keyword stringclasses 7
values | repo_name stringlengths 8 98 | file_path stringlengths 4 244 | file_extension stringclasses 29
values | file_size int64 0 84.1M | line_count int64 0 1.6M | content stringlengths 1 84.1M ⌀ | language stringclasses 14
values |
|---|---|---|---|---|---|---|---|
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.cpp | .cpp | 2,714 | 90 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/PrecursorVisualizer.cpp | .cpp | 3,226 | 110 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg$
// $Authors: Marc Sturm $
// ------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.cpp | .cpp | 5,895 | 158 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer:Timo Sachsenberg $
// $Authors: Marc Sturm $
// ------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/ProductVisualizer.cpp | .cpp | 1,606 | 60 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer:Timo Sachsenberg $
// $Authors: Marc Sturm $
// ------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/MetaInfoVisualizer.cpp | .cpp | 7,011 | 273 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/SampleVisualizer.cpp | .cpp | 2,602 | 85 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer:Timo Sachsenberg $
// $Authors: Marc Sturm $
// ------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/AcquisitionInfoVisualizer.cpp | .cpp | 1,235 | 53 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/ContactPersonVisualizer.cpp | .cpp | 1,856 | 66 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/SoftwareVisualizer.cpp | .cpp | 1,254 | 54 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer:Timo Sachsenberg $
// $Authors: Marc Sturm $
// ------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/HPLCVisualizer.cpp | .cpp | 1,927 | 66 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/MetaInfoDescriptionVisualizer.cpp | .cpp | 1,238 | 50 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg$
// $Authors: Marc Sturm $
// ------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/MassAnalyzerVisualizer.cpp | .cpp | 5,288 | 117 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/InstrumentVisualizer.cpp | .cpp | 1,984 | 74 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/InstrumentSettingsVisualizer.cpp | .cpp | 2,295 | 71 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/SourceFileVisualizer.cpp | .cpp | 2,394 | 76 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/ExperimentalSettingsVisualizer.cpp | .cpp | 1,938 | 75 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/BaseVisualizer.cpp | .cpp | 425 | 15 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/DataProcessingVisualizer.cpp | .cpp | 2,515 | 102 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/IonSourceVisualizer.cpp | .cpp | 2,500 | 76 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.cpp | .cpp | 1,507 | 56 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/PeptideHitVisualizer.cpp | .cpp | 1,564 | 60 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg$
// $Authors: Marc Sturm $
// ------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/BaseVisualizerGUI.cpp | .cpp | 5,500 | 200 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/IonDetectorVisualizer.cpp | .cpp | 2,347 | 77 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/GradientVisualizer.cpp | .cpp | 7,241 | 266 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/ProteinHitVisualizer.cpp | .cpp | 1,553 | 59 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer:Timo Sachsenberg $
// $Authors: Marc Sturm $
// ------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/SpectrumSettingsVisualizer.cpp | .cpp | 1,801 | 68 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer:Timo Sachsenberg $
// $Authors: Marc Sturm $
// ------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/ScanWindowVisualizer.cpp | .cpp | 1,232 | 54 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISUALIZER/AcquisitionVisualizer.cpp | .cpp | 1,218 | 55 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISITORS/LayerStatistics.cpp | .cpp | 11,057 | 307 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// -------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/VISITORS/LayerStoreData.cpp | .cpp | 9,554 | 272 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// -------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp | .cpp | 439 | 15 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// -------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp | .cpp | 574 | 22 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker $
// ---------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DItem.cpp | .cpp | 2,304 | 84 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker $
// ---------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DVerticalLineItem.cpp | .cpp | 4,180 | 114 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Jihyung Kim, Timo Sachsenberg $
// $Authors: Jihyung Kim, Timo Sachsenberg $
// --------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DDistanceItem.cpp | .cpp | 3,774 | 100 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit, Chris Bielow $
// $Authors: Johannes Junker, Chris Bielow $
// -----------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DTextItem.cpp | .cpp | 1,391 | 45 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Johannes Junker, Timo Sachsenberg $
// ------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/ANNOTATION/Annotations1DContainer.cpp | .cpp | 3,028 | 135 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker $
// ---------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/APPLICATIONS/FLASHDeconvWizardBase.cpp | .cpp | 2,442 | 80 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Jihyung Kim $
// $Authors: Jihyung Kim $
