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14 values
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/CLUSTERING/ClusterHierarchical.h
.h
7,498
196
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 59 Temple Place, Suite...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/CLUSTERING/AverageLinkage.h
.h
2,639
63
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/CLUSTERING/HashGrid.h
.h
12,976
514
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Bastian Blank $ // --------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/CLUSTERING/GridBasedCluster.h
.h
2,917
111
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/CLUSTERING/EuclideanSimilarity.h
.h
2,142
76
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/CLUSTERING/CompleteLinkage.h
.h
2,507
69
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/CLUSTERING/GridBasedClustering.h
.h
26,239
665
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse, Johannes Veit $ // --------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/CLUSTERING/ClusteringGrid.h
.h
3,964
139
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/CLUSTERING/ClusterAnalyzer.h
.h
6,039
128
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/RANSAC/RANSAC.h
.h
9,742
227
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: George Rosenberger $ // $Authors: George Rosenberger, Hannes Roest, Chris Bielow $ // ---------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/RANSAC/RANSACModelQuadratic.h
.h
1,241
42
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: George Rosenberger $ // $Authors: George Rosenberger, Hannes Roest, Chris Bielow $ // ---------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/RANSAC/RANSACModel.h
.h
2,669
79
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: George Rosenberger $ // $Authors: George Rosenberger, Hannes Roest, Chris Bielow $ // ---------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/ML/RANSAC/RANSACModelLinear.h
.h
1,240
44
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: George Rosenberger $ // $Authors: George Rosenberger, Hannes Roest, Chris Bielow $ // ---------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/BinnedSumAgreeingIntensities.h
.h
2,306
72
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/SpectrumAlignmentScore.h
.h
2,245
75
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/PeakAlignment.h
.h
1,884
66
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/SteinScottImproveScore.h
.h
2,992
77
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Vipul Patel $ // ----------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/SpectraSTSimilarityScore.h
.h
4,183
120
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: David Wojnar $ // ---------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/PeakSpectrumCompareFunctor.h
.h
1,456
53
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/ZhangSimilarityScore.h
.h
1,666
65
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/BinnedSpectralContrastAngle.h
.h
2,034
66
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/BinnedSharedPeakCount.h
.h
2,020
68
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/SpectrumCheapDPCorr.h
.h
2,674
99
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/SpectrumAlignment.h
.h
8,846
292
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch $ // ------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/BinnedSpectrumCompareFunctor.h
.h
1,808
59
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/COMPARISON/SpectrumPrecursorComparator.h
.h
1,349
54
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/MathFunctions.h
.h
16,975
587
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Marc Sturm $ // ------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/StatisticFunctions.h
.h
32,887
960
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Clemens Groepl, Johannes Junker, Mathias Walzer, Chris Bielow $...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/MISC/CubicSpline2d.h
.h
2,620
94
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Lars Nilse $ // $Authors: Lars Nilse $ // -----------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/MISC/EmgGradientDescent.h
.h
17,393
536
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Douglas McCloskey, Pasquale Domenico Colaianni $ // $Authors: Douglas McCloskey, Pasquale Domen...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/MISC/BSpline2d.h
.h
3,779
119
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Stephan Aiche, Timo Sachsenberg $ // --------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/MISC/SplineBisection.h
.h
1,834
74
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hannes Roest $ // $Authors: Hannes Roest $ // -------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/STATISTICS/GumbelMaxLikelihoodFitter.h
.h
2,527
87
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Julianus Pfeuffer $ // $Authors: Julianus Pfeuffer $ // ---------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/STATISTICS/PosteriorErrorProbabilityModel.h
.h
15,659
278
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: David Wojnar $ // ---------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/STATISTICS/Histogram.h
.h
12,218
438
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Marc Sturm $ // ------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/STATISTICS/BasicStatistics.h
.h
9,005
293
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/STATISTICS/GumbelDistributionFitter.h
.h
2,861
96
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/STATISTICS/GammaDistributionFitter.h
.h
2,474
86
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch $ // ------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/MATH/STATISTICS/GaussFitter.h
.h
3,846
121
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Andreas Bertsch, Chris Bielow $ // --------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/StringView.h
.h
2,497
103
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Marc Sturm $ // ------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/ChargePair.h
.h
4,547
155
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: $ // --------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h
.h
7,314
182
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Marc Sturm $ // ------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/MatrixEigen.h
.h
4,516
133
