rem stringlengths 1 226k | add stringlengths 0 227k | context stringlengths 6 326k | meta stringlengths 143 403 | input_ids listlengths 256 256 | attention_mask listlengths 256 256 | labels listlengths 128 128 |
|---|---|---|---|---|---|---|
e.printStackTrace(); | e.printStackTrace(); | public void testSendReceiveAsync() throws Exception{ SOAPEnvelope envelope=getBasicEnvelope(); EndpointReference targetEPR = new EndpointReference( AddressingConstants.WSA_TO,"http://127.0.0.1:"+EngineUtils.TESTING_PORT+"/axis/services/EchoXMLService"); Call call = new Call(); ... | 49300 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49300/dfb66e0164052e61c3cdfd8ab51b9ae74478b769/TestSendReceiveAsync.java/clean/dev/scratch/prototype2/src/test/org/apache/axis/clientapi/TestSendReceiveAsync.java | [
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GroovyClassLoader gcl = new GroovyClassLoader(); Class dc = gcl.parseClass("class Test { Long id; Long version; }"); Thread.sleep(1000); Class sc = gcl.parseClass("class TestService { boolean transactional = true;\n" + "def serviceMethod() {'hello'} }"); Thread.sleep(1000); Class c = gcl.parseClass("class TestControlle... | GroovyClassLoader gcl = new GroovyClassLoader(); Class dc = gcl.parseClass("class Test { Long id; Long version; }"); Thread.sleep(1000); Class sc = gcl.parseClass("class TestService { boolean transactional = true;\n" + "def serviceMethod() {'hello'} }"); Thread.sleep(1000); Class c = gcl.parseClass("class TestControlle... | public void testConfigure() throws Exception { GroovyClassLoader gcl = new GroovyClassLoader(); Class dc = gcl.parseClass("class Test { Long id; Long version; }"); Thread.sleep(1000); Class sc = gcl.parseClass("class TestService { boolean transactional = true;\n" + "def serviceMethod() {'hello'} }"); Thr... | 52953 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52953/075145e116446e23fd77adcfc25dab01feb4a27e/GrailsRuntimeConfiguratorTests.java/buggy/test/commons/org/codehaus/groovy/grails/commons/spring/GrailsRuntimeConfiguratorTests.java | [
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public Connection getDriverConnection (String dbUrl, String dbUid, String dbPwd) throws SQLException { | public Connection getDriverConnection(String dbUrl, String dbUid, String dbPwd) throws SQLException { | public Connection getDriverConnection (String dbUrl, String dbUid, String dbPwd) throws SQLException { getDriver(); return DriverManager.getConnection (dbUrl, dbUid, dbPwd); } // getDriverConnection | 50953 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50953/4b7291900ca7b2684a9d46781a450e57a92af66f/DB_Fyracle.java/buggy/dbPort/src/org/compiere/db/DB_Fyracle.java | [
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} try { w.close(); } catch (IOException e) { Logger.error(this, "Cannot close file!: "+e, e); } if(!new File(f).renameTo(new File(filename))) { Logger.error(this, "Could not rename "+f+" to "+filename+" writing peers"); } | OutputStreamWriter w = new OutputStreamWriter(fos); PeerNode[] peers = myPeers; for (int i = 0; i < peers.length; i++) { try { peers[i].write(w); } catch (IOException e) { try { fos.close(); } catch (IOException e1) { Logger.error(this, "Cannot close file!: " + e1, e1); } Logger.error(this, "Cannot write peers to disk:... | void writePeers() { synchronized(writePeersSync) { FileOutputStream fos; String f = filename+".bak"; try { fos = new FileOutputStream(f); } catch (FileNotFoundException e2) { Logger.error(this, "Cannot write peers to disk: Cannot create "+f+" - "+e2, e2); ... | 8026 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8026/80702a95bfbf6119e480a594190a0d68faeb455e/PeerManager.java/buggy/src/freenet/node/PeerManager.java | [
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if (obj instanceof Scriptable) { | try { | public static Object setParent(Object obj, Object value, Scriptable scope) { Scriptable start; if (obj instanceof Scriptable) { start = (Scriptable) obj; } else { start = toObject(scope, obj); } Scriptable result = value == null ? null : toObject(scope, value... | 51275 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51275/48465ddb686f28881238111ef580326ba9e38236/ScriptRuntime.java/buggy/js/rhino/src/org/mozilla/javascript/ScriptRuntime.java | [
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private boolean handleDataRequest(Message m) { | private boolean handleDataRequest(Message m, boolean isSSK) { | private boolean handleDataRequest(Message m) { long id = m.getLong(DMT.UID); if(node.recentlyCompleted(id)) { Message rejected = DMT.createFNPRejectedLoop(id); try { ((PeerNode)(m.getSource())).sendAsync(rejected, null); } catch (NotConnectedException e)... | 48807 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48807/716f3bc8807ebf706adfc867c6d0cf6be34016ab/NodeDispatcher.java/buggy/src/freenet/node/NodeDispatcher.java | [
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parent[nNodes] = -1; | parent[ nNodes ] = -1; | protected static void hbMakeCodeLengths(char[] len, int[] freq, int alphaSize, int maxLen) { /* Nodes and heap entries run from 1. Entry 0 for both the heap and nodes is a sentinel. */ int nNodes, nHeap, n1, n2, i, j, k; boole... | 55907 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55907/4da7a225ba9c01ca94805923e06e3fb2d46bf201/CBZip2OutputStream.java/buggy/plexus-archiver/src/main/java/org/codehaus/plexus/archiver/bzip2/CBZip2OutputStream.java | [
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img2D = UIHelper.getImage("images/horizontalscatterchartimage.gif"); | img2D = UIHelper.getImage("images/horizontalscatterchartimage.gif"); | public Collection getChartSubtypes(String sDimension, Orientation orientation) { Vector vSubTypes = new Vector(); if (sDimension.equals("2D") || sDimension.equals(ChartDimension.TWO_DIMENSIONAL_LITERAL.getName())) { if (orientation.equals(Orientation.VERTICAL_LITERAL)) ... | 46013 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46013/7793e94b4d7fab5891f226c6c937e37d85bebad8/ScatterChart.java/buggy/chart/org.eclipse.birt.chart.ui.extension/src/org/eclipse/birt/chart/ui/swt/type/ScatterChart.java | [
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public PerlBreakpoint getBreakpointForLocation(IPath fPath, int fLine) { Set breakpoints = getBreakpointsForFile(fPath); Breakpoint bp; if( breakpoints == null) return null; for( Iterator i = breakpoints.iterator(); i.hasNext();) { bp = (Breakpoint) i.next(); if( bp instanceof PerlLineBreakpoint) { i... | 48756 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48756/315099a96227dfcdcb93243ca9dee6d75f267d48/BreakpointMap.java/buggy/org.epic.debug/src/org/epic/debug/BreakpointMap.java | [
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if (member == null || MylarPlugin.getContextManager().getActiveContext() == null) { rest.add(proposal); } else { IMylarElement node = MylarPlugin.getContextManager().getElement( member.getHandleIdentifier()); if (node != null) { float interest = node.getInterest().getValue(); if (interest > MylarContextManager.getScali... | protected List filterAndSortProposals(List proposals, IProgressMonitor monitor, TextContentAssistInvocationContext context) { super.filterAndSortProposals(proposals, monitor, context); if (resolveMemberMethod == null || !MylarPlugin.getContextManager().isContextActive()) return proposals; try { TreeMap<Float,... | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/69b0de2ecd17524d4bbad1579360f0f197c524b0/MylarJavaCompletionProcessor.java/buggy/org.eclipse.mylyn.java.ui/src/org/eclipse/mylyn/internal/java/ui/editor/MylarJavaCompletionProcessor.java | [
