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7 values
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29 values
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int64
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84.1M
line_count
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language
stringclasses
14 values
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/AdductInfo.cpp
.cpp
8,427
243
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Erhan Kenar, Chris Bielow $ // --------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/NASequence.cpp
.cpp
14,038
452
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Samuel Wein $ // $Authors: Samuel Wein, Timo Sachsenberg, Hendrik Weisser $ // ----------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/Element.cpp
.cpp
3,926
166
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ModifiedPeptideGenerator.cpp
.cpp
13,460
364
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Timo Sachsenberg $ // -----------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/Residue.cpp
.cpp
18,062
648
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch, Jang Jang Jin$ // ----------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/TheoreticalSpectrumGenerator.cpp
.cpp
48,296
1,295
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg, Eugen Netz $ // $Authors: Andreas Bertsch $ // ------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/Ribonucleotide.cpp
.cpp
4,193
175
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hendrik Weisser $ // $Authors: Hendrik Weisser $ // -------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/Tagger.cpp
.cpp
6,454
196
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Eugen Netz $ // $Authors: Timo Sachsenberg, Eugen Netz $ // -----------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/DigestionEnzymeProtein.cpp
.cpp
5,549
222
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Xiao Liang $ // $Authors: Xiao Liang $ // ----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ModificationDefinition.cpp
.cpp
3,090
117
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch $ // ------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/NucleicAcidSpectrumGenerator.cpp
.cpp
20,053
519
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hendrik Weisser $ // $Authors: Hendrik Weisser $ // -------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/AASequence.cpp
.cpp
55,738
1,706
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch $ // ------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.cpp
.cpp
44,107
1,159
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Eugen Netz $ // $Authors: Eugen Netz $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ProteaseDigestion.cpp
.cpp
5,603
162
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow, Xiao Liang $ // $Authors: Marc Sturm, Chris Bielow $ // -------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ProteaseDB.cpp
.cpp
2,168
79
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Xiao Liang $ // $Authors: Xiao Liang, Chris Bielow $ // --------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/SpectrumAnnotator.cpp
.cpp
19,023
494
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: Mathias Walzer $ // ---------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/RibonucleotideDB.cpp
.cpp
17,618
469
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hendrik Weisser $ // $Authors: Hendrik Weisser $ // -------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/AAIndex.cpp
.cpp
435
14
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ModificationsDB.cpp
.cpp
30,247
907
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch $ // ------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/DigestionEnzymeRNA.cpp
.cpp
1,876
86
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hendrik Weisser $ // $Authors: Hendrik Weisser $ // ------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/SimpleTSGXLMS.cpp
.cpp
27,829
734
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Eugen Netz $ // $Authors: Eugen Netz $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ElementDB.cpp
.cpp
37,303
705
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch, Timo Sachsenberg, Chris Bielow, Jang Jang Jin$...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/DecoyGenerator.cpp
.cpp
7,412
220
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Timo Sachsenberg $ // -----------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/RNaseDigestion.cpp
.cpp
7,491
232
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow, Xiao Liang $ // $Authors: Marc Sturm, Chris Bielow $ // -------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ModificationDefinitionsSet.cpp
.cpp
12,665
386
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch $ // ------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/EmpiricalFormula.cpp
.cpp
19,105
691
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow, Ahmed Khalil $ // $Authors: Andreas Bertsch, Chris Bielow $ // ------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/RNaseDB.cpp
.cpp
570
22
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hendrik Weisser $ // $Authors: Hendrik Weisser $ // ------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/DigestionEnzyme.cpp
.cpp
4,992
200
