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{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'end_of_line'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'event...
Move to the end of the line.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'iterator'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; ...
Add the default language information to all returned objects.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_group'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value'...
Adds a group @type groupname: bytes @type statements: str
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '26']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'diagonal_line'}; {'id': '3', 'type': 'parameters', 'children': ['4', '7', '10', '11', '14', '17', '20', '23']}; {'id': '4', 'type': '...
Plot a diagonal line. Parameters ---------- xi : 1D array-like (optional) The x axis points. If None, taken from axis limits. Default is None. yi : 1D array-like The y axis points. If None, taken from axis limits. Default is None. ax : axis (optional) Axis to plot on. If non...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'decode'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': '...
Decode GNTP Message :param string data:
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'as_dict'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '10']}; {'id': '4', 'type': 'identifier', 'children': [], 'value'...
Sometimes we need to just represent the parameters as a dict, for instance when we pass them to PyTorch code. Parameters ---------- quiet: bool, optional (default = False) Whether to log the parameters before returning them as a dict. infer_type_and_cast : bool, opti...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_is_socket'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'c...
Check if the given stream is a socket.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_setting'}; {'id': '3', 'type': 'parameters', 'children': ['4', '6']}; {'id': '4', 'type': 'list_splat_pattern', 'children': ['5']}...
Get a setting and raise an appropriate user friendly error if the setting is not found.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_response'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'se...
Incoming datagrams are routed through an actor.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'walk'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'v...
Perform an SNMP walk on a given OID
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'init_word_db'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'val...
Initialize a database of words for the maker with the given name
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20', '28']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'blt'}; {'id': '3', 'type': 'parameters', 'children': ['4', '12']}; {'id': '4', 'type': 'typed_parameter', 'children': ['5', '6'...
Sort equations by dependence
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_debugGraph'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'...
internal util to print out contents of graph
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_log_line'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'li...
Parses a log line and returns it with more information :param line: str - A line from a bcbio-nextgen log :returns dict: A dictionary containing the line, if its a new step if its a Traceback or if the analysis is finished
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'draw'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'bo...
Draw a board to the terminal.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'reverse'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {...
Returns the sequence reversed. Note: This method uses deferred execution, but the whole source sequence is consumed once execution commences. Returns: The source sequence in reverse order. Raises: ValueError: If the Queryable is closed().
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'vector_str'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'valu...
Pretty-print the vector values.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_trigger'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; ...
Trigger all callbacks registered to this Future. This method is called internally by the batch once the batch completes. Args: message_id (str): The message ID, as a string.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'nearest_subpackage'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': []...
Given a package, find its nearest parent in all_packages.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'draw'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id...
Draw all the sprites in the system using their renderers. This method is convenient to call from you Pyglet window's on_draw handler to redraw particles when needed.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'remove_metadata_key'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [...
Removes the specified key from the object's metadata. If the key does not exist in the metadata, nothing is done.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'predecessors'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'val...
Returns the list of predecessors of a given node Parameters ---------- node : str The target node exclude_compressed : boolean If true, compressed nodes are excluded from the predecessors list Returns ------- list List of pre...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'normalize_result'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], ...
Interpret a chardet result.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'merge_tags'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value...
Merge two sets of tags into a new troposphere object Args: left (Union[dict, troposphere.Tags]): dictionary or Tags object to be merged with lower priority right (Union[dict, troposphere.Tags]): dictionary or Tags object to be merged with higher priority factory (typ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'create_exclude_rules'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value...
Creates the exlude rules
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'difference'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 's...
Return the difference of two or more sets as a new set. >>> from ngram import NGram >>> a = NGram(['spam', 'eggs']) >>> b = NGram(['spam', 'ham']) >>> list(a.difference(b)) ['eggs']
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'hasKey'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': '...
