rem stringlengths 1 226k | add stringlengths 0 227k | context stringlengths 6 326k | meta stringlengths 143 403 | input_ids listlengths 256 256 | attention_mask listlengths 256 256 | labels listlengths 128 128 |
|---|---|---|---|---|---|---|
style.setDateFormatObject( dateFormat ); } else { formatStr = dateFormat.getPattern( ); | protected boolean formatValue( Object value, String formatStr, StyleDesign style, StringBuffer formattedStr ) { if ( value == null ) { return false; } assert style != null && formattedStr != null; assert context.getLocale( ) != null; if ( ( value instanceof Number ) ) { NumberFormatter numberFormat; if ( formatStr == null || formatStr.length( ) == 0 ) { numberFormat = style.getNumberFormatObject( ); //initial number-format for the first time if ( numberFormat == null ) { numberFormat = new NumberFormatter( context.getLocale( ) ); formatStr = style.getNumberFormat( ); if ( formatStr != null ) { numberFormat.applyPattern( formatStr ); } style.setNumberFormatObject( numberFormat ); } else { formatStr = numberFormat.getPattern( ); } } else //deal with value-of for text item { numberFormat = new NumberFormatter( context.getLocale( ) ); numberFormat.applyPattern( formatStr ); } formattedStr.append( numberFormat.format( ( (Number) value ) .doubleValue( ) ) ); } else if ( value instanceof Date ) { DateFormatter dateFormat; if ( formatStr == null || formatStr.length( ) == 0 ) { dateFormat = style.getDateFormatObject( ); //initial date-format for the first time if ( dateFormat == null ) { dateFormat = new DateFormatter( context.getLocale( ) ); formatStr = style.getDateTimeFormat( ); if ( formatStr != null ) { dateFormat.applyPattern( formatStr ); } style.setDateFormatObject( dateFormat ); } else { formatStr = dateFormat.getPattern( ); } } else //deal with value-of for text item { dateFormat = new DateFormatter( context.getLocale( ) ); dateFormat.applyPattern( formatStr ); } formattedStr.append( dateFormat.format( (Date) value ) ); } else if ( value instanceof String ) { StringFormatter stringFormat; if ( formatStr == null || formatStr.length( ) == 0 ) { stringFormat = style.getStringFormatObject( ); //initial string-format for the first time if ( stringFormat == null ) { stringFormat = new StringFormatter( ); //use default stringFormat stringFormat.setLocale( context.getLocale( ) ); //get format pattern from style formatStr = style.getStringFormat( ); if ( formatStr != null ) { stringFormat.applyPattern( formatStr ); } style.setStringFormatObject( stringFormat ); } else { formatStr = stringFormat.getPattern( ); } } else //deal with value-of for text item { stringFormat = new StringFormatter( ); stringFormat.setLocale( context.getLocale( ) ); stringFormat.applyPattern( formatStr ); } formattedStr.append( stringFormat.format( value.toString( ) ) ); } else { formattedStr.append( value.toString( ) ); return false; } if ( formatStr == null || formatStr.length( ) == 0 ) { return false; } return true; } | 5230 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5230/5e9b56cf7b8135282c03b97d8af0909f1c511509/StyledItemExecutor.java/buggy/engine/org.eclipse.birt.report.engine/src/org/eclipse/birt/report/engine/executor/StyledItemExecutor.java | [
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if (streamingAudio) { audioPlayer = new JavaStreamingAudioPlayer(); | if (!streamingAudio) { audioPlayer = new JavaClipAudioPlayer(); | public void startup() { voice.allocate(); if (!getSilentMode()) { if (streamingAudio) { audioPlayer = new JavaStreamingAudioPlayer(); } else if (audioFile != null) { AudioFileFormat.Type type = getAudioType(audioFile); if (type != null) { if (multiAudio) { audioPlayer = new MultiFileAudioPlayer(getBasename(audioFile), type); } else audioPlayer = new SingleFileAudioPlayer(getBasename(audioFile), type); } else { try { audioPlayer = new RawFileAudioPlayer(audioFile); } catch (IOException ioe) { System.out.println("Can't open " + audioFile + " " + ioe); } } } else { try { audioPlayer = voice.getDefaultAudioPlayer(); } catch (InstantiationException e) { e.printStackTrace(); } } } if (audioPlayer == null) { audioPlayer = new NullAudioPlayer(); } voice.setAudioPlayer(audioPlayer); } | 5078 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5078/f0c0b212915ae31e2addd62704b174ca5b21ba7a/FreeTTS.java/clean/com/sun/speech/freetts/FreeTTS.java | [
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public void propertyChange(PropertyChangeEvent event) { if (event.getProperty().equals(TaskListPreferenceConstants.MULTIPLE_ACTIVE_TASKS)) { TaskListView.getFromActivePerspective().togglePreviousAction( !getPreferenceStore().getBoolean(TaskListPreferenceConstants.MULTIPLE_ACTIVE_TASKS)); // TaskListView.getFromActivePerspective().toggleNextAction( // !getPreferenceStore().getBoolean(TaskListPreferenceConstants.MULTIPLE_ACTIVE_TASKS)); // TaskListView.getFromActivePerspective().clearTaskHistory(); getTaskListManager().getTaskActivationHistory().clear(); } // TODO: do we ever get here? if (event.getProperty().equals(MylarPreferenceContstants.PREF_DATA_DIR)) { if (event.getOldValue() instanceof String) { String newDirPath = getDefault().getDataDirectory(); String taskListFilePath = newDirPath + File.separator + DEFAULT_TASK_LIST_FILE; reloadFromNewFolder(taskListFilePath); // if (TaskListView.getFromActivePerspective() != null) { // TaskListView.getFromActivePerspective().clearTaskHistory(); // } } } } | 51989 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51989/4a7b81ac676cbb08499b6fb585026e2cb59f35a9/TasksUiPlugin.java/buggy/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/tasks/ui/TasksUiPlugin.java | [
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SelectionDoubleBox sdb = new SelectionDoubleBox(GroupGroupSetter.FIELDNAME_SELECTION_DOUBLE_BOX,iwrb.getLocalizedString("groupgroupsetter.in","Not in"),iwrb.getLocalizedString("groupgroupsetter.not_in","In")); | SelectionDoubleBox sdb = new SelectionDoubleBox(GroupGroupSetter.FIELDNAME_SELECTION_DOUBLE_BOX,iwrb.getLocalizedString("groupgroupsetter.not_in","Not in"),iwrb.getLocalizedString("groupgroupsetter.in","In")); | private void LineUpElements(IWContext iwc)throws Exception{ Form form = new Form(); Table frameTable = new Table(3,3); frameTable.setWidth(490); frameTable.setHeight(320); frameTable.setStyleClass(mainStyleClass); frameTable.setVerticalAlignment(1,1,Table.VERTICAL_ALIGN_TOP); frameTable.setVerticalAlignment(1,2,Table.VERTICAL_ALIGN_TOP); frameTable.setVerticalAlignment(1,3,Table.VERTICAL_ALIGN_TOP); frameTable.setVerticalAlignment(2,1,Table.VERTICAL_ALIGN_TOP); frameTable.setVerticalAlignment(2,2,Table.VERTICAL_ALIGN_TOP); frameTable.setVerticalAlignment(2,3,Table.VERTICAL_ALIGN_TOP); frameTable.setVerticalAlignment(3,1,Table.VERTICAL_ALIGN_TOP); frameTable.setVerticalAlignment(3,2,Table.VERTICAL_ALIGN_TOP); frameTable.setVerticalAlignment(3,3,Table.VERTICAL_ALIGN_TOP); //frameTable.setBorder(1); SelectionDoubleBox sdb = new SelectionDoubleBox(GroupGroupSetter.FIELDNAME_SELECTION_DOUBLE_BOX,iwrb.getLocalizedString("groupgroupsetter.in","Not in"),iwrb.getLocalizedString("groupgroupsetter.not_in","In")); SelectionBox left = sdb.getLeftBox(); left.setHeight(15); left.setWidth("200"); left.selectAllOnSubmit(); SelectionBox right = sdb.getRightBox(); right.setHeight(15); right.setWidth("200"); right.selectAllOnSubmit(); String stringGroupId = iwc.getParameter(GeneralGroupInfoTab.PARAMETER_GROUP_ID); String stringParentGroupId = iwc.getParameter(GeneralGroupInfoTab.PARENT_GROUP_ID); int groupId = Integer.parseInt(stringGroupId); int parentGroupId = Integer.parseInt(stringParentGroupId); form.addParameter(GeneralGroupInfoTab.PARAMETER_GROUP_ID,stringGroupId); GroupBusiness groupBusiness = getGroupBusiness(iwc); Collection allowedGroupTypes = groupBusiness.getAllAllowedGroupTypesForChildren(parentGroupId, iwc); Iterator iterator = allowedGroupTypes.iterator(); HashMap map = new HashMap(); while (iterator.hasNext()) { String value = ((GroupType) iterator.next()).getType(); map.put(value, value); } // usually the following group type should be already contained Group group = groupBusiness.getGroupByGroupID(groupId); String value = group.getGroupType(); map.put(value, value); Collection directGroups = groupBusiness.getParentGroups(groupId); Iterator iter = null; if(directGroups!=null && !directGroups.isEmpty()){ iter = directGroups.iterator(); while (iter.hasNext()) { Group item = (Group) iter.next(); right.addElement(item.getPrimaryKey().toString(),groupBusiness.getNameOfGroupWithParentName(item)); } } // former: Collection notDirectGroups = getGroupBusiness(iwc).getNonParentGroups(groupId); User user = iwc.getCurrentUser(); UserBusiness userBusiness = getUserBusiness(iwc); Collection notDirectGroups = userBusiness.getUsersTopGroupNodesByViewAndOwnerPermissions(user, iwc); if(notDirectGroups!=null && !notDirectGroups.isEmpty()){ Iterator topGroupsIterator = notDirectGroups.iterator(); List allGroups = new ArrayList(); while (topGroupsIterator.hasNext()) { Group parentGroup = (Group) topGroupsIterator.next(); allGroups.add(parentGroup); Collection coll = groupBusiness.getChildGroupsRecursive(parentGroup); if (coll != null) allGroups.addAll(coll); } if(allGroups != null){ iter = allGroups.iterator(); while (iter.hasNext()) { Group item = (Group) iter.next(); // filter if (map.containsKey(group.getGroupType())) // can not add a text left.addElement(item.getPrimaryKey().toString(), groupBusiness.getNameOfGroupWithParentName(item)); } } } //left.addSeparator(); //right.addSeparator(); Help help = getHelp(HELP_TEXT_KEY); frameTable.setAlignment(2,2,"center"); //frameTable.add("GroupId: "+groupId,2,1); System.out.println("GroupId: "+groupId); frameTable.add(sdb,2,2); SubmitButton save = new SubmitButton(iwrb.getLocalizedString("groupgroupsetter.save","save"),"save","true"); save.setAsImageButton(true); CloseButton close = new CloseButton(iwrb.getLocalizedString("groupgroupsetter.close","close")); close.setAsImageButton(true); frameTable.add(help,1,3); frameTable.add(save,2,3); frameTable.add(Text.NON_BREAKING_SPACE,2,3); frameTable.add(close,2,3); frameTable.setAlignment(2,3,"right"); form.add(frameTable); this.add(form,iwc); } | 53236 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53236/cccbe5c63b78113c2c9a921d81401b3be9f883d7/GroupGroupSetter.java/buggy/src/java/com/idega/user/presentation/GroupGroupSetter.java | [
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public String getHandleIdentifier(Object object) { // we can only create handles for PluginObjectNodes and plugin.xml files if (object instanceof XmlNodeHelper) { return ((XmlNodeHelper) object).getHandle(); } else if (object instanceof PluginObjectNode) { PluginObjectNode node = (PluginObjectNode) object; try { // get the handle for the PluginObjectNode if (node.getModel() == null || node.getModel().getUnderlyingResource() == null || node.getModel().getUnderlyingResource().getFullPath() == null) { // MylarPlugin.log("PDE xml node's resource or model is // null: " + node.getName(), this); return null; } IPath path = new Path(node.getModel().getUnderlyingResource().getFullPath().toString()); IFile file = (IFile) ((Workspace) ResourcesPlugin.getWorkspace()).newResource(path, IResource.FILE); String handle = new XmlNodeHelper(file.getFullPath().toString(), PdeEditingMonitor .getStringOfNode(node).hashCode()).getHandle(); return handle; } catch (Exception e) { MylarStatusHandler.log(e, "pde handle failed"); } } else if (object instanceof File) { // get the handle for the file if it is plugin.xml File file = (File) object; if (file.getFullPath().toString().endsWith("plugin.xml")) return file.getFullPath().toString(); } return null; } | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/b23efbfef800ff6f85224f036d6a11e9fab7acba/PdeStructureBridge.java/clean/org.eclipse.mylyn.resources.ui/src/org/eclipse/mylyn/internal/xml/pde/PdeStructureBridge.java | [
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return getName() + ": " + myField.typeName(); | final ClassRenderer classRenderer = NodeRendererSettings.getInstance().getClassRenderer(); StringBuilder buf = StringBuilderSpinAllocator.alloc(); try { buf.append(getName()); if (classRenderer.SHOW_DECLARED_TYPE) { buf.append(": "); buf.append(myField.typeName()); } return buf.toString(); } finally { StringBuilderSpinAllocator.dispose(buf); } | public String calcValueName() { return getName() + ": " + myField.typeName(); } | 56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/32a454acfd3319bcbe7e1ae0578930d4301cf9aa/FieldDescriptorImpl.java/buggy/debugger/impl/com/intellij/debugger/ui/impl/watch/FieldDescriptorImpl.java | [
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public String getBundleIdentifier(){ return IW_BUNDLE_IDENTIFIER; | public String getBundleIdentifier() { return IW_BUNDLE_IDENTIFIER; | public String getBundleIdentifier(){ return IW_BUNDLE_IDENTIFIER; } | 11359 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11359/cb6dcd77171cd67bc19b093aca767b8c240dff8c/ConfirmDeleteWindow.java/clean/src/java/com/idega/block/cal/presentation/ConfirmDeleteWindow.java | [
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new ColData(TdsData.readData(in, currentToken.dynamParamInfo[i], false), tdsVersion); | new ColData(TdsData.readData(connection, in, currentToken.dynamParamInfo[i], false), tdsVersion); | private void tds5ParamsToken() throws IOException, ProtocolException { if (currentToken.dynamParamInfo == null) { throw new ProtocolException( "TDS 5 Param results token (0xD7) not preceded by param format (0xEC)."); } for (int i = 0; i < currentToken.dynamParamData.length; i++) { currentToken.dynamParamData[i] = new ColData(TdsData.readData(in, currentToken.dynamParamInfo[i], false), tdsVersion); } } | 2029 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2029/f4ca02561623734f948ac817af46e63b233d7b9b/TdsCore.java/buggy/src/main/net/sourceforge/jtds/jdbc/TdsCore.java | [
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private boolean internalBuildChain(X509Certificate x509certificate, Vector vector, boolean signedByAtLeastOneCA, CertDirectoryServiceClient certFinder, | private boolean internalBuildChain(X509Certificate x509certificate, Vector vector, boolean signedByAtLeastOneCA, CertDirectoryServiceClient certFinder, | private boolean internalBuildChain(X509Certificate x509certificate, Vector vector, boolean signedByAtLeastOneCA, CertDirectoryServiceClient certFinder, boolean checkValidity) { Principal principal = x509certificate.getSubjectDN(); Principal principalSigner = x509certificate.getIssuerDN(); if (log.isDebugEnabled()) { log.debug("Build chain: " + principal.getName()); } X500Name x500NameSigner = null; try { x500NameSigner = new X500Name(principalSigner.getName()); } catch(Exception e) { if (log.isWarnEnabled()) { log.warn("Unable to get X500 name - " + e); } } List listSigner = certCache.getCertificates(x500NameSigner); if(principal.equals(principalSigner)) { // Self-signed certificate vector.addElement(x509certificate); CertificateStatus cs = null; if (listSigner != null && listSigner.size() > 0) { cs = (CertificateStatus) listSigner.get(0); } if (cs != null && cs.getCertificateType() == CertificateType.CERT_TYPE_CA) { // This is a trusted certificate authority. signedByAtLeastOneCA = true; } if (log.isDebugEnabled()) { log.debug("Certificate is self issued"); } if (param.isCertAuth && cryptoClientPolicy.isRootCA()) { // If DirectoryKeyStore is used in the context of a Certificate // Authority, then a self-signed certificate is OK. // Self-signed certificate should only be valid if it is type CA String title = CertificateUtility.findAttribute(principalSigner.getName(), "t"); if (title != null && !title.equals(CERT_TITLE_CA)) return false; return true; } else { return signedByAtLeastOneCA; } } //Vector vector1 = (Vector)hashtable.get(principalSigner); if(listSigner == null) { if (log.isDebugEnabled()) { log.debug("No Signer certificate in cache"); } // One intermediate CA may not be in the local keystore. // We need to go to the LDAP server to get the key if we haven't found // a trusted CA yet. if (!signedByAtLeastOneCA) { if (log.isDebugEnabled()) { log.debug("Looking up certificate in directory service"); } String filter = parseDN(principalSigner.toString()); lookupCertInLDAP(filter, certFinder); // Now, seach again. if (checkValidity) { listSigner = certCache.getValidCertificates(x500NameSigner); } else { listSigner = certCache.getCertificates(x500NameSigner); } if (listSigner == null) { // It's OK not to have the full chain if at least one certificate in the // chain is trusted. return signedByAtLeastOneCA; } } else { // It's OK not to have the full chain if at least one certificate in the // chain is trusted. return signedByAtLeastOneCA; } } //Enumeration enumeration = vector1.elements(); Iterator it = listSigner.listIterator(); // Loop through all the issuer keys and check to see if there is at least // one trusted key. while(it.hasNext()) { CertificateStatus cs = (CertificateStatus) it.next(); // no need to check this if it is revoked if (cs.getCertificateTrust().equals(CertificateTrust.CERT_TRUST_REVOKED_CERT) && checkValidity) { continue; } X509Certificate x509certificate1 = (X509Certificate)cs.getCertificate(); java.security.PublicKey publickey = x509certificate1.getPublicKey(); try { x509certificate.verify(publickey); } catch(Exception exception) { if (log.isInfoEnabled()) { log.info("Unable to verify signature: " + exception + " - " + x509certificate1 + " - " + cs.getCertificateAlias()); } continue; } if (cs.getCertificateType() == CertificateType.CERT_TYPE_CA) { // The signing certificate is a CA. Therefore the certificate // can be trusted. signedByAtLeastOneCA = true; } if (log.isDebugEnabled()) { log.debug("Found signing key: " + x509certificate1.getSubjectDN().toString()); } // Recursively build a certificate chain. if(internalBuildChain(x509certificate1, vector, signedByAtLeastOneCA, certFinder, checkValidity)) { vector.addElement(x509certificate); return true; } } if (log.isDebugEnabled()) { log.debug("No valid signer key"); } //return false; return signedByAtLeastOneCA; } | 12869 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12869/abf8ec84b0ce55acd9b190682064774cfa509d0d/DirectoryKeyStore.java/buggy/securityservices/src/org/cougaar/core/security/crypto/DirectoryKeyStore.java | [
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project, | file, | public void run( IProgressMonitor m ) { target[0] = new CDebugTarget( launch, ICDebugTargetType.TARGET_TYPE_LOCAL_CORE_DUMP, cdiTarget, name, null, debuggerProcess, project, true, false ); } | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/f58a8c96eeca7b481e9d58f6aed095487298863c/CDebugModel.java/buggy/debug/org.eclipse.cdt.debug.core/src/org/eclipse/cdt/debug/core/CDebugModel.java | [
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localFile.setText(filter.setExtension(file)); | localFile.setText(filter.setExtension(file)); | private void getPCFile() { String workingDir = System.getProperty("user.dir"); TN5250jFileChooser pcFileChooser = new TN5250jFileChooser(workingDir); // set the file filters for the file chooser filter = getFilterByDescription(); pcFileChooser.addChoosableFileFilter(filter); int ret = pcFileChooser.showSaveDialog(this); // check to see if something was actually chosen if (ret == JFileChooser.APPROVE_OPTION) { File file = pcFileChooser.getSelectedFile(); filter = null; if (pcFileChooser.getFileFilter() instanceof XTFRFileFilter ) filter = (XTFRFileFilter)pcFileChooser.getFileFilter(); else filter = htmlFilter; localFile.setText(filter.setExtension(file)); } } | 4212 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4212/aadd2bf647f858917240790dfcecc8f004d87fa5/XTFRFile.java/buggy/src/org/tn5250j/tools/XTFRFile.java | [
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String useTrustedStr = _context.router().getConfigSetting(PROP_USE_TRUSTED_LINKS); | String useTrustedStr = getContext().router().getConfigSetting(PROP_USE_TRUSTED_LINKS); | public void runJob() { // start up the network comm system _context.commSystem().startup(); _context.tunnelManager().startup(); _context.peerManager().startup(); Job bootDb = new BootNetworkDbJob(_context); boolean useTrusted = false; String useTrustedStr = _context.router().getConfigSetting(PROP_USE_TRUSTED_LINKS); if (useTrustedStr != null) { useTrusted = Boolean.TRUE.toString().equalsIgnoreCase(useTrustedStr); } if (useTrusted) { _log.debug("Using trusted links..."); _context.jobQueue().addJob(new BuildTrustedLinksJob(_context, bootDb)); return; } else { _log.debug("Not using trusted links - boot db"); _context.jobQueue().addJob(bootDb); } } | 3808 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3808/e737e5c9507ed0d463dc9e45a8f63657f466b177/BootCommSystemJob.java/clean/router/java/src/net/i2p/router/startup/BootCommSystemJob.java | [
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char c = event.getActionCommand().charAt(0); if (Character.isISOControl(c)) return; JTextComponent t = getTextComponent(event); if (t != null && t.isEnabled() && t.isEditable()) t.replaceSelection(event.getActionCommand()); | JTextComponent target = getTextComponent(event); if ((target != null) && (event != null)) { if ((target.isEditable()) && (target.isEnabled())) { String content = event.getActionCommand(); int mod = event.getModifiers(); if ((content != null) && (content.length() > 0) && (mod & ActionEvent.ALT_MASK) == 0 && (mod & ActionEvent.CTRL_MASK) == 0) { char c = content.charAt(0); if ((c >= 0x20) && (c != 0x7F)) { target.replaceSelection(content); } } } } | public void actionPerformed(ActionEvent event) { // first we filter the following events: // - control characters // - key events with the ALT modifier (FIXME: filter that too!) char c = event.getActionCommand().charAt(0); if (Character.isISOControl(c)) return; JTextComponent t = getTextComponent(event); if (t != null && t.isEnabled() && t.isEditable()) t.replaceSelection(event.getActionCommand()); } | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/ff4d557efcee4a2c3a25a9cac2252bc626fb10fe/DefaultEditorKit.java/clean/core/src/classpath/javax/javax/swing/text/DefaultEditorKit.java | [
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getVirtualMachineProxy().logThreads(); | virtualMachineProxy.logThreads(); | private E invokeMethodAndFork(final SuspendContextImpl context) throws InvocationException, ClassNotLoadedException, IncompatibleThreadStateException, InvalidTypeException { final int invokePolicy = getInvokePolicy(context); final Exception[] exception = new Exception[1]; final Value[] result = new Value[1]; DebugProcessImpl.this.getManagerThread().startLongProcessAndFork(new Runnable() { public void run() { ThreadReferenceProxyImpl thread = context.getThread(); try { try { if (LOG.isDebugEnabled()) { getVirtualMachineProxy().logThreads(); LOG.debug("Invoke in " + thread.name()); LOG.assertTrue(thread.isSuspended(), thread.toString()); LOG.assertTrue(context.isEvaluating()); } result[0] = invokeMethod(invokePolicy); if(result[0] instanceof ObjectReference) { context.keep(((ObjectReference)result[0])); } } finally { LOG.assertTrue(thread.isSuspended(), thread.toString()); LOG.assertTrue(context.isEvaluating()); } } catch (Exception e) { exception[0] = e; } } }); if (exception[0] != null) { if (exception[0] instanceof InvocationException) { throw (InvocationException)exception[0]; } else if (exception[0] instanceof ClassNotLoadedException) { throw (ClassNotLoadedException)exception[0]; } else if (exception[0] instanceof IncompatibleThreadStateException) { throw (IncompatibleThreadStateException)exception[0]; } else if (exception[0] instanceof InvalidTypeException) { throw (InvalidTypeException)exception[0]; } else if (exception[0] instanceof RuntimeException) { throw (RuntimeException)exception[0]; } else { LOG.assertTrue(false); } } return (E)result[0]; } | 12814 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12814/153769f68e9bcb7188e6e0289d821933d4d9a7df/DebugProcessImpl.java/clean/source/com/intellij/debugger/engine/DebugProcessImpl.java | [
