clamp=True): percentage = (100.0 / const.ADC_MAX_VAL) * value return max(min(100, percentage), 0) if clamp else percentage
module function_definition identifier parameters identifier identifier default_parameter identifier true block expression_statement assignment identifier binary_operator parenthesized_expression binary_operator float attribute identifier identifier identifier return_statement conditional_expression call identifier argu...
Convert the ADC raw value to a percentage.
def _render_str(self, string): if isinstance(string, StrLabel): string = string._render(string.expr) string = str(string) if len(string) == 0: return '' name, supers, subs = split_super_sub(string) return render_latex_sub_super( name, subs, sup...
module function_definition identifier parameters identifier identifier block if_statement call identifier argument_list identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier expression_statement assignment identifier cal...
Returned a texified version of the string
def followingPrefix(prefix): prefixBytes = array('B', prefix) changeIndex = len(prefixBytes) - 1 while (changeIndex >= 0 and prefixBytes[changeIndex] == 0xff ): changeIndex = changeIndex - 1; if(changeIndex < 0): return None newBytes = array('B', prefix[0:...
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list string string_start string_content string_end identifier expression_statement assignment identifier binary_operator call identifier argument_list identifier integer while_statement ...
Returns a String that sorts just after all Strings beginning with a prefix
def insert(conn, qualified_name: str, column_names, records): query = create_insert_statement(qualified_name, column_names) with conn: with conn.cursor(cursor_factory=NamedTupleCursor) as cursor: for record in records: cursor.execute(query, record)
module function_definition identifier parameters identifier typed_parameter identifier type identifier identifier identifier block expression_statement assignment identifier call identifier argument_list identifier identifier with_statement with_clause with_item identifier block with_statement with_clause with_item as_...
Insert a collection of namedtuple records.
def diff(self, n, axis=1): new_values = algos.diff(self.values, n, axis=axis) return [self.make_block(values=new_values)]
module function_definition identifier parameters identifier identifier default_parameter identifier integer block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier identifier keyword_argument identifier identifier return_statement list call att...
return block for the diff of the values
async def handle_agent_message(self, agent_addr, message): message_handlers = { AgentHello: self.handle_agent_hello, AgentJobStarted: self.handle_agent_job_started, AgentJobDone: self.handle_agent_job_done, AgentJobSSHDebug: self.handle_agent_job_ssh_debug, ...
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier dictionary pair identifier attribute identifier identifier pair identifier attribute identifier identifier pair identifier attribute identifier identifier pair identifier attribute identifi...
Dispatch messages received from agents to the right handlers
def _set_watering_time(self, zoneid, value): if value not in MANUAL_WATERING_ALLOWED: raise ValueError( 'Valid options are: {}'.format( ', '.join(map(str, MANUAL_WATERING_ALLOWED))) ) if isinstance(value, int) and value == 0: value ...
module function_definition identifier parameters identifier identifier identifier block if_statement comparison_operator identifier identifier block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list call attribute string string_start stri...
Private method to set watering_time per zone.
def valid_header_waiting(self): if len(self.buffer) < 4: self.logger.debug("Buffer does not yet contain full header") result = False else: result = True result = result and self.buffer[0] == velbus.START_BYTE if not result: self...
module function_definition identifier parameters identifier block if_statement comparison_operator call identifier argument_list attribute identifier identifier integer block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expres...
Check if a valid header is waiting in buffer
def to_json(self): sanitized_lut = {} for k, v in self.lut.items(): san_v = list(v) repr_dims = str(v[1]) san_v[1] = repr_dims sanitized_lut[k] = tuple(san_v) return json.dumps(sanitized_lut)
module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block expression_statement assignment identifier call identifier argument_list ...