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return false; | return true; | public boolean startInWriteAction() { return false; } | 56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/afd5f7448422b5b1094b6d3b0febed868497f331/CreateConstructorParameterFromFieldFix.java/buggy/codeInsight/impl/com/intellij/codeInsight/daemon/impl/quickfix/CreateConstructorParameterFromFieldFix.java | [
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NoItemsMatchException, CannotDisseminateFormatException | NoItemsMatchException, CannotDisseminateFormatException, BadArgumentException | public Map listIdentifiers(String from, String until, String set, String metadataPrefix) throws OAIInternalServerError, NoSetHierarchyException, NoItemsMatchException, CannotDisseminateFormatException { log.info(LogManager.getHeader(null, "oai_request", "verb=listId... | 47214 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47214/564aa767ae3958fb227322d346195962712ce24e/DSpaceOAICatalog.java/buggy/dspace/src/org/dspace/app/oai/DSpaceOAICatalog.java | [
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siteGroups.add(0, createSelect("", "<none>")); | public List getGroups() { List siteGroups = getSiteGroups(); siteGroups.add(0, createSelect("", "<none>")); return siteGroups; } | 48996 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48996/490247fad03bfc8ec44c9213efbe2a86e60bac09/AudienceTool.java/buggy/common/tool-lib/src/java/org/theospi/portfolio/security/tool/AudienceTool.java | [
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EventListenerList list = (EventListenerList) listenerMap.get(element); return list == null ? NULL_ARRAY : list.getListeners(key); } | EventListenerList list = (EventListenerList) _listenerMap.get(element); return list == null ? NULL_ARRAY : list.getListeners(key); } | public MElementListener[] getListeners(Class element, EventKey key) { EventListenerList list = (EventListenerList) listenerMap.get(element); return list == null ? NULL_ARRAY : list.getListeners(key); } | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/1ebb17ac06205415cc8d51f57abdfb1e5ec54d76/UmlModelEventPump.java/clean/src_new/org/argouml/model/uml/UmlModelEventPump.java | [
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return myFile.isModified(); | return FileDocumentManager.getInstance().isFileModified(myFile); | private boolean isModifiedImpl(){ return myFile.isModified(); } | 17306 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17306/b6f949bd73cd0bf50707caab02f05f8c3532dd8b/TextEditorComponent.java/buggy/source/com/intellij/openapi/fileEditor/impl/text/TextEditorComponent.java | [
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} else { final Object[] ret = new Object[1]; final CoreException[] exc = new CoreException[1]; BusyIndicator.showWhile(null, new Runnable() { public void run() { try { ret[0] = element.createExecutableExtension(classAttribute); } catch (CoreException e) { exc[0] = e; } | } final Object[] ret = new Object[1]; final CoreException[] exc = new CoreException[1]; BusyIndicator.showWhile(null, new Runnable() { public void run() { try { ret[0] = element.createExecutableExtension(classAttribute); } catch (CoreException e) { exc[0] = e; | public static Object createExtension(final IConfigurationElement element, final String classAttribute) throws CoreException { try { // If plugin has been loaded create extension. // Otherwise, show busy cursor then create extension. if(BundleUtility.isActivated(element.getDeclaringExtension().getNamespace())) {... | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/0694eccfbe031ada7c90d8bdca8e6184aa3b5b2c/WorkbenchPlugin.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/WorkbenchPlugin.java | [
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public Power(Expression left, Expression right) { super(left, right); } | public Power( Expression left, Expression right ) { super(left, right); } | public Power(Expression left, Expression right) { super(left, right); } | 57371 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57371/4aaf60d8fa76687c3492c508dd98678fbbd3d935/Power.java/buggy/jmock/examples/calculator/src/org/jmock/examples/calculator/expression/Power.java | [
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AST tmp351_AST_in = (AST)_t; | AST tmp350_AST_in = (AST)_t; | public final void procedurestate(AST _t) throws RecognitionException { AST procedurestate_AST_in = (_t == ASTNULL) ? null : (AST)_t; AST p = null; AST __t164 = _t; p = _t==ASTNULL ? null :(AST)_t; match(_t,PROCEDURE); _t = _t.getFirstChild(); if ( inputState.guessing==0 ) { tpSupport.procedure(p); } AST... | 13952 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13952/daa15e07422d3491bbbb4d0060450c81983332a4/TreeParser03.java/clean/trunk/org.prorefactor.core/src/org/prorefactor/treeparser03/TreeParser03.java | [
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if (++i <length) { | if (++i < length) { | protected void printEscaped( String source ) throws IOException { int length = source.length(); for ( int i = 0 ; i < length ; ++i ) { int ch = source.charAt(i); if (!XMLChar.isValid(ch)) { if (++i <length) { surrogates(ch, source.charAt(i)); ... | 4434 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4434/54f4239946b55ff27db7627ac6740aff4949f966/XMLSerializer.java/clean/src/org/apache/xml/serialize/XMLSerializer.java | [
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return encode(cx, str, methodId == Id_encodeURI); | return encode(str, methodId == Id_encodeURI); | public Object execMethod(IdFunction f, Context cx, Scriptable scope, Scriptable thisObj, Object[] args) { if (f.hasTag(FTAG)) { int methodId = f.methodId(); switch (methodId) { case Id_decodeURI: case Id_decodeURIComponent: { ... | 51996 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51996/4ad826a35e76cb27011d7ce32f9515c2d80a93c0/NativeGlobal.java/clean/js/rhino/src/org/mozilla/javascript/NativeGlobal.java | [
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getParentPage().setBackgroundColor("#FFFFFF"); | getParentPage().setBackgroundColor("#FFFFFF"); | public void main(IWContext iwc) throws Exception { add(IWDeveloper.getTitleTable(this.getClass())); getParentPage().setBackgroundColor("#FFFFFF"); Form form = new Form(); form.maintainParameter(IWDeveloper.actionParameter); add(form); Table table = new Table(); table.setAlignment(3, 1, "right"); form.add(t... | 11362 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11362/3ca1d274c003725a3259e54bc06f6d9925e3fd23/Caches.java/clean/src/java/com/idega/development/presentation/Caches.java | [
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}catch(InterruptedException ie){ | } catch (InterruptedException ie) { | public void run() { while (!killed) { String name= null; String file= null; if (batchList.size() >= 2) { synchronized (batchList) { name= (String)batchList.remove(0); file= (String)batchList.remove(0); } ISoundBuffer buffer= null; if (file.endsWith(".wav")) { System.out.println("Loading ... | 19503 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19503/b97988259f6fb4270071d99b9d20356fa546a79a/OnDemandSoundLoader.java/buggy/src/com/jme/sound/utils/OnDemandSoundLoader.java | [
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tmm.setFlags(messageRow.getMessageFlags().getFlagsObject(), true); } | tmm.setFlags(messageRow.getMessageFlags().getFlagsObject(), true); } | public static TorqueMimeMessage createMessage(MessageRow messageRow, Log log) throws TorqueException, MessagingException { TorqueMimeMessage tmm=new TorqueMimeMessage(); List headers=messageRow.getMessageHeaders(new Criteria().addAscendingOrderByColumn(MessageHeaderPeer.LINE_NUMBER)); ... | 47102 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47102/13904ab6daa0ed83ea319a401a618ed457000604/TorqueMimeMessage.java/buggy/sandbox/imap-integration/src/java/org/apache/james/mailboxmanager/torque/TorqueMimeMessage.java | [
