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Get a reference to a single column from the table Returns ------- column : array expression
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Send System and App data to logs.
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Calculates total percentage of counts in top ns genes. Parameters ---------- mtx : `Union[np.array, sparse.spmatrix]` Matrix, where each row is a sample, each column a feature. ns : `Container[Int]` Positions to calculate cumulative proportion at. Values are considered 1-indexed...
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Gets the list of ``ObjectiveBanks`` mapped to an ``Objective``. arg: objective_id (osid.id.Id): ``Id`` of an ``Objective`` return: (osid.learning.ObjectiveBankList) - list of objective banks raise: NotFound - ``objective_id`` is not found raise: NullArgument - ``obj...
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Convert a string in ISO8601 form into a Datetime object. This is mainly used for converting timestamps sent from the TempoDB API, which are assumed to be correct. :param string t: the timestamp to convert :rtype: Datetime object
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Processes a proto histogram by adding it to accumulated state.
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From the given socket, reads and yields payload of the given size. With sockets, we don't receive all data at once. Therefore this method will yield each time we read some data from the socket until the payload_size has reached or socket has no more data. Parameters ---------- socket Socket...
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Return the hash of the local KV state. :returns: kv state hash :rtype: int
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Remove one signle package
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This is super minimal and pretty hacky, but it counts as a first pass.
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Stricter then base64_to_long since it really checks that it's base64url encoded :param data: The base64 string :return:
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Check if an instance is referenced in the records we have from Route53. If it is, return the list of domain names pointing to said instance. If nothing points to it, return an empty list.
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Get list of applications
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We overwrite constructor and accessors every time because the constructor might have to consume all members even if their decorator is below the "synthesizeConstructor" decorator and it also might need to update the getters and setters because the naming convention has changed.
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Returns the Django HTML to load the tag library and render the tag. Args: tag_id (str): The tag id for the to return the HTML for.
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Returns a list of agents corresponding to each of the constituents in a SIGNOR complex.
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Updates the framework properties dictionary :param properties: New framework properties to add
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Draws an embedding onto the chimera graph G, according to layout. If interaction_edges is not None, then only display the couplers in that list. If embedded_graph is not None, the only display the couplers between chains with intended couplings according to embedded_graph. Parameters ---------- ...
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Convert the given node into a Nodal Plane Distribution. :param node: a nodalPlaneDist node :returns: a :class:`openquake.hazardlib.geo.NodalPlane` instance
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Retrieves a list containing the names of databases shared with this account. :returns: List of database names
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Gets the blob specified by the url. caution: makes no api request. blob may not ACTUALLY exist :param urlparse.ParseResult url: the URL :param bool exists: if True, then syncs local blob object with cloud and raises exceptions if it doesn't exist remotely :return: the blob re...
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Additional clean data checks for path and keys. These are not cleaned in their respective methods e.g. `clean_slug` as they depend upon other field data. :return: Cleaned data.
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Return block of normal random numbers Parameters ---------- seed : {None, int} The seed to generate the noise.sd Returns -------- noise : numpy.ndarray Array of random numbers
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Validate Publish Parameters. :param bytes|str|unicode body: Message payload :param str routing_key: Message routing key :param str exchange: The exchange to publish the message to :param dict properties: Message properties :param bool mandatory: Requires the message is published...
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Check if the resource has a datastore. Returns: bool: Whether the resource has a datastore or not
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Fetches a list of all bandwidth limit rules for the given policy.
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Calls the Marvel API endpoint :param resource_url: url slug of the resource :type resource_url: str :param params: query params to add to endpoint :type params: str :returns: response -- Requests response
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Drop tables.
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Exit the console program sanely.
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Constructs a new metric value. This acts as an alternate to MetricValue constructor which simplifies specification of labels. Rather than having to create a MetricValue.Labels instance, all that's necessary to specify the required string. Args: labels (dict([string, [string]]): **kw: ...
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Helper function that checks the input object type against each in a list of classes, or if the input object is a list, each value that it contains against that list. :param name: Name of the object. :param obj: Object to check the type of. :param args: List of classes. :raises T...
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Opens the record file.