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Xiao Liang $ // $Authors: Xiao Liang $ // ----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/CrossLinksDB.cpp
.cpp
11,569
350
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Eugen Netz $ // $Authors: Eugen Netz $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ModifiedNASequenceGenerator.cpp
.cpp
10,184
287
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Timo Sachsenberg $ // -----------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.cpp
.cpp
5,056
209
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch $ // ------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.cpp
.cpp
7,258
191
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch $ // ------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSElement.cpp
.cpp
1,705
55
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Anton Pervukhin <Anton.Pervukhin@CeBiTec.Uni-Bielefeld.DE> $ //...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSIsotopeDistribution.cpp
.cpp
7,626
243
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Anton Pervukhin <Anton.Pervukhin@CeBiTec.Uni-Bielefeld.DE> $ //...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/RealMassDecomposer.cpp
.cpp
6,041
159
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Anton Pervukhin <Anton.Pervukhin@CeBiTec.Uni-Bielefeld.DE> $ //...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/Weights.cpp
.cpp
4,049
134
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Anton Pervukhin <Anton.Pervukhin@CeBiTec.Uni-Bielefeld.DE> $ //...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabet.cpp
.cpp
4,006
149
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Anton Pervukhin <Anton.Pervukhin@CeBiTec.Uni-Bielefeld.DE> $ //...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetTextParser.cpp
.cpp
1,378
43
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Anton Pervukhin <Anton.Pervukhin@CeBiTec.Uni-Bielefeld.DE> ?? $...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.cpp
.cpp
7,695
278
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Clemens Groepl, Andreas Bertsch, Chris Bielow $ // ----------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.cpp
.cpp
1,874
52
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hannes Rost $ // $Authors: Hannes Rost, Michał Startek, Mateusz Łącki $ // --------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.cpp
.cpp
20,913
521
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Clemens Groepl, Andreas Bertsch, Chris Bielow $ // ----------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopePatternGenerator.cpp
.cpp
859
34
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Nikos Patikos $ // $Authors: Nikos Patikos $ // -----------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.cpp
.cpp
13,220
316
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: $ // $Authors: Hannes Rost, Michał Startek, Mateusz Łącki $ // --------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.cpp
.cpp
49,432
1,153
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/GaussTraceFitter.cpp
.cpp
9,814
309
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Stephan Aiche$ // ----------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/ElutionPeakDetection.cpp
.cpp
21,173
634
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Erhan Kenar, Holger Franken, Chris Bielow $ // -----------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.cpp
.cpp
6,950
241
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Stephan Aiche $ // ---------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/LevMarqFitter1D.cpp
.cpp
3,073
86
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MultiplexFilteredMSExperiment.cpp
.cpp
3,933
140
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/FeatureFinderAlgorithmMetaboIdent.cpp
.cpp
36,585
915
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Timo Sachsenberg, Hendrik Weisser $ // ------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/EGHTraceFitter.cpp
.cpp
14,658
421
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Stephan Aiche$ // ----------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp
.cpp
79,846
1,949
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Marc Sturm $ // -----------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MultiplexDeltaMasses.cpp
.cpp
2,314
89
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/EmgModel.cpp
.cpp
3,846
120
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/EmgScoring.cpp
.cpp
370
13
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hannes Roest $ // $Authors: Hannes Roest $ // ------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MultiplexSatelliteProfile.cpp
.cpp
838
36
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/BiGaussModel.cpp
.cpp
3,799
121
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MultiplexFilteringCentroided.cpp
.cpp
4,076
124
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/InterpolationModel.cpp
.cpp
383
16
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/EmgFitter1D.cpp
.cpp
12,307
374
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MultiplexFilteredPeak.cpp
.cpp
2,776
101
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/TraceFitter.cpp
.cpp
4,449
138
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Stephan Aiche, Marc Sturm $ // ---------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/Biosaur2Algorithm.cpp