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shapeFileName = props.getProperty(realPrefix + shapeFileProperty); spatialIndexFileName = props.getProperty(realPrefix + spatialIndexProperty); | shapeFileName = props.getProperty(realPrefix + shapeFileProperty); spatialIndexFileName = props.getProperty(realPrefix + spatialIndexProperty); | public void setProperties(String prefix, Properties props) { super.setProperties(prefix, props); String realPrefix = PropUtils.getScopedPropertyPrefix(this); shapeFileName = props.getProperty(realPrefix + shapeFileProperty); spatialIndexFileName = props.getProperty(realPrefix + spatialIndexProperty); if (shapeFileName != null && !shapeFileName.equals("")) { if (spatialIndexFileName != null && !spatialIndexFileName.equals("")) { spatialIndex = SpatialIndex.locateAndSetShapeData(shapeFileName, spatialIndexFileName); } else { spatialIndex = SpatialIndex.locateAndSetShapeData(shapeFileName); } imageURLString = props.getProperty(realPrefix + pointImageURLProperty); try { if (imageURLString != null && !imageURLString.equals("")) { URL imageURL = LayerUtils.getResourceOrFileOrURL(this, imageURLString); ImageIcon imageIcon = new ImageIcon(imageURL); spatialIndex.setPointIcon(imageIcon); } } catch (MalformedURLException murle) { Debug.error("ShapeLayer.setProperties: point image URL not so good: \n\t" + imageURLString); } catch (NullPointerException npe) { // May happen if not connected to the internet. fireRequestMessage("Can't access icon image: \n" + imageURLString); } } else { Debug.error("One of the following properties was null or empty:"); Debug.error("\t" + realPrefix + shapeFileProperty); Debug.error("\t" + realPrefix + spatialIndexProperty); } drawingAttributes = new DrawingAttributes(prefix, props); shadowX = LayerUtils.intFromProperties(props, realPrefix + shadowXProperty, 0); shadowY = LayerUtils.intFromProperties(props, realPrefix + shadowYProperty, 0); } | 47208 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47208/edbeffa6fb72058fbd5312d50c86c88fa8d47f6b/ShapeLayer.java/buggy/src/openmap/com/bbn/openmap/layer/shape/ShapeLayer.java | [
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cdOffset = new ZipLong(written); | cdOffset = written; | public void finish() throws IOException { closeEntry(); cdOffset = new ZipLong(written); for (int i = 0; i < entries.size(); i++) { writeCentralFileHeader((ZipEntry) entries.elementAt(i)); } cdLength = new ZipLong(written - cdOffset.getValue()); writeCentralDirectoryEnd(); offsets.clear(); entries.removeAllElements(); } | 506 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/506/a05d1f12196d34b23d4ab80c3598f6fb63410ac5/ZipOutputStream.java/buggy/src/main/org/apache/tools/zip/ZipOutputStream.java | [
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return TextProcessor.process(sb.toString(), TextProcessor.getDefaultDelimiters() + "]"); | return TextProcessor.process(sb.toString(), TextProcessor.getDefaultDelimiters() + "[]"); | private String calcText(int index, EditorHistoryItem item) { StringBuffer sb = new StringBuffer(); int mnemonic = index + 1; sb.append(mnemonic); if (mnemonic <= MAX_MNEMONIC_SIZE) { sb.insert(sb.length() - (mnemonic + "").length(), '&'); //$NON-NLS-1$ } sb.append(" "); //$NON-NLS-1$ // IMPORTANT: avoid accessing the item's input since // this can require activating plugins. // Instead, ask the item for the info, which can // consult its memento if it is not restored yet. String fileName = item.getName(); String pathName = item.getToolTipText(); if (pathName.equals(fileName)) { // tool tip text isn't necessarily a path; // sometimes it's the same as name, so it shouldn't be treated as a path then pathName = ""; //$NON-NLS-1$ } IPath path = new Path(pathName); // if last segment in path is the fileName, remove it if (path.segmentCount() > 1 && path.segment(path.segmentCount() - 1).equals(fileName)) { path = path.removeLastSegments(1); pathName = path.toString(); } if ((fileName.length() + pathName.length()) <= (MAX_TEXT_LENGTH - 4)) { // entire item name fits within maximum length sb.append(fileName); if (pathName.length() > 0) { sb.append(" ["); //$NON-NLS-1$ sb.append(pathName); sb.append("]"); //$NON-NLS-1$ } } else { // need to shorten the item name int length = fileName.length(); if (length > MAX_TEXT_LENGTH) { // file name does not fit within length, truncate it sb.append(fileName.substring(0, MAX_TEXT_LENGTH - 3)); sb.append("..."); //$NON-NLS-1$ } else if (length > MAX_TEXT_LENGTH - 7) { sb.append(fileName); } else { sb.append(fileName); int segmentCount = path.segmentCount(); if (segmentCount > 0) { length += 7; // 7 chars are taken for " [...]" sb.append(" ["); //$NON-NLS-1$ // Add first n segments that fit int i = 0; while (i < segmentCount && length < MAX_TEXT_LENGTH) { String segment = path.segment(i); if (length + segment.length() < MAX_TEXT_LENGTH) { sb.append(segment); sb.append(IPath.SEPARATOR); length += segment.length() + 1; i++; } else if (i == 0) { // append at least part of the first segment sb.append(segment.substring(0, MAX_TEXT_LENGTH - length)); length = MAX_TEXT_LENGTH; break; } else { break; } } sb.append("..."); //$NON-NLS-1$ i = segmentCount - 1; // Add last n segments that fit while (i > 0 && length < MAX_TEXT_LENGTH) { String segment = path.segment(i); if (length + segment.length() < MAX_TEXT_LENGTH) { sb.append(IPath.SEPARATOR); sb.append(segment); length += segment.length() + 1; i--; } else { break; } } sb.append("]"); //$NON-NLS-1$ } } } return TextProcessor.process(sb.toString(), TextProcessor.getDefaultDelimiters() + "]");//$NON-NLS-1$ } | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/123c862651acfce2aefe5c0405159c5b5b35ac9e/ReopenEditorMenu.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/ReopenEditorMenu.java | [
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ze.setSize(bitstreams[k].getSize()); | ze.setTime(lmTime); ze.setSize(auth ? bitstreams[k].getSize() : 0); | public void disseminate(Context context, DSpaceObject dso, PackageParameters params, OutputStream pkg) throws PackageValidationException, CrosswalkException, AuthorizeException, SQLException, IOException { if (dso.getType() == Constants.ITEM) { Item item = (Item)dso; if (params != null && params.getProperty("manifestOnly") != null) { extraFiles = null; writeManifest(context, item, params, pkg); } else { extraFiles = new HashMap(); ZipOutputStream zip = new ZipOutputStream(pkg); zip.setComment("METS archive created by DSpace MetsDissemination"); // write manifest first. ZipEntry me = new ZipEntry(MANIFEST_FILE); zip.putNextEntry(me); writeManifest(context, item, params, zip); zip.closeEntry(); // copy extra (meta?) bitstreams into zip Iterator fi = extraFiles.keySet().iterator(); while (fi.hasNext()) { String fname = (String)fi.next(); ZipEntry ze = new ZipEntry(fname); zip.putNextEntry(ze); Utils.copy((InputStream)extraFiles.get(fname), zip); zip.closeEntry(); } // copy all non-meta bitstreams into zip Bundle bundles[] = item.getBundles(); for (int i = 0; i < bundles.length; i++) { if (!PackageUtils.isMetaInfoBundle(bundles[i])) { Bitstream[] bitstreams = bundles[i].getBitstreams(); for (int k = 0; k < bitstreams.length; k++) { if (AuthorizeManager.authorizeActionBoolean(context, bitstreams[k], Constants.READ)) { ZipEntry ze = new ZipEntry( makeBitstreamName(bitstreams[k])); ze.setSize(bitstreams[k].getSize()); zip.putNextEntry(ze); Utils.copy(bitstreams[k].retrieve(), zip); zip.closeEntry(); } } } } zip.close(); extraFiles = null; } } else throw new PackageValidationException("Can only disseminate an Item now."); } | 1868 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1868/748804adc26317566de95cc497aca1def22e5f87/AbstractMetsDissemination.java/buggy/dspace/src/org/dspace/content/packager/AbstractMetsDissemination.java | [
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final AboutInfo[] infoArray = getFeaturesInfo(); | final AboutInfo[] infoArray = getFeaturesWithImages(); | protected Control createDialogArea(Composite parent) { setHandCursor(new Cursor(parent.getDisplay(), SWT.CURSOR_HAND)); setBusyCursor(new Cursor(parent.getDisplay(), SWT.CURSOR_WAIT)); getShell().addDisposeListener(new DisposeListener() { public void widgetDisposed(DisposeEvent e) { if (getHandCursor() != null) getHandCursor().dispose(); if (getBusyCursor() != null) getBusyCursor().dispose(); } }); ImageDescriptor imageDescriptor = null; if (primaryInfo != null) { imageDescriptor = primaryInfo.getAboutImage(); // may be null } if (imageDescriptor != null) { image = imageDescriptor.createImage(); } if (image == null || image.getBounds().width <= MAX_IMAGE_WIDTH_FOR_TEXT) { // show text String aboutText = null; if (primaryInfo != null) { aboutText = primaryInfo.getAboutText(); // may be null } if (aboutText != null) { // get an about item setItem(scan(aboutText)); } } // page group Composite outer = (Composite) super.createDialogArea(parent); outer.setSize(outer.computeSize(SWT.DEFAULT, SWT.DEFAULT)); GridLayout layout = new GridLayout(); outer.setLayout(layout); outer.setLayoutData(new GridData(GridData.FILL_BOTH)); // the image & text Composite topContainer = new Composite(outer, SWT.NONE); layout = new GridLayout(); layout.numColumns = (image == null || getItem() == null ? 1 : 2); layout.marginWidth = 0; topContainer.setLayout(layout); GridData data = new GridData(); data.horizontalAlignment = GridData.FILL; data.grabExcessHorizontalSpace = true; topContainer.setLayoutData(data); //image on left side of dialog if (image != null) { Label imageLabel = new Label(topContainer, SWT.NONE); data = new GridData(); data.horizontalAlignment = GridData.FILL; data.verticalAlignment = GridData.BEGINNING; data.grabExcessHorizontalSpace = false; imageLabel.setLayoutData(data); imageLabel.setImage(image); } if (getItem() != null) { // text on the right text = new StyledText(topContainer, SWT.MULTI | SWT.READ_ONLY); text.setCaret(null); text.setFont(parent.getFont()); data = new GridData(); data.horizontalAlignment = GridData.FILL; data.verticalAlignment = GridData.BEGINNING; data.grabExcessHorizontalSpace = true; text.setText(getItem().getText()); text.setLayoutData(data); text.setCursor(null); text.setBackground(topContainer.getBackground()); setLinkRanges(text, getItem().getLinkRanges()); addListeners(text); } // horizontal bar Label bar = new Label(outer, SWT.HORIZONTAL | SWT.SEPARATOR); data = new GridData(); data.horizontalAlignment = GridData.FILL; bar.setLayoutData(data); // feature images Composite featureContainer = new Composite(outer, SWT.NONE); RowLayout rowLayout = new RowLayout(); rowLayout.wrap = true; featureContainer.setLayout(rowLayout); data = new GridData(); data.horizontalAlignment = GridData.FILL; featureContainer.setLayoutData(data); final AboutInfo[] infoArray = getFeaturesInfo(); for (int i = 0; i < infoArray.length; i++) { ImageDescriptor desc = infoArray[i].getFeatureImage(); Image image = null; if (desc != null) { Button button = new Button(featureContainer, SWT.FLAT | SWT.PUSH); button.setData(infoArray[i]); image = desc.createImage(); images.add(image); button.setImage(image); String name = infoArray[i].getProviderName(); if (name == null) name = ""; //$NON-NLS-1$ button.setToolTipText(name); button.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { AboutFeaturesDialog d = new AboutFeaturesDialog(getShell(), primaryInfo, featureInfos); d.setInitialSelection((AboutInfo) event.widget.getData()); d.open(); } }); } } // spacer bar = new Label(outer, SWT.NONE); data = new GridData(); data.horizontalAlignment = GridData.FILL; bar.setLayoutData(data); return outer; } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/5c11908886291f25042ef1f3737171d1d18c38c5/AboutDialog.java/buggy/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/internal/ide/dialogs/AboutDialog.java | [
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msg.setDest( null ); | msg.setDest(null); | private synchronized void handleRequestMessage( Message msg ) { if ( next_seq_id_to_assign < 0 ) { // we cannot assign a valid sequence id log.error( "Error: TOTAL_OLD.handleRequestMessage() - cannot handle request... do not know what sequence id to assign" ); return; } // make the message a broadcast message to the group msg.setDest( null ); // set the source of the message to be me msg.setSrc( local_addr ); // add the sequence id to the message msg.putHeader(getName(), new TotalHeader( TotalHeader.TOTAL_BCAST, next_seq_id_to_assign ) ); // store a copy of this message is the history Message msg_copy = msg.copy(); ack_history.addMessage( msg_copy, next_seq_id_to_assign ); // begin debug { Object header = msg_copy.getHeader(getName()); if ( !(header instanceof TotalHeader) ) { log.error( "Error: TOTAL_OLD.handleRequestMessage() - BAD: stored message that did not contain a TotalHeader - " + next_seq_id_to_assign ); } } // // end debug // increment the next sequence id to use next_seq_id_to_assign++; // pass this new Message (wrapped in an Event) down the Protocol Stack passDown( new Event( Event.MSG, msg ) ); } | 48949 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48949/13de68466e3cf7fde6ee0bde0cee09a33e837e89/TOTAL_OLD.java/buggy/src/org/jgroups/protocols/TOTAL_OLD.java | [
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if (eah != null) eah.displayEditorList(); | if (eah != null) { eah.displayEditorList(); } | public void run() { if (workbenchWindow == null) { // action has been disposed return; } IWorkbenchPage page = workbenchWindow.getActivePage(); if (page != null) { WorkbenchPage wbp = (WorkbenchPage) page; EditorAreaHelper eah = wbp.getEditorPresentation(); if (eah != null) eah.displayEditorList(); } } | 55805 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55805/fa4a8cff0e027f8d3c6b1fcb92b30f46767dd191/WorkbookEditorsAction.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/WorkbookEditorsAction.java | [
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public CSourceViewerConfiguration(CTextTools tools, CEditor editor) { super(CUIPlugin.getDefault().getCombinedPreferenceStore()); fTextTools= tools; fEditor= editor; | public CSourceViewerConfiguration(IColorManager colorManager, IPreferenceStore preferenceStore, ITextEditor editor, String partitioning) { super(preferenceStore); fColorManager= colorManager; fTextEditor= editor; fDocumentPartitioning= partitioning; initializeScanners(); | public CSourceViewerConfiguration(CTextTools tools, CEditor editor) { super(CUIPlugin.getDefault().getCombinedPreferenceStore()); fTextTools= tools; fEditor= editor; } | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/0482b3954404fd528d629e737114a70d018a10db/CSourceViewerConfiguration.java/buggy/core/org.eclipse.cdt.ui/src/org/eclipse/cdt/internal/ui/text/CSourceViewerConfiguration.java | [
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int nWeight = (int)getWeight(); if (nWeight <= WEIGHT_LIGHT) { return WEIGHT_LIGHT; } else if (nWeight <= WEIGHT_MEDIUM) { return WEIGHT_MEDIUM; } else if (nWeight <= WEIGHT_HEAVY) { return WEIGHT_HEAVY; } else { return WEIGHT_ASSAULT; } | return EntityWeightClass.getWeightClass((int)getWeight()); | public int getWeightClass() { int nWeight = (int)getWeight(); if (nWeight <= WEIGHT_LIGHT) { return WEIGHT_LIGHT; } else if (nWeight <= WEIGHT_MEDIUM) { return WEIGHT_MEDIUM; } else if (nWeight <= WEIGHT_HEAVY) { return WEIGHT_HEAVY; } else { return WEIGHT_ASSAULT; } } | 3464 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3464/067e0cc45c0757e4164da5a8a2e295c624f8339b/Entity.java/buggy/megamek/src/megamek/common/Entity.java | [
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"Mismatched lengths!", expectedCommand.length, actualCommand.length); | "Mismatched lengths!", expectedCommand.length, actualCommand.length); | public void testHistoryCommandNullLocal() throws CruiseControlException { Date lastBuildTime = new Date(); CVS element = new CVS(); element.setCvsRoot("cvsroot"); element.setLocalWorkingCopy(null); String[] expectedCommand = new String[] { "cvs", "-d", "cvsroot", "-q", "log", "-d>" + CVS.formatCVSDate(lastBuildTime), "-b" }; String[] actualCommand = element.buildHistoryCommand(lastBuildTime).getCommandline(); assertEquals( "Mismatched lengths!", expectedCommand.length, actualCommand.length); for (int i = 0; i < expectedCommand.length; i++) { assertEquals(expectedCommand[i], actualCommand[i]); } } | 55334 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55334/cc8d12515d217c4869991501dda487dca6f6add8/CVSTest.java/clean/main/test/net/sourceforge/cruisecontrol/sourcecontrols/CVSTest.java | [
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DateTime dt1 = new DateTime(2005, 7, 17, 1, 1, 1, 1); | DateTime dt1 = null; | public void testConstructor_RI_RI4() throws Throwable { DateTime dt1 = new DateTime(2005, 7, 17, 1, 1, 1, 1); DateTime dt2 = null; // 2002-06-09T01:00+01:00 MillisDuration test = new MillisDuration(dt1, dt2); assertEquals(PeriodType.getPreciseAllType(), test.getPeriodType()); assertEquals(-3, test.getYears()); assertEquals(-1, test.getMonths()); assertEquals(-1, test.getWeeks()); assertEquals(-2, test.getDays()); // one more due to 2004 leap year and fixed 365 day years assertEquals(0, test.getHours()); assertEquals(-1, test.getMinutes()); assertEquals(-1, test.getSeconds()); assertEquals(-1, test.getMillis()); assertEquals(true, test.isPrecise()); assertEquals(TEST_TIME_NOW - dt1.getMillis(), test.getTotalMillis()); } | 52681 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52681/3f62b3a3ef59f954a14f09aeee97053618da1c74/TestDuration_Constructors.java/clean/JodaTime/src/test/org/joda/time/TestDuration_Constructors.java | [
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if(ASS)ER.T(null!=_controlTyrant,"emperor init order problem", this); | if(AS.S)ER.T(null!=_controlTyrant,"emperor init order problem", this); | public BreakpointTyrant(Emperor emperor) { super(); _emperor = emperor; _controlTyrant = emperor.getControlTyrant(); if(ASS)ER.T(null!=_controlTyrant,"emperor init order problem", this); PrivilegeManager.enablePrivilege("Debugger"); _dc = _emperor.getDebugController(); // set script hook _scriptHook = new BPTyrantScriptHook(this); _scriptHook.setNextHook(_dc.setScriptHook(_scriptHook)); _breakpoints = new Hashtable(); _scripts = new Vector(); _controlTyrant.addObserver(this); if(ASS) { _uiThreadForAssertCheck = Thread.currentThread(); } _enabled = true; // process the scripts currently known by the controller _dc.iterateScripts(_scriptHook); } | 51996 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51996/2de73cf99dce60cce549e7757f841284b68d1220/BreakpointTyrant.java/buggy/js/jsdj/classes/com/netscape/jsdebugging/ifcui/BreakpointTyrant.java | [
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public InputStream getInputStream(Project project) throws BuildException, IOException, XmlException { String newLoc = location; if (newLoc.startsWith("jar:")) { JarFile jarFile; newLoc = newLoc.substring("jar:".length()); if (newLoc.startsWith("jar:")) { String name = newLoc.substring("jar:".length(), newLoc.indexOf("!/")); jarFile = new JarFile(project.resolveFile(name)); name = newLoc.substring(newLoc.indexOf("!/") + 2); jarFile = new NestedJarFile(jarFile, name); } else { jarFile = new JarFile(project.resolveFile(newLoc)); } ZipEntry ejbJarEntry = jarFile.getEntry(OPENEJB_JAR); if (null == ejbJarEntry) { throw new BuildException(OPENEJB_JAR + " not found"); } return jarFile.getInputStream(ejbJarEntry); } else if (newLoc.startsWith("nested:")) { JarFile jarFile = null; newLoc = newLoc.substring("nested:".length()); InputStream in = null; if (newLoc.startsWith("jar:")) { String name = newLoc.substring("jar:".length(), newLoc.indexOf("!/")); jarFile = new JarFile(project.resolveFile(name)); ZipEntry entry = jarFile.getEntry(GERONIMO_APP); if (null == entry) { throw new BuildException(GERONIMO_APP + " not found"); } in = jarFile.getInputStream(entry); } else { String name = newLoc.substring(0, newLoc.indexOf("!/")); in = new FileInputStream(project.resolveFile(name)); } XmlObject xmlObject = SchemaConversionUtils.parse(in); int index = Integer.parseInt(newLoc.substring(newLoc.indexOf("!/") + 2)); int found = 0; XmlCursor cursor = xmlObject.newCursor(); try { while (cursor.hasNextToken()) { if (cursor.isStart()) { String localName = cursor.getName().getLocalPart(); if (localName.equals("openejb-jar")) { if (found == index) { if (false == cursor.toParent()) { throw new AssertionError("No parent found."); } return cursor.getObject().newInputStream(); } found++; } } cursor.toNextToken(); } } finally { cursor.dispose(); } throw new BuildException("Only " + found + " openejb-jar DD are nested."); } return new FileInputStream(project.resolveFile(newLoc)); } | 47052 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47052/5272947f39db9303eaf4475305e50776bf8e540d/OpenejbJarLocation.java/buggy/openejb2/modules/openejb-builder/src/java/org/openejb/deployment/ant/OpenejbJarLocation.java | [
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else if (type == Long.TYPE) { | else if (valtype == Long.TYPE) { | public void set(Object obj, Object value) throws IllegalArgumentException, IllegalAccessException { if (type == Boolean.TYPE) { setBoolean0(obj, ((Boolean)value).booleanValue()); } else if (type == Byte.TYPE) { setByte0(obj, ((Byte)value).byteValue()); } else if (type == Short.TYPE) { setShort0(obj, ((Short)value).shortValue()); } else if (type == Character.TYPE) { setChar0(obj, ((Character)value).charValue()); } else if (type == Integer.TYPE) { setInt0(obj, ((Integer)value).intValue()); } else if (type == Long.TYPE) { setLong0(obj, ((Long)value).longValue()); } else if (type == Float.TYPE) { setFloat0(obj, ((Float)value).floatValue()); } else if (type == Double.TYPE) { setDouble0(obj, ((Double)value).doubleValue()); } else { setObject0(obj, value); }} | 45713 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45713/7b84a6330dc1427a0f11753f53c35dd58b462168/Field.java/clean/libraries/javalib/java/lang/reflect/Field.java | [
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final Attributes mainAttrs = manifest.getMainAttributes(); result = mainAttrs.getValue("Class-Path"); | if (manifest != null) { final Attributes mainAttrs = manifest.getMainAttributes(); result = mainAttrs.getValue("Class-Path"); } | private static String getClassPath(final File jarFile) { String result = null; if (jarFile.isFile()) { try { final JarFile jar = new JarFile(jarFile); final Manifest manifest = jar.getManifest(); final Attributes mainAttrs = manifest.getMainAttributes(); result = mainAttrs.getValue("Class-Path"); } catch (IOException ioExc) { System.err.println("Unable to access Jar file: " + jarFile + ", exc = " + ioExc); } } else { System.err.println("Missing Jar file: " + jarFile); } return result; } | 7352 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7352/56e0c512ba7875bc9165142ff5affd317fb8a06b/Project.java/clean/findbugs/src/java/edu/umd/cs/findbugs/Project.java | [