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typeSymbol = ((IContainerSymbol)typeSymbol).lookup( current.getImage()); | typeSymbol = ((IContainerSymbol)typeSymbol).lookup( image ); | public IASTSimpleTypeSpecifier createSimpleTypeSpecifier( IASTScope scope, Type kind, ITokenDuple typeName, boolean isShort, boolean isLong, boolean isSigned, boolean isUnsigned, boolean isTypename, boolean isComplex, boolean isImaginary) throws ASTSemanticException ... | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/51131345dbaa12f210adc03b3ad05a951d937464/CompleteParseASTFactory.java/clean/core/org.eclipse.cdt.core/parser/org/eclipse/cdt/internal/core/parser/ast/complete/CompleteParseASTFactory.java | [
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return TA_RetCode.TA_SUCCESS; } | tempReal = (tempReal*constDiff)+constMax; tempReal *= tempReal; prevKAMA = ((inReal[today++]-prevKAMA)*tempReal) + prevKAMA; while( today <= startIdx ) { tempReal = inReal[today]; tempReal2 = inReal[trailingIdx++]; periodROC = tempReal-tempReal2; sumROC1 -= Math.abs (trailingValue-tempReal2); sumROC1 += Math.abs (te... | public TA_RetCode KAMA(int startIdx, int endIdx, double inReal[], int optInTimePeriod, MInteger outBegIdx, MInteger outNbElement, double outReal[]) { final double constMax = 2.0 / (30.0 + 1.0); final double constDiff = 2.0 / (2.0 + 1.0) - constMax; double tempReal, tempReal2; double sumROC1, periodROC, prevKAM... | 7231 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7231/5df8081f2a7211016256c0f481213a987e02947a/Core.java/clean/ta-lib/java/src/TA/Lib/Core.java | [
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Transliterator toHTML = BagFormatter.toHTML; | Transliterator toHTML = TransliteratorUtilities.toHTML; | public static void main(String[] args) throws SAXException, IOException { startTime = System.currentTimeMillis(); UOption.parseArgs(args, options); Factory cldrFactory = CLDRFile.Factory.make(options[SOURCEDIR].value, options[MATCH].value); Set alllocales = cldrFactory.getAvailable(); ... | 27800 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/27800/52bcdfe5e692bb7a87e851b40f1fe803956a7b14/GenerateSidewaysView.java/buggy/tools/java/org/unicode/cldr/tool/GenerateSidewaysView.java | [
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suite.addTest(new FormatterRegressionTests("test569")); | suite.addTest(new FormatterRegressionTests("test571")); | public static Test suite() { if (true) { TestSuite suite = new TestSuite("All formatter tests (org.eclipse.jdt.core.tests.formatter)"); suite.addTest(new Suite(FormatterRegressionTests.class)); suite.addTest(CommentsTestSuite.suite()); return suite; } junit.framework.TestSuite suite = new Suite(FormatterReg... | 10698 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10698/be2396778954f7686c95a2d45b5130702d13bfe1/FormatterRegressionTests.java/buggy/org.eclipse.jdt.core.tests.model/src/org/eclipse/jdt/core/tests/formatter/FormatterRegressionTests.java | [
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} } else if (getAromaticCarbonsCount(ac, atoms[i]) < 2 && getAromaticNitrogensCount(ac, atoms[i]) > 1) { | } } else if (getAromaticNitrogensCount(ac, atoms[i]) >= 1) { | public DescriptorValue calculate(AtomContainer ac) throws CDKException { RingSet rs = (new AllRingsFinder()).findAllRings(ac); HueckelAromaticityDetector.detectAromaticity(ac, rs, true); double xlogP = 0; org.openscience.cdk.interfaces.Atom[] atoms = ac.getAtoms(); String symbol = ""; int bondCount = 0; int hsC... | 1306 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1306/11cd872c3dbcc51a117ad375706e7a5334b88daa/XLogPDescriptor.java/clean/src/org/openscience/cdk/qsar/XLogPDescriptor.java | [
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if (list.item(i) instanceof Element) frag.appendChild(list.item(i)); | if ((list.item(i) instanceof Text && !"".equals(list.item(i).getNodeValue())) || list.item(i) instanceof Element) { node = list.item(i); break; } | public void setSourceProperty(SourceProperty sourceproperty) throws SourceException { try { Document doc = sourceproperty.getValue().getOwnerDocument(); DocumentFragment frag = doc.createDocumentFragment(); NodeList list = sourceproperty.getValue().getChildNodes(); ... | 46428 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46428/6d849e013b39dc37e8754a7f2031e59e57a62f52/WebDAVSource.java/clean/src/blocks/webdav/java/org/apache/cocoon/components/source/impl/WebDAVSource.java | [
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String frame = m.getFrame(decompiledLine - currentDecompiledLine); | String [] frame = m.getFrame(decompiledLine - currentDecompiledLine, showQualifiedNames); | public String getFrame(final int decompiledLine) { int currentDecompiledLine = 0; for (int i = 0; i < text.size(); ++i) { Object o = text.get(i); if (o instanceof DecompiledMethod) { DecompiledMethod m = (DecompiledMethod) o; String frame = m.getFram... | 2697 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2697/2c9b996368b513b6c1e6c580c79e8d1aa8fd140e/DecompiledClass.java/buggy/eclipse/plugin/src/de/loskutov/bco/asm/DecompiledClass.java | [
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return sbuf.toString(); | return sbuf.toString(); | public String toString() { StringBuffer sbuf = new StringBuffer(); Enumeration e = lengths.elements(); while (e.hasMoreElements()) { if (sbuf.length()>0) { sbuf.append('+'); } sbuf.append(e.nextElement().toString()); } return sbuf.toString(); } | 5268 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5268/392781f30969e4da0b510da16b96099a320089ba/MixedLength.java/buggy/src/org/apache/fop/datatypes/MixedLength.java | [
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return RubyFixnum.newFixnum(runtime, totalWritten); | return getRuntime().newFixnum(totalWritten); | public IRubyObject write(IRubyObject obj) { checkWriteable(); try { int totalWritten = handler.write(obj.toString()); return RubyFixnum.newFixnum(runtime, totalWritten); } catch (IOError e) { return RubyFixnum.zero(runtime); } catch (ErrnoError e) { ... | 47984 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47984/870e1da9b41bfdbae259e1fc5f18fc8b76686998/RubyIO.java/clean/src/org/jruby/RubyIO.java | [
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private void switchDataSet( String datasetName ) throws ChartException | private int switchDataSet( String datasetName ) throws ChartException | private void switchDataSet( String datasetName ) throws ChartException { if ( getDataServiceProvider( ).getBoundDataSet( ) != null && getDataServiceProvider( ).getBoundDataSet( ) .equals( datasetName ) ) { return; } try { bCancel = Window.OK; String oldDataSetName = getDataServiceProvider( ).getBoun... | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/f22856fad0fdeea0d938039071c0ce6da2b23e4f/TaskSelectData.java/buggy/chart/org.eclipse.birt.chart.ui.extension/src/org/eclipse/birt/chart/ui/swt/wizard/TaskSelectData.java | [
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return latest_date_time != null; | return data_manager.latest_date_time() != null; | public boolean ready_for_request() { // latest_date_time != null iff send_data_request has // been successfully called. return latest_date_time != null; } | 13245 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13245/b391edecc87899db4a9099fc02028eb0e819ce15/Chart.java/buggy/src/clients/mas_gui/Chart.java | [
