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def describe_partitioner(self, ): self._seqid += 1 d = self._reqs[self._seqid] = defer.Deferred() self.send_describe_partitioner() return d
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returns the partitioner used by this cluster
def check_config_integrity(self): tasks_by_hash = {_hash_task(t): t for t in self.config_tasks} if len(tasks_by_hash) != len(self.config_tasks): raise Exception("Fatal error: there was a hash duplicate in the scheduled tasks config.") for h, task in tasks_by_hash.items(): ...
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Make sure the scheduler config is valid
def parse_compound(self): compound_tag = Compound() for token in self.collect_tokens_until('CLOSE_COMPOUND'): item_key = token.value if token.type not in ('NUMBER', 'STRING', 'QUOTED_STRING'): raise self.error(f'Expected compound key but got {item_key!r}') ...
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Parse a compound from the token stream.
def domain_whois(self, domain): uri = self._uris["whois_domain"].format(domain) resp_json = self.get_parse(uri) return resp_json
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Gets whois information for a domain
def capture_exception(fn): def wrapped(*args): try: return fn(*args) except Exception as e: return e return wrapped
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decorator that catches and returns an exception from wrapped function
def from_string(cls, line, ignore_bad_cookies=False, ignore_bad_attributes=True): "Construct a Cookie object from a line of Set-Cookie header data." cookie_dict = parse_one_response( line, ignore_bad_cookies=ignore_bad_cookies, ignore_bad_attributes=ignore_bad...
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Construct a Cookie object from a line of Set-Cookie header data.
def __zipped_files_data(self): files = {} with zipfile.ZipFile(self.__zip_file) as thezip: for zipinfo in thezip.infolist(): if zipinfo.filename.endswith('metadata/icons.json'): with thezip.open(zipinfo) as compressed_file: files['i...
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Get a dict of all files of interest from the FA release zipfile.
def reduce_l1(attrs, inputs, proto_obj): new_attrs = translation_utils._fix_attribute_names(attrs, {'axes':'axis'}) new_attrs = translation_utils._add_extra_attributes(new_attrs, {'ord' : 1}) return 'norm', new_attrs, inputs
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Reduce input tensor by l1 normalization.
def clean_cookie(self): if not self.is_cookie_necessary: return self headers = self.request.get('headers', {}) cookies = SimpleCookie(headers['Cookie']) for k, v in cookies.items(): new_cookie = '; '.join( [i.OutputString() for i in cookies.values(...
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Only clean the cookie from headers and return self.
def _find_keys(self, identity='image'): prefix = add_prefix('', identity) raw_keys = self._find_keys_raw(prefix) or [] for raw_key in raw_keys: yield del_prefix(raw_key)
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Finds and returns all keys for identity,
def extra(request, provider): identity = request.session.get('identity', None) if not identity: raise Http404 if request.method == "POST": form = str_to_class(settings.EXTRA_FORM)(request.POST) if form.is_valid(): user = form.save(request, identity, provider) ...
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Handle registration of new user with extra data for profile
def _get_primary_type(ttypes, parent, logstream=stderr): if len(ttypes) > 1: if logstream: message = '[tag::transcript::primary_transcript]' message += ' WARNING: feature {:s}'.format(parent.slug) message += ' has multiple associated transcript types' message ...
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Check for multiple transcript types and, if possible, select one.
def toString(self) -> str: return ' '.join(attr.html for attr in self._dict.values())
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Return string representation of collections.
def reapply_sampling_strategies(self): check_sensor = self._inspecting_client.future_check_sensor for sensor_name, strategy in list(self._strategy_cache.items()): try: sensor_exists = yield check_sensor(sensor_name) if not sensor_exists: se...
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Reapply all sensor strategies using cached values
def ask_password(*question: Token) -> str: tokens = get_ask_tokens(question) info(*tokens) answer = read_password() return answer
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Ask the user to enter a password.
def resources(self): used_resources = self._used_resources() ret = collections.defaultdict(dict) for resource, total in six.iteritems(self._resources): ret[resource]['total'] = total if resource in used_resources: ret[resource]['used'] = used_resources[res...
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get total resources and available ones
def warning(self, msg, *args, **kwargs): self._log("WARNING", msg, args, kwargs)
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Log 'msg % args' with the warning severity level
def encode_value_using_ma(message_attribute: int, value: Optional[Union[int, float]]) -> int: if message_attribute == MA_TX3AC_100A: if value is None: return 0xfe return int(value) elif message_attribute == MA_TX3AC_10A: if value is None: return 0xfe retur...