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mojo.setArtifactItems(list); | mojo.setArtifactItems( list ); | public void testMissingVersionFromDependencyMgt() throws MojoExecutionException { ArtifactItem item = new ArtifactItem(); item.setArtifactId( "artifactId" ); item.setClassifier( "" ); item.setGroupId( "groupId" ); item.setType( "type" ); MavenProject project = mojo.getProject(); project.setDependencies( getDependencyList( item ) ); item = new ArtifactItem(); item.setArtifactId( "artifactId-2" ); item.setClassifier( "" ); item.setGroupId( "groupId" ); item.setType( "type" ); ArrayList list = new ArrayList(); list.add( item ); mojo.setArtifactItems(list); project.getDependencyManagement().setDependencies( getDependencyMgtList( item ) ); mojo.execute(); this.assertFileExists( item, true ); assertEquals( "3.0-SNAPSHOT", item.getVersion() ); } | 51807 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51807/1f209e4fef3efb2350634ef8c679a5acd5c29ec3/TestCopyMojo.java/clean/maven-dependency-plugin/src/test/java/org/apache/maven/plugin/dependency/fromConfiguration/TestCopyMojo.java | [
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addTest(new TreeTest("testAddHundred", BasicPerformanceTest.GLOBAL)); addTest(new TreeTest("testAddThousandPreSort", BasicPerformanceTest.LOCAL)); | addTest(new TreeTest("testAddHundred", BasicPerformanceTest.LOCAL)); addTest(new TreeTest("testAddThousandPreSort", BasicPerformanceTest.GLOBAL)); | public JFacePerformanceSuite() { super(); addTest(new ListViewerRefreshTest("testRefresh")); addTest(new ComboViewerRefreshTest("testRefresh",BasicPerformanceTest.LOCAL)); addTest(new TableViewerRefreshTest("testRefresh")); addTest(new TableViewerRefreshTest("testUpdate")); addTest(new TreeTest("testAddTen")); addTest(new TreeTest("testAddFifty")); addTest(new TreeTest("testAddThousand")); addTest(new TreeTest("testAddHundred", BasicPerformanceTest.GLOBAL)); addTest(new TreeTest("testAddThousandPreSort", BasicPerformanceTest.LOCAL)); } | 55805 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55805/9e747ced58e16f96a84930b6104b53f056089cf0/JFacePerformanceSuite.java/buggy/tests/org.eclipse.ui.tests/Eclipse JFace Tests/org/eclipse/jface/tests/performance/JFacePerformanceSuite.java | [
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return runtime.getFalse(); | return getRuntime().getFalse(); | public IRubyObject equal(IRubyObject other) { if (this == other) { return runtime.getTrue(); } else if (!(other instanceof RubyHash)) { return runtime.getFalse(); } else if (length() != ((RubyHash)other).length()) { return runtime.getFalse(); } for (Iterator iter = modifiableEntryIterator(); iter.hasNext();) { checkRehashing(); Map.Entry entry = (Map.Entry) iter.next(); Object value = ((RubyHash)other).valueMap.get(entry.getKey()); if (value == null || !entry.getValue().equals(value)) { return runtime.getFalse(); } } return runtime.getTrue(); } | 1060 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1060/870e1da9b41bfdbae259e1fc5f18fc8b76686998/RubyHash.java/buggy/src/org/jruby/RubyHash.java | [
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setNull(parameterIndex, Types.OTHER); | setNull(parameterIndex, Types.VARBINARY); | public void setBytes(int parameterIndex, byte x[]) throws SQLException { if (connection.haveMinimumCompatibleVersion("7.2")) { //Version 7.2 supports the bytea datatype for byte arrays if (null == x) { setNull(parameterIndex, Types.OTHER); } else { setString(parameterIndex, PGbytea.toPGString(x), PG_TEXT); } } else { //Version 7.1 and earlier support done as LargeObjects LargeObjectManager lom = connection.getLargeObjectAPI(); int oid = lom.create(); LargeObject lob = lom.open(oid); lob.write(x); lob.close(); setInt(parameterIndex, oid); } } | 46409 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46409/cfae07331ccad4f28ea00dc7e8f1ba01ec979ec5/AbstractJdbc1Statement.java/clean/src/interfaces/jdbc/org/postgresql/jdbc1/AbstractJdbc1Statement.java | [
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public org.quickfix.field.AccruedInterestAmt getAccruedInterestAmt() throws FieldNotFound { org.quickfix.field.AccruedInterestAmt value = new org.quickfix.field.AccruedInterestAmt(); | public quickfix.field.AccruedInterestAmt getAccruedInterestAmt() throws FieldNotFound { quickfix.field.AccruedInterestAmt value = new quickfix.field.AccruedInterestAmt(); | public org.quickfix.field.AccruedInterestAmt getAccruedInterestAmt() throws FieldNotFound { org.quickfix.field.AccruedInterestAmt value = new org.quickfix.field.AccruedInterestAmt(); getField(value); return value; } | 8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/TradeCaptureReport.java/buggy/src/java/src/quickfix/fix44/TradeCaptureReport.java | [
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public org.quickfix.field.ContractMultiplier getContractMultiplier() throws FieldNotFound { org.quickfix.field.ContractMultiplier value = new org.quickfix.field.ContractMultiplier(); | public quickfix.field.ContractMultiplier getContractMultiplier() throws FieldNotFound { quickfix.field.ContractMultiplier value = new quickfix.field.ContractMultiplier(); | public org.quickfix.field.ContractMultiplier getContractMultiplier() throws FieldNotFound { org.quickfix.field.ContractMultiplier value = new org.quickfix.field.ContractMultiplier(); getField(value); return value; } | 5926 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5926/fecc27f98261270772ff182a1d4dfd94b5daa73d/RequestForPositions.java/buggy/src/java/src/quickfix/fix44/RequestForPositions.java | [
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if (u==0) { if (v>=0) return 90; else return -90; } else if (u>0) { return Math.atan(v/u)*180/Math.PI; } else if (v>=0) { return 180 + Math.atan(v/u)*180/Math.PI; } else { return Math.atan(v/u)*180/Math.PI-180; | if (u==0) { if (v>=0) return 90; else return -90; } if (u>0) return Math.atan(v/u)*180/Math.PI; if (v>=0) return 180 + Math.atan(v/u)*180/Math.PI; return Math.atan(v/u)*180/Math.PI-180; | private double atan2(double v, double u) { if (u==0) { if (v>=0) return 90; else return -90; } else if (u>0) { return Math.atan(v/u)*180/Math.PI; } else if (v>=0) { return 180 + Math.atan(v/u)*180/Math.PI; } else { return Math.atan(v/u)*180/Math.PI-180; } } | 7659 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7659/23e8c9696fabf00623b3f7cb5a915d458eabb308/Leaf.java/clean/arbaro/tree/Leaf.java | [
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setProperty((String) evalAttr("property", getProperty(), | setProperty((String) evalAttr("property", getPropertyExpr(), | private void evaluateExpressions() throws JspException { try { setAccesskey((String) evalAttr("accessKey", getAccesskey(), String.class)); } catch (NullAttributeException ex) { setAccesskey(null); } try { setAlt((String) evalAttr("alt", getAlt(), String.class)); } catch (NullAttributeException ex) { setAlt(null); } try { setAltKey((String) evalAttr("altKey", getAltKey(), String.class)); } catch (NullAttributeException ex) { setAltKey(null); } try { setDisabled(((Boolean) evalAttr("disabled", getDisabledExpr(), Boolean.class)). booleanValue()); } catch (NullAttributeException ex) { setDisabled(false); } try { setName((String) evalAttr("name", getName(), String.class)); } catch (NullAttributeException ex) { setName(null); } try { setOnblur((String) evalAttr("onblur", getOnblur(), String.class)); } catch (NullAttributeException ex) { setOnblur(null); } try { setOnchange((String) evalAttr("onchange", getOnchange(), String.class)); } catch (NullAttributeException ex) { setOnchange(null); } try { setOnclick((String) evalAttr("onclick", getOnclick(), String.class)); } catch (NullAttributeException ex) { setOnclick(null); } try { setOndblclick((String) evalAttr("ondblclick", getOndblclick(), String.class)); } catch (NullAttributeException ex) { setOndblclick(null); } try { setOnfocus((String) evalAttr("onfocus", getOnfocus(), String.class)); } catch (NullAttributeException ex) { setOnfocus(null); } try { setOnkeydown((String) evalAttr("onkeydown", getOnkeydown(), String.class)); } catch (NullAttributeException ex) { setOnkeydown(null); } try { setOnkeypress((String) evalAttr("onkeypress", getOnkeypress(), String.class)); } catch (NullAttributeException ex) { setOnkeypress(null); } try { setOnkeyup((String) evalAttr("onkeyup", getOnkeyup(), String.class)); } catch (NullAttributeException ex) { setOnkeyup(null); } try { setOnmousedown((String) evalAttr("onmousedown", getOnmousedown(), String.class)); } catch (NullAttributeException ex) { setOnmousedown(null); } try { setOnmousemove((String) evalAttr("onmousemove", getOnmousemove(), String.class)); } catch (NullAttributeException ex) { setOnmousemove(null); } try { setOnmouseout((String) evalAttr("onmouseout", getOnmouseout(), String.class)); } catch (NullAttributeException ex) { setOnmouseout(null); } try { setOnmouseover((String) evalAttr("onmouseover", getOnmouseover(), String.class)); } catch (NullAttributeException ex) { setOnmouseover(null); } try { setOnmouseup((String) evalAttr("onmouseup", getOnmouseup(), String.class)); } catch (NullAttributeException ex) { setOnmouseup(null); } try { setProperty((String) evalAttr("property", getProperty(), String.class)); } catch (NullAttributeException ex) { setProperty(null); } try { setStyle((String) evalAttr("style", getStyle(), String.class)); } catch (NullAttributeException ex) { setStyle(null); } try { setStyleClass((String) evalAttr("styleClass", getStyleClass(), String.class)); } catch (NullAttributeException ex) { setStyleClass(null); } try { setStyleId((String) evalAttr("styleId", getStyleId(), String.class)); } catch (NullAttributeException ex) { setStyleId(null); } try { setTabindex((String) evalAttr("tabindex", getTabindex(), String.class)); } catch (NullAttributeException ex) { setTabindex(null); } try { setTitle((String) evalAttr("title", getTitle(), String.class)); } catch (NullAttributeException ex) { setTitle(null); } try { setTitleKey((String) evalAttr("titleKey", getTitleKey(), String.class)); } catch (NullAttributeException ex) { setTitleKey(null); } try { setValue((String) evalAttr("value", getValue(), String.class)); } catch (NullAttributeException ex) { setValue(null); } } | 8610 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8610/2dbb705eab3659c5c2ceb6398f2eec56e1f6994d/ELMultiboxTag.java/buggy/struts-el/src/share/org/apache/strutsel/taglib/html/ELMultiboxTag.java | [
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data.widthHint = convertWidthInCharsToPixels(ABOUT_TEXT_WIDTH); data.heightHint = convertHeightInCharsToPixels(ABOUT_TEXT_HEIGHT); | protected Control createDialogArea(Composite parent) { setHandCursor(new Cursor(parent.getDisplay(), SWT.CURSOR_HAND)); setBusyCursor(new Cursor(parent.getDisplay(), SWT.CURSOR_WAIT)); getShell().addDisposeListener(new DisposeListener() { public void widgetDisposed(DisposeEvent e) { if (getHandCursor() != null) getHandCursor().dispose(); if (getBusyCursor() != null) getBusyCursor().dispose(); } }); ImageDescriptor imageDescriptor = aboutInfo.getAboutImage(); // may be null if (imageDescriptor != null) image = imageDescriptor.createImage(); if (image == null || image.getBounds().width <= MAX_IMAGE_WIDTH_FOR_TEXT) { // show text String aboutText = aboutInfo.getAboutText(); if (aboutText != null) { // get an about item setItem(scan(aboutText)); } } // page group Composite outer = (Composite)super.createDialogArea(parent); outer.setSize(outer.computeSize(SWT.DEFAULT, SWT.DEFAULT)); GridLayout layout = new GridLayout(); outer.setLayout(layout); outer.setLayoutData(new GridData(GridData.FILL_BOTH)); // the image & text Composite topContainer = new Composite(outer, SWT.NONE); layout = new GridLayout(); layout.numColumns = (image == null || getItem() == null ? 1 : 2); layout.marginWidth = 0; topContainer.setLayout(layout); GridData data = new GridData(); data.horizontalAlignment = GridData.FILL; data.grabExcessHorizontalSpace = true; topContainer.setLayoutData(data); //image on left side of dialog if (image != null) { Label imageLabel = new Label(topContainer, SWT.NONE); data = new GridData(); data.horizontalAlignment = GridData.FILL; data.verticalAlignment = GridData.BEGINNING; data.grabExcessHorizontalSpace = false; imageLabel.setLayoutData(data); imageLabel.setImage(image); } if (getItem() != null) { // text on the right text = new StyledText(topContainer, SWT.MULTI | SWT.READ_ONLY); text.setCaret(null); text.setFont(parent.getFont()); data = new GridData(); data.horizontalAlignment = GridData.FILL; data.verticalAlignment = GridData.BEGINNING; data.grabExcessHorizontalSpace = true; data.widthHint = convertWidthInCharsToPixels(ABOUT_TEXT_WIDTH); data.heightHint = convertHeightInCharsToPixels(ABOUT_TEXT_HEIGHT); text.setText(getItem().getText()); text.setLayoutData(data); text.setCursor(null); text.setBackground(topContainer.getBackground()); setLinkRanges(text, getItem().getLinkRanges()); addListeners(text); } // horizontal bar Label bar = new Label(outer, SWT.HORIZONTAL | SWT.SEPARATOR); data = new GridData(); data.horizontalAlignment = GridData.FILL; bar.setLayoutData(data); // feature images Composite featureContainer = new Composite(outer, SWT.NONE); RowLayout rowLayout = new RowLayout(); rowLayout.wrap = true; featureContainer.setLayout(rowLayout); data = new GridData(); data.horizontalAlignment = GridData.FILL; featureContainer.setLayoutData(data); Workbench workbench = (Workbench)PlatformUI.getWorkbench(); final AboutInfo[] infoArray = getFeaturesInfo(); for (int i = 0; i < infoArray.length; i++) { ImageDescriptor desc = infoArray[i].getFeatureImage(); Image image = null; if (desc != null) { Button button = new Button(featureContainer, SWT.FLAT | SWT.PUSH); button.setData(infoArray[i]); image = desc.createImage(); images.add(image); button.setImage(image); String name = infoArray[i].getProviderName(); if (name == null) name = ""; button.setToolTipText(name); button.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { AboutFeaturesDialog d = new AboutFeaturesDialog(getShell()); d.setInitialSelection((AboutInfo)event.widget.getData()); d.open(); } }); } } // spacer bar = new Label(outer, SWT.NONE); data = new GridData(); data.horizontalAlignment = GridData.FILL; bar.setLayoutData(data); return outer;} | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/7a4cd13b7c8a4f25f12bce9d5af219c2c3ed1660/AboutDialog.java/clean/bundles/org.eclipse.ui/Eclipse UI/org/eclipse/ui/internal/dialogs/AboutDialog.java | [
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return (getUuid() + getName() + getIndex()).compareTo(right.getUuid() + right.getName() + right.getIndex()); | return (getChildrenIndex() + getUuid() + getName() + getSameNameIndex()).compareTo(right.getChildrenIndex() + right.getUuid() + right.getName() + right.getSameNameIndex()); | public int compareTo(Object obj) { if (equals(obj)) { return 0; } ORMChildNodeEntry right = (ORMChildNodeEntry) obj; return (getUuid() + getName() + getIndex()).compareTo(right.getUuid() + right.getName() + right.getIndex()); } | 49304 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49304/ce0917f3bbf7b653a22e99486aa09e43ae268056/ORMChildNodeEntry.java/buggy/contrib/orm-persistence/src/java/org/apache/jackrabbit/core/state/orm/ORMChildNodeEntry.java | [
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eltQName.uri, | eltQName.uri, | int traverseChoice (Element choiceDecl) throws Exception { // REVISIT: traverseChoice, traverseSequence can be combined Element child = checkContent(choiceDecl, XUtil.getFirstChildElement(choiceDecl), true); int contentSpecType = 0; int csnType = 0; csnType = XMLContentSpec.CONTENTSPECNODE_CHOICE; contentSpecType = XMLElementDecl.TYPE_CHILDREN; int left = -2; int right = -2; boolean hadContent = false; for (; child != null; child = XUtil.getNextSiblingElement(child)) { int index = -2; hadContent = true; boolean seeParticle = false; String childName = child.getLocalName(); if (childName.equals(SchemaSymbols.ELT_ELEMENT)) { QName eltQName = traverseElementDecl(child); index = fSchemaGrammar.addContentSpecNode( XMLContentSpec.CONTENTSPECNODE_LEAF, eltQName.localpart, eltQName.uri, false); seeParticle = true; } else if (childName.equals(SchemaSymbols.ELT_GROUP)) { index = traverseGroupDecl(child); if (index == -1) continue; seeParticle = true; } else if (childName.equals(SchemaSymbols.ELT_CHOICE)) { index = traverseChoice(child); seeParticle = true; } else if (childName.equals(SchemaSymbols.ELT_SEQUENCE)) { index = traverseSequence(child); seeParticle = true; } else if (childName.equals(SchemaSymbols.ELT_ANY)) { index = traverseAny(child); seeParticle = true; } else { reportSchemaError(SchemaMessageProvider.GroupContentRestricted, new Object [] { "group", childName }); } if (seeParticle) { index = expandContentModel( index, child); } if (left == -2) { left = index; } else if (right == -2) { right = index; } else { left = fSchemaGrammar.addContentSpecNode(csnType, left, right, false); right = index; } } if (hadContent && right != -2) left = fSchemaGrammar.addContentSpecNode(csnType, left, right, false); return left; } | 1831 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1831/87731f2b2070ba79da173a5e6be82410b096d7c5/TraverseSchema.java/buggy/src/org/apache/xerces/validators/schema/TraverseSchema.java | [
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x = r.x; y = r.y; width = r.width; height = r.height; | setBounds (r.x, r.y, r.width, r.height); | public void setBounds(Rectangle r) { x = r.x; y = r.y; width = r.width; height = r.height; } | 13625 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13625/3fe1c14284ce32b79d0e66441aec6a45a77ff684/Rectangle.java/buggy/libjava/java/awt/Rectangle.java | [
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IProjectAdapter projectAdapter = (IProjectAdapter) project .getAdapter(IProjectAdapter.class); IPBDotProjectOwner pbDotProjectOwner = projectAdapter .getPBDotProjectOwner(resource); | IProjectAdapter projectAdapter = (IProjectAdapter) project.getAdapter(IProjectAdapter.class); IPBDotProjectOwner pbDotProjectOwner = projectAdapter.getPBDotProjectOwner(resource); | private IPBDotProjectOwner getIPBDotProjectOwner(IResource resource) { IProject project = resource.getProject(); IProjectAdapter projectAdapter = (IProjectAdapter) project .getAdapter(IProjectAdapter.class); IPBDotProjectOwner pbDotProjectOwner = projectAdapter .getPBDotProjectOwner(resource); return pbDotProjectOwner; } | 2575 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2575/5644f6506a8f17f2b8311774090206457f13a78d/PBDotProjectBuilder.java/clean/wolips/plugins/org.objectstyle.wolips.builder/java/org/objectstyle/wolips/builder/internal/PBDotProjectBuilder.java | [
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String key = sb.toString().trim(); int value = in.readInt(); if (!key.trim().equals("") && key.trim().length() > 3 && key.trim().indexOf("?") == -1) { metadata.put(key, new Integer(value)); } } | metadata.put("Extra data", sb.toString().trim()); | protected void initStandardMetadata() throws FormatException { super.initStandardMetadata(); try { // Now that the base TIFF standard metadata has been parsed, we need to // parse out the STK metadata from the UIC4TAG. TiffIFDEntry uic4tagEntry = TiffTools.getFirstIFDEntry(in, UIC4TAG); in.seek(uic4tagEntry.getValueOffset()); int planes = uic4tagEntry.getValueCount(); parseTags(planes); // no idea how this tag is organized - this is just a guess long[] uic1 = TiffTools.getIFDLongArray(ifds[0], METAMORPH_ID, true); try { for (int i=1; i<uic1.length; i+=2) { if (uic1[i] >= in.length() / 2) { in.seek(uic1[i] + 12); while (in.getFilePointer() < in.length()) { // read a null-terminated string (key), followed by an int value StringBuffer sb = new StringBuffer(); char c = (char) in.read(); while (c != 0 || sb.length() < 128) { sb = sb.append(c); c = (char) in.read(); } String key = sb.toString().trim(); int value = in.readInt(); if (!key.trim().equals("") && key.trim().length() > 3 && key.trim().indexOf("?") == -1) { metadata.put(key, new Integer(value)); } } } } } catch (Exception e) { } // copy ifds into a new array of Hashtables that will accomodate the // additional image planes long[] uic2 = TiffTools.getIFDLongArray(ifds[0], UIC2TAG, true); numImages = uic2.length; long[] uic3 = TiffTools.getIFDLongArray(ifds[0], UIC3TAG, true); for (int i=0; i<uic3.length; i++) { in.seek(uic3[i]); put("Wavelength [" + i + "]", in.readLong() / in.readLong()); } Hashtable[] tempIFDs = new Hashtable[numImages]; long[] oldOffsets = TiffTools.getIFDLongArray(ifds[0], TiffTools.STRIP_OFFSETS, true); long[] stripByteCounts = TiffTools.getIFDLongArray(ifds[0], TiffTools.STRIP_BYTE_COUNTS, true); int stripsPerImage = oldOffsets.length; int check = TiffTools.getIFDIntValue(ifds[0], TiffTools.PHOTOMETRIC_INTERPRETATION); if (check == TiffTools.RGB_PALETTE) { TiffTools.putIFDValue(ifds[0], TiffTools.PHOTOMETRIC_INTERPRETATION, TiffTools.BLACK_IS_ZERO); } emWavelength = TiffTools.getIFDLongArray(ifds[0], UIC3TAG, true); // for each image plane, construct an IFD hashtable int pointer = 0; Hashtable temp; for(int i=0; i<numImages; i++) { temp = new Hashtable(); // copy most of the data from 1st IFD temp.put(new Integer(TiffTools.LITTLE_ENDIAN), ifds[0].get( new Integer(TiffTools.LITTLE_ENDIAN))); temp.put(new Integer(TiffTools.IMAGE_WIDTH), ifds[0].get( new Integer(TiffTools.IMAGE_WIDTH))); temp.put(new Integer(TiffTools.IMAGE_LENGTH), ifds[0].get(new Integer(TiffTools.IMAGE_LENGTH))); temp.put(new Integer(TiffTools.BITS_PER_SAMPLE), ifds[0].get( new Integer(TiffTools.BITS_PER_SAMPLE))); temp.put(new Integer(TiffTools.COMPRESSION), ifds[0].get( new Integer(TiffTools.COMPRESSION))); temp.put(new Integer(TiffTools.PHOTOMETRIC_INTERPRETATION), ifds[0].get(new Integer(TiffTools.PHOTOMETRIC_INTERPRETATION))); temp.put(new Integer(TiffTools.STRIP_BYTE_COUNTS), ifds[0].get( new Integer(TiffTools.STRIP_BYTE_COUNTS))); temp.put(new Integer(TiffTools.ROWS_PER_STRIP), ifds[0].get( new Integer(TiffTools.ROWS_PER_STRIP))); temp.put(new Integer(TiffTools.X_RESOLUTION), ifds[0].get( new Integer(TiffTools.X_RESOLUTION))); temp.put(new Integer(TiffTools.Y_RESOLUTION), ifds[0].get( new Integer(TiffTools.Y_RESOLUTION))); temp.put(new Integer(TiffTools.RESOLUTION_UNIT), ifds[0].get( new Integer(TiffTools.RESOLUTION_UNIT))); temp.put(new Integer(TiffTools.PREDICTOR), ifds[0].get( new Integer(TiffTools.PREDICTOR))); // now we need a StripOffsets entry long planeOffset = i*(oldOffsets[stripsPerImage - 1] + stripByteCounts[stripsPerImage - 1] - oldOffsets[0]); long[] newOffsets = new long[oldOffsets.length]; newOffsets[0] = planeOffset + oldOffsets[0]; for(int j=1; j<newOffsets.length; j++) { newOffsets[j] = newOffsets[j-1] + stripByteCounts[0]; } temp.put(new Integer(TiffTools.STRIP_OFFSETS), newOffsets); tempIFDs[pointer] = temp; pointer++; } ifds = tempIFDs; } catch (NullPointerException n) { n.printStackTrace(); } catch (IOException io) { io.printStackTrace(); } catch (FormatException e) { e.printStackTrace(); } try { super.initStandardMetadata(); } catch (Throwable t) { t.printStackTrace(); } // parse (mangle) TIFF comment String descr = (String) metadata.get("Comment"); if (descr != null) { StringTokenizer st = new StringTokenizer(descr, "\n"); StringBuffer sb = new StringBuffer(); boolean first = true; while (st.hasMoreTokens()) { String line = st.nextToken(); int colon = line.indexOf(": "); if (colon < 0) { // normal line (not a key/value pair) if (line.trim().length() > 0) { // not a blank line sb.append(line); if (!line.endsWith(".")) sb.append("."); sb.append(" "); } first = false; continue; } if (first) { // first line could be mangled; make a reasonable guess int dot = line.lastIndexOf(".", colon); if (dot >= 0) { String s = line.substring(0, dot + 1); sb.append(s); if (!s.endsWith(".")) sb.append("."); sb.append(" "); } line = line.substring(dot + 1); colon -= dot + 1; first = false; } // add key/value pair embedded in comment as separate metadata String key = line.substring(0, colon); String value = line.substring(colon + 2); put(key, value); } // replace comment with trimmed version descr = sb.toString().trim(); if (descr.equals("")) metadata.remove("Comment"); else put("Comment", descr); } try { sizeZ[0] = TiffTools.getIFDLongArray(ifds[0], UIC2TAG, true).length; sizeT[0] = getImageCount(currentId) / sizeZ[0]; 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while (! alreadyRead(newMessages[lastRead], f)) { | while (lastRead >=0 && ! alreadyRead(newMessages[lastRead], f)) { | public Message[] getNewMessages(Folder f) throws MessagingException { if (Pooka.isDebug()) System.out.println("getting new messages."); Message[] newMessages = f.getMessages(); if (newMessages.length > 0) { int lastRead = newMessages.length - 1; while (! alreadyRead(newMessages[lastRead], f)) { lastRead--; } if (Pooka.isDebug()) System.out.println("final lastRead is " + lastRead + "; for reference, newMessages.length = " + newMessages.length); if (newMessages.length - lastRead < 2) { // no new messages if (Pooka.isDebug()) System.out.println("no new messages."); return new Message[0]; } else { if (Pooka.isDebug()) System.out.println("returning " + (newMessages.length - lastRead - 1) + " new messages."); Message[] returnValue = new Message[newMessages.length - lastRead - 1]; System.arraycopy(newMessages, lastRead + 1, returnValue, 0, newMessages.length - lastRead - 1); return returnValue; } } else { if (Pooka.isDebug()) System.out.println("no messages in folder."); // no messages. return newMessages; } } | 967 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/967/d10a3fdd9905852f1c352d50c83635d4005e83f1/PopInboxFolderInfo.java/clean/net/suberic/pooka/PopInboxFolderInfo.java | [