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throw je; | state.setCurrentException(je); | public void execute(EvaluationState state, InstructionContext ctx) { // now used as an interpreter event JumpException je = new JumpException(JumpException.JumpType.RedoJump); je.setSecondaryData(ctx); throw je; } | 1060 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1060/ed5fe768829dd43ebf13861d9031b19571d6e898/EvaluateVisitor.java/buggy/src/org/jruby/evaluator/EvaluateVisitor.java | [
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bWasCancelled = true; | bWasCancelled = false; | public void widgetSelected(SelectionEvent e) { if (e.getSource().equals(cbCyclic)) { gCurrent.setCyclic(cbCyclic.getSelection()); } else if (e.getSource().equals(btnAccept)) { bWasCancelled = true; shell.dispose(); } else if (e.get... | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/82edcc17a5f7fd43b8e0179a398bcd092111db6d/GradientEditorDialog.java/buggy/chart/org.eclipse.birt.chart.ui.extension/src/org/eclipse/birt/chart/ui/swt/composites/GradientEditorDialog.java | [
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if (debug) System.out.println("calling OpenlabReader.initFile(" + id + ")"); | if (debug) debug("initFile(" + id + ")"); | protected void initFile(String id) throws FormatException, IOException { if (debug) System.out.println("calling OpenlabReader.initFile(" + id + ")"); super.initFile(id); in = new RandomAccessStream(getMappedId(id)); in.skipBytes(4); byte[] b = new byte[4]; in.read(b); String s = new String(b); ... | 11426 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11426/2c680a5618955854e02d652bc68024b9a011950a/OpenlabReader.java/clean/loci/formats/in/OpenlabReader.java | [
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new Parameter("java/lang/Object", "delegate")}; | new Parameter("java.lang.Object", "delegate")}; | protected ClassNode createClosureClass(ClosureExpression expression) { ClassNode owner = classNode; if (owner instanceof InnerClassNode) { owner = owner.getOuterClass(); } String outerClassName = owner.getName(); String name = outerClassName + "$" + context.getNextInner... | 6462 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6462/764ab7a732a72c0585966fcbb62c2b30466738c9/ClassGenerator.java/clean/src/main/org/codehaus/groovy/classgen/ClassGenerator.java | [
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return lex_p != lex_pend && c == lex_curline.charAt(lex_p); | return source.isNext((char) c); | private boolean peek(int c) { return lex_p != lex_pend && c == lex_curline.charAt(lex_p); } | 45298 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45298/d31a76ee29d5978a9bec41e3ac9134cee024bcab/DefaultRubyScanner.java/buggy/org/jruby/parser/DefaultRubyScanner.java | [
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checkItem(items.item(0), title, author, pubDate, description, "http: | checkItem(items.item(0), title, author, pubDate, description, "http: | public void testOneNewPage() throws Exception { NodeList items = getReportedItems("|MyNewPage|me|" + date + "|"); assertEquals(1, items.getLength()); String title = "MyNewPage"; String author = "me"; String pubDate = rfcDate; String description = "me:" + rfcDate; ... | 53022 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53022/59b5c516aa1e48abf081d18257e2b7c16b352512/RssResponderTest.java/buggy/src/fitnesse/responders/RssResponderTest.java | [
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public void cleanupPointers() { } | public void cleanupPointers() { } | public void cleanupPointers() { } //- implements VM_GCMapIterator | 49871 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49871/c9c261ed512532b69878bcdbbedd8afe69adc0b5/VM_JNIGCMapIterator.java/buggy/rvm/src/vm/arch/intel/jni/VM_JNIGCMapIterator.java | [
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assertEquals("expected target 'MyBar.aj' but target " + link.getName(), "MyBar.aj",link.getName()); | assertEquals("expected target 'MyBar.class' but target " + link.getName(), "MyBar.class",link.getName()); | public void testAspectPathRelWhenNotFillingInModel_pr141730() { World.createInjarHierarchy = false; try { runTest("ensure aspectpath injar relationships are correct when not filling in model"); // expecting: // sourceOfRelationship main in MyFoo.java // relationship advised by // ... | 53148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53148/9b03811333687b7a41baa1b9c9ff84344df86bbc/Ajc152Tests.java/clean/tests/src/org/aspectj/systemtest/ajc152/Ajc152Tests.java | [
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return (InetAddress)impl.getOption(SocketOptions.SO_BINDADDR); | return (InetAddress)impl.getOption(SocketOptions.SO_BINDADDR); | public InetAddress getLocalAddress() { // FIXME: JCL p. 510 says this should call checkConnect. But what // string should be used as the hostname? Maybe this is just a side // effect of calling InetAddress.getLocalHost. // // And is getOption with SO_BINDADDR the right way to get the address? // ... | 56365 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56365/bcf934a726f09b909edaefea311bbb71e1745e81/DatagramSocket.java/buggy/libjava/java/net/DatagramSocket.java | [
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expandViewer(filteredViewer, STORE_EXPANDED_CATEGORIES_ID); if (unfilteredViewer != null) expandViewer(unfilteredViewer, STORE_EXPANDED_CATEGORIES_ID); | boolean showAll = settings.getBoolean(SHOW_ALL_ENABLED); showAllCheck.setSelection(showAll); contentProvider.setFiltering(!showAll); String[] expandedCategoryPaths = settings.getArray(STORE_EXPANDED_CATEGORIES_ID); if (expandedCategoryPaths == null || expandedCategoryPaths.length == 0) return; List categoriesToExpan... | protected void expandPreviouslyExpandedCategories() { expandViewer(filteredViewer, STORE_EXPANDED_CATEGORIES_ID); if (unfilteredViewer != null) expandViewer(unfilteredViewer, STORE_EXPANDED_CATEGORIES_ID); } | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/cdc590064230a8543dcd910f93596ce961da1d7e/NewWizardNewPage.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/dialogs/NewWizardNewPage.java | [
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node.nodeUpdater = new NodeUpdater(node , sc.getBoolean("autoupdate"), new FreenetURI(sc.getString("URI")), new FreenetURI(sc.getString("revocationURI"))); | node.nodeUpdater = new NodeUpdater(node , false, new FreenetURI(NodeUpdater.UPDATE_URI), new FreenetURI(NodeUpdater.REVOCATION_URI)); | public void set(boolean val) throws InvalidConfigValueException { synchronized (node) { if(val == get()) return; if(val){ try{ SubConfig sc = nodeConfig.get("node.updater"); if(node.nodeUpdater != null) node.nodeUpdater.kill(); node.nodeUpdater = new NodeUpdater(node , sc.getBoolean("autoupdat... | 50653 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50653/076b0867c113941335061363716c84e84918007c/UpdaterEnabledCallback.java/buggy/src/freenet/node/updater/UpdaterEnabledCallback.java | [
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System.out.println("Got oid "+rs.getInt(1)); | public void displayImage(String name) { try { System.out.println("Selecting oid for "+name); ResultSet rs = stat.executeQuery("select imgoid from images where imgname='"+name+"'"); if(rs!=null) { // Even though there should only be one image, we still have to // cycle through the ResultSet while(rs... | 45534 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45534/02faee5eaa0ed93364446f5c186fa6904899dca6/ImageViewer.java/clean/src/interfaces/jdbc/example/ImageViewer.java | [