.cpp
105,759
3,259
// Copyright (c) 2002-present, OpenMS Inc. // SPDX-License-Identifier: BSD-3-Clause #include <OpenMS/FEATUREFINDER/Biosaur2Algorithm.h> #include <OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h> #include <OpenMS/CONCEPT/Constants.h> #include <OpenMS/CONCEPT/Exception.h> #include <OpenMS/CONCEPT/LogStream.h...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/BiGaussFitter1D.cpp
.cpp
3,123
102
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/GaussFitter1D.cpp
.cpp
2,697
99
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/Fitter1D.cpp
.cpp
2,312
67
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/FFIDAlgoExternalIDHandler.cpp
.cpp
24,882
683
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Hendrik Weisser $ // ------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/ExtendedIsotopeModel.cpp
.cpp
8,198
227
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MassTraceDetection.cpp
.cpp
28,650
696
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Erhan Kenar, Holger Franken, Mohammed Alhigaylan $ // ---------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/GaussModel.cpp
.cpp
3,179
107
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/IsotopeModel.cpp
.cpp
9,636
265
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Clemens Groepl, Chris Bielow $ // -----------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/PeakWidthEstimator.cpp
.cpp
2,332
76
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/BaseModel.cpp
.cpp
473
15
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MultiplexSatelliteCentroided.cpp
.cpp
761
31
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/IsotopeFitter1D.cpp
.cpp
4,002
127
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MaxLikeliFitter1D.cpp
.cpp
2,613
77
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/FeatureFinderAlgorithmPicked.cpp
.cpp
86,316
2,202
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Marc Sturm, Tom Lukas Lankenau $ // ---------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MultiplexIsotopicPeakPattern.cpp
.cpp
2,031
75
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MultiplexFilteringProfile.cpp
.cpp
17,318
428
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MultiplexFiltering.cpp
.cpp
24,025
586
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/ElutionModelFitter.cpp
.cpp
16,779
451
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hendrik Weisser $ // $Authors: Hendrik Weisser $ // -------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/FeatureFindingMetabo.cpp
.cpp
37,765
1,056
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Erhan Kenar, Holger Franken $ // ------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MultiplexClustering.cpp
.cpp
6,504
191
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/ModelDescription.cpp
.cpp
512
17
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/MultiplexDeltaMassesGenerator.cpp
.cpp
25,937
608
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/ExtendedIsotopeFitter1D.cpp
.cpp
4,693
140
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/FEATUREFINDER/SeedListGenerator.cpp
.cpp
3,998
118
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hendrik Weisser $ // $Authors: Hendrik Weisser $ // -------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/APPLICATIONS/ParameterInformation.cpp
.cpp
1,974
71
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Marc Sturm, Clemens Groepl $ // ------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/APPLICATIONS/ConsoleUtils.cpp
.cpp
6,871
198
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // ------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/APPLICATIONS/SearchEngineBase.cpp
.cpp
6,363
155
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/APPLICATIONS/ToolHandler.cpp
.cpp
22,642
412
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/APPLICATIONS/OpenSwathBase.cpp
.cpp
15,108
336
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hannes Roest, Justin Sing$ // $Authors: Hannes Roest, Justin Sing$ // -------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/APPLICATIONS/INIUpdater.cpp
.cpp
3,791
103
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/APPLICATIONS/TOPPBase.cpp
.cpp
98,786
2,618
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Marc Sturm, Clemens Groepl, Johannes Junker, Stephan Aiche, Chr...
C++
3D
OpenMS/OpenMS
src/openms/source/PROCESSING/FEATURE/FeatureOverlapFilter.cpp
.cpp
18,749
527
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Julianus Pfeuffer $ // $Authors: Julianus Pfeuffer $ // ---------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/PROCESSING/CALIBRATION/PrecursorCorrection.cpp
.cpp
17,196
430
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Timo Sachsenberg $ // -----------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/PROCESSING/CALIBRATION/MZTrafoModel.cpp
.cpp
12,035
391
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/PROCESSING/CALIBRATION/InternalCalibration.cpp
.cpp
21,030
554
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/PROCESSING/FILTERING/NLargest.cpp
.cpp
1,505
74
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
C++
3D
OpenMS/OpenMS
src/openms/source/PROCESSING/FILTERING/WindowMower.cpp
.cpp
1,934
73
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
C++