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Get the value of property `k` from function `f`. We define properties as annotations added to a function throughout the process of defining a function for verification, e.g. the argument types. If `f` does not have a property named `k`, this throws an error. If `f` has the property named `k`, it retu...
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Set a list of download requests Set a list of DownloadRequests for all images that are under the given property of the Geopedia's Vector layer. :param reset_gpd_iterator: When re-running the method this flag is used to reset/keep existing ``gpd_iterator`` (i.e. instance of ``Geoped...
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Generate keyword arguments for boto3 connection functions. If ``self.account_id`` is defined, this will call :py:meth:`~._get_sts_token` to get STS token credentials using `boto3.STS.Client.assume_role <https://boto3.readthedocs.org/en/ latest/reference/services/sts.html#STS.Client.assu...
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Helper method to parse command output for error information
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write out a file of transcript->gene mappings. use the installed tx2gene.csv if it exists, else write a new one out
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Generates an arbitrary value of one of the specified generators. This is a class factory, it makes a class which is a closure around the specified generators.
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Alternate constructor that accepts a string SemVer.
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Set the subscribed status of a folder.
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Calculate formula compositions for both sides of the specified reaction. If the compounds in the reaction all have formula, then calculate and return the chemical compositions for both sides, otherwise return `None`. Args: reaction: :class:`psamm.reaction.Reaction`. compound_formula: a map...
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Upload a record to the server. :param marcxml: the XML to upload. :param mode: the mode to use for the upload. - "-i" insert new records - "-r" replace existing records - "-c" correct fields of records - "-a" append fields to records - "-ir" i...
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Creates a SyntaxError-like message.
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Freezing the hub means that each topic has to be assigned and no new topics can be created after this point.
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Load a credential file as is setup like the Java utilities
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Removes a cached object based on the identifier. This method ignores the cache value reference count. Args: identifier (str): VFS object identifier. Raises: KeyError: if the VFS object is not found in the cache.
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Extracts custom query keys from the index. Parameters which get extracted from the request: `q`: Passes the value to the `SearchableText` `path`: Creates a path query `recent_created`: Creates a date query `recent_modified`: Creates a date query :param ...
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Remove a directory. Equivalent to "os.rmdir". Args: path (path-like object): Path or URL. dir_fd: directory descriptors; see the os.rmdir() description for how it is interpreted. Not supported on cloud storage objects.
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Gets current repository info from git
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After the toolchain and spec have been executed, this may be called to generate the artifact export entry for persistence into the metadata file.
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Returns a path of a child item represented by `fragment`.
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This function creates a reference, undistorted WCS that can be used to apply a correction to the WCS of the input file. Parameters ---------- filename : str Filename of image which will be corrected, and which will form the basis of the undistorted WCS. clean_wcs : bool Spe...
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Set up core modules.
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Create futures needed before starting the process of reading the address's value from the merkle tree. Args: addresses (list of str): addresses in the txn's inputs that aren't in any base context (or any in the chain).
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Test for whether a user is in a group. There is also the ability in the API to test for whether multiple users are members of an LDAP group, but you should just call is_user_in_group over an enumerated list of users. Args: user: String username. group: String gr...
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Add a permission for a subject. Args: subj_str : str Subject for which to add permission(s) perm_str : str Permission to add. Implicitly adds all lower permissions. E.g., ``write`` will also add ``read``.
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We must be able to interpret the args as as either a column name or row number, or sequences thereof. Numpy arrays and slices are also fine. Examples: 'field' 35 [35,55,86] ['f1',f2',...] Can also be tuples or arrays.
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Sort a column by its values
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convert a string to float
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Generate blocks of file's contents in reverse order.
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Handle incoming PUBCOMP packet.
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Method to enable or disable automatic capture, allowing you to simultaneously set the instance parameters.
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Copies the data in maps to the scratch space. If the maps contain arrays that are not the same shape as the scratch space, a new scratch space will be created.
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Replace logreg layer by sigmoid to get probabilities.
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Set the key on a protobuf Message or dictionary to a given value if the current value is falsy. Because protobuf Messages do not distinguish between unset values and falsy ones particularly well (by design), this method treats any falsy value (e.g. 0, empty list) as a target to be overwritten, on both ...