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ELTableTag.class, null, "setExport")); | ELTableTag.class, null, "setExport")); | public PropertyDescriptor[] getPropertyDescriptors() { List proplist = new ArrayList(); try { proplist.add(new PropertyDescriptor("cellpadding", //$NON-NLS-1$ ELTableTag.class, null, "setCellpadding")); //$NON-NLS-1$ proplist.add(new PropertyDescriptor("c... | 10316 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10316/a68c17afdfb7cb08fd50d001fb8260e045a3c5cd/ELTableTagBeanInfo.java/clean/displaytag/src/main/java/org/displaytag/tags/el/ELTableTagBeanInfo.java | [
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int pos = line.indexOf(BND); | int pos = line.indexOf(BND_STR); | public static String readAll(BufferedReader br, StringBuffer xml, StringBuffer acl, StringBuffer type) throws IOException { //For the Control of sintaxis String host = null; //boolean foundMime = false; boolean foundBoundary = false; boolean findContentType = false; String bounda... | 5505 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5505/4596fdc09bf47df374e15fc0f9ef4b9837aa589d/HTTPIO.java/buggy/src/jade/mtp/http/HTTPIO.java | [
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return jjMoveStringLiteralDfa6_0(active0, 0x10000000000L); | return jjMoveStringLiteralDfa6_0(active0, 0x20000000000L); | private final int jjMoveStringLiteralDfa5_0(long old0, long active0){ if (((active0 &= old0)) == 0L) return jjStartNfa_0(3, old0); try { curChar = input_stream.readChar(); } catch(java.io.IOException e) { jjStopStringLiteralDfa_0(4, active0); return 5; } switch(curChar) { case 100: ... | 9291 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9291/b827d0bf89e728dc8324fc63c2ad3662c9d19cd3/ParserTokenManager.java/buggy/src/java/org/apache/velocity/runtime/parser/ParserTokenManager.java | [
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logger.severe(ZoneTableFields.AREATYPE + | logger.fatal(ZoneTableFields.AREATYPE + | private void getZoneRelatedData(TableDataSet zoneTable) { int k; int parkRateFieldPosition = zoneTable.getColumnPosition(ZoneTableFields.PARKRATE); if (parkRateFieldPosition <= 0) { logger.severe(ZoneTableFields.PARKRATE + " was not a field in the zoneData TableDataSet... | 1120 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1120/ca343a527cdff81450c6dae2017cdd7596546cc4/ZonalDataManager.java/clean/src/java/com/pb/morpc/models/ZonalDataManager.java | [
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if (txt == null) result = false; | protected boolean checkState() { boolean result = false; if (emptyStringAllowed) result = true; if (textField == null) result = false; String txt = textField.getText(); if (txt == null) result = false; result = (txt.trim().length() > 0) || e... | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/27496bae6c5eef81cce6920f43a9bed7f85f2ac8/StringFieldEditor.java/clean/bundles/org.eclipse.jface/src/org/eclipse/jface/preference/StringFieldEditor.java | [
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if (e == -1) { if (decimal == chars.length - 2 && chars[chars.length-1] == '0') { return new String(chars, 0, chars.length - 2); | if (base != 10) { /* Monkey see, Rhino do */ if (d < 0) return "-" + Long.toString( ((long)-d) & 0xFFFFFFFFL, base); else return Long.toString( ((long)d) & 0xFFFFFFFFL, base); } else { final int MIN_NO_EXP = -6; final int MAX_NO_EXP = 20; String s = Double.toString(d); char[] chars = s.toCharArray(); int decim... | public static String numberToString(double d) { if (d != d) return "NaN"; if (d == Double.POSITIVE_INFINITY) return "Infinity"; if (d == Double.NEGATIVE_INFINITY) return "-Infinity"; if (d == 0.0) return "0"; // Okay, this is gross. But ... | 7555 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7555/4bf675b98aeb91f7b1aa93aa6af7bc7944745bed/ScriptRuntime.java/clean/js/rhino/org/mozilla/javascript/ScriptRuntime.java | [
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String actualPage = hrq.getContextPath() + JSPManager.getLocalJSP(page); | String actualPage = hrq.getContextPath() + page; | public int doAfterBody() throws JspException { /* * The output is the following, with PAGE and TEXT replaced appropriately: * * <SCRIPT TYPE="text/javascript"> * <!-- * document.write('<A HREF="#" onClick="var popupwin = window.open(\'PAGE\',\'dspacepopup\',... | 25205 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/25205/1b48943aebc5bc04c66710438589dc0210ba2eee/PopupTag.java/clean/dspace/src/org/dspace/app/webui/jsptag/PopupTag.java | [
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} catch ( Exception except ) { } | } catch ( Exception except ) { } | private static void initialize() { InputStream is = null; BufferedReader reader = null; int index; String name; String value; int code; String line; // Make sure not to initialize twice. if ( _b... | 1831 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1831/af047e33ee4283cd437ffa6760ccff3d3d2bf9ea/HTMLdtd.java/clean/src/org/apache/xml/serialize/HTMLdtd.java | [
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{ close(); } | { close(); } | public void finalize() throws Throwable { close(); } | 49504 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49504/e25c93c7eb4a9a1a50b771cc33448b9d3519f403/Connection.java/buggy/src/interfaces/jdbc/org/postgresql/Connection.java | [
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Object data[]; ArrayList list; | Object[] data; java.util.AbstractList list; | protected HashMap constructSystemDict() { HashMap systemDict = new HashMap(); // newpath systemDict.put("newpath", new PACommand() { public void execute(PAContext context) throws PainterException {// if(DebugExecution)System.out.println(""); context.pencil.newpath(); } }); // mo... | 4174 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4174/f1bf50c651cb7c4f69dfb32ac954ac18bacdb38c/PAContext.java/clean/src/com/lowagie/text/pdf/codec/postscript/PAContext.java | [
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String attrUri = attrUriIndex != -1 | String attrUri = attrUriIndex != -1 && namespaces | public void startElement(int elementType, XMLAttrList attrList, int attrListIndex) throws Exception { // parameters String name = fStringPool.toString(elementType); AttributeList attrs = attrList.getAttributeList(attrListIndex); // perform callback if (DEBUG_CALLBACKS) { ... | 4434 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4434/3e70054e9651128ce312f1bd3ff0141acc90e6e8/SAXParser.java/buggy/src/org/apache/xerces/parsers/SAXParser.java | [
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color.setChoiceSet( ChoiceSetFactory.getElementChoiceSet( ReportDesignConstants.STYLE_ELEMENT, StyleHandle.COLOR_PROP ) ); | color.setChoiceSet( ChoiceSetFactory.getElementChoiceSet( ReportDesignConstants.STYLE_ELEMENT, StyleHandle.COLOR_PROP ) ); | protected Control createContents( Composite parent ) { GridData gdata; GridLayout glayout; createTitleArea( parent ); Composite composite = new Composite( parent, 0 ); glayout = new GridLayout( ); glayout.marginHeight = 0; glayout.marginWidth = 0; glayout.verticalSpacing = 0; composite.setLayout( glayout ); ... | 46013 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46013/1cbdabafb0e6f5e8a50eeb05f5cc3d2a2fff1551/HighlightRuleBuilder.java/clean/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/ui/dialogs/HighlightRuleBuilder.java | [