// ---------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp | .cpp | 98,184 | 2,638 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Timo Sachsenberg, Marc Sturm $
// -----------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp | .cpp | 51,026 | 1,525 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker, Chris Bielow $
// -------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp | .cpp | 2,369 | 89 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// -------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp | .cpp | 4,934 | 178 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp | .cpp | 3,478 | 118 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp | .cpp | 7,507 | 207 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// -------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp | .cpp | 8,763 | 234 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp | .cpp | 7,983 | 228 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Johannes Junker, Chris Bielow $
// --------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/FLASHDeconvWizard.cpp | .cpp | 4,521 | 130 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Jihyung Kim $
// $Authors: Jihyung Kim $
// ---------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp | .cpp | 5,036 | 152 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// -------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/Plot1DGoToDialog.cpp | .cpp | 1,923 | 82 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg$
// $Authors: Marc Sturm $
// ------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/ListFilterDialog.cpp | .cpp | 3,329 | 109 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// -------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/PythonSelector.cpp | .cpp | 2,426 | 85 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// -------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/Plot1DPrefDialog.cpp | .cpp | 806 | 34 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/TOPPASInputFileDialog.cpp | .cpp | 1,542 | 58 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker $
// ---------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/PythonModuleRequirement.cpp | .cpp | 2,301 | 78 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// -------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/TOPPASIOMappingDialog.cpp | .cpp | 11,306 | 329 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker $
// ---------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/Plot2DGoToDialog.cpp | .cpp | 3,027 | 106 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/DataFilterDialog.cpp | .cpp | 6,212 | 212 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg$
// $Authors: Marc Sturm $
// ------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/HistogramDialog.cpp | .cpp | 2,145 | 84 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/TOPPASInputFilesDialog.cpp | .cpp | 1,377 | 51 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker $
// ---------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/SaveImageDialog.cpp | .cpp | 4,926 | 189 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/TheoreticalSpectrumGenerationDialog.cpp | .cpp | 17,673 | 449 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm, Tom Waschischeck $
// -----------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/TOPPViewPrefDialog.cpp | .cpp | 6,714 | 153 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm, Chris Bielow $
// ---------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/TOPPViewOpenDialog.cpp | .cpp | 4,053 | 182 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/FLASHDeconvTabWidget.cpp | .cpp | 13,231 | 374 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Jihyung Kim $
// $Authors: Jihyung Kim $
// ---------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/ToolsDialog.cpp | .cpp | 14,166 | 471 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/Plot3DPrefDialog.cpp | .cpp | 805 | 33 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/TOPPASVertexNameDialog.cpp | .cpp | 1,295 | 47 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker $
// ---------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/FeatureEditDialog.cpp | .cpp | 1,423 | 55 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/SpectrumAlignmentDialog.cpp | .cpp | 2,604 | 104 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/Plot2DPrefDialog.cpp | .cpp | 805 | 33 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/LayerStatisticsDialog.cpp | .cpp | 6,391 | 182 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// -----------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/TOPPASOutputFilesDialog.cpp | .cpp | 1,932 | 78 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker $
// ---------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/SwathTabWidget.cpp | .cpp | 24,563 | 556 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Chris Bielow $
// -------------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/openms_gui/source/VISUAL/DIALOGS/TOPPASToolConfigDialog.cpp | .cpp | 6,091 | 193 | // Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Johannes Veit $
// $Authors: Johannes Junker $
// ---------------------------------------------... | C++ |
3D | OpenMS/OpenMS | src/pyOpenMS/docompile.py | .py | 1,316 | 36 | # Python script to compile Cython to C++
#
# this script compiles the *.pyx infile (pyopenms/pyopenms.pyx) to .cpp
#
# It can be run in the build process of pyopenms when manual changes to the pyx
# files need to be made (not recommended!).
#
# == taken from autowrap/Main.py run(), lower part
from __future__ import pri... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/setup.py | .py | 10,514 | 299 | # input-encoding: latin-1
from __future__ import print_function
# windows ?
import sys
iswin = sys.platform == "win32"