Returns a json-serialized version of the unit registry
def mk_token(self, load): if not self.authenticate_eauth(load): return {} if self._allow_custom_expire(load): token_expire = load.pop('token_expire', self.opts['token_expire']) else: _ = load.pop('token_expire', None) token_expire = self.opts['toke...
module function_definition identifier parameters identifier identifier block if_statement not_operator call attribute identifier identifier argument_list identifier block return_statement dictionary if_statement call attribute identifier identifier argument_list identifier block expression_statement assignment identifi...
Run time_auth and create a token. Return False or the token
def collect_static(static_folder): appbuilder_static_path = os.path.join( os.path.dirname(os.path.abspath(__file__)), "static/appbuilder" ) app_static_path = os.path.join(os.getcwd(), static_folder) if not os.path.isdir(app_static_path): click.echo( click.style( ...
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_...
Copies flask-appbuilder static files to your projects static folder
def extract(self, zip_archive, font_files): tmp_container = tempfile.mkdtemp(prefix='icomoon-tmp') self._debug("* Temporary dir for extracted archive: {}", tmp_container) zip_archive.extract(settings.ICOMOON_MANIFEST_FILENAME, tmp_container) for item in font_files: zip_archiv...
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier string string_start string_content string_end expression_statement call attribute identifier identifier argume...
Extract files to install
def _mapped_std_streams(lookup_paths, streams=('stdin', 'stdout', 'stderr')): standard_inos = {} for stream in streams: try: stream_stat = os.fstat(getattr(sys, stream).fileno()) key = stream_stat.st_dev, stream_stat.st_ino standard_inos[key] = stream except E...
module function_definition identifier parameters identifier default_parameter identifier tuple string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end block expression_statement assignment identifier dictionary for_statement identifier id...
Get a mapping of standard streams to given paths.
def __get_url(self, endpoint): url = self.url api = "wc-api" if url.endswith("/") is False: url = "%s/" % url if self.wp_api: api = "wp-json" return "%s%s/%s/%s" % (url, api, self.version, endpoint)
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier string string_start string_content string_end if_statement comparison_operator call attribute identifier identifier argument_...
Get URL for requests
def write(self, name, data): if isinstance(data, StringIO): self.zf.writestr(name, data.getvalue()) else: self.zf.writestr(name, to_utf8(data))
module function_definition identifier parameters identifier identifier identifier block if_statement call identifier argument_list identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier call attribute identifier identifier argument_list else_c...
Write a blob of data to the XPI manager.
def from_json(cls, string): exp_dict = json_to_data(string) version = exp_dict.get('version', 0) if version == 0: return cls.from_dict(exp_dict) elif version == 1: return cls.from_dict(exp_dict) else: raise ValueError("Version %d not supported"...
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end integer if_statemen...
Create a ChemicalEntity from a json string
def data_filler_simple_registration(self, number_of_rows, pipe): try: for i in range(number_of_rows): pipe.hmset('simple_registration:%s' % i, { 'id': rnd_id_generator(self), 'email': self.faker.safe_email(), 'password': sel...
module function_definition identifier parameters identifier identifier identifier block try_statement block for_statement identifier call identifier argument_list identifier block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identi...
creates keys with simple regis. information
def _detect_devices(self) -> None: devices_num = len(self.devices_list) if devices_num == 0: raise DeviceConnectionException( 'No devices are connected. Please connect the device with USB or via WLAN and turn on the USB debugging option.') elif not self.device_sn and ...
module function_definition identifier parameters identifier type none block expression_statement assignment identifier call identifier argument_list attribute identifier identifier if_statement comparison_operator identifier integer block raise_statement call identifier argument_list string string_start string_content ...
Detect whether devices connected.
async def spawn(self): self._server._pending_set.add(self) await self._server._sem.acquire() self._subprocess = await asyncio.create_subprocess_shell( self._cmd, stdout=asyncio.subprocess.PIPE, stderr=asyncio.subprocess.PIPE) self._began_at = datetime....
module function_definition identifier parameters identifier block expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list identifier expression_statement await call attribute attribute attribute identifier identifier identifier identifier argument_list expressio...