Return entries where the key is present. Example of use: >>> test = [ ... {"name": "Jim", "age": 18, "income": 93000, "wigs": 68 }, ... {"name": "Larry", "age": 18, "wigs": [3, 2, 9]}, ... {"name": "Joe", "age": 20, "income": None , "wigs": [...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sub_tags'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
Returns list of direct sub-records matching any tag name. Unlike :py:meth:`sub_tag` method this method does not support hierarchical paths and does not resolve pointers. :param str tags: Names of the sub-record tag :param kw: Keyword arguments, only recognized keyword is `follow` ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'createSQL'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value'...
For use with auto-committing statements such as CREATE TABLE or CREATE INDEX.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_dependants'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'pr...
Yield dependants of `project_name`.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'from_Suite'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 's...
Convert a mingus.containers.Suite to an ASCII tablature string, complete with headers. This function makes use of the Suite's title, subtitle, author, email and description attributes.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_create_trial_info'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'va...
Create information for given trial. Meta file will be loaded if exists, and the trial information will be saved in db backend. Args: expr_dir (str): Directory path of the experiment.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_span_kind_as_int'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], '...
Will retrieve the `span.kind` tag and return the appropriate integer value for the Instana backend or None if the tag is set to something we don't recognize. :param span: The span to search for the `span.kind` tag :return: Integer
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'render_filter'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
Produce formatted output from the raw data stream.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'spectrogram'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'val...
Calculate the magnitude spectrogram of a single-channel time-domain signal from the real frequency components of the STFT with a hanning window applied to each frame. The frame size and overlap between frames should be specified in number of samples.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'check_status_code'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'val...
Checks response.status_code is in codes. :param requests.request response: Requests response :param list codes: List of accepted codes or callable :raises: StatusCodeError if code invalid
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'init_centers_widths'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'v...
Initialize prior of centers and widths Returns ------- centers : 2D array, with shape [K, n_dim] Prior of factors' centers. widths : 1D array, with shape [K, 1] Prior of factors' widths.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'recv_blocking'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
Recieve data until msglen bytes have been received.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'result'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'...
Enters polling loop on OperationsClient.get_operation, and once Operation.done is true, then returns Operation.response if successful or throws GaxError if not successful. This method will wait up to timeout seconds. If the call hasn't completed in timeout seconds, then a RetryError wil...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'list_active_vms'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6...
Return a list of machine names for active virtual machine on the host, which are defined in the Vagrantfile at the indicated path. CLI Example: .. code-block:: bash salt '*' vagrant.list_active_vms cwd=/projects/project_1
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'upload'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15']}; {'id': '4', 'type': 'identifier', 'childre...
wraps upload function :param str/tuple/list picture: Path to picture as str or picture data. \ If data a tuple or list with the file name as str \ and data as byte object in that order. :param str resize: Aresolution in the folowing format: \ '80x80'(optional) ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'replace_entity_resource'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children...
Replace one entity in the model with another with the same links :param model: Versa model to be updated :param oldres: old/former resource IRI to be replaced :param newres: new/replacement resource IRI :return: None
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'check_compatibility'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'childr...
Test whether two histograms are considered compatible by the number of dimensions, number of bins along each axis, and optionally the bin edges. Parameters ---------- other : histogram A rootpy histogram check_edges : bool, optional (default=False) ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_single_file_info'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], '...
Gets last change time for a single file
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'fetch_objects'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
This methods is used to fetch models from a list of identifiers. Default implementation performs a bulk query on identifiers. Override this method to customize the objects retrieval.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'set_file_path'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
Set the file path that needs to be locked. :Parameters: #. filePath (None, path): The file that needs to be locked. When given and a lock is acquired, the file will be automatically opened for writing or reading depending on the given mode. If None is given, the locker...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'generate_cutD_genomic_CDR3_segs'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children':...
Add palindromic inserted nucleotides to germline V sequences. The maximum number of palindromic insertions are appended to the germline D segments so that delDl and delDr can index directly for number of nucleotides to delete from a segment. Sets the attribute cutV_gen...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_secondary_count'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'v...