# osx ?
isosx = sys.platform == "darwin"
if isosx:
import platform
osx_ver = platform.mac_ver()[0] #e.g. ('10.15.1', ('', '', ''), 'x86_64')
import sys
no_optimization = False
if "--no-opti... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/fix_pyi_imports.py | .py | 341 | 12 | import sys
if __name__ == '__main__':
args = sys.argv[1:]
with open(args[0], 'r') as f:
save = f.readlines()
save.insert(2, 'from pyopenms import * # pylint: disable=wildcard-import; lgtm(py/polluting-import)\n')
save.insert(3, 'import numpy as _np\n')
with open(args[0], 'w') as f:
... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/run_valgrind.sh | .sh | 181 | 10 | #!/bin/sh
valgrind \
--tool=memcheck\
--leak-check=yes\
--error-limit=no \
--suppressions=valgrind-python.supp\
--num-callers=10\
-v\
nosetests -w tests
| Shell |
3D | OpenMS/OpenMS | src/pyOpenMS/requirements_check.py | .py | 1,952 | 56 | import pip
from pip._internal.req.req_file import parse_requirements
from importlib.metadata import version, PackageNotFoundError
from packaging.requirements import Requirement
from packaging.specifiers import SpecifierSet
from packaging.version import Version
import argparse
import sys
def check_dependencies(requirem... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/check_test_coverage.py | .py | 2,428 | 81 | import os
import glob
import pyopenms
toTest = set()
# pyopenms in the ignore list as it is represented twice in
# the pyopenms package
ignore = ["numpy", "np", "re", "os", "types", "sysinfo", "pyopenms"]
for clz_name, clz in pyopenms.__dict__.items():
if clz_name in ignore or clz_name.startswith("__"):
... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/create_cpp_extension.py | .py | 9,387 | 230 | # input-encoding: latin-1
from __future__ import print_function
# use autowrap to generate Cython and .cpp file for wrapping OpenMS:
import autowrap.Main
import autowrap.CodeGenerator
import autowrap.DeclResolver
import glob
import pickle
import os.path
import os
import shutil
import sys
# windows ?
iswin = sys.plat... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/doCythonCompileOnly.py | .py | 1,559 | 53 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
SPDX-License-Identifier: BSD-3-Clause
--------------------------------------------------------------------------
$Maintainer: Hannes Roest $
$Authors: Hannes Roest $
-------------------... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyopenms/_sysinfo.py | .py | 1,460 | 48 | import sys
if sys.platform.startswith("linux"):
import ctypes as c
import ctypes.util
libc = c.CDLL(ctypes.util.find_library("c"))
class SysInfo(c.Structure):
# for libc5: needs padding
padding = 20 - 2 * c.sizeof(c.c_long) - c.sizeof(c.c_int)
_fields_ = [("uptime", c.c_ulo... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyopenms/run_cython.sh | .sh | 162 | 3 | AUTOWRAP=$(python -c "import autowrap; print autowrap.__path__[0]")
cython --cplus pyopenms.pyx -I ../pxds -I $AUTOWRAP/data_files -I $AUTOWRAP/data_files/boost
| Shell |
3D | OpenMS/OpenMS | src/pyOpenMS/pyopenms/__init__.py | .py | 4,800 | 113 | #!/usr/bin/python
# -*- encoding: utf8 -*-
"""Python bindings to the OpenMS C++ library.
The pyOpenMS package contains Python bindings for a large part of the OpenMS
library (https://openms.de) for mass spectrometry based proteomics. It thus
provides providing facile access to a feature-rich, open-source algorithm
lib... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyopenms/_dataframes.py | .py | 5,996 | 163 | """DataFrame export utilities for pyOpenMS.
This module provides utility functions for converting OpenMS data structures to pandas DataFrames.
The get_df() methods are now implemented directly in the Cython classes (MSSpectrum, MSChromatogram,
Mobilogram, MSExperiment, ConsensusMap, FeatureMap, MRMTransitionGroupCP, P... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyopenms/plotting.py | .py | 21,178 | 460 | """Plot MSSpectrum & MSChromatogram data
The MSSpectrum plotting function are adapted from:
Wout Bittremieux. “spectrum_utils: A Python package for mass spectrometry data processing and visualization.”
Plot a single spectrum with plot_spectrum or two with mirror_plot_spectrum, using matplotlib.
"""