Spawn the command wrapped in this object as a subprocess.
def getTheta(k, nTrials=100000): theDots = np.zeros(nTrials) w1 = getSparseTensor(k, k, nTrials, fixedRange=1.0/k) for i in range(nTrials): theDots[i] = w1[i].dot(w1[i]) dotMean = theDots.mean() print("k=", k, "min/mean/max diag of w dot products", theDots.min(), dotMean, theDots.max()) theta = ...
module function_definition identifier parameters identifier default_parameter identifier integer block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier identifier identifier keywor...
Estimate a reasonable value of theta for this k.
def write_conf(self): f = open(self.output_filename, 'w') print(self.t.render(prefixes=self.prefixes), file=f) f.close()
module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list attribute identifier identifier string string_start string_content string_end expression_statement call identifier argument_list call attribute attribute identifier identifier ident...
Write the config to file
def delete(callback=None, path=None, method=Method.DELETE, tags=None, summary="Delete specified resource.", middleware=None): def inner(c): op = Operation(c, path or PathParam('{key_field}'), method, None, tags, summary, middleware) op.responses.add(Response(HTTPStatus.NO_CONTENT, "{name}...
module function_definition identifier parameters default_parameter identifier none default_parameter identifier none default_parameter identifier attribute identifier identifier default_parameter identifier none default_parameter identifier string string_start string_content string_end default_parameter identifier none...
Decorator to configure an operation that deletes resource.
def _before_after(n_samples): if not isinstance(n_samples, (tuple, list)): before = n_samples // 2 after = n_samples - before else: assert len(n_samples) == 2 before, after = n_samples n_samples = before + after assert before >= 0 assert after >= 0 assert befo...
module function_definition identifier parameters identifier block if_statement not_operator call identifier argument_list identifier tuple identifier identifier block expression_statement assignment identifier binary_operator identifier integer expression_statement assignment identifier binary_operator identifier ident...
Get the number of samples before and after.
def _get_responses(link): template = link.response_schema template.update({'description': 'Success'}) res = {200: template} res.update(link.error_status_codes) return res
module function_definition identifier parameters identifier block expression_statement assignment identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list dictionary pair string string_start string_content string_end string string_start string_content string_end...
Returns an OpenApi-compliant response
def validate(identifier): source = actions.validate_source(identifier) log.info('Source %s (%s) has been validated', source.slug, str(source.id))
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end attribute identifier identifier...
Validate a source given its identifier
def close(self): if self._socket is not None and self._conn is not None: message_input = UnityMessage() message_input.header.status = 400 self._communicator_send(message_input.SerializeToString()) if self._socket is not None: self._socket.close() ...
module function_definition identifier parameters identifier block if_statement boolean_operator comparison_operator attribute identifier identifier none comparison_operator attribute identifier identifier none block expression_statement assignment identifier call identifier argument_list expression_statement assignment...
Sends a shutdown signal to the unity environment, and closes the socket connection.
def _jtime(self, timestamp): if isinstance(timestamp, datetime): timestamp = time.mktime(timestamp.timetuple()) return self._sc._jvm.Time(long(timestamp * 1000))
module function_definition identifier parameters identifier identifier block if_statement call identifier argument_list identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list return_statement call attri...
Convert datetime or unix_timestamp into Time
def _delete(self, url, **kwargs): response = retry_request(self)(self._http_delete)(url, **kwargs) if self.raw_mode: return response if response.status_code >= 300: error = get_error(response) if self.raise_errors: raise error retur...
module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call call call identifier argument_list identifier argument_list attribute identifier identifier argument_list identifier dictionary_splat identifier if_statement a...