Returns the number of secondary ARs of this AR
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'pad_to_size'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'valu...
This is similar to `pad`, except you specify the final shape of the array. Parameters ---------- data : ndarray Numpy array of any dimension and type. shape : tuple Final shape of padded array. Should be tuple of length ``data.ndim``. If it has to pad unevenly, it will pad one m...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_finalize_memory'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': '...
GRIDSS does not recommend setting memory between 32 and 48Gb. https://github.com/PapenfussLab/gridss#memory-usage
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'CreateTask'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 's...
Creates a task. Args: session_identifier (str): the identifier of the session the task is part of. Returns: Task: task attribute container.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'Runs'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id...
Return all the run names in the `EventMultiplexer`. Returns: ``` {runName: { scalarValues: [tagA, tagB, tagC], graph: true, meta_graph: true}} ```
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'write_sampler_metadata'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [],...
Adds writing ntemps to file.
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Permissions of the file. Can be "r-" (read-only), "-w" (write-only), "rw" (read-write) or "--" (no rights). :rtype: str
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'scan_django_settings'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], '...
Recursively scans Django settings for values that appear to be imported modules.
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Read line of text from the socket. Read a line of text (delimited by "\r\n") from the socket, and return that line along with any trailing characters read from the socket. Args: sock: Socket object, should be connected. buf: String, zero or more characters, returned from an earlier ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parameter_action'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children':...
Code executed after recognising a parameter
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Returns median of each column or row. Returns: A new QueryCompiler object containing the median of each column or row.
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Returns true and fills the event with the next event on the queue if there is one. If there are no events this method returns false. uncbVREvent should be the size in bytes of the VREvent_t struct
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Filter elements by visibility and enabled status. :param displayed: whether to filter out invisible elements :param enabled: whether to filter out disabled elements Returns: an :class:`ElementSelector`
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Selectively updates View information. Any parameters that are None (the default) are not applied in the update. Args: friendly_name: if not None, the new friendly name. description: if not None, the new description. query: if not None, a new query string for the View.
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Return index of the render window given a location index. Parameters ---------- loc : int, tuple, or list Index of the renderer to add the actor to. For example, ``loc=2`` or ``loc=(1, 1)``. Returns ------- idx : int Index of the ren...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'patch_func'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value...
Patch func_name in target_mod with replacement Important - original must be resolved by name to avoid patching an already patched function.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'delete_project'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value'...
Delete a project from the Gitlab server Gitlab currently returns a Boolean True if the deleted and as such we return an empty Dictionary :param id: The ID of the project or NAMESPACE/PROJECT_NAME :return: Dictionary :raise: HttpError: If invalid response returned
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'update_parameters'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [],...
Updates parameters using the gradient descent update rule given above Arguments: parameters -- python dictionary containing your parameters grads -- python dictionary containing your gradients Returns: parameters -- python dictionary containing your updated parameters
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_areadist'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '11', '14', '17']}; {'id': '4', 'type': 'identif...
Plot the histogram distribution but as an area plot
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Factory method for creating an Entity. If an entity with the same type and identifier already exists, this will return a reference to that entity. If not, it will create a new one and add it to the list of known entities for this ACL. :type entity_type: str :param enti...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '16']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'download_object'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '11', '14']}; {'id': '4', 'type': 'identif...
Download an object to the specified destination path. :param container_name: Container name :type container_name: ``str`` :param object_name: Object name :type object_name: ``str`` :param destination_path: Full path to a file or a directory where the incoming fil...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'best_hits'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'};...
returns a dict with query => best mapped position
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'hlog_inv'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], '...
Inverse of base 10 hyperlog transform.
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Calls xmltag generator for multiple files.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_function'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'fn...
Get the source of a function and return its AST.
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Look for a configured crawl delay. @return: crawl delay in seconds or zero @rtype: integer >= 0
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Parses the arguments for the cauldron server
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Remove dots from the given data structure
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'save'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'};...