# Code adopted fro... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyopenms/Constants.py | .py | 2,568 | 126 |
# @brief Mathematical and physical constants namespace.
#
# This namespace contains definitions for some basic mathematical and physical constants.
# All constants are double precision.
EPSILON = 1e-6
"""EPSILON (used for comparisons)"""
PI = 3.14159265358979323846
"""PI"""
E = 2.718281828459045235
"""Euler's numb... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyopenms/_python_extras.py | .py | 589 | 23 | class SimpleOpenMSSpectraFactory:
@staticmethod
def getSpectrumAccessOpenMSPtr(exp):
is_cached = False
for i in range(exp.size()):
for dp in exp[i].getDataProcessing():
if dp.metaValueExists("cached_data"):
is_cached = True
for chrom in exp.getChromatograms():
... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyTOPP/PeakPickerHiRes.py | .py | 2,971 | 94 | import argparse
import pyopenms as pms
import logging
from common import addDataProcessing, writeParamsIfRequested, updateDefaults
def run_peak_picker(input_map, params, out_path):
spec0 = input_map[0]
if pms.PeakTypeEstimator().estimateType(spec0) == \
pms. SpectrumSett... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyTOPP/FeatureLinkerUnlabeledQT.py | .py | 4,663 | 153 | import argparse
import pyopenms as pms
from common import addDataProcessing, writeParamsIfRequested, updateDefaults
from collections import Counter
def link(in_files, out_file, keep_subelements, params):
in_types = set(pms.FileHandler.getType(in_) for in_ in in_files)
if in_types == set((pms.Type.CONSENSUS... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyTOPP/run_pipeline.sh | .sh | 2,868 | 86 | #!/bin/sh
echo
echo ============================================================
echo PeakPickerHiRes.py
echo ============================================================
echo
python PeakPickerHiRes.py -write_ini pp.ini
python PeakPickerHiRes.py -ini pp.ini -in ../share/OpenMS/examples/peakpicker_tutorial_1_baseline_a... | Shell |
3D | OpenMS/OpenMS | src/pyOpenMS/pyTOPP/common.py | .py | 1,752 | 57 | import sys
import os.path
import pyopenms as pms
import pprint
def addDataProcessing(obj, params, action):
if isinstance(obj, pms.MSExperiment):
result = pms.MSExperiment()
for spec in obj:
spec = _addDataProcessing(spec, params, action)
result.addSpectrum(spec)
else:
... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyTOPP/FileConverter.py | .py | 363 | 14 | # import pyopenms
def main():
import optparse
# in: file
in_formats = "mzData,mzXML,mzML,DTA,DTA2D,mgf,featureXML,consensusXML,"\
"ms2,fid,tsv,peplist,kroenik,edta".split()
# out: file
out_formats = "mzData,mzXML,mzML,DTA2D,mgf,featureXML,"\
"consensusXML".split("... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyTOPP/OpenSwathFeatureXMLToTSV.py | .py | 1,635 | 62 |
import pyopenms
def convert_to_row(first, targ, run_id, keys, filename):
peptide_ref = first.getMetaValue("PeptideRef")
pep = targ.getPeptideByRef(peptide_ref)
full_peptide_name = "NA"
if (pep.metaValueExists("full_peptide_name")):
full_peptide_name = pep.getMetaValue("full_peptide_name")
d... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyTOPP/MRMTransitionGroupPicker.py | .py | 3,349 | 93 |
import sys
import pyopenms
def getTransitionGroup(exp, targeted, key, trgr_ids, chrom_map):
r = pyopenms.MRMTransitionGroupCP()
for tr in trgr_ids:
transition = targeted.getTransitions()[tr]
chrom_idx = chrom_map[ transition.getNativeID() ]
chrom = exp.getChromatograms()[ chrom_idx ]
... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyTOPP/pyTOPPExample.py | .py | 2,095 | 72 | import CTDopts
import sys
from CTDopts.CTDopts import CTDModel, parse_cl_directives
import pyopenms as pms
import logging
from common import addDataProcessing
from CTDsupport import *
def main():
# register command line arguments
model = CTDModel(
name='NameOfThePyTOPPTool', # required
version... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyTOPP/MRMTransitionGroupScorer.py | .py | 5,020 | 127 |
import sys
import pyopenms
def getTransitionGroup(exp, targeted, key, trgr_ids, chrom_map):
r = pyopenms.LightMRMTransitionGroupCP()
r.setTransitionGroupID(key)
for tr in trgr_ids:
transition = targeted.getTransitions()[tr]
chrom_idx = chrom_map[ transition.getNativeID() ]
chrom = ... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyTOPP/MRMMapper.py | .py | 4,562 | 106 | import copy, sys
import pyopenms
"""
python pyTOPP/MRMMapper.py --in ../source/TEST/TOPP/MRMMapping_input.chrom.mzML \
--tr ../source/TEST/TOPP/MRMMapping_input.TraML --out MRMMapper.tmp.out \
&& diff MRMMapper.tmp.out ../source/TEST/TOPP/MRMMapping_output.chrom.mzML
"""
def algorithm(chromatogram_m... | Python |
3D | OpenMS/OpenMS | src/pyOpenMS/pyTOPP/IDMapper.py | .py | 5,044 | 160 | import argparse
import pyopenms as pms
from common import addDataProcessing, writeParamsIfRequested, updateDefaults
def id_mapper(in_file, id_file, out_file, params, use_centroid_rt,
use_centroid_mz, use_subelements ):
in_type = pms.FileHandler.getType(in_file)
protein_ids = []
peptide_ids = []
... | Python |
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