Wrapper for the HTTP DELETE request.
def sqlalch_datetime(dt): if isinstance(dt, str): return datetime.strptime(dt, "%Y-%m-%d %H:%M:%S.%f").replace(tzinfo=UTC) if dt.tzinfo is not None and dt.tzinfo.utcoffset(dt) is not None: return dt.astimezone(UTC) return dt.replace(tzinfo=UTC)
module function_definition identifier parameters identifier block if_statement call identifier argument_list identifier identifier block return_statement call attribute call attribute identifier identifier argument_list identifier string string_start string_content string_end identifier argument_list keyword_argument i...
Convert a SQLAlchemy datetime string to a datetime object.
def cd_previous(self): if self._prev_dir is None or isinstance(self._prev_dir, ROOT.TROOT): return False if isinstance(self._prev_dir, ROOT.TFile): if self._prev_dir.IsOpen() and self._prev_dir.IsWritable(): self._prev_dir.cd() return True ...
module function_definition identifier parameters identifier block if_statement boolean_operator comparison_operator attribute identifier identifier none call identifier argument_list attribute identifier identifier attribute identifier identifier block return_statement false if_statement call identifier argument_list a...
cd to the gDirectory before this file was open.
def _handle_tag_salt_error(self, tag, data): if self.connected: log.debug('Forwarding salt error event tag=%s', tag) self._fire_master(data, tag)
module function_definition identifier parameters identifier identifier identifier block if_statement attribute identifier identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement call attribute identifier ident...
Handle a _salt_error event
def principal_direction_extents(neurites, neurite_type=NeuriteType.all, direction=0): def _pde(neurite): points = neurite.points[:, :3] return morphmath.principal_direction_extent(points)[direction] return map(_pde, iter_neurites(neurites, filt=is_type(neurite_type)))
module function_definition identifier parameters identifier default_parameter identifier attribute identifier identifier default_parameter identifier integer block function_definition identifier parameters identifier block expression_statement assignment identifier subscript attribute identifier identifier slice slice ...
Principal direction extent of neurites in neurons
def unparse_signature(signature) : "converts a signature from parsed form to string form." signature = parse_signature(signature) if not isinstance(signature, (tuple, list)) : signature = [signature] return \ DBUS.Signature("".join(t.signature for t in signature))
module function_definition identifier parameters identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier if_statement not_operator call identifier argument_list identifier tuple identifier identifier block ex...
converts a signature from parsed form to string form.
def runSearchVariantAnnotations(self, request): return self.runSearchRequest( request, protocol.SearchVariantAnnotationsRequest, protocol.SearchVariantAnnotationsResponse, self.variantAnnotationsGenerator)
module function_definition identifier parameters identifier identifier block return_statement call attribute identifier identifier argument_list identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier
Runs the specified SearchVariantAnnotationsRequest.
def section_volumes(neurites, neurite_type=NeuriteType.all): return map_sections(sectionfunc.section_volume, neurites, neurite_type=neurite_type)
module function_definition identifier parameters identifier default_parameter identifier attribute identifier identifier block return_statement call identifier argument_list attribute identifier identifier identifier keyword_argument identifier identifier
section volumes in a collection of neurites
def go_up(self): vsb = self.scrollarea.verticalScrollBar() vsb.setValue(int(vsb.value() - vsb.singleStep()))
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list expression_statement call attribute identifier identifier argument_list call identifier argument_list binary_operator call attribute identi...
Scroll the scrollbar of the scrollarea up by a single step.
def qn_df(df, axis='row', keep_orig=False): df_qn = {} for mat_type in df: inst_df = df[mat_type] if axis == 'row': inst_df = inst_df.transpose() missing_values = inst_df.isnull().values.any() if missing_values: missing_mask = pd.isnull(inst_df) inst_df = inst_df.fillna(value=0) ...
module function_definition identifier parameters identifier default_parameter identifier string string_start string_content string_end default_parameter identifier false block expression_statement assignment identifier dictionary for_statement identifier identifier block expression_statement assignment identifier subsc...
do quantile normalization of a dataframe dictionary, does not write to net
def _read_datasets(self, dataset_nodes, **kwargs): reader_datasets = {} for node in dataset_nodes: ds_id = node.name if ds_id in self.datasets or not isinstance(node.data, dict): continue reader_name = node.data.get('reader_name') if reader...
module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block expression_statement assignment identifier dictionary for_statement identifier identifier block expression_statement assignment identifier attribute identifier identifier if_statement boolean_operator compar...