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Serialize the macaroon in JSON format indicated by the version field. @param macaroon the macaroon to serialize. @return JSON macaroon.
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Exponentiate columns of dataframe. Basically this function squares/cubes a column. e.g. df[col^2] = pow(df[col], degree) where degree=2. Parameters ---------- col : list(str) Column to exponentiate. degree : list(str) Exponentiation degree.
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Adapts the given registered resource to its configured repository. :return: object implementing :class:`everest.repositories.interfaces.IRepository`.
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add a field to the vector layer Parameters ---------- name: str the field name type: int the OGR Field Type (OFT), e.g. ogr.OFTString. See `Module ogr <https://gdal.org/python/osgeo.ogr-module.html>`_. width: int the width of the n...
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Asks the current host what version of LXC it has. Returns it as a string. If LXC is not installed, raises subprocess.CalledProcessError
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This function returns the url of the gif searched for with the given search parameters using the Giphy API. Thanks! Fails gracefully when it can't find a gif by returning an appropriate image url with the failure message on it.
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Decodes and returns the value in a region. Args: region (DmtxRegion): Yields: Decoded or None: The decoded value.
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Send an event to the remote. This will return the bytes to send based on the event or raise a LocalProtocolError if the event is not valid given the state.
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Spawn a thread, and join it after the context is over.
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Sets the stimulus model for the calibration curve test :param model: Stimulus model that has a tone curve configured :type model: :class:`StimulusModel <sparkle.stim.stimulus_model.StimulusModel>`
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Multiply `Tensors` in arbitrarily nested `Tensor` `nested_a` with `p`.
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Build a dominant flat five chord on note. Example: >>> dominant_flat_five('C') ['C', 'E', 'Gb', 'Bb']
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Presigns a get object request and provides a url Example: from datetime import timedelta presignedURL = presigned_get_object('bucket_name', 'object_name', timedelta(days=7)) pri...
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Facilitates testing this attack.
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Obtain bus arrival info in target stop. Args: stop_number (int): Stop number to query. lang (str): Language code (*es* or *en*). Returns: Status boolean and parsed response (list[Arrival]), or message string in case of error.
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This function just checks the first time in the SWSTAT channel to see if the filter was on, it doesn't check times beyond that. This is just for a first test on a small chunck of data. To read the SWSTAT bits, reference: https://dcc.ligo.org/DocDB/0107/T1300711/001/LIGO-T1300711-v1.pdf Bit 0-9 = Filt...
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Collect a duplicate-free list of all other Bokeh models referred to by this model, or by any of its references, etc, unless filtered-out by the provided callable. Iterate over ``input_values`` and descend through their structure collecting all nested ``Models`` on the go. Args: *discard (C...
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shortens string if longer than maxlen, appending ellipsis
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Check whether embedded-object-related parameters are ok.
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Returns a new instance with the current time to a different time. :param hour: The hour :type hour: int :param minute: The minute :type minute: int :param second: The second :type second: int :param microsecond: The microsecond :type microsecond: int ...
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Reload workspace metadata from firecloud. Workspace metadata is cached in the data attribute of a Workspace, and may become stale, requiring a refresh().
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Fit the PyNNDescent transformer to build KNN graphs with neighbors given by the dataset X. Parameters ---------- X : array-like, shape (n_samples, n_features) Sample data Returns ------- transformer : PyNNDescentTransformer The trained tr...
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Creates a generic auditing Event logging the changes between saves and the initial data in creates. Kwargs: code (str): The code to set the new Event to. Returns: Event: A new event with relevant info inserted into it
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Convert from a name, like 'ethfinex.eth', to a label, like 'ethfinex' If name is already a label, this should be a noop, except for converting to a string and validating the name syntax.
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Wrap this udf with a function and attach docstring from func
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Evaluate the given stream. :param stream: stream to be evaluated :param stream_name: stream name
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Wraps openjpeg library function opj_destroy_decompress.
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Display a single character on the display :type char: str or int :param char: Character to display
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Get the duration of the request response cycle is milliseconds. In case of negative duration 0 is returned.