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Timo Sachsenberg $ // -----------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/MassExplainer.h
.h
7,603
224
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/KDTree.h
.h
64,453
2,209
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Johannes Veit $ // $Authors: Johannes Veit $ // -----------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/CVReference.h
.h
1,657
79
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch $ // ------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/DRange.h
.h
10,691
402
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Marc Sturm $ // ------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h
.h
10,926
442
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Marc Sturm, Stephan Aiche $ // ---------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/CalibrationData.h
.h
5,832
184
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/CVMappingTerm.h
.h
2,908
115
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch $ // ------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/Matrix.h
.h
8,667
314
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Timo Sachsenberg $ // -----------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/StringUtilsSimple.h
.h
19,471
653
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg, Chris Bielow $ // $Authors: Marc Sturm, Stephan Aiche, Chris Bielow $ // ----...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h
.h
7,047
178
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Marc Sturm, Chris Bielow $ // ----------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/StringUtils.h
.h
10,303
247
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg, Chris Bielow $ // $Authors: Marc Sturm, Stephan Aiche, Chris Bielow $ // ----...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/StringListUtils.h
.h
8,402
230
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Marc Sturm $ // ------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/StringConversions.h
.h
9,835
282
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg, Chris Bielow $ // $Authors: Marc Sturm, Stephan Aiche, Chris Bielow $ // ----...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h
.h
5,174
229
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/ExposedVector.h
.h
10,218
372
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/CVMappings.h
.h
2,301
91
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch $ // ------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/FlagSet.h
.h
4,738
212
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/BinaryTreeNode.h
.h
1,222
47
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/DistanceMatrix.h
.h
14,176
476
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Mathias Walzer $ // $Authors: $ // ------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/DateTime.h
.h
5,802
218
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Nico Pfeifer $ // ---------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/ListUtils.h
.h
8,710
285
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Stephan Aiche, Chris Bielow $ // ------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/ParamValue.h
.h
14,831
445
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Authors: Ruben Grünberg $ // -------------------------------------------------------------------------- #p...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/ConstRefVector.h
.h
19,686
749
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: $ // ----------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/LPWrapper.h
.h
17,138
526
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Alexandra Zerck $ // ------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/QTCluster.h
.h
12,376
347
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hendrik Weisser $ // $Authors: Steffen Sass, Hendrik Weisser $ // -----------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/IsotopeCluster.h
.h
2,710
91
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Marc Sturm $ // ------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/String.h
.h
18,092
501
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Marc Sturm $ // ------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/MatchedIterator.h
.h
11,585
316
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/Adduct.h
.h
3,505
110
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: $ // --------------------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/CVMappingRule.h
.h
3,057
129
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Andreas Bertsch $ // ------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/OSWData.h
.h
14,081
397
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h
.h
3,753
134
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow, Mathias Walzer $ // ---------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h
.h
9,730
386
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Clemens Groepl, Marc Sturm $ // -------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h
.h
16,338
483
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Marc Sturm $ // ------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/Date.h
.h
2,221
93
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg$ // $Authors: Marc Sturm $ // ------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/FASTAContainer.h
.h
18,063
516
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/Param.h
.h
25,000
665
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Marc Sturm, Clemens Groepl $ // -------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/Compomer.h
.h
10,838
334
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Chris Bielow $ // $Authors: Chris Bielow $ // -------------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/GridFeature.h
.h
2,055
76
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Hendrik Weisser $ // $Authors: Steffen Sass, Hendrik Weisser $ // -----------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/ListUtilsIO.h
.h
2,303
83
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Timo Sachsenberg $ // $Authors: Stephan Aiche $ // --------------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/include/OpenMS/DATASTRUCTURES/Utils/MapUtilities.h
.h
3,552
129
// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin // SPDX-License-Identifier: BSD-3-Clause // // -------------------------------------------------------------------------- // $Maintainer: Julianus Pfeuffer$ // $Authors: Julianus Pfeuffer $ // ----------------------------------------...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/Quadtree/include/Quadtree.h
.h
10,094
315
#pragma once #include <cassert> #include <algorithm> #include <array> #include <memory> #include <type_traits> #include <vector> #include "Box.h" namespace quadtree { template<typename T, typename GetBox, typename Equal = std::equal_to<T>, typename Float = float> class Quadtree { static_assert(std::is_convertibl...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/Quadtree/include/Box.h
.h
1,433
67
#pragma once #include "Vector2.h" namespace quadtree { template<typename T> class Box { public: T left; T top; T width; // Must be positive T height; // Must be positive constexpr Box(T Left = 0, T Top = 0, T Width = 0, T Height = 0) noexcept : left(Left), top(Top), width(Width), height(...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/Quadtree/include/Vector2.h
.h
705
47
#pragma once namespace quadtree { template<typename T> class Vector2 { public: T x; T y; constexpr Vector2<T>(T X = 0, T Y = 0) noexcept : x(X), y(Y) { } constexpr Vector2<T>& operator+=(const Vector2<T>& other) noexcept { x += other.x; y += other.y; return *this...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/FFT/DIF.hpp
.hpp
1,845
60
#ifndef _DIF_HPP #define _DIF_HPP #include <iostream> #include <cmath> #include "RealFFTPostprocessor.hpp" #include "DIFButterfly.hpp" template<unsigned char LOG_N, bool SHUFFLE> class DIF { public: inline static void fft1d(cpx* __restrict const data) { DIFButterfly< 1ul << LOG_N >::apply(data); if (SHUFFL...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/FFT/DIFButterfly.hpp
.hpp
4,306
184
#ifndef _DIFBUTTERFLY_HPP #define _DIFBUTTERFLY_HPP #include "Twiddles.hpp" template<unsigned long N> class DIFButterfly { public: // Can improve speed, but makes compilation very resource intensive // for larger N: // __attribute__((always_inline)) inline static void apply(cpx* __restrict const data) { ...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/FFT/DIT.hpp
.hpp
1,891
62
#ifndef _DIT_HPP #define _DIT_HPP #include <iostream> #include <cmath> #include "RealFFTPostprocessor.hpp" #include "DITButterfly.hpp" template<unsigned char LOG_N, bool SHUFFLE> class DIT { public: inline static void fft1d(cpx* __restrict const data) { if (SHUFFLE) RecursiveShuffle<cpx, LOG_N>::apply(da...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/FFT/shape_to_log_shape.hpp
.hpp
1,819
62
#ifndef _SHAPE_TO_LOG_SHAPE_HPP #define _SHAPE_TO_LOG_SHAPE_HPP inline unsigned char integer_log2(unsigned long val) { // Note: that can be sped up using bit twiddling (cast to float, // etc.) or using the clz opcode. But it's still reasonably fast as // is: unsigned char res = round( log2(val) ); #ifdef SHA...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/FFT/DITButterfly.hpp
.hpp
4,017
170
#ifndef _DITBUTTERFLY_HPP #define _DITBUTTERFLY_HPP #include "Twiddles.hpp" template<unsigned long N> class DITButterfly { public: // Can improve speed, but makes compilation very resource intensive // for larger N: // __attribute__((always_inline)) inline static void apply(cpx* __restrict const data) { ...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/FFT/RealFFTPostprocessor.hpp
.hpp
2,970
99
#ifndef _REALFFTPOSTPROCESSOR_HPP #define _REALFFTPOSTPROCESSOR_HPP #include "cpx.hpp" #include "Twiddles.hpp" template<unsigned int LOG_N> class RealFFTPostprocessor { public: // Note: Here N refers to the full length of the equivalent complex // FFT (as above): inline static void apply(cpx* const data) { ...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/FFT/Twiddles.hpp
.hpp
2,071
63
#ifndef TWIDDLES_H #define TWIDDLES_H #define _USE_MATH_DEFINES #include <cmath> #include "cpx.hpp" template<unsigned long int N> class Twiddles { public: inline static void advance(cpx & current) { current += current * delta(); } inline static constexpr cpx delta() { // Used in the recurrence // c...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/FFT/cpx.hpp
.hpp
2,440
109
#ifndef _CPX_HPP #define _CPX_HPP #include <ostream> // in MSVC M_PI constant is non-standard #define _USE_MATH_DEFINES #include <math.h> struct cpx { static constexpr double PrintEpsilon = 1e-12; double r; double i; constexpr cpx(): r(0.0), i(0.0) { } constexpr cpx(double rVal): r(rVal), ...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/FFT/FFT.hpp
.hpp
17,699
466
#ifndef _FFT_HPP #define _FFT_HPP // #include this file to import all FFT utilities from this // subdirectory. const unsigned char FFT1D_MAX_LOG_N = 16u; #include "../BitReversedShuffle/RecursiveShuffle.hpp" #include "DIF.hpp" #include "DIT.hpp" #include "../Tensor/Tensor.hpp" #include "shape_to_log_shape.hpp" #in...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/Convolution/naive_convolve.hpp
.hpp
4,628
122
#ifndef _NAIVE_CONVOLVE_HPP #define _NAIVE_CONVOLVE_HPP #include "../Tensor/Tensor.hpp" #include "custom_pow.hpp" // O(n^2); use for testing and on small problems: template <typename T> Tensor<T> naive_convolve(const Tensor<T> & lhs, const Tensor<T> & rhs) { #ifdef SHAPE_CHECK assert(lhs.dimension() == rhs.dimens...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/Convolution/any_and_all.hpp
.hpp
346
19
#ifndef _ANY_AND_ALL_HPP #define _ANY_AND_ALL_HPP inline bool any(const Vector<bool> & rhs) { for (unsigned long k=0; k<rhs.size(); ++k) if (rhs[k]) return true; return false; } inline bool all(const Vector<bool> & rhs) { for (unsigned long k=0; k<rhs.size(); ++k) if (! rhs[k]) return false;...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/Convolution/p_convolve.hpp
.hpp
22,229
546
#ifndef _P_CONVOLVE_HPP #define _P_CONVOLVE_HPP // See Pfeuffer and Serang 2016 JMLR for details. Note that this // implementation does not yet perform the linear regression // correction from the reference above (which would further improve // accuracy). #include <array> #include <set> #include "naive_convolve.hpp" ...
Unknown
3D
OpenMS/OpenMS
src/openms/extern/evergreen/src/Convolution/custom_pow.hpp
.hpp
1,187
59
#ifndef _CUSTOM_POW_HPP #define _CUSTOM_POW_HPP // greater numeric stability than the one listed below: inline double fast_pow(double a, const double b) { // calculate approximation with just the fraction of the exponent int exp = (int) b; union { double d; int x[2]; } u = { a }; u.x[1] = (int)((b - ...
Unknown