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Encode special sensor value using the message attribute.
def homogeneous_poisson(self): return (1. - 2. / 3. * self.g_vrh / self.k_vrh) / \ (2. + 2. / 3. * self.g_vrh / self.k_vrh)
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returns the homogeneous poisson ratio
def paragraph_spans(self): if not self.is_tagged(PARAGRAPHS): self.tokenize_paragraphs() return self.spans(PARAGRAPHS)
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The list of spans representing ``paragraphs`` layer elements.
def _build_url(*args, **kwargs) -> str: resource_url = API_RESOURCES_URLS for key in args: resource_url = resource_url[key] if kwargs: resource_url = resource_url.format(**kwargs) return urljoin(URL, resource_url)
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Return a valid url.
def transformer_base_v3(): hparams = transformer_base_v2() hparams.optimizer_adam_beta2 = 0.997 hparams.learning_rate_schedule = ( "constant*linear_warmup*rsqrt_decay*rsqrt_hidden_size") hparams.learning_rate_constant = 2.0 return hparams
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Base parameters for Transformer model.
def lookup(ctx, number, comment, cache): phone = PhoneNumber(number, comment=comment) info('{0} | {1}'.format(phone.number, ctx.obj['config']['lookups'].keys())) if phone.number in ctx.obj['config']['lookups']: info('{0} is already cached:'.format(phone.number)) info(jsonify(ctx.obj['config'...
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Get the carrier and country code for a phone number
def emit_metadata_for_region_py(self, region, region_filename, module_prefix): terrobj = self.territory[region] with open(region_filename, "w") as outfile: prnt(_REGION_METADATA_PROLOG % {'region': terrobj.identifier(), 'module': module_prefix}, file=outfile) prnt("PHONE_METADATA...
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Emit Python code generating the metadata for the given region
def readBimFile(basefilename): bim_fn = basefilename+'.bim' rv = SP.loadtxt(bim_fn,delimiter='\t',usecols = (0,3),dtype=int) return rv
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Helper fuinction that reads bim files
def combobox_set_model_from_list(cb, items): cb.clear() model = gtk.ListStore(str) for i in items: model.append([i]) cb.set_model(model) if type(cb) == gtk.ComboBoxEntry: cb.set_text_column(0) elif type(cb) == gtk.ComboBox: cell = gtk.CellRendererText() cb.pack_st...
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Setup a ComboBox or ComboBoxEntry based on a list of strings.
def _setse(self, i): if i > 0: u = (i * 2) - 1 else: u = -2 * i self._setue(u)
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Initialise bitstring with signed exponential-Golomb code for integer i.
def import_from_string(full_class_name): s = full_class_name.split('.') class_name = s[-1] module_name = full_class_name[:-len(class_name)-1] module = importlib.import_module(module_name) klass = getattr(module, class_name) return klass
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return a class based on it's full class name
def _show_psrs(): sep = os.linesep types = "Supported types: " + ", ".join(API.list_types()) cids = "IDs: " + ", ".join(c for c, _ps in API.list_by_cid()) x_vs_ps = [" %s: %s" % (x, ", ".join(p.cid() for p in ps)) for x, ps in API.list_by_extension()] exts = "File extensions:" + sep ...
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Show list of info of parsers available
def info_1(*tokens: Token, **kwargs: Any) -> None: info(bold, blue, "::", reset, *tokens, **kwargs)
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Print an important informative message
def visit_num(self, node, parent): return nodes.Const( node.n, getattr(node, "lineno", None), getattr(node, "col_offset", None), parent, )
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visit a Num node by returning a fresh instance of Const
def specialRound(number, rounding): temp = 0 if rounding == 0: temp = number else: temp = round(number, rounding) if temp % 1 == 0: return int(temp) else: return float(temp)
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A method used to round a number in the way that UsefulUtils rounds.
def load_projects(self): server_config = Config.instance().get_section_config("Server") projects_path = os.path.expanduser(server_config.get("projects_path", "~/GNS3/projects")) os.makedirs(projects_path, exist_ok=True) try: for project_path in os.listdir(projects_path): ...
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Preload the list of projects from disk
def _set_element_property(parent_to_parse, element_path, prop_name, value): element = get_element(parent_to_parse) if element is None: return None if element_path and not element_exists(element, element_path): element = insert_element(element, 0, element_path) if not isinstance(value, st...