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Return a view with the specified tags removed
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Obtains a signature for a `MetricValue` Args: mv (:class:`endpoints_management.gen.servicecontrol_v1_messages.MetricValue`): a MetricValue that's part of an operation Returns: string: a unique signature for that operation
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'processWhileRunning'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value'...
Run tasks until stopService is called.
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Delete all sessions in the pool.
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decode ASF_EXTENDED_CONTENT_DESCRIPTION_OBJECT values
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Configure this handler to re-dispatch events from another handler. This method configures this handler dispatch an event of type *event_type* whenever *originator* dispatches events of the same type or any of the types in *more_event_types*. Any arguments passed to the original even...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'set_window_user_pointer'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': []...
Sets the user pointer of the specified window. You may pass a normal python object into this function and it will be wrapped automatically. The object will be kept in existence until the pointer is set to something else or until the window is destroyed. Wrapper for: void glfwSetWindowUserPointer(GL...
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Validates a list of ids, raising a ResponseFailed error if invalid. Args: resource_id (list of str): The ids to validate Raises: ResponseFailed: The id was invalid, and a status of INVALID_ID will be sent with the response.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'log'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'va...
Show logs for a file.
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Update the lens
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Send a list of OffsetCommitRequests to the Kafka broker for the given consumer group. Args: group (str): The consumer group to which to commit the offsets payloads ([OffsetCommitRequest]): List of topic, partition, offsets to commit. fail_on_error (bool): Wheth...
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Some examples in the text2sql datasets use ID as a column reference to the column of a table which has a primary key. This causes problems if you are trying to constrain a grammar to only produce the column names directly, because you don't know what ID refers to. So instead of dealing with that, we just re...
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Helper to 'actual_name', above. Compute unique prefix used to distinguish this target from other targets with the same name which create different file.
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Return first occurrence matching f, otherwise None
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Gets edge vectors for the edge types in the adjacency matrix. Args: adjacency_matrix: A [batch, num_nodes, num_nodes] tensor of ints. num_edge_types: Number of different edge types depth: Number of channels name: a string Returns: A [batch, num_nodes, num_nodes, depth] vector of tensors
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Open the strawpoll in a browser. Can specify to open the main or results page. :param results: True/False
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Assert that an object is of type str.
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Returns a boolean index with True if the value is masked. Always has the same shape as the maksedArray.data, event if the mask is a single boolan.
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Parse the output from xmlsec to try to find out if the command was successfull or not. :param output: The output from Popen :return: A boolean; True if the command was a success otherwise False
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For each term from ``terms`` return its column index and sign, as assigned by FeatureHasher ``hasher``.
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Get a range of alphabetic characters.
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Return sequence length
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Get external network information Get the information about the external network, so that it can be used to create the hidden port, subnet, and network.
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Return True if the database exists, or for Sqlite, which will create the file on the first reference, the file has been initialized with the root config
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Add the paths in tree environ into the os environ This code goes through the tree environ and checks for existence in the os environ, then adds them Parameters: key (str): The section name to check against / add update (bool): If True, ov...
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Removes the `file_filters` from the internal state. `file_filters` can be a single object or an iterable.
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types module name.
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Compare if two nodes are equal.
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Encode the given data using base-64 :param data: :return: base-64 encoded string
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This function gets ans string as time or a DateTime objects and returns a string with the time formatted :param time: The time to process :type time: str/DateTime :param long_format: If True, return time in ling format :type portal_type: boolean/null :param time_only: If True, only returns tim...
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Check if the balance proof would overflow onchain.
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Start a beacon thread within this process if no beacon is currently running on this machine. In general this is called automatically when an attempt is made to advertise or discover. It might be convenient, though, to call this function directly if you want to have a process whose only job is t...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'build_output'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': ...
Squash self.out into string. Join every line in self.out with a new line and write the result to the output file.
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decorator that allows us to match by expression or by xpath for each transformation method
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Render as html.
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Return the current list of task types
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_element_child_info'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [],...
Get information from child elements of this elementas a list since order is important. Don't include signature tags. :param doc: XML element :param attr: Attribute to get from the elements, for example "tag" or "text".
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'version'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {...
The memcached "version" command. Returns: A string of the memcached version.