Read the given datasets from file.
def _is_postgres(self): if self._is_postgres_engine is None: is_postgres_engine = False try: dialect = self.session.bind.engine.name if 'redshift' in dialect or 'postg' in dialect or 'pg' in \ dialect: is_postgre...
module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier none block expression_statement assignment identifier false try_statement block expression_statement assignment identifier attribute attribute attribute attribute identifier identifier iden...
Determine if the running engine is postgres
def setbpf(self, bpf): self._bpf = min(bpf, self.BPF) self._rng_n = int((self._bpf + self.RNG_RANGE_BITS - 1) / self.RNG_RANGE_BITS)
module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier call identifier argument_list identifier attribute identifier identifier expression_statement assignment attribute identifier identifier call identifier argument_list binary_opera...
Set number of bits per float output
def construct_oauth_url(self): response = self._requester(requests.head, "{0}://{1}/".format(self.protocol, self.client.server), allow_redirects=False ) if response.is_redirect: server = ...
module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier attribute ...
Constructs verifier OAuth URL
def edit_finished(self): self.hide() if isinstance(self.tab_index, int) and self.tab_index >= 0: tab_text = to_text_string(self.text()) self.main.setTabText(self.tab_index, tab_text) self.main.sig_change_name.emit(tab_text)
module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list if_statement boolean_operator call identifier argument_list attribute identifier identifier identifier comparison_operator attribute identifier identifier integer block expression_st...
On clean exit, update tab name.
def _create_figure(self): if get_option('close_all_figures'): plt.close('all') figure = plt.figure() axs = self.facet.make_axes( figure, self.layout.layout, self.coordinates) figure._themeable = {} self.figure = figure self....
module function_definition identifier parameters identifier block if_statement call identifier argument_list string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifie...
Create Matplotlib figure and axes
def attrs(self) -> Mapping: if self._attrs is None: self._attrs = OrderedDict() return self._attrs
module function_definition identifier parameters identifier type identifier block if_statement comparison_operator attribute identifier identifier none block expression_statement assignment attribute identifier identifier call identifier argument_list return_statement attribute identifier identifier
Dictionary of global attributes on this dataset
def _find_filepath_in_roots(filename): for root in settings.DJANGO_STATIC_MEDIA_ROOTS: filepath = _filename2filepath(filename, root) if os.path.isfile(filepath): return filepath, root if settings.DEBUG: try: from django.contrib.staticfiles import finders ...
module function_definition identifier parameters identifier block for_statement identifier attribute identifier identifier block expression_statement assignment identifier call identifier argument_list identifier identifier if_statement call attribute attribute identifier identifier identifier argument_list identifier ...
Look for filename in all MEDIA_ROOTS, and return the first one found.
def create_instance(self, application, revision=None, environment=None, name=None, parameters=None, submodules=None, destroyInterval=None, manifestVersion=None): from qubell.api.private.instance import Instance return Instance.new(self._router, application, revision, environment,...
module function_definition identifier parameters identifier identifier default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none default_parameter identifier none block impor...
Launches instance in application and returns Instance object.
def update(self) -> None: for source_old in self: if isinstance(source_old, RemoteSource): repo = git.Repo(source_old.location) origin = repo.remotes.origin origin.pull() sha = repo.head.object.hexsha version = repo.git....
module function_definition identifier parameters identifier type none block for_statement identifier identifier block if_statement call identifier argument_list identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier expre...