Save pickled model to file.
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The all-electron radial density.
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Doesn't require manual fetching of gistID of a gist passing gistName will return the content of gist. In case, names are ambigious, provide GistID or it will return the contents of recent ambigious gistname
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'render_pdf_file_to_image_files'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'c...
Render all the pages of the PDF file at pdf_file_name to image files with path and filename prefix given by output_filename_root. Any directories must have already been created, and the calling program is responsible for deleting any directories or image files. The program program_to_use, currently ei...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_calc_b'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'w'};...
Calculate the b coefficient.
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Mangle prefix result
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Lists all known spiders for a specific project. First class, maps to Scrapyd's list spiders endpoint.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_genes_for_hgnc_id'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], ...
obtain the ensembl gene IDs that correspond to a HGNC symbol
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Extracts the value out of the reply message. :param reply: In the case of a successful call the reply message will be:: {'ok': return_value, **default_fields} Therefore the method returns: return_value, **default_fields If the method raises an exception th...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'set_ignore_interrupts'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'default_parameter', 'children': ['...
turn off EINTR-raising from emulated syscalls on interruption by signals due to the nature of greenhouse's system call emulation, ``signal.siginterrupt`` can't be made to work with it. specifically, greenhouse can't differentiate between different signals. so this function toggles whether to restart fo...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run_pip_install'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6...
Installs the requirement.txt file on the given server. Usage:: fab <server> run_pip_install fab <server> run_pip_install:upgrade=1 :param upgrade: If set to 1, the command will be executed with the ``--upgrade`` flag.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'values'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'...
Read-only. A sequence containing the float values for this series, in the order they appear on the chart.
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Check if the given local folder has enough space. Check if the given local folder has enough space to store the specified remote file. Parameters ---------- remote_fname : str Path to the remote file remote_fname : str Path to the local folder max_disk_usage : float ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'spaceless_pdf_plot_maker'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'c...
Draw a pretty plot from an array A function that performs all the tedious matplotlib magic to draw a 2D array with as few parameters and as little whitespace as possible. Parameters ---------- array : array_like The input array to draw. filename : file, str or pathlib.Path ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '33']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'build'}; {'id': '3', 'type': 'parameters', 'children': ['4', '7', '10', '13', '16', '19', '22', '25', '28']}; {'id': '4', 'type': 'de...
Trigger a BuildConfiguration by name or ID
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Method to populate repositories which will be used to suggest repositories for the user. For this purpose we use two kinds of repositories. 1. Repositories starred by user him/herself. 2. Repositories starred by the users followed by the user. :param username: Username for the ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '29']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'estimateKronCovariances'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26']}; {'id':...
estimates the background covariance model before testing Args: phenos: [N x P] SP.array of P phenotypes for N individuals K1r: [N x N] SP.array of LMM-covariance/kinship koefficients (optional) If not provided, then linear regression analysis is performed K1c: ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'longest_run_1d'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'ar...
Return the length of the longest consecutive run of identical values. Parameters ---------- arr : bool array Input array Returns ------- int Length of longest run.
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Copies the contents of this directory to the given destination. Returns a Folder object that represents the moved directory.
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Remove the label number. The removed label is assigned a value of zero (i.e., background). Parameters ---------- label : int The label number to remove. relabel : bool, optional If `True`, then the segmentation image will be relabeled ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'users'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'i...
returns all users that have permissions for this resource
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'queue_stats'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'valu...
Grab stats from queues
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Shuffle an array in-place with a fixed seed.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'to_dict'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {...
Return a Python dict containing the important information about this Session Token.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '28']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_user'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13', '16', '19', '22', '25']}; {'id': '4', 'typ...
Create a new JIRA user. :param username: the username of the new user :type username: str :param email: email address of the new user :type email: str :param directoryId: The directory ID the new user should be a part of (Default: 1) :type directoryId: int :param...