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{ if (fields == null) throw new PSQLException("postgresql.con.tuple"); Object tuple = pg_stream.ReceiveTuple(fields.length, isBinary); if (isBinary) binaryCursor = true; if (maxRows == 0 || tuples.size() < maxRows) tuples.addElement(tuple); } | { if (fields == null) throw new PSQLException("postgresql.con.tuple"); Object tuple = pg_stream.ReceiveTuple(fields.length, isBinary); if (isBinary) binaryCursor = true; if (maxRows == 0 || tuples.size() < maxRows) tuples.addElement(tuple); } | private void receiveTuple(boolean isBinary) throws SQLException { if (fields == null) throw new PSQLException("postgresql.con.tuple"); Object tuple = pg_stream.ReceiveTuple(fields.length, isBinary); if (isBinary) binaryCursor = true; if (maxRows == 0 || tuples.size() < maxRows) tuples.addElement(tuple); } | 46409 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46409/ef7d7910745cf2812007668138eaaf0a8e1d8d99/QueryExecutor.java/buggy/src/interfaces/jdbc/org/postgresql/core/QueryExecutor.java | [
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else if (pixels instanceof short[]) { short[] s = (short[]) pixels; if (s.length > w*h) { short[] tmp = s; s = new short[w*h]; System.arraycopy(tmp, 0, s, 0, s.length); } | else { if (stackO == null) stackO = new ImageStack(w, h); ip = new ColorProcessor(w, h); byte[][] pix = new byte[c][w*h]; if (r.isInterleaved(id)) { for (int k=0; k<bytes.length; k+=c) { for (int l=0; l<c; l++) { pix[l][k / 3] = bytes[k + l]; } } } else { for (int k=0; k<c; k++) { System.arraycopy(bytes, 0, pix[k], 0, ... | public void run(String arg) { boolean quiet = arg != null && !arg.equals(""); String options = Macro.getOptions(); // -- Step 1: get filename to open -- String id = null; // try to get filename from argument if (quiet) id = arg; if (id == null) { // try to get filename from macro options ... | 46826 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46826/e206452be43c8e5f32e884d183e79d865fed25ca/Importer.java/buggy/loci/plugins/Importer.java | [
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if (_state==STATE_EOF_CONTENT) | if (_state==STATE_CONTENT_PACKET_EOF) | public long parseNext() throws IOException { long totalFilled=-1; if (_buffer==null) { _buffer=_buffers.getBuffer(Ajp13Packet.MAX_PACKET_SIZE); _ajpRequestPacket.setBuffer(_buffer); } if (_state==STATE_END) throw new IllegalStateException("STATE... | 13242 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13242/193de5b32d8185ac51c98b2bd93cf2bf81927970/Ajp13Parser.java/buggy/trunk/extras/ajp/src/main/java/org/mortbay/jetty/ajp/Ajp13Parser.java | [
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"XML node is not an Element or Text node. Only Elements and Text nodes are currently supported. Node class: " | "XML node is not an Element or Text node. Only Elements and " + "Text nodes are currently supported. Node class: " | protected Object getJavaScriptElementFromXmlNode(Node xmlNode, HtmlPage page) { if ( xmlNode == null ) { return null; } if ( ( xmlNode instanceof Element ) == false && ( xmlNode instanceof Text ) == false ) { if( xmlNode instanceof HTMLDocumentImpl == fal... | 3508 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3508/dd08378a7beeec7e434505b75cbb90e156be6e65/HTMLElement.java/clean/htmlunit/src/java/com/gargoylesoftware/htmlunit/javascript/host/HTMLElement.java | [
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whatToMove = new LineRange(document.getLineNumber(lineRangeMarker.getStartOffset()), | toMove = new LineRange(document.getLineNumber(lineRangeMarker.getStartOffset()), | protected void beforeMove(final Editor editor) { super.beforeMove(editor); if (statementToSurroundWithCodeBlock != null) { try { final Document document = PsiDocumentManager.getInstance(statementToSurroundWithCodeBlock.getProject()).getDocument(statementToSurroundWithCodeBlock.getContainingFile()); ... | 12814 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12814/02c2f546504510bdbd05916539ae0061487b89de/StatementMover.java/buggy/source/com/intellij/openapi/editor/actions/moveUpDown/StatementMover.java | [
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if( (ae instanceof Protomech) && (2 == ((Protomech)ae).getCritsHit(Protomech.LOC_HEAD)) ) { mods.addModifier ( ToHitData.IMPOSSIBLE, "No long range attacks with destroyed head sensors." ); | if ((ae instanceof Protomech) && (2 == ((Protomech) ae) .getCritsHit(Protomech.LOC_HEAD))) { mods .addModifier(ToHitData.IMPOSSIBLE, "No long range attacks with destroyed head sensors."); | public static ToHitData getRangeMods(IGame game, Entity ae, int weaponId, Targetable target) { Mounted weapon = ae.getEquipment(weaponId); WeaponType wtype = (WeaponType)weapon.getType(); int[] weaponRanges = wtype.getRanges(); boolean isAttackerInfantry = (ae instanceof Infantry); ... | 4135 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4135/d57cd4104a4f13769e5b9e811ccdf0a82ff9a305/Compute.java/buggy/megamek/src/megamek/common/Compute.java | [
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public static void expand(Rectangle rect, int left, int right, int top, int bottom) { rect.x -= left; rect.width = Math.max(0, rect.width + left + right); rect.y -= top; rect.height = Math.max(0, rect.height + top + bottom); | public static void expand(Rectangle rect, Rectangle differenceRect) { rect.x += differenceRect.x; rect.y += differenceRect.y; rect.height = Math.max(0, rect.height + differenceRect.height); rect.width = Math.max(0, rect.width + differenceRect.width); | public static void expand(Rectangle rect, int left, int right, int top, int bottom) { rect.x -= left; rect.width = Math.max(0, rect.width + left + right); rect.y -= top; rect.height = Math.max(0, rect.height + top + bottom); } | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/2251d3779406f4044b4c8c079789c3559ba90ea5/Geometry.java/buggy/bundles/org.eclipse.jface/src/org/eclipse/jface/util/Geometry.java | [
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return newBignum(ruby, BigInteger.valueOf(value)); } | return newBignum(ruby, BigInteger.valueOf(value)); } | public static RubyBignum newBignum(Ruby ruby, long value) { return newBignum(ruby, BigInteger.valueOf(value)); } | 48072 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48072/1cc89bd397c0f049e6fa3045916fd6d9a3cdada8/RubyBignum.java/clean/org/jruby/RubyBignum.java | [
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Bucket bucket = bf.makeBucket(len); | Bucket bucket; try { bucket = createBucket(bf, len, server); } catch (IOException e) { Logger.error(this, "Bucket error: "+e, e); throw new MessageInvalidException(ProtocolErrorMessage.INTERNAL_ERROR, e.toString(), getIdentifier()); } | public void readFrom(InputStream is, BucketFactory bf) throws IOException { long len = dataLength(); if(len < 0) throw new IllegalArgumentException("Invalid length: "+len); if(len == 0) return; Bucket bucket = bf.makeBucket(len); BucketTools.copyFrom(bucket, is, len); this.bucket = bucket; } | 48807 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48807/c3bd1101bcadc7c347643a2d0afd01491a0565ce/DataCarryingMessage.java/clean/src/freenet/node/fcp/DataCarryingMessage.java | [
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return methodSet; | return new HashSet<Method>(methodSet); | Set<Method> getMethodSet(String memberName) { Set<Method> methodSet = fullNameToMethods.get(memberName); if (methodSet == null) { methodSet = nameToMethods.get(memberName); } if (methodSet == null) { methodSet = new HashSet<Method>(); } return methodSe... | 13291 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13291/7f6789ee6482dc5dae5b794d76b48b0c0ae0dca0/ParentToMethods.java/clean/src/org/jedit/ruby/cache/ParentToMethods.java | [