Ensures that all remote sources are up-to-date.
def tag_value(func): def inner(self): tag, attrib, attrib_type = func(self) tag_obj = self.et.find(tag) if tag_obj is not None: try: return attrib_type(self.et.find(tag).attrib[attrib]) except KeyError: raise AttributeError return i...
module function_definition identifier parameters identifier block function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier identifier call identifier argument_list identifier expression_statement assignment identifier call attribute attribute identifi...
Decorator used to declare that the property is attribute of embedded tag
def set(self, dct) : for field, value in dct.items() : if field not in self.collection.arangoPrivates : if isinstance(value, dict) : if field in self.validators and isinstance(self.validators[field], dict): vals = self.validators[field] ...
module function_definition identifier parameters identifier identifier block for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block if_statement comparison_operator identifier attribute attribute identifier identifier identifier block if_statement call identifier argum...
Set the store using a dictionary
def parse(self, text): token_stream = self.lexer.tokenize(text) return self.expr(token_stream, next(token_stream))
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier return_statement call attribute identifier identifier argument_list identifier call identifier argument_list identifi...
Parse the given text, return a list of Keywords.
def add_namespaces(metadata, namespaces): for key, value in metadata.items(): if key not in namespaces: namespaces[key] = value elif namespaces[key] != value: raise validate.ValidationException( "Namespace prefix '{}' has conflicting definitions '{}'" ...
module function_definition identifier parameters identifier identifier block for_statement pattern_list identifier identifier call attribute identifier identifier argument_list block if_statement comparison_operator identifier identifier block expression_statement assignment subscript identifier identifier identifier e...
Collect the provided namespaces, checking for conflicts.
def wrap_options(self, data, renderer_context): request = renderer_context.get("request", None) method = request and getattr(request, 'method') if method != 'OPTIONS': raise WrapperNotApplicable("Request method must be OPTIONS") wrapper = self.dict_class() wrapper["me...
module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end none expression_statement assignment identifier boolean_operator identifier call identifier ...
Wrap OPTIONS data as JSON API meta value
def aggregate(cls, pipeline=None, **kwargs): return list(cls.collection.aggregate(pipeline or [], **kwargs))
module function_definition identifier parameters identifier default_parameter identifier none dictionary_splat_pattern identifier block return_statement call identifier argument_list call attribute attribute identifier identifier identifier argument_list boolean_operator identifier list dictionary_splat identifier
Returns the document dicts returned from the Aggregation Pipeline
def getMaxWidth(self, rows): 'Return the maximum length of any cell in column or its header.' w = 0 if len(rows) > 0: w = max(max(len(self.getDisplayValue(r)) for r in rows), len(self.name))+2 return max(w, len(self.name))
module function_definition identifier parameters identifier identifier block expression_statement string string_start string_content string_end expression_statement assignment identifier integer if_statement comparison_operator call identifier argument_list identifier integer block expression_statement assignment ident...
Return the maximum length of any cell in column or its header.
def enforce_reversible_on_closed(P): import msmtools.analysis as msmana n = np.shape(P)[0] Prev = P.copy() sets = closed_sets(P) for s in sets: I = np.ix_(s, s) pi_s = msmana.stationary_distribution(P[I]) X_s = pi_s[:, None] * P[I] X_s = 0.5 * (X_s + X_s.T) Pr...
module function_definition identifier parameters identifier block import_statement aliased_import dotted_name identifier identifier identifier expression_statement assignment identifier subscript call attribute identifier identifier argument_list identifier integer expression_statement assignment identifier call attrib...