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config = null; config = new MuleConfiguration(); instance = null; | public synchronized void dispose() { if (disposed.get()) { return; } try { if (started.get()) { stop(); } } catch (UMOException e) { logger.error("Failed to stop manager: " + e.getMessage(), e); } disposed.set(true); disposeConnectors(); if (model != null) { model.dispose(); } disposeAgents(); transformers.clear(); endpoints.clear(); endpointIdentifiers.clear(); containerContext.dispose(); containerContext = null; // props.clear(); fireSystemEvent(new ManagerEvent(this, ManagerEvent.MANAGER_DISPOSED)); transformers = null; endpoints = null; endpointIdentifiers = null; // props = null; initialised.set(false); if (eventManager != null) { eventManager.dispose(); } if (workManager != null) { workManager.dispose(); } config = null; config = new MuleConfiguration(); instance = null; if(!config.isEmbedded()) { if (logger.isInfoEnabled()) { logger.info(getEndSplash()); } else { System.out.println(getEndSplash()); } } } | 28323 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/28323/52017c1e601c5799605acbc0ccb383996a153288/MuleManager.java/clean/mule/src/java/org/mule/MuleManager.java | [
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m_statusTable = new HashMap(); | public void init() { } | 11849 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11849/ee925e8a9e5362a082e45c6bfbc995a731465000/PassiveStatusKeeper.java/clean/src/services/org/opennms/netmgt/passive/PassiveStatusKeeper.java | [
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throw new RuntimeException(t); } | throw new RuntimeException(t); } | public void run() { throw new RuntimeException(t); } | 12633 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12633/f81cc1b11b3a883dbd75a30387d76b77b5babfa6/ExceptionDisplayDialog.java/buggy/dupratcated/src/fr/umlv/symphonie/util/ExceptionDisplayDialog.java | [
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StringBuffer errorMessage = null; | qe.connection = (AbstractJdbc1Connection)((AbstractJdbc1Statement)statement).getPGConnection(); qe.pg_stream = qe.connection.getPGStream(); | public java.sql.ResultSet execute() throws SQLException { StringBuffer errorMessage = null; if (pg_stream == null) { throw new PSQLException("postgresql.con.closed"); } synchronized (pg_stream) { sendQuery(); int c; boolean l_endQuery = false; while (!l_endQuery) { c = pg_stream.ReceiveChar(); switch (c) { case 'A': // Asynchronous Notify int pid = pg_stream.ReceiveInteger(4); String msg = pg_stream.ReceiveString(connection.getEncoding()); connection.addNotification(new org.postgresql.core.Notification(msg, pid)); break; case 'B': // Binary Data Transfer receiveTuple(true); break; case 'C': // Command Status receiveCommandStatus(); break; case 'D': // Text Data Transfer receiveTuple(false); break; case 'E': // Error Message // it's possible to get more than one error message for a query // see libpq comments wrt backend closing a connection // so, append messages to a string buffer and keep processing // check at the bottom to see if we need to throw an exception if ( errorMessage == null ) errorMessage = new StringBuffer(); errorMessage.append(pg_stream.ReceiveString(connection.getEncoding())); // keep processing break; case 'I': // Empty Query int t = pg_stream.ReceiveChar(); break; case 'N': // Error Notification connection.addWarning(pg_stream.ReceiveString(connection.getEncoding())); break; case 'P': // Portal Name String pname = pg_stream.ReceiveString(connection.getEncoding()); break; case 'T': // MetaData Field Description receiveFields(); break; case 'Z': l_endQuery = true; break; default: throw new PSQLException("postgresql.con.type", new Character((char) c)); } } // did we get an error during this query? if ( errorMessage != null ) throw new SQLException( errorMessage.toString() ); return connection.getResultSet(statement, fields, tuples, status, update_count, insert_oid, binaryCursor); } } | 52522 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52522/16a30346c86590fbdcd83cacd2a0a9dbd2cd00dc/QueryExecutor.java/clean/src/interfaces/jdbc/org/postgresql/core/QueryExecutor.java | [
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RubyArray array = RubyArray.newArray(runtime, args.length - expectedArgsCount); | RubyArray array = runtime.newArray(args.length - expectedArgsCount); | private void prepareArguments(Ruby runtime, IRubyObject receiver, IRubyObject[] args) { if (args == null) { args = IRubyObject.NULL_ARRAY; } int expectedArgsCount = argsNode.getArgsCount(); if (expectedArgsCount > args.length) { throw new ArgumentError(runtime, "Wrong # of arguments(" + args.length + " for " + expectedArgsCount + ")"); } if (argsNode.getRestArg() == -1 && argsNode.getOptArgs() != null) { int opt = expectedArgsCount + argsNode.getOptArgs().size(); if (opt < args.length) { throw new ArgumentError(runtime, "wrong # of arguments(" + args.length + " for " + opt + ")"); } runtime.getCurrentFrame().setArgs(args); } if (runtime.getScope().hasLocalVariables()) { if (expectedArgsCount > 0) { for (int i = 0; i < expectedArgsCount; i++) { runtime.getScope().setValue(i + 2, args[i]); } } if (argsNode.getOptArgs() != null) { ListNode optArgs = argsNode.getOptArgs(); Iterator iter = optArgs.iterator(); for (int i = expectedArgsCount; i < args.length && iter.hasNext(); i++) { new AssignmentVisitor(runtime, receiver).assign((Node)iter.next(), args[i], true); expectedArgsCount++; } // assign the default values. while (iter.hasNext()) { EvaluateVisitor.createVisitor(receiver).eval((Node)iter.next()); } } if (argsNode.getRestArg() >= 0) { RubyArray array = RubyArray.newArray(runtime, args.length - expectedArgsCount); for (int i = expectedArgsCount; i < args.length; i++) { array.append(args[i]); } runtime.getScope().setValue(argsNode.getRestArg(), array); } } } | 46258 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46258/870e1da9b41bfdbae259e1fc5f18fc8b76686998/DefaultMethod.java/buggy/src/org/jruby/internal/runtime/methods/DefaultMethod.java | [
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int status = rs.status; | int status = rs.getStatus(); | public void run() { long uid = req.getLong(DMT.UID); short htl = req.getShort(DMT.HTL); NodePeer source = (NodePeer) req.getSource(); htl = source.decrementHTL(htl); // FIXME should be more generic when implement SSKs NodeCHK key = (NodeCHK) req.getObject(DMT.FREENET_ROUTING_KEY); Message accepted = DMT.createFNPAccepted(uid); source.send(accepted); Object o = node.makeRequestSender(key, htl, uid, source); if(o instanceof CHKBlock) { CHKBlock block = (CHKBlock) o; PartiallyReceivedBlock prb = new PartiallyReceivedBlock(Node.PACKETS_IN_BLOCK, Node.PACKET_SIZE, block.getData()); BlockTransmitter bt = new BlockTransmitter(node.usm, source, uid, prb); bt.send(); return; } RequestSender rs = (RequestSender) o; if(rs == null) { // ran out of htl? Message dnf = DMT.createFNPDataNotFound(uid); source.send(dnf); return; } boolean shouldHaveStartedTransfer = false; while(true) { rs.waitUntilStatusChange(); if(rs.transferStarted()) { PartiallyReceivedBlock prb = rs.getPRB(); BlockTransmitter bt = new BlockTransmitter(node.usm, source, uid, prb); bt.send(); // either fails or succeeds; other side will see, we don't care return; } int status = rs.status; switch(status) { case RequestSender.NOT_FINISHED: continue; case RequestSender.DATA_NOT_FOUND: Message dnf = DMT.createFNPDataNotFound(uid); source.sendAsync(dnf); return; case RequestSender.REJECTED_OVERLOAD: // Propagate back to source who needs to reduce send rate Message reject = DMT.createFNPRejectOverload(uid); source.sendAsync(reject); return; case RequestSender.ROUTE_NOT_FOUND: // Tell source Message rnf = DMT.createFNPRouteNotFound(uid, rs.htl); source.sendAsync(rnf); return; case RequestSender.SUCCESS: case RequestSender.TRANSFER_FAILED: case RequestSender.VERIFY_FAILURE: if(shouldHaveStartedTransfer) throw new IllegalStateException("Got status code "+status+" but transfer not started"); shouldHaveStartedTransfer = true; continue; // should have started transfer default: throw new IllegalStateException("Unknown status code "+status); } } } | 50915 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50915/d6f2b27b0068d0738bbd2f1afae8c1cc0bef24f4/RequestHandler.java/buggy/src/freenet/node/RequestHandler.java | [
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optIterator = new VM_OptGCMapIterator(registerLocations); | if (VM.BuildForOptCompiler) { optIterator = new VM_OptGCMapIterator(registerLocations); } else { optIterator = null; } | public VM_GCMapIteratorGroup() { registerLocations = WordArray.create(VM_Constants.NUM_GPRS); baselineIterator = new VM_BaselineGCMapIterator(registerLocations); //-#if RVM_WITH_OPT_COMPILER optIterator = new VM_OptGCMapIterator(registerLocations); //-#endif jniIterator = new VM_JNIGCMapIterator(registerLocations); hardwareTrapIterator = new VM_HardwareTrapGCMapIterator(registerLocations); } | 49871 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49871/3244bbe4a4a879b815f1721d3b48595e84349cc5/VM_GCMapIteratorGroup.java/buggy/rvm/src/com/ibm/jikesrvm/memorymanagers/mminterface/VM_GCMapIteratorGroup.java | [
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printError("Cannot get initial context for JNDI: " + e+"<br>"); return ; | printError("Cannot get initial context for JNDI: " + e + "<br>"); return; | public void doPost(HttpServletRequest request, HttpServletResponse response) throws IOException, ServletException { Integer toId; // to user id Integer fromId; // from user id Integer itemId; // item id String comment; // user comment Integer rating; // user rating sp = new ServletPrinter(response, "StoreComment"); /* Get and check all parameters */ String value = request.getParameter("to"); if ((value == null) || (value.equals(""))) { printError("<h3>You must provide a 'to user' identifier !<br></h3>"); return ; } else toId = new Integer(value); value = request.getParameter("from"); if ((value == null) || (value.equals(""))) { printError("<h3>You must provide a 'from user' identifier !<br></h3>"); return ; } else fromId = new Integer(value); value = request.getParameter("itemId"); if ((value == null) || (value.equals(""))) { printError("<h3>You must provide an item identifier !<br></h3>"); return ; } else itemId = new Integer(value); value = request.getParameter("rating"); if ((value == null) || (value.equals(""))) { printError("<h3>You must provide a rating !<br></h3>"); return ; } else rating = new Integer(value); comment = request.getParameter("comment"); if ((comment == null) || (comment.equals(""))) { printError("<h3>You must provide a comment !<br></h3>"); return ; } try { initialContext = new InitialContext(); } catch (Exception e) { printError("Cannot get initial context for JNDI: " + e+"<br>"); return ; } // Try to find the user corresponding to the 'to' ID User to; try { UserHome uHome = (UserHome)PortableRemoteObject.narrow(initialContext.lookup("UserHome"), UserHome.class); to = uHome.findByPrimaryKey(new UserPK(toId)); } catch (Exception e) { printError("Cannot lookup User or Item: " +e+"<br>"); return ; } CommentHome cHome; try { cHome = (CommentHome)PortableRemoteObject.narrow(initialContext.lookup("CommentHome"), CommentHome.class); } catch (Exception e) { printError("Cannot lookup Comment: " +e+"<br>"); return ; } // We want to start transactions from client UserTransaction utx = null; try { utx = (javax.transaction.UserTransaction)initialContext.lookup(Config.UserTransaction); utx.begin(); } catch (Exception e) { printError("Cannot lookup UserTransaction: "+e+"<br>"); return ; } try { Comment c = cHome.create(fromId, toId, itemId, rating.intValue(), comment); to.updateRating(rating.intValue()); utx.commit(); sp.printHTMLheader("RUBiS: Comment posting"); sp.printHTML("<center><h2>Your comment has been successfully posted.</h2></center>\n"); } catch (Exception e) { printError("Error while storing the comment (got exception: " +e+")<br>"); try { utx.rollback(); } catch (Exception se) { printError("Transaction rollback failed: " + e +"<br>"); } return ; } sp.printHTMLfooter(); } | 5750 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5750/3d57ae5a342bc10d6c418636c07193a0289ffd6b/StoreComment.java/clean/EJB_EntityBean_id_BMP/edu/rice/rubis/beans/servlets/StoreComment.java | [
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SchemaGrammar grammar = (SchemaGrammar) fGrammarResolver.getGrammar(uri); | SchemaGrammar grammar = (SchemaGrammar) fGrammarResolver.getGrammar(uri); | private void resolveSchemaGrammar( String loc, String uri) throws Exception { SchemaGrammar grammar = (SchemaGrammar) fGrammarResolver.getGrammar(uri); if (grammar == null) { DOMParser parser = new DOMParser(); parser.setEntityResolver( new Resolver(fEntityHandler) ); parser.setErrorHandler( new ErrorHandler() ); try { parser.setFeature("http://xml.org/sax/features/validation", false); parser.setFeature("http://xml.org/sax/features/namespaces", true); parser.setFeature("http://apache.org/xml/features/dom/defer-node-expansion", false); } catch ( org.xml.sax.SAXNotRecognizedException e ) { e.printStackTrace(); } catch ( org.xml.sax.SAXNotSupportedException e ) { e.printStackTrace(); } // expand it before passing it to the parser InputSource source = null; EntityResolver currentER = parser.getEntityResolver(); if (currentER != null) { source = currentER.resolveEntity("", loc); } if (source == null) { loc = fEntityHandler.expandSystemId(loc); source = new InputSource(loc); } try { parser.parse( source ); } catch ( IOException e ) { e.printStackTrace(); } catch ( SAXException e ) { //System.out.println("loc = "+loc); //e.printStackTrace(); reportRecoverableXMLError( XMLMessages.MSG_GENERIC_SCHEMA_ERROR, XMLMessages.SCHEMA_GENERIC_ERROR, e.getMessage() ); } Document document = parser.getDocument(); //Our Grammar TraverseSchema tst = null; try { if (DEBUG_SCHEMA_VALIDATION) { System.out.println("I am geting the Schema Document"); } Element root = document.getDocumentElement();// This is what we pass to TraverserSchema if (root == null) { reportRecoverableXMLError(XMLMessages.MSG_GENERIC_SCHEMA_ERROR, XMLMessages.SCHEMA_GENERIC_ERROR, "Can't get back Schema document's root element :" + loc); } else { if (uri == null || !uri.equals(root.getAttribute(SchemaSymbols.ATT_TARGETNAMESPACE)) ) { reportRecoverableXMLError(XMLMessages.MSG_GENERIC_SCHEMA_ERROR, XMLMessages.SCHEMA_GENERIC_ERROR, "Schema in " + loc + " has a different target namespace " + "from the one specified in the instance document :" + uri); } grammar = new SchemaGrammar(); grammar.setGrammarDocument(document); tst = new TraverseSchema( root, fStringPool, (SchemaGrammar)grammar, fGrammarResolver, fErrorReporter, source.getSystemId()); fGrammarResolver.putGrammar(document.getDocumentElement().getAttribute("targetNamespace"), grammar); } } catch (Exception e) { e.printStackTrace(System.err); } } } | 46079 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46079/f2b9ad84920b2015a53c9a67b4dfb5460fa0465e/XMLValidator.java/clean/src/org/apache/xerces/validators/common/XMLValidator.java | [
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public int countItems() throws SQLException { /** item count in a collection */ int collitems = 0; /** item count in a community */ int commitems = 0; | public int countItems() throws SQLException { int total = 0; | public int countItems() throws SQLException { /** item count in a collection */ int collitems = 0; /** item count in a community */ int commitems = 0; Collection[] cols = getCollections(); if ( cols.length > 0 ) { for (int j = 0; j < cols.length; j++) { // Get total items of a collection collitems = cols[j].countItems(); commitems += collitems; } } return commitems; } | 25205 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/25205/e86896fffd711ca9e37236cf17968e3a812783fa/Community.java/clean/dspace/src/org/dspace/content/Community.java | [
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public void setComment() | public void setComment(String text) | public void setComment() { m_isTag = true; setTypeChar('!'); m_isComment = true; m_isClose = false; m_isEmpty = false; } | 8797 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8797/92f9fdc0d111e35d8624dd89523537f2f059c86c/XMLBlock.java/buggy/XMLBlock.java | [
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in.skipBytes(4); | in.readInt(); | protected void initFile(String id) throws FormatException, IOException { super.initFile(id); in = new RandomAccessStream(id); byte[] fourBytes = new byte[4]; in.read(fourBytes); littleEndian = new String(fourBytes).equals("iiii"); // populate standard metadata hashtable and OME root node in.skipBytes(12); dataSize = (int) DataTools.read4UnsignedBytes(in, littleEndian); dataSize -= 28; // size of raw image data, in bytes width = (int) DataTools.read4UnsignedBytes(in, littleEndian); height = (int) DataTools.read4UnsignedBytes(in, littleEndian); c = (int) DataTools.read4UnsignedBytes(in, littleEndian); long zDepth = DataTools.read4UnsignedBytes(in, littleEndian); long tDepth = DataTools.read4UnsignedBytes(in, littleEndian); pixelType = (int) DataTools.read4UnsignedBytes(in, littleEndian); numImages = (int) (zDepth * tDepth); metadata.put("Width", new Long(width)); metadata.put("Height", new Long(height)); metadata.put("Channels", new Long(c)); metadata.put("ZDepth", new Long(zDepth)); metadata.put("TDepth", new Long(tDepth)); String ptype; bps = 1; switch ((int) pixelType) { case 0: ptype = "8 bit unsigned"; bps = 1; break; case 1: ptype = "16 bit signed short"; bps = 2; break; case 2: ptype = "16 bit unsigned short"; bps = 2; break; case 3: ptype = "32 bit signed long"; bps = 4; break; case 4: ptype = "32 bit single-precision float"; bps = 4; break; case 5: ptype = "Color24"; bps = 1; break; case 6: ptype = "Color48"; bps = 2; break; case 10: ptype = "64 bit double-precision float"; bps = 8; break; default: ptype = "reserved"; // for values 7-9 } metadata.put("PixelType", ptype); in.skipBytes((int) dataSize); String typeAsString; switch ((int) pixelType) { case 0: typeAsString = "Uint8"; break; case 1: typeAsString = "int16"; break; case 2: typeAsString = "Uint16"; break; case 3: typeAsString = "Uint32"; break; case 4: typeAsString = "float"; break; case 5: typeAsString = "Uint32"; break; case 6: typeAsString = "Uint32"; break; case 10: typeAsString = "float"; break; default: typeAsString = "Uint8"; } order = "XY"; if (c > 1) order += "CZT"; else order += "ZTC"; // The metadata store we're working with. MetadataStore store = getMetadataStore(); store.setPixels( new Integer((int) width), // SizeX new Integer((int) height), // SizeY new Integer((int) zDepth), // SizeZ new Integer((int) c), // SizeC new Integer((int) tDepth), // SizeT typeAsString, // PixelType new Boolean(!littleEndian), // BigEndian order, // DimensionOrder null); // Use index 0 in.read(fourBytes); String tag = new String(fourBytes); while (!tag.equals("fini")) { if (tag.equals("clut")) { // read in Color Lookup Table long size = DataTools.read4UnsignedBytes(in, littleEndian); if (size == 8) { // indexed lookup table in.skipBytes(4); long type=DataTools.read4UnsignedBytes(in, littleEndian); String clutType; switch ((int) type) { case 0: clutType = "monochrome"; break; case 1: clutType = "reverse monochrome"; break; case 2: clutType = "BGR"; break; case 3: clutType = "classify"; break; case 4: clutType = "rainbow"; break; case 5: clutType = "red"; break; case 6: clutType = "green"; break; case 7: clutType = "blue"; break; case 8: clutType = "cyan"; break; case 9: clutType = "magenta"; break; case 10: clutType = "yellow"; break; case 11: clutType = "saturated pixels"; break; } } else { // explicitly defined lookup table // length is 772 in.skipBytes(4); byte[] colorTable = new byte[256*3]; in.read(colorTable); } } else if (tag.equals("norm")) { // read in normalization information long size = DataTools.read4UnsignedBytes(in, littleEndian); // error checking if (size != (44 * c)) { throw new FormatException("Bad normalization settings"); } for (int i=0; i<c; i++) { long source = DataTools.read4UnsignedBytes(in, littleEndian); String sourceType; switch ((int) source) { case 0: sourceType = "user"; break; case 1: sourceType = "plane"; break; case 2: sourceType = "sequence"; break; case 3: sourceType = "saturated plane"; break; case 4: sourceType = "saturated sequence"; break; case 5: sourceType = "ROI"; break; default: sourceType = "user"; } metadata.put("NormalizationSource" + i, sourceType); double min=DataTools.read8SignedBytes(in, littleEndian); double max=DataTools.read8SignedBytes(in, littleEndian); double gamma=DataTools.read8SignedBytes(in, littleEndian); double black=DataTools.read8SignedBytes(in, littleEndian); double white=DataTools.read8SignedBytes(in, littleEndian); metadata.put("NormalizationMin" + i, new Double(min)); metadata.put("NormalizationMax" + i, new Double(max)); metadata.put("NormalizationGamma" + i, new Double(gamma)); metadata.put("NormalizationBlack" + i, new Double(black)); metadata.put("NormalizationWhite" + i, new Double(white)); } } else if (tag.equals("head")) { // read in header labels in.skipBytes(4); // size is defined to 2200 for (int i=0; i<100; i++) { int num = DataTools.read2UnsignedBytes(in, littleEndian); in.read(fourBytes); String name = new String(fourBytes); metadata.put("Header" + num, name); } } else if (tag.equals("roi ")) { // read in ROI information long size = DataTools.read4UnsignedBytes(in, littleEndian); long roiType = DataTools.read4UnsignedBytes(in, littleEndian); long roiLeft = DataTools.read4UnsignedBytes(in, littleEndian); long roiTop = DataTools.read4UnsignedBytes(in, littleEndian); long roiRight = DataTools.read4UnsignedBytes(in, littleEndian); long roiBottom = DataTools.read4UnsignedBytes(in, littleEndian); long numRoiPts = DataTools.read4UnsignedBytes(in, littleEndian); Integer x0 = new Integer((int) roiLeft); Integer x1 = new Integer((int) roiRight); Integer y0 = new Integer((int) roiBottom); Integer y1 = new Integer((int) roiTop); store.setDisplayROI( x0, y0, null, x1, y1, null, null, null, null, null); for (int i=0; i<numRoiPts; i++) { long ptX = DataTools.read4UnsignedBytes(in, littleEndian); long ptY = DataTools.read4UnsignedBytes(in, littleEndian); } } else if (tag.equals("mask")) { // read in Segmentation Mask } else if (tag.equals("unit")) { // read in units in.skipBytes(4); // size is 48 for (int i=0; i<4; i++) { long xResStyle = DataTools.read4UnsignedBytes(in, littleEndian); long unitsPerPixel = DataTools.read4UnsignedBytes(in, littleEndian); long xUnitName = DataTools.read4UnsignedBytes(in, littleEndian); metadata.put("ResolutionStyle" + i, new Long(xResStyle)); metadata.put("UnitsPerPixel" + i, new Long(unitsPerPixel)); if (i == 0) { Float pixelSize = new Float(unitsPerPixel); store.setDimensions(pixelSize, pixelSize, null, null, null, null); } metadata.put("UnitName" + i, new Long(xUnitName)); } } else if (tag.equals("view")) { // read in view in.skipBytes(4); } else if (tag.equals("plot")) { // read in plot // skipping this field for the moment in.skipBytes(4); // size is 2508 in.skipBytes(2508); } else if (tag.equals("notes")) { // read in notes (image info) in.skipBytes(4); // size is 576 byte[] temp = new byte[64]; in.read(temp); String descriptor = new String(temp); temp = new byte[512]; in.read(temp); String notes = new String(temp); metadata.put("Descriptor", descriptor); metadata.put("Notes", notes); store.setImage(id, null, notes, null); } int r = in.read(fourBytes); if (r > 0) { tag = new String(fourBytes); } else { // eof tag = "fini"; } } } | 46826 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46826/2df09d33bfdc966378aae0cc09cb503afb983bc2/IPLabReader.java/buggy/loci/formats/in/IPLabReader.java | [