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Assigns the value to the parsed parent element and then returns it
def kernel(self): stop_words = [ y.lower() for y in self.abbreviations.values() + self.filler_words ] kernel = ' '.join([ x for x in self.expand().split() if x.lower() not in stop_words ]) kernel = re.sub(r'\s*United States', '', kernel) return kernel
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The 'kernel' is an attempt to get at just the most pithy words in the name
def to_file_mode(self): for message_no in range(len(self.messages)): self.__to_file(message_no)
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Write all the messages to files
def _won_in(self): if not self._summary['finished']: return starting_age = self._summary['settings']['starting_age'].lower() if starting_age == 'post imperial': starting_age = 'imperial' ages_reached = set([starting_age]) for player in self._summary['playe...
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Get age the game was won in.
def _get_goslimids_norel(self, dagslim): go_slims = set() go2obj = self.gosubdag.go2obj for goid in dagslim: goobj = go2obj[goid] if not goobj.relationship: go_slims.add(goobj.id) return go_slims
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Get all GO slim GO IDs that do not have a relationship.
def cli(ctx, project_dir): exit_code = SCons(project_dir).verify() ctx.exit(exit_code)
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Verify the verilog code.
def list_commands(self, ctx): rv = defaults.list_commands(ctx) if self._commands_dir: for filename in os.listdir(self._commands_dir): if _is_command_file(filename) and filename[:-3] not in rv: rv.append(filename[:-3]) rv.sort() return r...
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List commands from the commands dir and default group
def close(self): if self._device is not None: ibsta = self._lib.ibonl(self._device, 0) self._check_status(ibsta) self._device = None
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Closes the gpib transport.
def _normalize_branch_node(self, node): not_blank_items_count = sum(1 for x in range(17) if node[x]) assert not_blank_items_count >= 1 if not_blank_items_count > 1: self._encode_node(node) return node not_blank_index = [i for i, item in enumerate(node) if item][0]...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_normalize_branch_node'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [],...
node should have only one item changed
def remove_server(self, name): for i in self._server_list: if i['key'] == name: try: self._server_list.remove(i) logger.debug("Remove server %s from the list" % name) logger.debug("Updated servers list (%s servers): %s" % ( ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'remove_server'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
Remove a server from the dict.
def close(self): self.fire(JSONStreamer.DOC_END_EVENT) self._stack = None self._parser.close()
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'close'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'i...
Closes the streamer which causes a `DOC_END_EVENT` to be fired and frees up memory used by yajl
def _collected_label(collect, label): if not collect.__name__.startswith('<'): return label + ' ' + collect.__name__ else: return label
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_collected_label'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'valu...
Label of a collected column.
def canonical_name(sgf_name): sgf_name = os.path.normpath(sgf_name) assert sgf_name.endswith('.sgf'), sgf_name sgf_name = sgf_name[:-4] with_folder = re.search(r'/([^/]*/eval/.*)', sgf_name) if with_folder: return with_folder.group(1) return os.path.basename(sgf_name)
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'canonical_name'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'sg...
Keep filename and some date folders
def which(cmd, path="PATH"): if os.path.exists(cmd): return cmd if cmd[0] == '/': return None for segment in os.getenv(path).split(":"): program = os.path.normpath(os.path.join(segment, cmd)) if os.path.exists(program): return program return None
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'which'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cmd'};...
Find cmd on PATH.
def from_module(self, path): bundles = PythonLoader(path).load_bundles() for name in bundles: self.register(name, bundles[name])
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'from_module'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': '...
Register bundles from a Python module
def __install_ssh_config(self, config): if not config.is_affirmative('use_global_ssh', default="no"): ssh_config_injection = self._build_ssh_config(config) if not os.path.exists(ssh_config_path): if self.injections.in_noninjected_file(ssh_config_path, "Host %s" % config.g...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '__install_ssh_config'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], '...
Install the ssh configuration
def _get_release_params(): release_name = request.form.get('release_name') utils.jsonify_assert(release_name, 'release_name required') release_number = request.form.get('release_number', type=int) utils.jsonify_assert(release_number is not None, 'release_number required') return release_name, releas...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_release_params'}; {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '16', '24', '...
Gets the release params from the current request.
async def get_alarms(self): url = '{}{}'.format(self.base_url, self.endpoint) try: with async_timeout.timeout(5, loop=self._loop): response = await self._session.get(url) _LOGGER.debug( "Response from Netdata: %s", response.status) data...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_alarms'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}...