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Molecule mol = model.getSetOfMolecules().getMolecule(0); assertNotNull(mol); assertEquals(mol.getAtomCount(), 24); assertEquals(mol.getBondCount(), 28); assertTrue(!GeometryTools.has3DCoordinates(mol)); assertTrue(GeometryTools.has2DCoordinates(mol)); } else { logger.error("The CMLReader was not tested with a CML file... | Molecule mol = model.getSetOfMolecules().getMolecule(0); assertNotNull(mol); assertEquals(mol.getAtomCount(), 24); assertEquals(mol.getBondCount(), 28); assertTrue(!GeometryTools.has3DCoordinates(mol)); assertTrue(GeometryTools.has2DCoordinates(mol)); | public void testCuran() { String filename = "data/cmltest/curan.xml"; logger.info("Testing: " + filename); try { File f = new File(filename); if (f.canRead()) { // read the file CMLReader reader = new CMLReader(new FileReader(f)); ... | 46046 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46046/2c7c43d2f4308010328c092f9e157e53e6cab8b2/JumboTest.java/buggy/src/org/openscience/cdk/test/io/cml/JumboTest.java | [
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throw new MessageInvalidException(ProtocolErrorMessage.ERROR_PARSING_NUMBER, "Could not parse DataLength: "+e.toString(), identifier); | throw new MessageInvalidException(ProtocolErrorMessage.ERROR_PARSING_NUMBER, "Could not parse DataLength: "+e.toString(), identifier, global); | public DirectDirPutFile(SimpleFieldSet subset, String identifier, BucketFactory bf) throws MessageInvalidException { super(subset, identifier); String s = subset.get("DataLength"); if(s == null) throw new MessageInvalidException(ProtocolErrorMessage.MISSING_FIELD, "UploadFrom=direct requires a DataLength for "+na... | 49933 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49933/bbb3c23ec38ea1c7abb48040a17f5fc7932248bc/DirectDirPutFile.java/buggy/src/freenet/node/fcp/DirectDirPutFile.java | [
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else if (args[i].equalsIgnoreCase("-u") || args[i].equalsIgnoreCase("--ultra-wideband")) { | else if (args[i].equalsIgnoreCase("-u") || args[i].equalsIgnoreCase("-uwb") || args[i].equalsIgnoreCase("--ultra-wideband")) { | public static void main(String[] args) throws IOException { // make sure we have command args if (args.length < 2) { if (args.length==1 && (args[0].equalsIgnoreCase("-v") || args[0].equalsIgnoreCase("--version"))) { version(); return; } usage(); return; } String infil... | 6221 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6221/55eb35151f5fcff336e27c126b46f489b309cc24/JSpeexEnc.java/buggy/main/trunk/src/JSpeexEnc.java | [
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newReport.clearAttributes(); | public static void setupNewBugAttributes(TaskRepository repository, NewBugzillaReport newReport) { newReport.clearAttributes(); AbstractRepositoryReportAttribute a = new BugzillaReportAttribute(BugzillaReportElement.PRODUCT); List<String> optionValues = BugzillaPlugin.getDefault().getProductConfiguration(repository... | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/bd9ab3a29c773cac8e20028f6d24e407b568a2c2/BugzillaRepositoryUtil.java/buggy/org.eclipse.mylyn.bugzilla.core/src/org/eclipse/mylyn/internal/bugzilla/core/BugzillaRepositoryUtil.java | [
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else if ( rowNum > getMaximum() + 1 ) { | } else if ( rowNum > getMaximum() + 1 ) { | public void fireRowAdded(int rowNum) { final Object item = readItem(rowNum); if ( rowNum >= 0 && rowNum <= getMaximum() + 1 ) // expected; n rows numbered 0 to n - 1 setMaximum(getMaximum() + 1); else if ( rowNum > getMaximum() + 1 ) { setMaximum(rowNum); OutputHandler.out("GC:fRA Warning: ad... | 11319 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11319/4e8951565c3a4c3ec28852963de70b93e6d7880a/GanttChart.java/clean/datagrabber/src/org/cougaar/mlm/ui/newtpfdd/gui/component/GanttChart.java | [
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/* if(Debug.SCROLL_VERIFY) | if(Debug.SCROLL_VERIFY) | public void transactionComplete(Buffer buffer) { if(textArea.getDisplayManager() != DisplayManager.this) { delayedUpdate = false; return; } if(delayedUpdate) doDelayedUpdate(); textArea._finishCaretUpdate(); delayedUpdate = false; //{{{ Debug code /* if(Debug.SCROLL_VERIFY) { int scroll... | 6564 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6564/d179f1bb449c1e8544a803d67a9960e3361d5ce8/DisplayManager.java/clean/org/gjt/sp/jedit/textarea/DisplayManager.java | [
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Object clasrole = Model.getCollaborationsFactory().buildClassifierRole( getHomeModel()); Model.getCollaborationsHelper().addInstance(clasrole, node); | getNodes().add( node); | public void addNode(Object node) { if (canAddNode(node)) { Object clasrole = Model.getCollaborationsFactory().buildClassifierRole( getHomeModel()); Model.getCollaborationsHelper().addInstance(clasrole, node); fireNodeAdded(node); ... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/14c1a90832901151373e2eb7e45cc1d41b38acca/SequenceDiagramGraphModel.java/buggy/src_new/org/argouml/uml/diagram/sequence/SequenceDiagramGraphModel.java | [
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protected void fireStartedEvent(BufferedImage bi) { | protected void fireStartedEvent(BufferedImage bi) throws InterruptedException { | protected void fireStartedEvent(BufferedImage bi) { final Object[] dll = listeners.toArray(); if (dll.length > 0) { final GVTTreeRendererEvent ev = new GVTTreeRendererEvent(this, bi); if (EventQueue.isDispatchThread()) { for (int i = 0; i < dll.length; i++) { ... | 45946 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45946/3e3f50a23a526a85e8762698405cba8d5ed632a8/GVTTreeRenderer.java/buggy/sources/org/apache/batik/swing/gvt/GVTTreeRenderer.java | [
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private FSDirectory getParentDirectoryEntry(String file) throws IOException{ if(file==null){ return null; } final FSEntry dirEntry = getEntry(getParentPath(file)); if (dirEntry == null) { return null; } if (!dirEntry.isDirectory()) { return null; } return dirEntry.getDirectory(); } | private FSDirectory getParentDirectoryEntry(String file) throws IOException { if (file == null) { return null; } final FSEntry dirEntry = getEntry(getParentPath(file)); if (dirEntry == null) { return null; } if (!dirEntry.isDirectory()) { return null; } return dirEntry.getDirectory(); } | private FSDirectory getParentDirectoryEntry(String file) throws IOException{ if(file==null){ return null; } final FSEntry dirEntry = getEntry(getParentPath(file)); if (dirEntry == null) { return null; } if (!dirEntry.isDirectory()) { return null; } return dirEntry.getDirectory(); } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/a8360c0112d9f3686ff1ffe02f6e00dd67c206bf/FileSystemAPIImpl.java/buggy/fs/src/fs/org/jnode/fs/service/def/FileSystemAPIImpl.java | [
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stringBuffer.append(TEXT_141); | stringBuffer.append(TEXT_108); | public String generate(Object argument) { final StringBuffer stringBuffer = new StringBuffer(); final GenCommonBase genElement = (GenCommonBase) ((Object[]) argument)[0];final GenNodeLabel genLabel = (GenNodeLabel) genElement;final ImportAssistant importManager = (ImportAssistant) ((Object[]) argument)[1];GenN... | 7409 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7409/de70953cec74fbba0ed0cfbed37c36c0b594b3db/NodeLabelEditPartGenerator.java/clean/plugins/org.eclipse.gmf.codegen.lite/src-templates/org/eclipse/gmf/codegen/templates/lite/parts/NodeLabelEditPartGenerator.java | [