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} else if(cmd.equals("Paste")) { | } else if (cmd.equals("Paste")) { | public void actionPerformed(ActionEvent e) { String cmd = e.getActionCommand(); if(cmd.equals("Cut")) { consoleTextArea.cut(); } else if(cmd.equals("Copy")) { consoleTextArea.copy(); } else if(cmd.equals("Paste")) { consoleTextArea.paste(); } } | 47609 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47609/b9766e81693411fa600b26b9a0763dcf621b2770/Main.java/clean/js/rhino/toolsrc/org/mozilla/javascript/tools/debugger/Main.java | [
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if (task != null && !browse.isDisposed() && deactiveTask.getHandle().equals(task.getHandle())) { | if (task != null && !browse.isDisposed() && deactiveTask.getHandleIdentifier().equals(task.getHandleIdentifier())) { | public void taskDeactivated(ITask deactiveTask) { if (task != null && !browse.isDisposed() && deactiveTask.getHandle().equals(task.getHandle())) { browse.setEnabled(true); } } | 51989 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51989/8bb2562e67033f820cbda60f5cf69d21ebe18834/TaskSummaryEditor.java/buggy/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/tasklist/ui/TaskSummaryEditor.java | [
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if ( callback != null ) callback.removeConnection( c ); | if ( callback != null ) callback.removeConnection( c ); | public void failedToConnect(Connection c) { // Remove this connection if ( callback != null ) callback.removeConnection( c ); // Maintain a count of attempted outgoing connections activeAttempts--; } | 5134 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5134/41422245404c0fad8a30437d75fc29381b02be42/ConnectionManager.java/clean/components/gnutella-core/src/main/java/com/limegroup/gnutella/ConnectionManager.java | [
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if (aAST.getType() == TokenTypes.CLASS_DEF) { | if (aAST.getType() == TokenTypes.CLASS_DEF || aAST.getType() == TokenTypes.ENUM_DEF) { | public final void leaveToken(DetailAST aAST) { if (aAST.getType() == TokenTypes.CLASS_DEF) { // perhaps it was inner class int dotIdx = mCurrentClass.lastIndexOf("$"); if (dotIdx == -1) { // perhaps just a class dotIdx = mCurrentClass.lastIndexOf("."); } if (dotIdx == -1) { // looks like a topmost class mCurrentClass = ""; } else { mCurrentClass = mCurrentClass.substring(0, dotIdx); } } } | 31427 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/31427/fcbd40f3ce04fe3011bf0e1b2642ac1fd049f5de/AbstractTypeAwareCheck.java/buggy/src/checkstyle/com/puppycrawl/tools/checkstyle/checks/AbstractTypeAwareCheck.java | [
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if (args == null) { args = new RubyPointer(); } CRefNode savedCref = null; | if (args == null) { args = new RubyPointer(); } CRefNode savedCref = null; | public RubyObject call(Ruby ruby, RubyObject recv, String id, RubyPointer args, boolean noSuper) { if (args == null) { args = new RubyPointer(); } CRefNode savedCref = null; // +++ = null; List valueList = null; ruby.getScope().push(); CRefNode lRefValue = getRefValue(); if (lRefValue != null) { savedCref = ruby.getCRef(); // s.a. ruby.setCRef(lRefValue); ruby.getRubyFrame().setCbase(lRefValue); } if (getTable() != null) { valueList = new ArrayList(Collections.nCopies(getTable().size(), ruby.getNil())); ruby.getScope().setLocalValues(valueList); ruby.getScope().setLocalNames(getTable()); } else { valueList = null; //ruby.getScope().getLocalValues(); ruby.getScope().setLocalValues(null); ruby.getScope().setLocalNames(null); } Node callBody = getNextNode(); Node callNode = null; if (callBody.getType() == Constants.NODE_ARGS) { callNode = callBody; callBody = null; } else if (callBody.getType() == Constants.NODE_BLOCK) { callNode = callBody.getHeadNode(); callBody = callBody.getNextNode(); } RubyVarmap.push(ruby); // PUSH_TAG(PROT_FUNC); try { if (callNode != null) { //if (call_node.getType() != Constants.NODE_ARGS) { // rb_bug("no argument-node"); //} int i = callNode.getCount(); if (i > (args != null ? args.size() : 0)) { int size = 0; if (args != null) size = args.size(); throw new RubyArgumentException(ruby, getFile() + ":" + getLine() +"wrong # of arguments(" + size + " for " + i + ")"); } if (callNode.getRest() == -1) { int opt = i; Node optNode = callNode.getOptNode(); while (optNode != null) { opt++; optNode = optNode.getNextNode(); } if (opt < (args != null ? args.size() : 0)) { throw new RubyArgumentException(ruby, "wrong # of arguments(" + args.size() + " for " + opt + ")"); } // +++ ruby.getRubyFrame().setArgs(valueList != null ? new DelegateList(valueList, 2, valueList.size()) : null); // --- } if (valueList != null) { if (i > 0) { for (int j = 0; j < i; j++) { valueList.set(j + 2, args.get(j)); } } args.inc(i); if (callNode.getOptNode() != null) { Node optNode = callNode.getOptNode(); while (optNode != null && args.size() != 0) { ((AssignableNode) optNode.getHeadNode()).assign(ruby, recv, args.getRuby(0), true); args.inc(1); optNode = optNode.getNextNode(); } recv.eval(optNode); } if (callNode.getRest() >= 0) { RubyArray array = null; if (args.size() > 0) { array = RubyArray.newArray(ruby, args); } else { array = RubyArray.newArray(ruby, 0); } valueList.set(callNode.getRest(), array); } } } return recv.eval(callBody); } catch (ReturnException rExcptn) { return rExcptn.getReturnValue(); } finally { RubyVarmap.pop(ruby); ruby.getScope().pop(); if (savedCref != null) { ruby.setCRef(savedCref); } } } | 45298 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45298/7798138390a306a202dcec9bde45928dae2e852e/ScopeNode.java/buggy/org/jruby/nodes/ScopeNode.java | [
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IEditorPart editor = UIUtil.getActiveEditor( true ); if ( editor != null ) { return ( editor.getEditorInput( ).getName( ).endsWith( ".rptlibrary" ) ); } return false; | return ( selectLibrary( ) || editLibrary( ) ); | private boolean isEnable( ) { IEditorPart editor = UIUtil.getActiveEditor( true ); if ( editor != null ) { return ( editor.getEditorInput( ).getName( ).endsWith( ".rptlibrary" ) ); //$NON-NLS-1$ } return false; } | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/fb6513c80373d4051a54d769ef954b2fdb7aebbd/PublishLibraryAction.java/clean/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/ui/actions/PublishLibraryAction.java | [
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return formattedString.charAt(charIndex); | return formattedString.charAt (charIndex); | public char setIndex(int position) { if (position < 0 || position > formattedString.length()) throw new IllegalArgumentException("position is out of range"); charIndex = position; if (attributes != null) { for (attributeIndex=0;attributeIndex<attributes.length; attributeIndex++) if (ranges[attributeIndex] > charIndex) break; attributeIndex--; } if (charIndex == formattedString.length()) return DONE; else return formattedString.charAt(charIndex); } | 25337 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/25337/905252cb2827a39c9de9ec6f60a2dd0fb655254d/FormatCharacterIterator.java/clean/libjava/java/text/FormatCharacterIterator.java | [
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triggereditor = new TriggerEditorComposite(cmpContent, SWT.NONE, triggers); GridData gdTriggerEditor = new GridData(GridData.FILL_HORIZONTAL); triggereditor.setLayoutData(gdTriggerEditor); | triggereditor = new TriggerEditorComposite( cmpContent, SWT.NONE, triggers, wizardContext, bEnableURLParameters, bEnableShowTooltipValue ); GridData gdTriggerEditor = new GridData( GridData.FILL_HORIZONTAL ); triggereditor.setLayoutData( gdTriggerEditor ); | private void placeComponents() { GridLayout glContent = new GridLayout(); glContent.marginHeight = 7; glContent.marginWidth = 7; glContent.verticalSpacing = 5; Composite cmpContent = new Composite(shell, SWT.NONE); cmpContent.setLayout(glContent); triggereditor = new TriggerEditorComposite(cmpContent, SWT.NONE, triggers); GridData gdTriggerEditor = new GridData(GridData.FILL_HORIZONTAL); triggereditor.setLayoutData(gdTriggerEditor); GridLayout glButtons = new GridLayout(); glButtons.numColumns = 2; glButtons.horizontalSpacing = 5; Composite cmpButtons = new Composite(cmpContent, SWT.NONE); GridData gdButtons = new GridData(GridData.FILL_HORIZONTAL); cmpButtons.setLayoutData(gdButtons); cmpButtons.setLayout(glButtons); btnAccept = new Button(cmpButtons, SWT.PUSH); GridData gdBTNAccept = new GridData(GridData.HORIZONTAL_ALIGN_END); gdBTNAccept.grabExcessHorizontalSpace = true; btnAccept.setLayoutData(gdBTNAccept); btnAccept.setText(Messages.getString("Shared.Lbl.OK")); //$NON-NLS-1$ btnAccept.addSelectionListener(this); btnCancel = new Button(cmpButtons, SWT.PUSH); GridData gdBTNCancel = new GridData(GridData.HORIZONTAL_ALIGN_END); gdBTNCancel.grabExcessHorizontalSpace = false; btnCancel.setLayoutData(gdBTNCancel); btnCancel.setText(Messages.getString("Shared.Lbl.Cancel")); //$NON-NLS-1$ btnCancel.addSelectionListener(this); } | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/a769c95667dd11c0218d8ea7d48a98220acf6dd8/TriggerEditorDialog.java/clean/chart/org.eclipse.birt.chart.ui.extension/src/org/eclipse/birt/chart/ui/swt/composites/TriggerEditorDialog.java | [
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public void testGetStereotypes() { Object cls = Model.getCoreFactory().buildClass(); Model.getCoreHelper().setNamespace(cls, Model.getModelManagementFactory().createPackage()); Collection coll1 = Model.getFacade().getStereotypes(cls); assertEquals(0, coll1.size()); Object stereotype = Model.getExtensionMechanismsFactory().buildStereotype( "TestStereotype", Model.getFacade().getNamespace(cls)); Model.getCoreHelper().addStereotype(cls, stereotype); Collection coll2 = Model.getFacade().getStereotypes(cls); assertEquals(1, coll2.size()); assertTrue(coll2.contains(stereotype)); } | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/340bff8632e5ecad8484aa211c71fdb3fb853238/TestModelFacade2.java/clean/tests/org/argouml/model/TestModelFacade2.java | [
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newname.append(suffix.name, suffix.labels); | newname.append(suffix.name, suffix.offset(0), suffix.labels); | concatenate(Name prefix, Name suffix) throws NameTooLongException { if (prefix.isAbsolute()) return (prefix); Name newname = new Name(); copy(prefix, newname); newname.append(suffix.name, suffix.labels); return newname;} | 4227 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4227/7e1e3e31d95a2c7c87eee6939a0d9e99b4864664/Name.java/clean/org/xbill/DNS/Name.java | [
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if (file.getName().equals(IProjectDescription.DESCRIPTION_FILE_NAME)) | if (file.getName().equals( IProjectDescription.DESCRIPTION_FILE_NAME)) | private void collectProjectFiles(Collection files, File directory) { File[] contents = directory.listFiles(); for (int i = 0; i < contents.length; i++) { File file = contents[i]; if (file.isDirectory()) collectProjectFiles(files, file); else { if (file.getName().equals(IProjectDescription.DESCRIPTION_FILE_NAME)) files.add(file); } } } | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/320f342281f01d0eab3a23189cdf15882a2124b5/WizardProjectsImportPage.java/buggy/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/internal/wizards/datatransfer/WizardProjectsImportPage.java | [
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toOmit.put(track, track); playList.add(track); } | toOmit.add(track); playList.add(track); | public synchronized Track chooseTrack() { int playListLength = trackDatabase.getPlayListLength(); int unratedPlayListRatio = trackDatabase.getUnratedPlayListRatio();//Added by EBD - 11.09.2003//Maybe use ceiling instead of round? int unratedPlayListCount = (int)Math.round(((double)playListLength) * (((double)unratedPlayListRatio) / 100.0)); // Remove the track we've just played if necessary. if (playListIndex < playList.size()) { Track track = (Track) playList.get(playListIndex); if (!track.isOnPlayList()) { playList.remove(playListIndex); // Subtract one from the index because it'll get incremented later. playListIndex--; } } // Remove extra unwanted items. while (playList.size() > playListLength) playList.remove(playList.size() - 1); // Maintain a 'toOmit' hash table, which is used to make the choosing // of tracks not choose ones we have already got on the list. Hashtable toOmit = new Hashtable(); int noOfUnrated = 0; for (int i = 0; i < playList.size(); i++) { Track track = (Track) playList.get(i); if (!track.isOnPlayList()) { if (track.getRating() == 0) { playList.remove(i); if (i < playListIndex) --playListIndex; } } else { toOmit.put(track, track); if (!track.isRated()) noOfUnrated++; } } // Loop around one time for each track which needs to be added to the // play list. Don't worry too much if we don't exactly that number of // tracks because it will likely get one next time around. for (int i = playListLength - playList.size(); i > 0; i--) { synchronized (trackDatabase) { Track track = null;/** * Modified by Eric Dalquist - 11.09.2003 * * Now multiple unrated tracks can be selected. */ if (noOfUnrated <= unratedPlayListCount && playList.size() != 0) track = trackDatabase.chooseUnratedTrack(random, toOmit); if (track == null) track = trackDatabase.chooseTrack(random, toOmit); if (track != null) { if (!track.isRated()) noOfUnrated++; toOmit.put(track, track); playList.add(track); } } } int size = playList.size(); if (size < 1) return null; if (playListIndex >= size) playListIndex = 0; // // Make sure the track you select isn't the same as the track // that was previously played // Track selectedTrack; if (size == 1) { selectedTrack = (Track) playList.get(0); } else { int currentIndex = playListIndex; do { if (++playListIndex >= size) playListIndex = 0; selectedTrack = (Track) playList.get(playListIndex); if (selectedTrack != lastPlayedTrack) break; } while (playListIndex != currentIndex); } lastPlayedTrack = selectedTrack; System.out.println("---Play list---"); for (int i = 0; i < playList.size(); i++) { Track track = (Track) playList.get(i); if (i == playListIndex) System.out.print("* "); System.out.println(track.toString()); } return selectedTrack; } | 11635 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11635/81ff79b34cf34b3c59d32a6d086c23c59ca830c5/PlayListManager.java/clean/trunk/irate/irate/client/PlayListManager.java | [
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response.setContentLength(length); | response.setContentLength(bytes.length); | public static void streamContentToBrowser(HttpServletResponse response, InputStream in, int length, String contentType) throws IOException { // tell the browser not the cache setResponseBrowserProxyNoCache(response); // set the response info response.setContentLength(length); if (contentType != null) { response.setContentType(contentType); } // stream the content OutputStream out = response.getOutputStream(); try { streamContent(out, in, length); } catch (IOException e) { out.close(); throw e; } // close the servlet output stream out.flush(); out.close(); } | 45953 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45953/137ab48677dd551defb2a479e3477daa90bea93e/UtilHttp.java/buggy/framework/base/src/base/org/ofbiz/base/util/UtilHttp.java | [
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public void removeRow(int row) { | public void removeRow(int row) { | public void removeRow(int row) { dataVector.remove(row); fireTableRowsDeleted(row,row); } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/eef19a6fbc70451186d53b7669077748b8b7c136/DefaultTableModel.java/clean/core/src/classpath/javax/javax/swing/table/DefaultTableModel.java | [
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this.autoCommit = autoCommit; | throw new UnsupportedOperationException(); | public void setAutoCommit (boolean autoCommit) { this.autoCommit = autoCommit; } | 24959 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/24959/6c301d16144a33fc9826448eb21601e47a876c47/AggregatedLayoutManager.java/buggy/source/org/jasig/portal/layout/alm/AggregatedLayoutManager.java | [
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final void pushOuterMethodStack(VirtualStack vstack) { vstack.pushAll(outerMethodStack); | final void pushOuterMethodStack(ItemFactory ifac, VirtualStack vstack) { vstack.pushAll(ifac, outerMethodStack); | final void pushOuterMethodStack(VirtualStack vstack) { vstack.pushAll(outerMethodStack); } | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/e304bedac9ab86f88bdb27ffd782a9777505c449/InlinedMethodInfo.java/buggy/core/src/core/org/jnode/vm/x86/compiler/l1a/InlinedMethodInfo.java | [
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if ((_uriType != Type.NodeSetDTM) && (_uriType != Type.String)) { | if ((_uriType != Type.NodeSet) && (_uriType != Type.String)) { | public Type typeCheck(SymbolTable stable) throws TypeCheckError { // At least one argument - two at most final int ac = argumentCount(); if ((ac < 1) || (ac > 2)) { ErrorMsg msg = new ErrorMsg("Illegal number of arguments "+ "to document() function"); throw new TypeCheckError(msg); } // Parse the first argument - the document URI _uri = argument(0); if (_uri instanceof LiteralExpr) { LiteralExpr expr = (LiteralExpr)_uri; if (expr.getValue().equals(Constants.EMPTYSTRING)) { Stylesheet stylesheet = getStylesheet(); if (stylesheet == null) { ErrorMsg msg = new ErrorMsg("Illegal argument "+ "to document() function"); throw new TypeCheckError(msg); } _uri = new LiteralExpr(stylesheet.getURL().toString(), Constants.EMPTYSTRING); } } _uriType = _uri.typeCheck(stable); if ((_uriType != Type.NodeSetDTM) && (_uriType != Type.String)) { _uri = new CastExpr(_uri, Type.String); } // Parse the second argument - the document URI base if (ac == 2) { _base = argument(1); if (!_base.typeCheck(stable).identicalTo(Type.NodeSetDTM)) { ErrorMsg msg = new ErrorMsg("Second argument to document() "+ "function must be a node-set."); throw new TypeCheckError(msg); } } return _type = Type.NodeSetDTM; } | 46591 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46591/f0eadbdddedfdd79ebf4f6c6de8e4fc82241e61f/DocumentCall.java/clean/src/org/apache/xalan/xsltc/compiler/DocumentCall.java | [
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String[] uses = exports[j].getUses(); | String[] uses = (String[]) exports[j].getExportPackageDescription().getDirective(Constants.USES_DIRECTIVE); | void addInitialGroupingConstraints(ResolverBundle[] bundles) { for (int i = 0; i < bundles.length; i++) { ResolverExport[] exports = bundles[i].getExportPackages(); for (int j = 0; j < exports.length; j++) { String[] uses = exports[j].getUses(); if (uses == null) continue; for (int k = 0; k < uses.length; k++) { ResolverExport exp = bundles[i].getExport(uses[k]); if (exp == null) continue; addConstraint(exports[j], exp); addTransitiveGroupingConstraints(exports[j], exp); } } } } | 2516 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2516/cba4c973afe037bfd2ac93a0c8877d76f9a85f0a/GroupingChecker.java/buggy/bundles/org.eclipse.osgi/resolver/src/org/eclipse/osgi/internal/module/GroupingChecker.java | [