Get alarms for a Netdata instance.
def readline(self) -> bytes: assert self._state == ConnectionState.created, \ 'Expect conn created. Got {}.'.format(self._state) with self._close_timer.with_timeout(): data = yield from \ self.run_network_operation( self.reader.readline(), ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'readline'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'sel...
Read a line of data.
def host_context(func): "Sets the context of the setting to the current host" @wraps(func) def decorator(*args, **kwargs): hosts = get_hosts_settings() with settings(**hosts[env.host]): return func(*args, **kwargs) return decorator
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'host_context'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'func...
Sets the context of the setting to the current host
def metadata(self): from sqlalchemy import MetaData metadata = MetaData(bind=self.engine, schema=self._schema) metadata.reflect(self.engine) return metadata
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'metadata'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; ...
Return an SqlAlchemy MetaData object, bound to the engine.
def automeshgrid( x, y, step=0.02, xstep=None, ystep=None, pad=0.5, xpad=None, ypad=None ): if xpad is None: xpad = pad if xstep is None: xstep = step if ypad is None: ypad = pad if ystep is None: ystep = step xmin = x.min() - xpad xmax = x.max() + xpad ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '24']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'automeshgrid'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18', '21']}; {'id': '4', 'type': 'ide...
Make a meshgrid, inferred from data.
def parse_leehom_logs(self, f): regexes = { 'total': r"Total reads[\s\:]+(\d+)", 'merged_trimming': r"Merged \(trimming\)\s+(\d+)", 'merged_overlap': r"Merged \(overlap\)\s+(\d+)", 'kept': r"Kept PE/SR\s+(\d+)", 'trimmed': r"Trimmed SR\s+(\d+)", ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_leehom_logs'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'val...
Go through log file looking for leehom output
def stop(self): if self._timer: self._timer.stop() self._timer.deleteLater()
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'stop'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id...
Stop the current timer if there is one and cancel the async call.
def add_scope(self, scope_type, scope_name, scope_start, is_method=False): if self._curr is not None: self._curr['end'] = scope_start - 1 self._curr = { 'type': scope_type, 'name': scope_name, 'start': scope_start, 'end': scope_start } if is_method and...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_scope'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': ...
we identified a scope and add it to positions.
def length(self, t0=0, t1=1, error=None, min_depth=None): return abs(self.end - self.start)*(t1-t0)
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '17']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'length'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14']}; {'id': '4', 'type': 'identifier', 'children': [...
returns the length of the line segment between t0 and t1.
def unstruct_strat(self): return ( UnstructureStrategy.AS_DICT if self._unstructure_attrs == self.unstructure_attrs_asdict else UnstructureStrategy.AS_TUPLE )
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'unstruct_strat'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'se...
The default way of unstructuring ``attrs`` classes.
def secured_clipboard(item): expire_clock = time.time() def set_text(clipboard, selectiondata, info, data): if 15.0 >= time.time() - expire_clock: selectiondata.set_text(item.get_secret()) clipboard.clear() def clear(clipboard, data): pass targets = [("STRING", 0,...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'secured_clipboard'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': ...
This clipboard only allows 1 paste
def action(route, template='', methods=['GET']): def real_decorator(function): function.pi_api_action = True function.pi_api_route = route function.pi_api_template = template function.pi_api_methods = methods if hasattr(function, 'pi_api_crossdomain'): if not func...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'action'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': ...
Decorator to create an action
def destroy(self): result = self._result( ["heroku", "apps:destroy", "--app", self.name, "--confirm", self.name] ) return result
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'destroy'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {...
Destroy an app and all its add-ons
def send(self, message): serialized = message.SerializeToString() log_binary(_LOGGER, '>> Send', Data=serialized) if self._chacha: serialized = self._chacha.encrypt(serialized) log_binary(_LOGGER, '>> Send', Encrypted=serialized) data = write_variant(len(serialize...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'send'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'};...
Send message to device.
def remove_routes(self, item, routes): for route in routes: items = self._routes.get(route) try: items.remove(item) LOG.debug('removed item from route %s', route) except ValueError: pass if not items: ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'remove_routes'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'va...
Removes item from matching routes
def update(self): stats = self.get_init_value() if self.input_method == 'local': self.uptime = datetime.now() - datetime.fromtimestamp(psutil.boot_time()) stats = str(self.uptime).split('.')[0] elif self.input_method == 'snmp': uptime = self.get_stats_snmp(snm...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'update'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'...