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Return a HTTPStatus compliant body attribute Be sure to purge any unallowed properties from the object. TIP: At the risk of being a bit slow we copy the errors instead of mutating them since they may have key/vals like headers that are useful elsewhere.
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Produce QGIS Template output. :param output_path: The output path. :type output_path: str :param composition: QGIS Composition object to get template. values :type composition: qgis.core.QgsLayout :return: Generated output path. :rtype: str
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Loads a MOC from a set of FITS file images. Parameters ---------- path_l : [str] A list of path where the fits image are located. max_norder : int The MOC resolution. Returns ------- moc : `~mocpy.moc.MOC` The union of all the...
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Generate a series of random characters. Kwargs: number_of_random_chars (int) : Number of characters long character_set (str): Specify a character set. Default is ASCII
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Make a request on this connection
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Determine if this is an ASCII based data stream, simply by checking the bytes for the word 'solid'.
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Gets errors from HTTP response
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Parse leaf-list value or list keys.
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Padds the address with zeroes
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Find a review score from a given reviewer to a product. Args: reviewer: Reviewer i.e. an instance of :class:`ria.bipartite.Reviewer`. product: Product i.e. an instance of :class:`ria.bipartite.Product`. Returns: A review object representing the review from the reviewer to...
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Fetches the file paths to the features files and labels files corresponding to the provided list of features
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Reconstruct representation of signal b in signal set.
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very simplistic, ...
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Set storage backend for downloader For full list of storage backend supported, please see :mod:`storage`. Args: storage (dict or BaseStorage): storage backend configuration or instance
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Report error about missing minimum version constraint and exit.
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Read the configuration file and load it into memory.
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Return a widget for the line number passed.
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Returns the section which contains the data of DataDirectory
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Terminate all processes in the process dictionary
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Plays the sounds. :filename: The input file name :translate: If True, it runs it through audioread which will translate from common compression formats to raw WAV.
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Parse a string date time to a datetime object. Suitable for dates serialized with .isoformat() :return: None, or an aware datetime instance, tz=UTC.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'load_cli_plugins'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'valu...
Load all plugins and attach them to a CLI object.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'init_conv_weight'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': '...
initilize conv layer weight.
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Discover what type of file it is based on the incoming string
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Run cli, processing arguments and executing subcommands.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'load_local_translationtable'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children'...
Load "ingest specific" translation from whatever they called something to the ontology label we need to map it to. To facilitate seeing more ontology lables in dipper ingests a reverse mapping from ontology lables to external strings is also generated and available as a dict localtcid
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_binary'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self...
when retrieving a NonRDF resource, parse binary data and make available via generators
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Append `instance` to model Arguments: instance (dict): Serialised instance Schema: instance.json
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_sumindex'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'se...
Convert tuple index to 1-D index into value
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Close a port on dummy_serial.
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Converts value into float or returns default when conversion is not possible. :param value: the value to convert. :param default_value: the default value. :return: float value or default value when conversion is not supported.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_system'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'valu...
Filter in the 'system' context :parameter str twig: twig to use for filtering :parameter **kwargs: any other tags to do the filter (except twig or context) :return: :class:`phoebe.parameters.parameters.Parameter` or :class:`phoebe.parameters.parameters.ParameterSet`
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'compute_pairwise_similarity_score'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children...
Computes the average pairwise similarity score between all pairs of Units. The pairwise similarity is calculated as the sum of similarity scores for all pairwise word pairs in a response -- except any pair composed of a word and itself -- divided by the total number of words in an attempt. I.e....
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_stats'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'};...
Get kitty stats as a dictionary
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'save_feedback'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'rdi...
Save feedback file
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convert the expression into an NFA
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Build query to retrieve object :param dict view_kwargs: kwargs from the resource view :params sqlalchemy_field filter_field: the field to filter on :params filter_value: the value to filter with :return sqlalchemy query: a query from sqlalchemy
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'default'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {...
Returns the static value that this defaults to.
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Adds a volume that already exists in the Storage system Args: resource (dict): Object to create. timeout: Timeout in seconds. Wait for task completion by default. The timeout does not abort the operation in OneView, just stop waiting for i...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'remove'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'valu...