Enforces transition matrix P to be reversible on its closed sets.
def clear_allow_repeat_items(self): if (self.get_allow_repeat_items_metadata().is_read_only() or self.get_allow_repeat_items_metadata().is_required()): raise NoAccess() self.my_osid_object_form._my_map['allowRepeatItems'] = \ bool(self._allow_repeat_items_metadata...
module function_definition identifier parameters identifier block if_statement parenthesized_expression boolean_operator call attribute call attribute identifier identifier argument_list identifier argument_list call attribute call attribute identifier identifier argument_list identifier argument_list block raise_state...
reset allow repeat itmes to default value
def instagram_config(self, id, secret, scope=None, **_): scope = scope if scope else 'basic' token_params = dict(scope=scope) config = dict( access_token_url='/oauth/access_token/', authorize_url='/oauth/authorize/', base_url='https://api.instagram.com/', ...
module function_definition identifier parameters identifier identifier identifier default_parameter identifier none dictionary_splat_pattern identifier block expression_statement assignment identifier conditional_expression identifier identifier string string_start string_content string_end expression_statement assignm...
Get config dictionary for instagram oauth
def getProjectDescriptor(self, dir): for project in glob.glob(os.path.join(dir, '*.uproject')): return os.path.realpath(project) raise UnrealManagerException('could not detect an Unreal project in the current directory')
module function_definition identifier parameters identifier identifier block for_statement identifier call attribute identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end block return_statement call attribute ...
Detects the .uproject descriptor file for the Unreal project in the specified directory
def runMkdir(self, _dir, **kwargs): return self.runRemoteCommand('mkdir', {'dir': _dir, 'logEnviron': self.logEnviron, }, **kwargs)
module function_definition identifier parameters identifier identifier dictionary_splat_pattern identifier block return_statement call attribute identifier identifier argument_list string string_start string_content string_end dictionary pair string string_start string_content string_end identifier pair string string_s...
create a directory and its parents
def _apply_columns(self, func): new_data = {col: func(series) for col, series in self.items()} return self._constructor( data=new_data, index=self.index, columns=self.columns, default_fill_value=self.default_fill_value).__finalize__(self)
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary_comprehension pair identifier call identifier argument_list identifier for_in_clause pattern_list identifier identifier call attribute identifier identifier argument_list return_statement c...
Get new SparseDataFrame applying func to each columns
def _soln2str(self, soln, fancy=False): chars = list() for r in range(1, 10): for c in range(1, 10): if fancy and c in (4, 7): chars.append("|") chars.append(self._get_val(soln, r, c)) if fancy and r != 9: chars....
module function_definition identifier parameters identifier identifier default_parameter identifier false block expression_statement assignment identifier call identifier argument_list for_statement identifier call identifier argument_list integer integer block for_statement identifier call identifier argument_list int...
Convert a Sudoku solution point to a string.
def unfolding(tens, i): return reshape(tens.full(), (np.prod(tens.n[0:(i+1)]), -1))
module function_definition identifier parameters identifier identifier block return_statement call identifier argument_list call attribute identifier identifier argument_list tuple call attribute identifier identifier argument_list subscript attribute identifier identifier slice integer parenthesized_expression binary_...
Compute the i-th unfolding of a tensor.
def assign_qualification(self, qualification_id, worker_id, score, notify=False): return self._is_ok( self.mturk.associate_qualification_with_worker( QualificationTypeId=qualification_id, WorkerId=worker_id, IntegerValue=score, SendNoti...
module function_definition identifier parameters identifier identifier identifier identifier default_parameter identifier false block return_statement call attribute identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list keyword_argument identifier identifier keyword...
Score a worker for a specific qualification
def clean(ctx, text): text = conversions.to_string(text, ctx) return ''.join([c for c in text if ord(c) >= 32])
module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier return_statement call attribute string string_start string_end identifier argument_list list_comprehension identifier for_in_cl...
Removes all non-printable characters from a text string
def wr_row_mergeall(self, worksheet, txtstr, fmt, row_idx): hdridxval = len(self.hdrs) - 1 worksheet.merge_range(row_idx, 0, row_idx, hdridxval, txtstr, fmt) return row_idx + 1
module function_definition identifier parameters identifier identifier identifier identifier identifier block expression_statement assignment identifier binary_operator call identifier argument_list attribute identifier identifier integer expression_statement call attribute identifier identifier argument_list identifie...
Merge all columns and place text string in widened cell.