Update uptime stat using the input method.
def _add_image(collection, image): image_prep = { 'id': image.id, 'name': image.name, 'created_at': image.created_at, 'file': image.file, 'min_disk': image.min_disk, 'min_ram': image.min_ram, 'owner': image.owner, 'prote...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_add_image'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'c...
Add image to given dictionary
def _find_in_columncollection(columns, name): for col in columns: if col.name == name or getattr(col, '_label', None) == name: return col return None
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_find_in_columncollection'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': ...
Find a column in a column collection by name or _label
async def _retransmit(self, sequence_number): packet = self.__rtp_history.get(sequence_number % RTP_HISTORY_SIZE) if packet and packet.sequence_number == sequence_number: if self.__rtx_payload_type is not None: packet = wrap_rtx(packet, paylo...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_retransmit'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': '...
Retransmit an RTP packet which was reported as lost.
def update_earthquake_info(self): self.label_earthquake_model() current_index = self.earthquake_function.currentIndex() model = EARTHQUAKE_FUNCTIONS[current_index] notes = '' for note in model['notes']: notes += note + '\n\n' citations = '' for citatio...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'update_earthquake_info'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'val...
Update information about earthquake info.
def check_status_logfile(self, checker_func): self.status = checker_func(self.logfile) return self.status
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'check_status_logfile'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], '...
Check on the status of this particular job using the logfile
def configure_logger(logger, filename, folder, log_level): fmt = logging.Formatter('%(asctime)s %(levelname)s: %(message)s') if folder is not None: log_file = os.path.join(folder, filename) hdl = logging.FileHandler(log_file) hdl.setFormatter(fmt) hdl.setLevel(log_level) ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'configure_logger'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children':...
Configure logging behvior for the simulations.
def dynamic_sum(values, limit_n=1000, acc=0, depth=4): if len(values) < limit_n: return acc + sum(values) if depth > 0: half = len(values) // 2 return add( dynamic_sum(values[:half], limit_n, acc, depth=depth-1), dynamic_sum(values[half:], limit_n, 0, depth=depth-...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'dynamic_sum'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': []...
Example of dynamic sum.
def _handle_tag_fileattributes(self): obj = _make_object("FileAttributes") bc = BitConsumer(self._src) bc.u_get(1) obj.UseDirectBlit = bc.u_get(1) obj.UseGPU = bc.u_get(1) obj.HasMetadata = bc.u_get(1) obj.ActionScript3 = bc.u_get(1) bc.u_get(2) ob...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_handle_tag_fileattributes'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], ...
Handle the FileAttributes tag.
def query_one(cls, *args, **kwargs): doc = cls._coll.find_one(*args, **kwargs) if doc: return cls.from_storage(doc)
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'query_one'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value'...
Same as collection.find_one, but return Document then dict
def _default_format(self, occur): if self.text or self.children: return self.start_tag() + "%s" + self.end_tag() return self.start_tag(empty=True)
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_default_format'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value...
Return the default serialization format.
def generate_moffat_profile(seeing_fwhm, alpha): scale = 2 * math.sqrt(2**(1.0 / alpha) - 1) gamma = seeing_fwhm / scale amplitude = 1.0 / math.pi * (alpha - 1) / gamma**2 seeing_model = Moffat2D(amplitude=amplitude, x_mean=0.0, y_mean=0.0, ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'generate_moffat_profile'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': []...
Generate a normalized Moffat profile from its FWHM and alpha
def encode_images_as_png(images): if tf.executing_eagerly(): for image in images: yield tf.image.encode_png(image).numpy() else: (height, width, channels) = images[0].shape with tf.Graph().as_default(): image_t = tf.placeholder(dtype=tf.uint8, shape=(height, width, channels)) encoded_i...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'encode_images_as_png'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value...
Yield images encoded as pngs.
def validate(collection, onerror: Callable[[str, List], None] = None): BioCValidator(onerror).validate(collection)
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'validate'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'co...
Validate BioC data structure.
def setup_hob(self): if self.m.hob is None: return hob_out_unit = self.m.hob.iuhobsv new_hob_out_fname = os.path.join(self.m.model_ws,self.m.get_output_attribute(unit=hob_out_unit)) org_hob_out_fname = os.path.join(self.org_model_ws,self.m.get_output_attribute(unit=hob_out_un...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'setup_hob'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'};...
setup observations from the MODFLOW HOB package
def _insert(self, key, records, count): if key not in self.records: assert key not in self.counts self.records[key] = records self.counts[key] = count else: self.records[key] = np.vstack((self.records[key], records)) assert key in self.counts ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_insert'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'val...