Remove user's SSH public key from their LDAP entry.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'generation'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}...
Get the current generation state if the group is stable. Returns: the current generation or None if the group is unjoined/rebalancing
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_generate_attrs'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 's...
Get detailed info about target object. Uses ``inspect.classify_class_attrs`` to get several important details about each attribute on the target object. :return: The attribute details dict. :rtype: dict
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'select_action'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
Choose an action to perform # Returns Action to take (int)
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'remove_adapter'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value'...
Removes the given widget class information from the default set of adapters. If widget_class had been previously added by using add_adapter, the added adapter will be removed, restoring possibly previusly existing adapter(s). Notice that this function will remove only *one* adapter about given wige...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'ParseAgeSpecification'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], ...
Parses an aff4 age and returns a datastore age specification.
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A measurement of the measured sound pressure level, as a percent. Uses A-weighting, which focuses on levels up to 55 dB.
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Draw the figures and those that are shared and have been changed
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Parses a Windows Vista cached entry. Args: value_data (bytes): value data. cached_entry_offset (int): offset of the first cached entry data relative to the start of the value data. Returns: AppCompatCacheCachedEntry: cached entry. Raises: ParseError: if the value data co...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'return_input_paths'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children...
Returns the paths of files from the FileStore Input1: Toil job instance Input2: Working directory Input3: jobstore id dictionary Input4: names of files to be returned from the jobstore Returns: path(s) to the file(s) requested -- unpack these!
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Read filenames from the input stream and detect their palette using multiple processes.
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Create the `Layout` for the help text for the current item in the sidebar.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'compute_K_factors'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifie...
Compute analytical geometrical factors. TODO: use real electrode positions from self.grid
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Get a PEP 302 "loader" object for module_or_name If the module or package is accessible via the normal import mechanism, a wrapper around the relevant part of that machinery is returned. Returns None if the module cannot be found or imported. If the named module is not already imported, its containing...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'delete_user'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': '...
Deletes a user from the server. :param string username: Name of the user to delete from the server.
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Drop-in replacement for healpy `~healpy.pixelfunc.pix2vec`.
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Return a Point instance from a given list
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call op from page 2 or 3
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Package up the given function with the current Eliot context, and then restore context and call given function when the resulting callable is run. This allows continuing the action context within a different thread. The result should only be used once, since it relies on L{Action.serialize_task_id} who...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_lr_scheduler'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9']}; {'id': '4', 'type': 'identifier', ...
Compute learning rate and refactor scheduler Parameters: --------- learning_rate : float original learning rate lr_refactor_step : comma separated str epochs to change learning rate lr_refactor_ratio : float lr *= ratio at certain steps num_example : int number o...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_dimension_index'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'v...
Get the index of the requested dimension. Args: dimension: Dimension to look up by name or by index Returns: Integer index of the requested dimension
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Initiate a new request through this TChannel. :param hostport: Host to which the request will be made. If unspecified, a random known peer will be picked. This is not necessary if using Hyperbahn. :param service: The name of a service available on Hyperb...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'load_cli_config'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'a...
Modifies ARGS in-place to have the attributes defined in the CLI config file if it doesn't already have them. Certain default values are given if they are not in ARGS or the config file.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_col'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value':...
Return all values in the column corresponding to col_name that satisfies filter, which is a function that takes in a value of the column's type and returns True or False Parameters ---------- col_name : str Name of desired column filter : function, optional ...
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'find'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'};...
Searches for a pattern in the current memory segment
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'norm_join'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'pr...
Join ``prefix`` and ``suffix`` paths and return the resulting path, normalized. :param string prefix: the prefix path :param string suffix: the suffix path :rtype: string
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'PopAllChildren'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'se...
Method to remove and return all children of current node :return: list of children
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_build_brokers'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value'...
Build broker objects using broker-ids.
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_cmdclass'}; {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '13', '28', '39']}; ...
A ``cmdclass`` that works around a setuptools deficiency. There is no need to build wheels when installing a package, however some versions of setuptools seem to mandate this. This is a hacky workaround that modifies the ``cmdclass`` returned by versioneer so that not having wheel installed is not a fa...