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return "main"; | return MAIN_PG; | public String processPvtMsgCancel() { LOG.debug("processPvtMsgCancel()"); return "main"; } | 2021 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2021/31f059d4c004601241a992d38669d08dc47f709b/PrivateMessagesTool.java/buggy/msgcntr/messageforums-app/src/java/org/sakaiproject/tool/messageforums/PrivateMessagesTool.java | [
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focusCleared = comp == null; if ( comp != null ) { for ( Container p = comp.getParent(); p != null; p = p.getParent() ) { if ( p instanceof JInternalFrame ) { setFocusOwner( p ); } } } | public void setFocusOwner( Component comp ) { focusCleared = comp == null; if ( comp != null ) { for ( Container p = comp.getParent(); p != null; p = p.getParent() ) { if ( p instanceof JInternalFrame ) { setFocusOwner( p ); } } ... | 19503 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19503/d7a71566653b180308884b6c944cdf4b7f426016/JMEDesktop.java/clean/src/com/jmex/awt/swingui/JMEDesktop.java | [
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loop50: | loop51: | public PatternDescr fact_expression(String id) throws RecognitionException { PatternDescr pd; PatternDescr fe = null; PatternDescr f = null; pd = null; boolean multi = false; try { // /home/michael/projects/jboss-rules/drools-compiler/src/main/... | 31577 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/31577/12c8feffd968f958100f654d836fa3c2ee21ded8/RuleParser.java/buggy/drools-compiler/src/main/java/org/drools/lang/RuleParser.java | [
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final String desiredResult = "Axis #0:" + nl + "{}" + nl + "Axis #1:" + nl + "{[Store].[All Stores]}" + nl + "Axis #2:" + nl + "{[Measures].[Store Sales]}" + nl + "{[Measures].[A]}" + nl + "Row #0: 565,238.13" + nl + "Row #1: 319,494,143,605.90" + nl; runQueryCheckResult("WITH MEMBER [Measures].[A] AS" + nl + " '([Meas... | final String desiredResult = wrap(new String[] { "Axis #0:", "{}", "Axis #1:", "{[Store].[All Stores]}", "Axis #2:", "{[Measures].[Store Sales]}", "{[Measures].[A]}", "Row #0: 565,238.13", "Row #1: 319,494,143,605.90" + nl}); assertQueryReturns( wrap(new String[] { "WITH MEMBER [Measures].[A] AS", " '([Measures].[Store... | public void testMultiplyBug774807() { final String desiredResult = "Axis #0:" + nl + "{}" + nl + "Axis #1:" + nl + "{[Store].[All Stores]}" + nl + "Axis #2:" + nl + "{[Measures].[Store Sales]}" + nl + "{[Measures].[A]}"... | 4891 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4891/3041f930b5fc4bf6aa3339845b828801c1d8b366/FunctionTest.java/clean/testsrc/main/mondrian/olap/fun/FunctionTest.java | [
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final int rowsToAdd = 8; final String theString = "abcdefghijklmnopqrstuvwxyz"; int count = 0; for (int i = 1; i <= rowsToAdd; i++) { pStmt.setInt(1, i); pStmt.setString(2, theString.substring(0, i)); | final int rowsToAdd = 8; final String theString = "abcdefghijklmnopqrstuvwxyz"; int count = 0; for (int i = 1; i <= rowsToAdd; i++) { pStmt.setInt(1, i); pStmt.setString(2, theString.substring(0, i)); | public void testPreparedStatement0008() throws Exception { Connection cx = getConnection(); dropTable("#t0008"); Statement stmt = cx.createStatement(); stmt.executeUpdate("create table #t0008 " + " (i integer not null, " + " s char(10) not null) "); PreparedStatement pStmt = cx.pr... | 2029 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2029/7df6dc0065b654cd4e2b156461e0394d01dd13aa/TimestampTest.java/buggy/src.old/test/freetds/TimestampTest.java | [
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if (this.next != null) { throw new SecurityException("Cannot set next twice"); } | if (this.next != null) { throw new SecurityException( "Cannot set next twice"); } | final void setNext(VmCompiledCode next) { if (this.next != null) { throw new SecurityException("Cannot set next twice"); } this.next = next; } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/50e31eccd50a204db22831206646c58f95c4cc44/VmCompiledCode.java/clean/core/src/core/org/jnode/vm/classmgr/VmCompiledCode.java | [
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CachedUrl url = sau.makeCachedUrl(sau.getAuCachedUrlSet(), file); | CachedUrl url = sau.makeCachedUrl(file); | private void checkUrlContent(String path, int fileNum, int depth, int branchNum, boolean isAbnormal, boolean isDamaged) throws IOException { String file = SimulatedArchivalUnit.SIMULATED_URL_ROOT + path; CachedUrl url = sau.makeCachedUrl(sau.getAuCache... | 8150 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8150/1daae17bba467f29e3575dfd082f58a6511a6679/FuncSimulatedContent.java/clean/test/src/org/lockss/plugin/simulated/FuncSimulatedContent.java | [
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this.lang = lang; } | this.lang = lang; } | public void setLang(ParserLanguage lang) { this.lang = lang; } | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/b811a0479b1c2c7ce6e95c22d0b6d0585297b95e/DOMAST.java/buggy/core/org.eclipse.cdt.ui.tests/src/org/eclipse/cdt/ui/tests/DOMAST/DOMAST.java | [
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String[] oldList = dataSetChooser.getItems( ); | String[] oldList = dataSetChooser.getItems( ); | private void refreshDataSets( ) { String selectedDataSetName = dataSetChooser.getText( ); String[] oldList = dataSetChooser.getItems( ); String[] newList = ChoiceSetFactory.getDataSets( ); if ( oldList.length != newList.length ) { dataSetChooser.setItems( newList ); if ( StringUtil.isBlank( selectedDataSetN... | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/77d7b99c1db9fcaef19117ebec1de4e05da3230c/ParameterDialog.java/clean/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/ui/dialogs/ParameterDialog.java | [
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if(getClassdiagramNode(i).getFigure().getOwner() == m) | if (getClassdiagramNode(i).getFigure().getOwner() == m) | private ClassdiagramNode getClassdiagramNode4owner(Object m) { for(int i=0; i < _layoutedClassNodes.size(); i++) { if (_layoutedClassNodes.elementAt(i) instanceof ClassdiagramNode) if(getClassdiagramNode(i).getFigure().getOwner() == m) return getClassdiagramNode(i... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/ca3bcb5d6dd283c4553bcbfe50b108dc5d499768/ClassdiagramLayouter.java/clean/src_new/org/argouml/uml/diagram/static_structure/layout/ClassdiagramLayouter.java | [
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Class.forName(shortName); shortNameIsAClass = true; | Class.forName(packageName); packageNameIsAClass = true; | createClassNameShort(Class sourceClass) { if (className.indexOf('.') == -1) return className; if (sourceClass.getPackage() != null && sourceClass.getPackage().getName() != null) return className.substring(sourceClass.getPackage().getName().length() + 1); // We have to do this tricker... | 7796 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7796/5979b7373ab067990338a0d357c901d7663ad8a6/SimpleLogger.java/clean/src/org/grlea/log/SimpleLogger.java | [
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SWDownloadCandidate candidate = (SWDownloadCandidate)iterator.next(); | public void rateDownloadScopeList( RatedDownloadScopeList ratedScopeList) { long oldestConnectTime = System.currentTimeMillis() - BAD_CANDIDATE_STATUS_TIMEOUT; synchronized( candidatesLock ) { Iterator iterator = goodCandidatesList.iterator(); while( iterator.hasNext() ... | 52996 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52996/5f5e8532b72a060eacff935799b91c9157882425/SWDownloadFile.java/buggy/src/phex/download/swarming/SWDownloadFile.java | [
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