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User newUser = userDatabase.createUser(newUserName); newUser.setPassword("pass1"); newUser.setFromAddress("fromAddress1"); newUser.setReplyToAddress("replyToAddress1"); User newUser2 = userDatabase.findUser(newUserName); assertTrue("Check username", newUserName.equals(newUser2.getUsername())); assertTrue("Check fromAddress", "fromAddress1".equals(newUser2.getFromAddress())); assertTrue("Check replyToAddress", "replyToAddress1".equals(newUser2.getReplyToAddress())); assertTrue("Check password", "pass1".equals(newUser2.getPassword())); assertNull("Check fullName", newUser2.getFullName()); generateUsers(3, subs, "08"); User newUser3 = userDatabase.findUser("08user1"); Subscription[] subscriptions = newUser3.getSubscriptions(); assertTrue ("Testing subscriptions length", subscriptions.length == subs); User newUser4 = userDatabase.findUser("08user1"); Subscription[] subscriptions2 = newUser4.getSubscriptions(); assertTrue ("Testing subscriptions length", subscriptions2.length == subs); | User newUser = userDatabase.createUser(newUserName); newUser.setPassword("pass1"); newUser.setFromAddress("fromAddress1"); newUser.setReplyToAddress("replyToAddress1"); User newUser2 = userDatabase.findUser(newUserName); assertTrue("Check username", newUserName.equals(newUser2.getUsername())); assertTrue("Check fromAddress", "fromAddress1".equals(newUser2.getFromAddress())); assertTrue("Check replyToAddress", "replyToAddress1".equals(newUser2.getReplyToAddress())); assertTrue("Check password", "pass1".equals(newUser2.getPassword())); assertNull("Check fullName", newUser2.getFullName()); generateUsers(3, subs, "08"); User newUser3 = userDatabase.findUser("08user1"); Subscription[] subscriptions = newUser3.getSubscriptions(); assertTrue ("Testing subscriptions length", subscriptions.length == subs); User newUser4 = userDatabase.findUser("08user1"); Subscription[] subscriptions2 = newUser4.getSubscriptions(); assertTrue ("Testing subscriptions length", subscriptions2.length == subs); | public void testCase08() throws Exception{ String newUserName = "newUser08"; int subs = 5; User newUser = userDatabase.createUser(newUserName); newUser.setPassword("pass1"); newUser.setFromAddress("fromAddress1"); newUser.setReplyToAddress("replyToAddress1"); // TODO fix me, this is not releasing the internal state on close // userDatabase.save(); // userDatabase.close(); // userDatabase.open(); User newUser2 = userDatabase.findUser(newUserName); assertTrue("Check username", newUserName.equals(newUser2.getUsername())); assertTrue("Check fromAddress", "fromAddress1".equals(newUser2.getFromAddress())); assertTrue("Check replyToAddress", "replyToAddress1".equals(newUser2.getReplyToAddress())); assertTrue("Check password", "pass1".equals(newUser2.getPassword())); assertNull("Check fullName", newUser2.getFullName()); generateUsers(3, subs, "08"); User newUser3 = userDatabase.findUser("08user1"); Subscription[] subscriptions = newUser3.getSubscriptions(); assertTrue ("Testing subscriptions length", subscriptions.length == subs); // userDatabase.save(); // userDatabase.close(); // userDatabase.open(); User newUser4 = userDatabase.findUser("08user1"); Subscription[] subscriptions2 = newUser4.getSubscriptions(); assertTrue ("Testing subscriptions length", subscriptions2.length == subs); } | 2722 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2722/1c9701ef0df49c47648fb6bcf65f7575186571d3/BaseTestUserDatabase.java/buggy/mailreader-dao/src/test/java/org/apache/struts/apps/mailreader/dao/BaseTestUserDatabase.java | [
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} else if ( end < exonEnd ) { overlap = end - start; | } else if ( enda < endb ) { overlap = enda - starta; | private static int computeOverlap( int start, int end, int exonStart, int exonEnd ) { if ( exonStart > exonEnd ) throw new IllegalArgumentException( "Exon start must be before end" ); if ( start > end ) throw new IllegalArgumentException( "Start must be before end" ); log.debug( "Comparing query length " + ( end - start ) + ", location: " + start + "-->" + end + " to exon length " + ( exonEnd - exonStart ) + ", location: " + exonStart + "--->" + exonEnd ); int overlap = 0; if ( exonEnd < start || end < exonStart ) { log.debug( "Exon doesn't overlap" ); overlap = 0; } else if ( start <= exonStart ) { if ( end < exonEnd ) { overlap = end - exonStart; // overhang on the left } else { overlap = exonEnd - exonStart; // includes entire exon } } else if ( end < exonEnd ) { // entirely contained within exon. overlap = end - start; // length of our test sequence. } else { overlap = exonEnd - start; // overhang on the right } assert overlap >= 0 : "Negative overlap"; assert ( double ) overlap / ( double ) ( end - start ) <= 1.0 : "Overlap longer than sequence"; log.debug( "Overlap=" + overlap ); return overlap; } | 4335 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4335/f95984592ab6cae0a89b2e6264c7a318aad6a040/SequenceManipulation.java/buggy/gemma-core/src/main/java/ubic/gemma/analysis/sequence/SequenceManipulation.java | [
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setToolTipText("Mark Complete"); setId(ID); setImageDescriptor(TaskListImages.TASK_COMPLETE); | setToolTipText("Mark Complete"); setId(ID); setImageDescriptor(TaskListImages.TASK_COMPLETE); | public MarkTaskCompleteAction(TaskListView view) { this.view = view; setText("Mark Complete"); setToolTipText("Mark Complete"); setId(ID); setImageDescriptor(TaskListImages.TASK_COMPLETE); } | 51151 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51151/1abdb20ca0cde925cfb80d10d584d2fd323bcfb0/MarkTaskCompleteAction.java/buggy/org.eclipse.mylyn.tasks.ui/src/org/eclipse/mylyn/tasklist/ui/actions/MarkTaskCompleteAction.java | [
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public void performDefaultAction(PipelineContext pipelineContext, XFormsEvent event) { final String eventName = event.getEventName(); if (XFormsEvents.XFORMS_SUBMIT.equals(eventName) || XFormsEvents.XXFORMS_SUBMIT.equals(eventName)) { // 11.1 The xforms-submit Event // Bubbles: Yes / Cancelable: Yes / Context Info: None containingDocument.setGotSubmission(true); boolean isDeferredSubmissionSecondPass = false; XFormsSubmitErrorEvent submitErrorEvent = null; boolean submitDone = false; final long submissionStartTime = XFormsServer.logger.isDebugEnabled() ? System.currentTimeMillis() : 0; try { // Make sure submission element info is extracted extractSubmissionElement(); final boolean isReplaceAll = replace.equals(XFormsConstants.XFORMS_SUBMIT_REPLACE_ALL); final boolean isReplaceInstance = replace.equals(XFormsConstants.XFORMS_SUBMIT_REPLACE_INSTANCE); final boolean isHandlingOptimizedGet = XFormsUtils.isOptimizeGetAllSubmission() && XFormsSubmissionUtils.isGet(method) && isReplaceAll; //noinspection UnnecessaryLocalVariable final boolean isDeferredSubmission = (isReplaceAll || isReplaceInstance && containingDocument.getXFormsControls().getCurrentControlsState().isHasUpload()) && !isHandlingOptimizedGet; final boolean isDeferredSubmissionFirstPass = isDeferredSubmission && XFormsEvents.XFORMS_SUBMIT.equals(eventName); isDeferredSubmissionSecondPass = isDeferredSubmission && !isDeferredSubmissionFirstPass; // here we get XXFORMS_SUBMIT final XFormsControls xformsControls = containingDocument.getXFormsControls(); // Get node to submit final Node currentNode; { // TODO FIXME: the submission element is not a control, so we shouldn't use XFormsControls. // "The default value is '/'." final String refAttribute = (submissionElement.attributeValue("ref") != null) ? submissionElement.attributeValue("ref") : "/"; xformsControls.resetBindingContext(); xformsControls.pushBinding(pipelineContext, refAttribute, null, null, model.getEffectiveId(), null, submissionElement, Dom4jUtils.getNamespaceContextNoDefault(submissionElement)); // Check that we have a current node and that it is pointing to a document or an element final NodeInfo currentNodeInfo = xformsControls.getCurrentSingleNode(); if (currentNodeInfo == null) throw new OXFException("Empty single-node binding on xforms:submission for submission id: " + id); if (!(currentNodeInfo instanceof DocumentInfo || currentNodeInfo.getNodeKind() == org.w3c.dom.Document.ELEMENT_NODE)) { throw new OXFException("xforms:submission: single-node binding must refer to a document node or an element."); } // For now, we can't submit a read-only instance (but we could in the future) if (!(currentNodeInfo instanceof NodeWrapper)) throw new OXFException("xforms:submission: submitting a read-only instance is not yet implemented."); currentNode = (Node) ((NodeWrapper) currentNodeInfo).getUnderlyingNode(); } // Evaluate AVTs // TODO FIXME: the submission element is not a control, so we shouldn't use XFormsControls. resolvedAction = XFormsUtils.resolveAttributeValueTemplates(pipelineContext, xformsControls.getCurrentSingleNode(), null, xformsControls.getFunctionLibrary(), submissionElement, avtAction); resolvedXXFormsUsername = XFormsUtils.resolveAttributeValueTemplates(pipelineContext, xformsControls.getCurrentSingleNode(), null, xformsControls.getFunctionLibrary(), submissionElement, avtXXFormsUsername); resolvedXXFormsPassword = XFormsUtils.resolveAttributeValueTemplates(pipelineContext, xformsControls.getCurrentSingleNode(), null, xformsControls.getFunctionLibrary(), submissionElement, avtXXFormsPassword); final XFormsInstance currentInstance = xformsControls.getCurrentInstance(); // TODO: Somewhere around here, check flags and doRecalculate() if needed final Document initialDocumentToSubmit; if (serialize && !isDeferredSubmissionSecondPass) { // Create document to submit final Document backupInstanceDocument = currentInstance.getInstanceDocument(); try { initialDocumentToSubmit = createDocumentToSubmit(currentNode, currentInstance); currentInstance.setInstanceDocument(initialDocumentToSubmit, false); // Revalidate instance model.doRevalidate(pipelineContext); // TODO: Check if the validation state can really change. If so, find a solution. // "no notification events are marked for dispatching due to this operation" // Check that there are no validation errors final boolean instanceSatisfiesValidRequired = isDocumentSatisfiesValidRequired(initialDocumentToSubmit); if (!instanceSatisfiesValidRequired) {// {// currentInstance.readOut();// } if (logger.isDebugEnabled()) { final LocationDocumentResult documentResult = new LocationDocumentResult(); final TransformerHandler identity = TransformerUtils.getIdentityTransformerHandler(); identity.setResult(documentResult); currentInstance.read(identity); final String documentString = Dom4jUtils.domToString(documentResult.getDocument()); logger.debug("XForms - instance document or subset thereof cannot be submitted:\n" + documentString); } throw new OXFException("xforms:submission: instance to submit does not satisfy valid and/or required model item properties."); } } finally { currentInstance.setInstanceDocument(backupInstanceDocument, false); } } else { initialDocumentToSubmit = null; } // Deferred submission: end of the first pass if (isDeferredSubmissionFirstPass) { // When replace="all", we wait for the submission of an XXFormsSubmissionEvent from the client containingDocument.setClientActiveSubmission(this); return; } final Document documentToSubmit; if (serialize && isDeferredSubmissionSecondPass) { // Handle uploaded files if any final Element filesElement = (event instanceof XXFormsSubmitEvent) ? ((XXFormsSubmitEvent) event).getFilesElement() : null; if (filesElement != null) { for (Iterator i = filesElement.elements().iterator(); i.hasNext();) { final Element parameterElement = (Element) i.next(); final String name = parameterElement.element("name").getTextTrim(); final Element valueElement = parameterElement.element("value"); final String value = valueElement.getTextTrim(); // An empty value likely means that the user did not select a file. In this case, we don't // want to override an existing value in the instance. Clearing the value in the instance // will have to be done by other means, like a "clear file" button. if (value.length() == 0) continue; final XFormsUploadControl uploadControl = (XFormsUploadControl) containingDocument.getObjectById(pipelineContext, name); if (uploadControl != null) { // in case of xforms:repeat, the name of the template will not match an existing control final String paramValueType = Dom4jUtils.qNameToexplodedQName(Dom4jUtils.extractAttributeValueQName(valueElement, XMLConstants.XSI_TYPE_QNAME)); final String filename = parameterElement.element("filename").getTextTrim(); final String mediatype = parameterElement.element("content-type").getTextTrim(); final String size = parameterElement.element("content-length").getTextTrim(); // Set value of uploaded file into the instance (will be xs:anyURI or xs:base64Binary) uploadControl.setExternalValue(pipelineContext, value, paramValueType, !isReplaceAll); // Handle filename, mediatype and size if necessary uploadControl.setFilename(pipelineContext, filename); uploadControl.setMediatype(pipelineContext, mediatype); uploadControl.setSize(pipelineContext, size); } } } // Create document to submit final Document backupInstanceDocument = currentInstance.getInstanceDocument(); try { documentToSubmit = createDocumentToSubmit(currentNode, currentInstance); currentInstance.setInstanceDocument(documentToSubmit, false); // Revalidate instance model.doRevalidate(pipelineContext); // sent out. Check if the validation state can really change. If so, find a // solution. // "no notification events are marked for dispatching due to this operation" // Check that there are no validation errors final boolean instanceSatisfiesValidRequired = isDocumentSatisfiesValidRequired(documentToSubmit); if (!instanceSatisfiesValidRequired) { // currentInstance.readOut();// FIXME: DEBUG throw new OXFException("xforms:submission: instance to submit does not satisfy valid and/or required model item properties."); } } finally { currentInstance.setInstanceDocument(backupInstanceDocument, false); } } else { // Don't recreate document documentToSubmit = initialDocumentToSubmit; } // Fire xforms-submit-serialize containingDocument.dispatchEvent(pipelineContext, new XFormsSubmitSerializeEvent(XFormsModelSubmission.this)); // TODO: what follows must be executed as the default action of xforms-submit-serialize // Serialize // To support: application/xml, application/x-www-form-urlencoded, multipart/related, multipart/form-data final byte[] messageBody; final String queryString; final String defaultMediatype; { if (method.equals("multipart-post")) { if (!serialize) throw new OXFException("xforms:submission: method is incompatible with serialize=\"false\": " + method); // TODO throw new OXFException("xforms:submission: submission method not yet implemented: " + method); } else if (method.equals("form-data-post")) { if (!serialize) throw new OXFException("xforms:submission: method is incompatible with serialize=\"false\": " + method); // TODO// final MultipartFormDataBuilder builder = new MultipartFormDataBuilder(, , null); throw new OXFException("xforms:submission: submission method not yet implemented: " + method); } else if (method.equals("urlencoded-post")) { if (!serialize) throw new OXFException("xforms:submission: method is incompatible with serialize=\"false\": " + method); // Perform "application/x-www-form-urlencoded" serialization queryString = null; messageBody = createWwwFormUrlEncoded(documentToSubmit).getBytes("UTF-8");// the resulting string is already ASCII defaultMediatype = "application/x-www-form-urlencoded"; } else if (XFormsSubmissionUtils.isPost(method) || XFormsSubmissionUtils.isPut(method)) { if (!serialize) throw new OXFException("xforms:submission: method is incompatible with serialize=\"false\": " + method); // Serialize XML to a stream of bytes try { final Transformer identity = TransformerUtils.getIdentityTransformer(); TransformerUtils.applyOutputProperties(identity, "xml", version, null, null, encoding, omitxmldeclaration, standalone, indent, 4); // TODO: use cdata-section-elements final ByteArrayOutputStream os = new ByteArrayOutputStream(); identity.transform(new DocumentSource(documentToSubmit), new StreamResult(os)); messageBody = os.toByteArray(); } catch (Exception e) { throw new OXFException("xforms:submission: exception while serializing instance to XML.", e); } queryString = null; defaultMediatype = "application/xml"; } else if (XFormsSubmissionUtils.isGet(method) || XFormsSubmissionUtils.isDelete(method)) { // Perform "application/x-www-form-urlencoded" serialization queryString = serialize ? createWwwFormUrlEncoded(documentToSubmit) : null; messageBody = null; defaultMediatype = null; } else { throw new OXFException("xforms:submission: invalid submission method requested: " + method); } } final ExternalContext externalContext = (ExternalContext) pipelineContext.getAttribute(PipelineContext.EXTERNAL_CONTEXT); // Get URL type final String urlType = submissionElement.attributeValue(new QName("url-type", new Namespace("f", XMLConstants.OPS_FORMATTING_URI))); final ExternalContext.Request request = externalContext.getRequest(); // Result information ConnectionResult connectionResult = null; final long externalSubmissionStartTime = XFormsServer.logger.isDebugEnabled() ? System.currentTimeMillis() : 0; try { if (isReplaceInstance && resolvedAction.startsWith("test:")) { // Test action if (messageBody == null) throw new OXFException("Action 'test:' can only be used with POST method."); connectionResult = new ConnectionResult(null); connectionResult.resultCode = 200; connectionResult.resultHeaders = new HashMap(); connectionResult.lastModified = 0; connectionResult.resultMediaType = "application/xml"; connectionResult.dontHandleResponse = false; connectionResult.setResultInputStream(new ByteArrayInputStream(messageBody)); } else if (isHandlingOptimizedGet) { // GET with replace="all": we can optimize and tell the client to just load the URL connectionResult = doOptimizedGet(pipelineContext, queryString, xxfShowProgress); } else if (!NetUtils.urlHasProtocol(resolvedAction) && ((request.getContainerType().equals("portlet") && !"resource".equals(urlType)) || (request.getContainerType().equals("servlet") && (XFormsUtils.isOptimizeLocalSubmission() || isMethodOptimizedLocalSubmission()) && isReplaceAll))) { // This is an "optimized" submission, i.e. one that does not use an actual // protocol handler to access the resource // NOTE: Optimizing with include() for servlets doesn't allow detecting // errors caused by the included resource, so we don't allow this for now. // NOTE: For portlets, paths are served directly by the portlet, NOT as // resources. // Current limitations: // o Portlets cannot access resources outside the portlet except by using absolute URLs (unless f:url-type="resource") // o Servlets cannot access resources on the same server but not in the current application // except by using absolute URLs final URI resolvedURI = XFormsUtils.resolveXMLBase(submissionElement, resolvedAction); connectionResult = XFormsSubmissionUtils.doOptimized(pipelineContext, externalContext, this, method, resolvedURI.toString(), (mediatype == null) ? defaultMediatype : mediatype, isReplaceAll, messageBody, queryString); } else { // This is a regular remote submission going through a protocol handler // Absolute URLs or absolute paths are allowed to a local servlet String resolvedURL = XFormsUtils.resolveURL(containingDocument, pipelineContext, submissionElement, false, resolvedAction); if (request.getContainerType().equals("portlet") && "resource".equals(urlType) && !NetUtils.urlHasProtocol(resolvedURL)) { // In this case, we have to prepend the complete server path resolvedURL = request.getScheme() + "://" + request.getServerName() + (request.getServerPort() > 0 ? ":" + request.getServerPort() : "") + resolvedURL; } connectionResult = XFormsSubmissionUtils.doRegular(externalContext, method, resolvedURL, resolvedXXFormsUsername, resolvedXXFormsPassword, (mediatype == null) ? defaultMediatype : mediatype, messageBody, queryString); } if (!connectionResult.dontHandleResponse) { // Handle response if (connectionResult.resultCode >= 200 && connectionResult.resultCode < 300) {// accept any success code (in particular "201 Resource Created") // Sucessful response if (connectionResult.hasContent()) { // There is a body if (isReplaceAll) { // When we get here, we are in a mode where we need to send the reply // directly to an external context, if any. // "the event xforms-submit-done is dispatched" containingDocument.dispatchEvent(pipelineContext, new XFormsSubmitDoneEvent(XFormsModelSubmission.this)); final ExternalContext.Response response = externalContext.getResponse(); // Forward headers to response if (connectionResult.resultHeaders != null) { for (Iterator i = connectionResult.resultHeaders.entrySet().iterator(); i.hasNext();) { final Map.Entry currentEntry = (Map.Entry) i.next(); final String headerName = (String) currentEntry.getKey(); final String headerValue = (String) currentEntry.getValue(); // NOTE: We only get one header value per name if (headerName != null && headerValue != null) { response.addHeader(headerName, headerValue); } } } // Forward content to response NetUtils.copyStream(connectionResult.getResultInputStream(), response.getOutputStream()); } else if (isReplaceInstance) { if (ProcessorUtils.isXMLContentType(connectionResult.resultMediaType)) { // Handling of XML media type try { // Read stream into Document final Document resultingInstanceDocument = Dom4jUtils.read(connectionResult.getResultInputStream()); // Set new instance document to replace the one submitted final XFormsInstance replaceInstance; { if (xxfReplaceInstanceId != null) replaceInstance = containingDocument.findInstance(xxfReplaceInstanceId); else if (replaceInstanceId != null) replaceInstance = model.getInstance(replaceInstanceId); else replaceInstance = currentInstance; } if (replaceInstance == null) { // Replacement instance was specified but not found // TODO: XForms 1.1 won't dispatch xforms-binding-exception here containingDocument.dispatchEvent(pipelineContext, new XFormsBindingExceptionEvent(XFormsModelSubmission.this)); } else { // Set new instance replaceInstance.setInstanceDocument(resultingInstanceDocument, true); // Mark all values as changed so that refresh sends appropriate events XFormsUtils.markAllValuesChanged(replaceInstance); // Handle new instance and associated events replaceInstance.getModel().handleNewInstanceDocuments(pipelineContext); // Notify that submission is done submitDone = true; } } catch (Exception e) { submitErrorEvent = createErrorEvent(connectionResult); throw new OXFException("xforms:submission: exception while serializing XML to instance.", e); } } else { // Other media type submitErrorEvent = createErrorEvent(connectionResult); throw new OXFException("Body received with non-XML media type for replace=\"instance\": " + connectionResult.resultMediaType); } } else if (replace.equals(XFormsConstants.XFORMS_SUBMIT_REPLACE_NONE)) { // Just notify that processing is terminated submitDone = true; } else { submitErrorEvent = createErrorEvent(connectionResult); throw new OXFException("xforms:submission: invalid replace attribute: " + replace); } } else { // There is no body, notify that processing is terminated submitDone = true; } } else if (connectionResult.resultCode == 302 || connectionResult.resultCode == 301) { // Got a redirect final ExternalContext.Response response = externalContext.getResponse(); // Forward headers to response // TODO: this is duplicated from above if (connectionResult.resultHeaders != null) { for (Iterator i = connectionResult.resultHeaders.entrySet().iterator(); i.hasNext();) { final Map.Entry currentEntry = (Map.Entry) i.next(); final String headerName = (String) currentEntry.getKey(); final List headerValues = (List) currentEntry.getValue(); if (headerName != null && headerValues != null) { for (Iterator j = headerValues.iterator(); j.hasNext();) { response.addHeader(headerName, (String) j.next()); } } } } // Forward redirect response.setStatus(connectionResult.resultCode); } else { // Error code received submitErrorEvent = createErrorEvent(connectionResult); throw new OXFException("Error code received when submitting instance: " + connectionResult.resultCode); } } } finally { // Clean-up if (connectionResult != null) { connectionResult.close(); } // Log time spent in submission if needed if (XFormsServer.logger.isDebugEnabled()) { final long submissionTime = System.currentTimeMillis() - externalSubmissionStartTime; XFormsServer.logger.debug("XForms - external submission time (including handling returned body): " + submissionTime); } } } catch (Throwable e) { if (isDeferredSubmissionSecondPass && XFormsUtils.isOptimizePostAllSubmission()) { // It doesn't serve any purpose here to dispatch an event, so we just propagate the exception throw new OXFException(e); } else { // Any exception will cause an error event to be dispatched if (submitErrorEvent == null) submitErrorEvent = new XFormsSubmitErrorEvent(XFormsModelSubmission.this, resolvedAction); 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{ logger.info("Reading config file from " + configFile); System.out.println("readConfiguration:" + configFile); AtomTypeConfigurator atc = null; | { logger.info("Reading config file from " + configFile); AtomTypeConfigurator atc = null; | private void readConfiguration(String configFile) { logger.info("Reading config file from " + configFile); System.out.println("readConfiguration:" + configFile); AtomTypeConfigurator atc = null; InputStream ins = null; { /* * mth 2003 05 05 * Egon, I'm leaving these comments in here so that you can * clean them up. * The code that was here was breaking the applet. * In addition, I do not understand the purpose of some * of the tests ... let's talk */ // try to see if this configFile is an actual file System.out.println("make a file"); File f = new File(configFile); System.out.println("made a file"); try { /* * mth 2003 05 05 * You cannot do this f.exists() test in an applet * ... security violation */ if (f.exists()) { System.out.println("it exists"); logger.debug("configFile is a File"); // what's next? try { System.out.println("trying as a FileInputStream"); ins = new FileInputStream(f); } catch (Exception exc) { logger.error(exc.toString()); } } } catch (Exception e) { System.out.println("exception raised testing file existence"); } if (ins == null) { System.out.println("it does not exist"); logger.debug("configFile must be a stream"); // assume it is a default config file in distro /* * this has to be this.getClass.getClassLoader.getResource, * getClass.getResource fails, elw * * mth 2003 05 05 * not sure in what context it is failing * If you want to look for files which are in the same * directory as this file, then you don't want to * put in the call to getClassLoader */ System.out.println("made it to getResourceAsStream:" + configFile); ins = getClass().getResourceAsStream(configFile); } if (ins == null) { logger.error("There was a problem getting a stream for " + configFile); System.out.println("failed getResourceAsStream"); } } try { /* * This class loading mechanism is used to not depend on JSX, * which is needed for old JVM's like in older browsers. */ if (configFile.endsWith("txt")) { atc = (AtomTypeConfigurator) this.getClass().getClassLoader(). loadClass("org.openscience.cdk.tools.TXTBasedAtomTypeConfigurator"). newInstance(); } else if (configFile.endsWith("xml")) { atc = (AtomTypeConfigurator) this.getClass().getClassLoader(). loadClass("org.openscience.cdk.tools.JSXBasedAtomTypeConfigurator"). newInstance(); } logger.debug("Instantiated a AtomTypeConfigurator of class: " + atc.getClass().getName()); } catch (Exception exc) { logger.error("Could not get instance of AtomTypeConfigurator for " + configFile); } if (atc != null) { atc.setInputStream(ins); try { atomTypes = atc.readAtomTypes(); } catch (Exception exc) { logger.error("Could not read AtomType's from file due to: " + exc.toString()); } } else { logger.debug("AtomTypeConfigurator was null!"); atomTypes = new Vector(); } } | 45167 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45167/ce72e272e817113dbe1977ae4e03ff8d50b3763a/AtomTypeFactory.java/buggy/src/org/openscience/cdk/tools/AtomTypeFactory.java | [
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rc = (RequestCompanion)_requests.remove( args.argv(1) ) ; | rc = (RequestCompanion)_requests.get( args.argv(1) ) ; | private synchronized void processServerReply( Args args ){ if( args.argc() < 2 ){ if(_debug)System.err.println( "Zero answer from server" ) ; return ; } RequestCompanion rc = null ; if( args.argv(0).equals( "ok" ) ){ rc = (RequestCompanion)_requests.remove( args.argv(1) ) ; if( rc instanceof QueryCompanion ){ QueryCompanion qc = (QueryCompanion)rc ; if( args.argc() < 3 ){ if(_debug)System.err.println( "Incomplet answer from server" ) ; return ; } qc.setReturnCode( 0 , args.argv(2) ) ; }else if( rc instanceof ListCompanion ){ ListCompanion lc = (ListCompanion)rc ; if( args.argc() < 2 ){ if(_debug)System.err.println( "Incomplet answer from server" ) ; return ; } if( args.argv(0).equals("ok") ){ lc.setReturnCode( 0 , "" ) ; }else{ int rcd = 33 ; if( args.argc() > 2 ){ try{ rcd = Integer.parseInt( args.argv(2) ) ; }catch(Exception e){} } String msg = "Error="+rcd ; if( args.argc() > 3 )msg = args.argv(3) ; lc.setReturnCode( rcd , msg ) ; } }else{ rc.setReturnCode( 99 , "PANIC : Unknown companion found" ) ; } synchronized( _pendingLock ){ _pending-- ; _pendingLock.notifyAll() ; } return ; }else if( args.argv(0).equals( "failed" ) ){ rc = (RequestCompanion)_requests.remove( args.argv(1) ) ; if( args.argc() < 4 ){ if(_debug)System.err.println( "Incomplet negative answer from server" ) ; return ; } rc.setReturnCode( Integer.parseInt(args.argv(2)) , args.argv(3) ) ; synchronized( _pendingLock ){ _pending-- ; _pendingLock.notifyAll() ; } return ; }else if( args.argv(0).equals( "OK" ) ){ if( args.argc() < 4 ){ // // REMOVEX request // if( args.argc() != 2 ){ System.err.println( "invalid OK from server (noId)" ) ; return ; } rc = (RequestCompanion)_requests.remove( args.argv(1) ) ; if( rc == null ){ System.err.println( "we were not waiting for this request : "+args.argv(1) ) ; return ; } synchronized( _pendingLock ){ rc.setReturnCode( 0 , "o.k." ); _pending-- ; _pendingLock.notifyAll() ; } return ; } rc = (RequestCompanion)_requests.get( args.argv(3) ) ; if( rc == null ){ System.err.println( "we were not waiting for this request : "+args.argv(3) ) ; return ; } rc.setServerId( args.argv(1) ) ; _requests.put( args.argv(1) , rc ) ; if( rc instanceof PutCompanion ){ PutCompanion pc = (PutCompanion)rc ; pc.setBfid( args.argv(2) ) ; }else if( rc instanceof GetCompanion ){ GetCompanion gc = (GetCompanion)rc ; gc.setSize( Long.parseLong( args.argv(2) ) ) ; } }else if( args.argv(0).equals( "BBACK" ) ){ String serverId = args.argv(1) ; String bfid = args.argv(2) ; String rcode = args.argv(3) ; String rmsg = args.argv(4) ; rc = (RequestCompanion)_requests.remove( serverId ) ; if( rc == null ){ System.err.println( "server id not found : "+serverId ) ; return ; } if( _requests.remove( rc.getId() ) == null ){ System.err.println( "client id not found : "+rc.getId() ) ; return ; } synchronized( _pendingLock ){ rc.setReturnCode( Integer.parseInt(rcode) , rmsg ); _pending-- ; _pendingLock.notifyAll() ; } }else if( args.argv(0).equals( "NOK" ) ){ Enumeration e = _requests.elements() ; if( ! e.hasMoreElements() ){ System.err.println( "NOK arrived for non request" ) ; System.exit(66); } rc = (RequestCompanion)e.nextElement() ; rc.setReturnCode( Integer.parseInt(args.argv(1)) , args.argv(2) ); synchronized( _pendingLock ){ _pending-- ; _pendingLock.notifyAll() ; } return ; }else if( args.argv(0).equals( "CANCEL" )){ Enumeration e = _requests.elements() ; if( ! e.hasMoreElements() ){ System.err.println( "CANCEL arrived for non request" ) ; System.exit(66); } rc = (RequestCompanion)e.nextElement() ; rc.setReturnCode( Integer.parseInt(args.argv(2)) , args.argv(3) ); synchronized( _pendingLock ){ _pending-- ; _pendingLock.notifyAll() ; } return ; }else{ System.err.print( "Nok from server : " ) ; for( int i = 0 ; i < args.argc() ; i++ ) System.err.print( args.argv(i)+" ") ; System.err.println(""); synchronized( _pendingLock ){ _pending-- ; _pendingLock.notifyAll() ; } return ; } } | 3665 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3665/2fc49aea7c7c02676c48d15c769c436b4a9b1814/EuroSyncClient.java/buggy/gate/EuroSyncClient.java | [
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public SubActionBars(final IActionBars parent, final IServiceLocator serviceLocator) { if (parent == null) { throw new NullPointerException("The parent cannot be null"); } this.parent = parent; this.serviceLocator = serviceLocator; | public SubActionBars(final IActionBars parent) { this(parent, null); | public SubActionBars(final IActionBars parent, final IServiceLocator serviceLocator) { if (parent == null) { throw new NullPointerException("The parent cannot be null"); //$NON-NLS-1$ } this.parent = parent; this.serviceLocator = serviceLocator; } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/b35e17885e49e88a0f1c7d1ccd08dda44663c277/SubActionBars.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/SubActionBars.java | [
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public long getLastValidated(File jar){ long validated = 0L; try{ conn = getConnection(); String jarFileURL = jar.toURL().toExternalForm(); //System.out.println("[] getLastValidated "+jarFileURL); PreparedStatement stmt = conn.prepareStatement(_selectValidated); stmt.setString(1, jarFileURL); ResultSet results = stmt.executeQuery(); if (results.next()) { String version = results.getString(2); //System.out.println("[] version "+version); if (version == null || version.equals(getVersion())) { validated = results.getLong(1); //System.out.println("[] validated "+validated); } } } catch (Exception e){ // TODO:1: Log something... //e.printStackTrace(); } finally { try{conn.close();} catch (Exception e){} } return validated; } | 47052 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47052/4f52760bc3704be4f698b6ed3a2b5ae33ca1fa83/ValidationTable.java/buggy/openejb1/modules/core/src/java/org/openejb/alt/config/ValidationTable.java | [
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execute(next, nextContent); | executeHeader(next, nextContent); | public boolean hasNextChild( ) { if(!needUpdate) { return hasNext; } if(currentRunIn!=null) { if(currentRunIn.hasNextChild( )) { hasNext = true; needUpdate = false; return hasNext; } else { currentRunIn.close( ); } } currentRunIn = null; while(executor.hasNextChild( )) { IReportItemExecutor next = executor.getNextChild( ); IContent nextContent = next.execute( ); if(nextContent instanceof IListBandContent) { IListBandContent band = (IListBandContent)nextContent; if(repeat && (band.getBandType( )==IBandContent.BAND_HEADER || band.getBandType( )==IBandContent.BAND_GROUP_HEADER)) { execute(next, nextContent); next.close( ); next = new DOMReportItemExecutor(nextContent); next.execute( ); nextContent.getParent( ).getChildren( ).add( nextContent ); } if(next.hasNextChild( )) { currentRunIn = next; break; } } else { childExecutor = next; childContent = nextContent; break; } } if(currentRunIn!=null || childContent!=null) { hasNext = true; } else { hasNext = false; } needUpdate = false; return hasNext; } | 12803 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12803/b859db429494e9aee3f7db11c712b8daba034365/ListContainerExecutor.java/buggy/engine/org.eclipse.birt.report.engine/src/org/eclipse/birt/report/engine/layout/content/ListContainerExecutor.java | [
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"<LocalElt>2</LocalElt></foo:LocalStrict>"); | "<NoNSElt>2</NoNSElt></foo:LocalStrict>"); | public void testLocalStrictLegal() throws Throwable { LocalStrictDocument doc = LocalStrictDocument.Factory .parse("<foo:LocalStrict " + " xmlns:foo=\"http://xbean/scomp/namespace/ElementWC\">" + "<LocalElt>2</LocalElt></foo:LocalStrict>"); if (!doc.validate(validateOptions)) { showErrors(); fail("test failed"); } } | 3520 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3520/6fb2092dc42215a3e86cd61e15efb4d667b2282e/ElementWC.java/buggy/v2/test/src/scomp/namespace/detailed/ElementWC.java | [
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{ List props = element.getStyleProperties( ); if ( props.isEmpty( ) ) return; writeSectionHeader( "Style Properties" ); writeln( "<p class=\"section-text\">" ); Iterator iter = props.iterator( ); while ( iter.hasNext( ) ) { PropertyDefn prop = (PropertyDefn) iter.next( ); write( makeMemberReference( null, prop.definedBy( ).getName( ), PROPERTY_NAME, prop.getName( ) ) ); if ( iter.hasNext( ) ) writeln( ", " ); } writeln( "\n</p>" ); } | { List props = element.getStyleProperties( ); if ( props.isEmpty( ) ) return; writeSectionHeader( "Style Properties" ); writeln( "<p class=\"section-text\">" ); Iterator iter = props.iterator( ); while ( iter.hasNext( ) ) { PropertyDefn prop = (PropertyDefn) iter.next( ); write( makeMemberReference( null, prop.definedBy( ).getName( ), PROPERTY_NAME, prop.getName( ) ) ); if ( iter.hasNext( ) ) writeln( ", " ); } writeln( "\n</p>" ); } | private void writeStyleProperties( DocElement element ) { List props = element.getStyleProperties( ); if ( props.isEmpty( ) ) return; writeSectionHeader( "Style Properties" ); writeln( "<p class=\"section-text\">" ); Iterator iter = props.iterator( ); while ( iter.hasNext( ) ) { PropertyDefn prop = (PropertyDefn) iter.next( ); write( makeMemberReference( null, prop.definedBy( ).getName( ), PROPERTY_NAME, prop.getName( ) ) ); if ( iter.hasNext( ) ) writeln( ", " ); } writeln( "\n</p>" ); } | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/2012a7e6d8d91844c6c396ee5b7b69a4345dea99/Generator.java/buggy/model/org.eclipse.birt.report.model/romdoc/src/org/eclipse/birt/doc/romdoc/Generator.java | [
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protected void addFileSet(String path, String[] includes, String[] excludes, String relPath, List osList, ArrayList list, boolean casesensitive, int override) throws CompilerException { File test = new File(path); if (test.isDirectory()) { DirectoryScanner ds = new DirectoryScanner(); ds.setIncludes(includes); ds.setExcludes(excludes); ds.setBasedir(new File(path)); ds.setCaseSensitive(casesensitive); ds.scan(); String[] files = ds.getIncludedFiles(); String[] dirs = ds.getIncludedDirectories(); /* Old buggy code String newRelativePath = null; String absolutBasePath = test.getParentFile().getAbsolutePath(); String absolutPath = test.getAbsolutePath(); String absolutFilePath = null; int copyPathFrom = absolutBasePath.length() + 1; for (int i = 0; i < files.length; i++) { File file = new File(absolutPath + File.separator + files[i]); absolutFilePath = file.getParentFile().getAbsolutePath(); newRelativePath = relPath + File.separator + absolutFilePath.substring(copyPathFrom); //FIX ME: the override for fileset is by default true, needs to be changed addFile(file, newRelativePath, targetOs, true, list); } */ // New working code (for files) String filePath, instPath, expPath; int pathLimit; File file; for (int i = 0; i < files.length; ++i) { filePath = path + File.separator + files[i]; expPath = relPath + File.separator + files[i]; file = new File(filePath); pathLimit = expPath.indexOf(file.getName()); if (pathLimit > 0) instPath = expPath.substring(0, pathLimit); else instPath = relPath; addFile(file, instPath, osList, override, list); } // Empty directories are left by the previous code section, so we need to // take care of them for (int i = 0; i < dirs.length; ++i) { expPath = path + File.separator + dirs[i]; File dir = new File(expPath); if (dir.list().length == 0) { instPath = relPath + File.separator + dirs[i]; pathLimit = instPath.indexOf(dir.getName()); instPath = instPath.substring(0, pathLimit); addFile(dir, instPath, osList, override, list); } } } else throw new CompilerException("\"dir\" attribute of fileset is not valid: " + path); } | 54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java | [
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} else if (type.equals("selectFromChemObject")) { | } else if (type.equals("selectMolecule")) { ChemObject object = getSource(event); if (object instanceof Atom) { renderModel.setSelectedPart(ChemModelManipulator.getRelevantAtomContainer(jcpModel.getChemModel(),(Atom)object)); } else if (object instanceof Bond) { renderModel.setSelectedPart(ChemModelManipulator.getRelevantAtomContainer(jcpModel.getChemModel(),(Bond)object)); } else { logger.warn("selectMolecule not defined for the calling object ", object); } jcpModel.fireChange(); } else if (type.equals("selectFromChemObject")) { | public void actionPerformed(ActionEvent event) { // learn some stuff about event logger.debug("Event source: ", event.getSource().getClass().getName()); logger.debug(" ChemObject: ", getSource(event)); JChemPaintModel jcpModel = jcpPanel.getJChemPaintModel(); Renderer2DModel renderModel = jcpModel.getRendererModel(); ChemModel chemModel = jcpModel.getChemModel(); if (type.equals("cut")) { Atom atomInRange = null; ChemObject object = getSource(event); logger.debug("Source of call: ", object); if (object instanceof Atom) { atomInRange = (Atom) object; } else { atomInRange = renderModel.getHighlightedAtom(); } if (atomInRange != null) { ChemModelManipulator.removeAtomAndConnectedElectronContainers(chemModel, atomInRange); } else { Bond bond = renderModel.getHighlightedBond(); if (bond != null) { ChemModelManipulator.removeElectronContainer(chemModel, bond); } } jcpModel.fireChange(); } else if (type.equals("cutSelected")) { logger.debug("Deleting all selected atoms..."); if (renderModel.getSelectedPart() == null || renderModel.getSelectedPart().getAtoms().length == 0) { JOptionPane.showMessageDialog(jcpPanel, "No selection made. Please select some atoms first!", "Error warning", JOptionPane.WARNING_MESSAGE); } else { Atom[] selected = renderModel.getSelectedPart().getAtoms(); logger.debug("Found # atoms to delete: ", selected.length); for (int i = 0; i < selected.length; i++) { ChemModelManipulator.removeAtomAndConnectedElectronContainers(chemModel, selected[i]); } } renderModel.setSelectedPart(new AtomContainer()); jcpModel.fireChange(); } else if (type.equals("selectAll")) { renderModel.setSelectedPart(ChemModelManipulator.getAllInOneContainer(jcpModel.getChemModel())); jcpModel.fireChange(); } else if (type.equals("selectFromChemObject")) { // FIXME: implement for others than Reaction, Atom, Bond ChemObject object = getSource(event); if (object instanceof Atom) { AtomContainer container = new AtomContainer(); container.addAtom((Atom) object); renderModel.setSelectedPart(container); jcpModel.fireChange(); } else if (object instanceof Bond) { AtomContainer container = new AtomContainer(); container.addBond((Bond) object); renderModel.setSelectedPart(container); jcpModel.fireChange(); } else if (object instanceof Reaction) { renderModel.setSelectedPart(ReactionManipulator.getAllInOneContainer((Reaction) object)); jcpModel.fireChange(); } else { logger.warn("Cannot select everything in : ", object); } } else if (type.equals("selectReactionReactants")) { ChemObject object = getSource(event); if (object instanceof Reaction) { Reaction reaction = (Reaction) object; renderModel.setSelectedPart(SetOfMoleculesManipulator.getAllInOneContainer(reaction.getReactants())); jcpModel.fireChange(); } else { logger.warn("Cannot select reactants from : ", object); } } else if (type.equals("selectReactionProducts")) { ChemObject object = getSource(event); if (object instanceof Reaction) { Reaction reaction = (Reaction) object; renderModel.setSelectedPart(SetOfMoleculesManipulator.getAllInOneContainer(reaction.getProducts())); jcpModel.fireChange(); } else { logger.warn("Cannot select reactants from : ", object); } } else { logger.warn("Unsupported EditAction: " + type); } } | 1306 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1306/4aa85b612d05d155adadf78e20d6034079c18106/EditAction.java/buggy/src/org/openscience/cdk/applications/jchempaint/action/EditAction.java | [
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assertEquals(new String(((Message)tempEvt.getArg()).getBuffer()),"hello2"); | assertEquals("hello2", new String(((Message)tempEvt.getArg()).getBuffer())); | public void testViewChangeNewKeyServer() throws Exception{ // create peer and server ENCRYPT peer = new ENCRYPT(); try { peer.init(); } catch (Exception e){ fail(e.getMessage()); } ENCRYPT server = new ENCRYPT(); try { server.init(); } catch (Exception e){ fail(e.getMessage()); } // set up server server.keyServer = true; MockObserver serverObserver = new MockObserver(); server.setObserver(serverObserver); Address serverAddress =new MockAddress("server"); server.setLocal_addr(serverAddress); //set the server up as keyserver Vector serverVector = new Vector(); serverVector.add(serverAddress); View tempView = new View(new ViewId(serverAddress,1),serverVector); Event serverEvent = new Event(Event.VIEW_CHANGE,tempView); server.up(serverEvent); // set up peer Address peerAddress =new MockAddress("peer"); peer.setLocal_addr(peerAddress); MockObserver peerObserver = new MockObserver(); peer.setObserver(peerObserver); peer.keyServer = false; MessageDigest digest = MessageDigest.getInstance("MD5"); digest.reset(); digest.update(server.getDesKey().getEncoded()); String symVersion = new String(digest.digest(), "UTF-8"); // encrypt and send an initial message to peer Cipher cipher = server.getSymEncodingCipher(); Message msg = new Message(); msg.setBuffer(cipher.doFinal("hello".getBytes())); msg.putHeader(EncryptHeader.KEY, new EncryptHeader( EncryptHeader.ENCRYPT, symVersion)); Event evt = new Event(Event.MSG,msg); peer.up(evt); //assert that message is queued as we have no key from server assertTrue(peerObserver.getUpMessages().isEmpty()); // send a view change where we are not the controller // send to peer - which should have peer2 as its key server peer.up(serverEvent); // assert that peer\ keyserver address is now set assertTrue(serverAddress == peer.getKeyServerAddr()); // get the resulting message from the peer - should be a key request Event sent = (Event)peerObserver.getDownMessages().get("message0"); assertTrue(((EncryptHeader)((Message)sent.getArg()).getHeader(ENCRYPT.EncryptHeader.KEY)).getType() == ENCRYPT.EncryptHeader.KEY_REQUEST); assertEquals(new String(((Message)sent.getArg()).getBuffer()),new String(peer.getKpair().getPublic().getEncoded())); // send this event to server server.up(sent); Event reply = (Event)serverObserver.getDownMessages().get("message1"); //assert that reply is the session key encrypted with peer's public key assertTrue(((EncryptHeader)((Message)reply.getArg()).getHeader(ENCRYPT.EncryptHeader.KEY)).getType() == ENCRYPT.EncryptHeader.SECRETKEY); assertNotSame(peer.getDesKey(),server.getDesKey()); // now send back to peer peer.up(reply); // assert that both now have same key assertEquals(peer.getDesKey(),server.getDesKey()); // send another encrypted message to peer to test queue Message msg2 = new Message(); msg2.setBuffer(cipher.doFinal("hello2".getBytes())); msg2.putHeader(EncryptHeader.KEY, new EncryptHeader( EncryptHeader.ENCRYPT, symVersion)); Event evt2 = new Event(Event.MSG,msg2); peer.up(evt2); // make sure we have the events now in the up layers assertEquals(3,peerObserver.getUpMessages().size()); Event tempEvt = (Event)peerObserver.getUpMessages().get("message2"); assertEquals(new String(((Message)tempEvt.getArg()).getBuffer()),"hello"); tempEvt = (Event)peerObserver.getUpMessages().get("message3"); assertEquals(new String(((Message)tempEvt.getArg()).getBuffer()),"hello2"); } | 47927 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47927/6cf135ab0aec1dba727f94146eb1d03ec797779c/ENCRYPTAsymmetricTest.java/clean/tests/junit/org/jgroups/protocols/ENCRYPTAsymmetricTest.java | [