Insert records according to key
def parse_sam(sam, qual): for line in sam: if line.startswith('@'): continue line = line.strip().split() if int(line[4]) == 0 or int(line[4]) < qual: continue yield line
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parse sam file and check mapping quality
def chunkWidgets(self, group): ui_groups = [] subgroup = [] for index, item in enumerate(group['items']): if getin(item, ['options', 'full_width'], False): ui_groups.append(subgroup) ui_groups.append([item]) subgroup = [] ...
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chunk the widgets up into groups based on their sizing hints
def _check_arguments(self): if self.argument_checked: return assert(self.symbol is not None) self.argument_checked = True _check_arguments(self.symbol) if self.allow_extra_params: if self.arg_params: arg_names = set(self.symbol.list_argumen...
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verify the argument of the default symbol and user provided parameters
def prepare_file(filename): directory = os.path.join(utils.get_project_root(), "analyzation/") if not os.path.exists(directory): os.makedirs(directory) workfilename = os.path.join(directory, filename) open(workfilename, 'w').close() return workfilename
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Truncate the file and return the filename.
def _get_controller_type(self): if self.node_type == self.NODE_CONTROLLER_ROOT and self.name in self.CONTROLLERS: return self.name elif self.parent: return self.parent.controller_type else: return None
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Returns the current node's controller type
def _csr_matrix_indices(S): m, n = S.shape for i in range(m): for j in range(S.indptr[i], S.indptr[i+1]): row_index, col_index = i, S.indices[j] yield row_index, col_index
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Generate the indices of nonzero entries of a csr_matrix S
def arrows_at(self, x, y): for arrow in self.arrows(): if arrow.collide_point(x, y): yield arrow
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Iterate over arrows that collide the given point.
def imeicsum(text): digs = [] for i in range(14): v = int(text[i]) if i % 2: v *= 2 [digs.append(int(x)) for x in str(v)] chek = 0 valu = sum(digs) remd = valu % 10 if remd != 0: chek = 10 - remd return str(chek)
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Calculate the imei check byte.
def normalize_dictionary_values(dictionary): for key, val in dictionary.iteritems(): if isinstance(val, dict): dictionary[key] = normalize_dictionary_values(val) elif isinstance(val, list): dictionary[key] = list(val) else: dictionary[key] = normalize_valu...
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Normalizes the values in a dictionary recursivly.
def steady_connection(self): return SteadyPgConnection(self._maxusage, self._setsession, True, *self._args, **self._kwargs)
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Get a steady, unpooled PostgreSQL connection.
def redis(self): if self._redis is None: self._redis = redis.StrictRedis(host=self.args.redis_host, port=self.args.redis_port) return self._redis
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Return instance of Redis.
def example_clinical_data(study_name, environment): odm = ODM("test system")( ClinicalData("Mediflex", "DEV")( SubjectData("MDSOL", "IJS TEST4", transaction_type="Insert")( StudyEventData("SUBJECT")( FormData("EN", transaction_type="Update")( ItemGrou...
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Test demonstrating building clinical data
def position_scales(self): l = [s for s in self if ('x' in s.aesthetics) or ('y' in s.aesthetics)] return Scales(l)
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Return a list of the position scales that are present
def _get_adj_list_adjacency(self, umis, counts, threshold): adj_list = {umi: [] for umi in umis} if len(umis) > 25: umi_length = len(umis[0]) substr_idx = build_substr_idx(umis, umi_length, threshold) iter_umi_pairs = iter_nearest_neighbours(umis, substr_idx) ...
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identify all umis within hamming distance threshold
def _resume(self): try: self._cursor.close() except PyMongoError: pass self._cursor = self._create_cursor()
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Reestablish this change stream after a resumable error.
def zrem(self, key, member, *members): return self.execute(b'ZREM', key, member, *members)
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Remove one or more members from a sorted set.
def file_upload_to(self, instance, filename): ext = filename.split(".")[-1] filename = "{}.{}".format(uuid.uuid4(), ext) return os.path.join("document", filename)
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Callable passed to the FileField's upload_to kwarg on Document.file
def Forget(self, obj): obj = _get_idstr(obj) try: self.memo.remove(obj) except ValueError: pass
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Forget we've seen this object.
def roll(self): x, y, z, w = self.x, self.y, self.z, self.w return math.atan2(2*y*w - 2*x*z, 1 - 2*y*y - 2*z*z)
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Calculates the Roll of the Quaternion.