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fElementQNamePartsStack[fElementDepth].setValues(fCurrentElement); | fElementEntityStack[fElementDepth] = fCurrentElementEntity; fElementIndexStack[fElementDepth] = fCurrentElementIndex; fContentSpecTypeStack[fElementDepth] = fCurrentContentSpecType; | public void callStartElement(QName element) throws Exception { if ( DEBUG_SCHEMA_VALIDATION ) System.out.println("\n=======StartElement : " + fStringPool.toString(element.localpart)); // // Check after all specified attrs are scanned // (1) report error for REQUIRED attrs that are missing (V_TAGc) // (2) add default attrs (FIXED and NOT_FIXED) // if (!fSeenRootElement) { fSeenRootElement = true; rootElementSpecified(element); fStringPool.resetShuffleCount(); } if (fGrammar != null && fGrammarIsDTDGrammar) { fAttrListHandle = addDTDDefaultAttributes(element, fAttrList, fAttrListHandle, fValidating, fStandaloneReader != -1); } fCheckedForSchema = true; if (fNamespacesEnabled) { bindNamespacesToElementAndAttributes(element, fAttrList); } validateElementAndAttributes(element, fAttrList); if (fAttrListHandle != -1) { fAttrList.endAttrList(); } fDocumentHandler.startElement(element, fAttrList, fAttrListHandle); fAttrListHandle = -1; //before we increment the element depth, add this element's QName to its enclosing element 's children list fElementDepth++; //if (fElementDepth >= 0) { if (fValidating) { // push current length onto stack if (fElementChildrenOffsetStack.length < fElementDepth) { int newarray[] = new int[fElementChildrenOffsetStack.length * 2]; System.arraycopy(fElementChildrenOffsetStack, 0, newarray, 0, fElementChildrenOffsetStack.length); fElementChildrenOffsetStack = newarray; } fElementChildrenOffsetStack[fElementDepth] = fElementChildrenLength; // add this element to children if (fElementChildren.length <= fElementChildrenLength) { QName[] newarray = new QName[fElementChildrenLength * 2]; System.arraycopy(fElementChildren, 0, newarray, 0, fElementChildren.length); fElementChildren = newarray; } QName qname = fElementChildren[fElementChildrenLength]; if (qname == null) { for (int i = fElementChildrenLength; i < fElementChildren.length; i++) { fElementChildren[i] = new QName(); } qname = fElementChildren[fElementChildrenLength]; } qname.setValues(element); fElementChildrenLength++; if (DEBUG_ELEMENT_CHILDREN) { printChildren(); printStack(); } } // One more level of depth //fElementDepth++; ensureStackCapacity(fElementDepth); fCurrentElement.setValues(element); fCurrentElementEntity = fEntityHandler.getReaderId(); fElementQNamePartsStack[fElementDepth].setValues(fCurrentElement); fElementEntityStack[fElementDepth] = fCurrentElementEntity; fElementIndexStack[fElementDepth] = fCurrentElementIndex; fContentSpecTypeStack[fElementDepth] = fCurrentContentSpecType; if (fNeedValidationOff) { fValidating = false; fNeedValidationOff = false; } if (fValidating && fGrammarIsSchemaGrammar) { pushContentLeafStack(); } fValidationFlagStack[fElementDepth] = fValidating ? 0 : -1; fScopeStack[fElementDepth] = fCurrentScope; fGrammarNameSpaceIndexStack[fElementDepth] = fGrammarNameSpaceIndex; } // callStartElement(QName) | 6373 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6373/b36768aae85d6d13bc8c8289ca78efb212c8fb8f/XMLValidator.java/clean/src/org/apache/xerces/validators/common/XMLValidator.java | [
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else if ( CModuleProperties.BASE_ADDRESS.equals( entry.getKey() ) ) { | else if ( CModuleProperties.BASE_ADDRESS.equals( property.getKey() ) ) { | public String getColumnText( Object element, int columnIndex ) { if ( element instanceof Map.Entry ) { Map.Entry entry = (Map.Entry)element; if ( CModuleProperties.TYPE.equals( entry.getKey() ) ) { if ( columnIndex == 0 ) { return "Type"; } else { Integer type = (Integer)entry.getValue(); if ( type.intValue() == ICModule.EXECUTABLE ) { return "executable"; } if ( type.intValue() == ICModule.SHARED_LIBRARY ) { return "shared library"; } if ( type.intValue() == ICModule.CORE ) { return "core file"; } } } else if ( CModuleProperties.CPU.equals( entry.getKey() ) ) { if ( columnIndex == 0 ) { return "CPU"; } String cpu = (String)entry.getValue(); return ( cpu != null ) ? cpu : "not available"; } else if ( CModuleProperties.BASE_ADDRESS.equals( entry.getKey() ) ) { if ( columnIndex == 0 ) { return "Base address"; } IAddress address = (IAddress)entry.getValue(); return ( address != null && !address.isZero() ) ? address.toHexAddressString() : "not available"; } else if ( CModuleProperties.SIZE.equals( entry.getKey() ) ) { if ( columnIndex == 0 ) { return "Size"; } Long size = (Long)entry.getValue(); return ( size != null && size.longValue() > 0 ) ? size.toString() : "not available"; } else if ( CModuleProperties.SYMBOLS_LOADED.equals( entry.getKey() ) ) { if ( columnIndex == 0 ) { return "Symbols"; } Boolean loaded = (Boolean)entry.getValue(); return ( loaded != null && loaded.booleanValue() ) ? "loaded" : "not loaded"; } else if ( CModuleProperties.SYMBOLS_FILE.equals( entry.getKey() ) ) { if ( columnIndex == 0 ) { return "Symbols file"; } IPath path = (IPath)entry.getValue(); return ( path != null ) ? path.toOSString() : "not found"; } } return null; } | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/0db65d300fd055308f3a9471af7d2ae5d2e7f159/ModulePropertyPage.java/buggy/debug/org.eclipse.cdt.debug.ui/src/org/eclipse/cdt/debug/internal/ui/propertypages/ModulePropertyPage.java | [
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consumer.setMessageListener(messageList); | messageList[i] = new MessageList(); consumer.setMessageListener(messageList[i]); | protected void setUp() throws Exception { messageList.setVerbose(true); connections = new Connection[NUMBER_IN_CLUSTER]; producers = new MessageProducer[NUMBER_IN_CLUSTER]; Destination destination = createDestination(); String root = System.getProperty("activemq.store.dir"); for (int i = 0;i < NUMBER_IN_CLUSTER;i++) { System.setProperty("activemq.store.dir", root + "_broker_" + i); connections[i] = createConnection(); connections[i].setClientID("ClusterTest" + i); connections[i].start(); Session session = connections[i].createSession(false, Session.AUTO_ACKNOWLEDGE); producers[i] = session.createProducer(destination); producers[i].setDeliveryMode(deliveryMode); MessageConsumer consumer = createMessageConsumer(session, destination); consumer.setMessageListener(messageList); } System.out.println("Sleeping to ensure cluster is fully connected"); Thread.sleep(10000); System.out.println("Finished sleeping"); } | 17032 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17032/8032ef40bea6bb08d0f8151866beadd7cafb9eb1/PeerTransportTest.java/buggy/activemq-core/src/test/java/org/activemq/transport/peer/PeerTransportTest.java | [
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queues[6] = new LocalClusteredQueue(office1, "node1", "sub7", im.getId(), ms, pm, true, true, (QueuedExecutor)pool.get(), null, tr); | queues[6] = new LocalClusteredQueue(office1, 1, "sub7", im.getId(), ms, pm, true, true, (QueuedExecutor)pool.get(), null, tr); | protected void clusteredTransactionalRoute(boolean persistent) throws Throwable { ClusteredPostOffice office1 = null; ClusteredPostOffice office2 = null; try { //Start two offices office1 = createClusteredPostOffice("node1", "testgroup"); office2 = createClusteredPostOffice("node2", "testgroup"); LocalClusteredQueue[] queues = new LocalClusteredQueue[16]; Binding[] bindings = new Binding[16]; queues[0] = new LocalClusteredQueue(office1, "node1", "sub1", im.getId(), ms, pm, true, false, (QueuedExecutor)pool.get(), null, tr); bindings[0] = office1.bindClusteredQueue("topic1", queues[0]); queues[1] = new LocalClusteredQueue(office1, "node1", "sub2", im.getId(), ms, pm, true, false, (QueuedExecutor)pool.get(), null, tr); bindings[1] = office1.bindClusteredQueue("topic1", queues[1]); queues[2] = new LocalClusteredQueue(office2, "node2", "sub3", im.getId(), ms, pm, true, false, (QueuedExecutor)pool.get(), null, tr); bindings[2] = office2.bindClusteredQueue("topic1", queues[2]); queues[3] = new LocalClusteredQueue(office2, "node2", "sub4", im.getId(), ms, pm, true, false, (QueuedExecutor)pool.get(), null, tr); bindings[3] = office2.bindClusteredQueue("topic1", queues[3]); queues[4] = new LocalClusteredQueue(office2, "node2", "sub5", im.getId(), ms, pm, true, true, (QueuedExecutor)pool.get(), null, tr); bindings[4] = office2.bindClusteredQueue("topic1", queues[4]); queues[5] = new LocalClusteredQueue(office1, "node1", "sub6", im.getId(), ms, pm, true, false, (QueuedExecutor)pool.get(), null, tr); bindings[5] = office1.bindClusteredQueue("topic1", queues[5]); queues[6] = new LocalClusteredQueue(office1, "node1", "sub7", im.getId(), ms, pm, true, true, (QueuedExecutor)pool.get(), null, tr); bindings[6] = office1.bindClusteredQueue("topic1", queues[6]); queues[7] = new LocalClusteredQueue(office1, "node1", "sub8", im.getId(), ms, pm, true, true, (QueuedExecutor)pool.get(), null, tr); bindings[7] = office1.bindClusteredQueue("topic1", queues[7]); queues[8] = new LocalClusteredQueue(office1, "node1", "sub9", im.getId(), ms, pm, true, false, (QueuedExecutor)pool.get(), null, tr); bindings[8] = office1.bindClusteredQueue("topic2", queues[8]); queues[9] = new LocalClusteredQueue(office1, "node1", "sub10", im.getId(), ms, pm, true, false, (QueuedExecutor)pool.get(), null, tr); bindings[9] = office1.bindClusteredQueue("topic2", queues[9]); queues[10] = new LocalClusteredQueue(office2, "node2", "sub11", im.getId(), ms, pm, true, false, (QueuedExecutor)pool.get(), null, tr); bindings[10] = office2.bindClusteredQueue("topic2", queues[10]); queues[11] = new LocalClusteredQueue(office2, "node2", "sub12", im.getId(), ms, pm, true, false, (QueuedExecutor)pool.get(), null, tr); bindings[11] = office2.bindClusteredQueue("topic2", queues[11]); queues[12] = new LocalClusteredQueue(office2, "node2", "sub13", im.getId(), ms, pm, true, true, (QueuedExecutor)pool.get(), null, tr); bindings[12] = office2.bindClusteredQueue("topic2", queues[12]); queues[13] = new LocalClusteredQueue(office1, "node1", "sub14", im.getId(), ms, pm, true, false, (QueuedExecutor)pool.get(), null, tr); bindings[13] = office1.bindClusteredQueue("topic2", queues[13]); queues[14] = new LocalClusteredQueue(office1, "node1", "sub15", im.getId(), ms, pm, true, true, (QueuedExecutor)pool.get(), null, tr); bindings[14] = office1.bindClusteredQueue("topic2", queues[14]); queues[15] = new LocalClusteredQueue(office1, "node1", "sub16", im.getId(), ms, pm, true, true, (QueuedExecutor)pool.get(), null, tr); bindings[15] = office1.bindClusteredQueue("topic2", queues[15]); SimpleReceiver[] receivers = new SimpleReceiver[16]; for (int i = 0; i < 16; i++) { receivers[i] = new SimpleReceiver("blah", SimpleReceiver.ACCEPTING); queues[i].add(receivers[i]); } //First for topic 1 Message msg1 = CoreMessageFactory.createCoreMessage(1, persistent, null);; MessageReference ref1 = ms.reference(msg1); Message msg2 = CoreMessageFactory.createCoreMessage(2, persistent, null);; MessageReference ref2 = ms.reference(msg2); Transaction tx = tr.createTransaction(); boolean routed = office1.route(ref1, "topic1", tx); assertTrue(routed); routed = office1.route(ref2, "topic1", tx); assertTrue(routed); for (int i = 0; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } tx.commit(); //Messages are sent asych so may take some finite time to arrive Thread.sleep(1000); for (int i = 0; i < 8; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertEquals(2, msgs.size()); Message msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); Message msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); receivers[i].acknowledge(msgRec1, null); receivers[i].acknowledge(msgRec2, null); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); receivers[i].clear(); } for (int i = 8; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } msg1 = CoreMessageFactory.createCoreMessage(1, persistent, null);; ref1 = ms.reference(msg1); msg2 = CoreMessageFactory.createCoreMessage(2, persistent, null);; ref2 = ms.reference(msg2); tx = tr.createTransaction(); routed = office1.route(ref1, "topic1", tx); assertTrue(routed); routed = office1.route(ref2, "topic1", tx); assertTrue(routed); //Messages are sent asych so may take some finite time to arrive Thread.sleep(1000); for (int i = 0; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } tx.rollback(); for (int i = 0; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } //Now send some non transactionally msg1 = CoreMessageFactory.createCoreMessage(1, persistent, null); ref1 = ms.reference(msg1); msg2 = CoreMessageFactory.createCoreMessage(2, persistent, null); ref2 = ms.reference(msg2); routed = office1.route(ref1, "topic1", null); assertTrue(routed); routed = office1.route(ref2, "topic1", null); assertTrue(routed); //Messages are sent asych so may take some finite time to arrive Thread.sleep(1000); //And acknowledge transactionally tx = tr.createTransaction(); for (int i = 0; i < 8; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertEquals(2, msgs.size()); Message msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); Message msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); receivers[i].acknowledge(msgRec1, tx); receivers[i].acknowledge(msgRec2, tx); msgs = queues[i].browse(); assertNotNull(msgs); assertEquals(2, msgs.size()); msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); receivers[i].clear(); } for (int i = 8; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } tx.commit(); for (int i = 0; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } // and the rollback msg1 = CoreMessageFactory.createCoreMessage(1, persistent, null);; ref1 = ms.reference(msg1); msg2 = CoreMessageFactory.createCoreMessage(2, persistent, null);; ref2 = ms.reference(msg2); routed = office1.route(ref1, "topic1", null); assertTrue(routed); routed = office1.route(ref2, "topic1", null); assertTrue(routed); Thread.sleep(1000); tx = tr.createTransaction(); for (int i = 0; i < 8; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertEquals(2, msgs.size()); Message msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); Message msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); receivers[i].acknowledge(msgRec1, tx); receivers[i].acknowledge(msgRec2, tx); msgs = queues[i].browse(); assertNotNull(msgs); assertEquals(2, msgs.size()); msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); } for (int i = 8; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } tx.rollback(); for (int i = 0; i < 8; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertEquals(2, msgs.size()); Message msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); Message msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); msgs = queues[i].browse(); assertNotNull(msgs); assertEquals(2, msgs.size()); msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); receivers[i].acknowledge(msgRec1, null); receivers[i].acknowledge(msgRec2, null); receivers[i].clear(); } for (int i = 8; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } // Now for topic 2 msg1 = CoreMessageFactory.createCoreMessage(1, persistent, null); ref1 = ms.reference(msg1); msg2 = CoreMessageFactory.createCoreMessage(2, persistent, null); ref2 = ms.reference(msg2); tx = tr.createTransaction(); routed = office1.route(ref1, "topic2", tx); assertTrue(routed); routed = office1.route(ref2, "topic2", tx); assertTrue(routed); for (int i = 0; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } tx.commit(); //Messages are sent asych so may take some finite time to arrive Thread.sleep(1000); for (int i = 0; i < 8; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } for (int i = 8; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertEquals(2, msgs.size()); Message msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); Message msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); receivers[i].acknowledge(msgRec1, null); receivers[i].acknowledge(msgRec2, null); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); receivers[i].clear(); } msg1 = CoreMessageFactory.createCoreMessage(1, persistent, null);; ref1 = ms.reference(msg1); msg2 = CoreMessageFactory.createCoreMessage(2, persistent, null);; ref2 = ms.reference(msg2); tx = tr.createTransaction(); routed = office1.route(ref1, "topic1", tx); assertTrue(routed); routed = office1.route(ref2, "topic1", tx); assertTrue(routed); for (int i = 0; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } tx.rollback(); for (int i = 0; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } //Now send some non transactionally msg1 = CoreMessageFactory.createCoreMessage(1, persistent, null); ref1 = ms.reference(msg1); msg2 = CoreMessageFactory.createCoreMessage(2, persistent, null); ref2 = ms.reference(msg2); routed = office1.route(ref1, "topic2", null); assertTrue(routed); routed = office1.route(ref2, "topic2", null); assertTrue(routed); Thread.sleep(1000); //And acknowledge transactionally tx = tr.createTransaction(); for (int i = 0; i < 8; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } for (int i = 8; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertEquals(2, msgs.size()); Message msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); Message msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); receivers[i].acknowledge(msgRec1, tx); receivers[i].acknowledge(msgRec2, tx); msgs = queues[i].browse(); assertNotNull(msgs); assertEquals(2, msgs.size()); msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); receivers[i].clear(); } tx.commit(); for (int i = 0; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } // and the rollback msg1 = CoreMessageFactory.createCoreMessage(1, persistent, null);; ref1 = ms.reference(msg1); msg2 = CoreMessageFactory.createCoreMessage(2, persistent, null);; ref2 = ms.reference(msg2); routed = office1.route(ref1, "topic2", null); assertTrue(routed); routed = office1.route(ref2, "topic2", null); assertTrue(routed); Thread.sleep(1000); tx = tr.createTransaction(); for (int i = 0; i < 8; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } for (int i = 8; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertEquals(2, msgs.size()); Message msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); Message msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); receivers[i].acknowledge(msgRec1, tx); receivers[i].acknowledge(msgRec2, tx); msgs = queues[i].browse(); assertNotNull(msgs); assertEquals(2, msgs.size()); msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); } tx.rollback(); for (int i = 0; i < 8; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); msgs = queues[i].browse(); assertNotNull(msgs); assertTrue(msgs.isEmpty()); } for (int i = 8; i < 16; i++) { List msgs = receivers[i].getMessages(); assertNotNull(msgs); assertEquals(2, msgs.size()); Message msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); Message msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); msgs = queues[i].browse(); assertNotNull(msgs); assertEquals(2, msgs.size()); msgRec1 = (Message)msgs.get(0); assertEquals(msg1.getMessageID(), msgRec1.getMessageID()); msgRec2 = (Message)msgs.get(1); assertEquals(msg2.getMessageID(), msgRec2.getMessageID()); receivers[i].acknowledge(msgRec1, null); receivers[i].acknowledge(msgRec2, null); receivers[i].clear(); } } finally { if (office1 != null) { try { office1.unbindClusteredQueue("sub7"); office1.unbindClusteredQueue("sub8"); office1.unbindClusteredQueue("sub15"); office1.unbindClusteredQueue("sub16"); } catch (Exception ignore) { ignore.printStackTrace(); } office1.stop(); } if (office2 != null) { try { office2.unbindClusteredQueue("sub5"); office2.unbindClusteredQueue("sub13"); } catch (Exception ignore) { ignore.printStackTrace(); } office2.stop(); } checkNoMessageData(); } } | 3806 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3806/f54f55cea0aabacd10797be5e0ff1d3bd3f8db88/DefaultClusteredPostOfficeTest.java/buggy/tests/src/org/jboss/test/messaging/core/plugin/postoffice/cluster/DefaultClusteredPostOfficeTest.java | [
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throw new RuntimeException( "Result already set to "+result+ ", won't replace with "+r); | return false; | public final void setResult(Object r, long ttl) { if (r == null) { r = getDefaultResult(); } Set s; synchronized (lock) { if (result != null) { if (r == TIMEOUT || result == TIMEOUT) { // okay, ignored timeout return; } throw new RuntimeException( "Result already set to "+result+ ", won't replace with "+r); } this.result = r; this.ttl = ttl; lock.notifyAll(); if (callbacks == null) { return; } s = callbacks; callbacks = null; } for (Iterator iter = s.iterator(); iter.hasNext(); ) { Callback c = (Callback) iter.next(); c.execute(this); } } | 7981 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7981/4c10453b9ea9a7f21fdd670b1ff4848b2adf96dd/Response.java/buggy/core/src/org/cougaar/core/service/wp/Response.java | [
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ProjectBrowser.TheInstance.setTarget(newOper); | ProjectBrowser.getInstance().setTarget(newOper); | public void addOperation() { Object target = getTarget(); if (target instanceof MClassifier) { MOperation newOper = UmlFactory.getFactory().getCore().buildOperation( (MClassifier) target); ProjectBrowser.TheInstance.setTarget(newOper); } } | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/1ebb17ac06205415cc8d51f57abdfb1e5ec54d76/PropPanelClassifier.java/buggy/src_new/org/argouml/uml/ui/foundation/core/PropPanelClassifier.java | [
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new String[]{"" + meta_id, "" + keywordId} ); | new String[]{"" + meta_id, "" + keywordId} ); | private void addExistingKeywordToDocument( int meta_id, String keyword ) { int keywordId = Integer.parseInt( database.sqlQueryStr( "SELECT class_id FROM classification WHERE code = ?", new String[]{ keyword } ) ); database.sqlUpdateQuery( "INSERT INTO meta_classification (meta_id, class_id) VALUES(?,?)", new String[]{"" + meta_id, "" + keywordId} ); } | 8781 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8781/ef706636437631ae134b63e6e75c73e2593037e6/DocumentMapper.java/buggy/server/src/imcode/server/document/DocumentMapper.java | [
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debug = PrefUtil.getAPIPreferenceStore(). getBoolean(IWorkbenchPreferenceConstants.SHOW_SYSTEM_JOBS); | private ProgressViewUpdater() { createUpdateJob(); collectors = new IProgressUpdateCollector[0]; ProgressManager.getInstance().addListener(this); } | 56152 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56152/5227d0f0929c20b7aa7fd58b712e727c4f08ba91/ProgressViewUpdater.java/buggy/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/progress/ProgressViewUpdater.java | [
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