rem stringlengths 1 53.3k | add stringlengths 0 80.5k | context stringlengths 6 326k | meta stringlengths 141 403 | input_ids list | attention_mask list | labels list |
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("msg.instanceof.bad.prototype", names[0], instance); | ("msg.instanceof.bad.prototype", functionName, instance); | public boolean hasInstance(Scriptable instance) { Object protoProp = ScriptableObject.getProperty(this, "prototype"); if (protoProp instanceof Scriptable && protoProp != Undefined.instance) { return ScriptRuntime.jsDelegatesTo(instance, (Scriptable)protoProp); } throw NativeGl... | 19042 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19042/e53045755f5170abf79488c129f3ab6756b813e1/NativeFunction.java/clean/src/org/mozilla/javascript/NativeFunction.java | [
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} | } | public void writeTaskLog(CmsRequestContext context, int taskid, String comment) throws CmsException { CmsDbContext dbc = m_dbContextFactory.getDbContext(context); try { m_driverManager.writeTaskLog(dbc, taskid, comment); } catch (Exception e) { dbc.report(null, null, e)... | 51784 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51784/a7ffa3c192d7068f584b0a3a844b88bdb2d3145a/CmsSecurityManager.java/buggy/src/org/opencms/db/CmsSecurityManager.java | [
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m_ClassIndex = train.classIndex(); | public void buildClassifier(Instances train) throws Exception { if (train.classAttribute().type() != Attribute.NOMINAL) { throw new Exception("Class attribute must be nominal."); } if (train.classAttribute().numValues() != 2) { throw new Exception("Only 2-class problems allowed."); } if (trai... | 6866 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6866/8542ff1ed2f4efca6f2bcefb7fdef18ad20d35a5/Logistic.java/clean/classifiers/Logistic.java | [
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ZimbraSoapContext lc = getZimbraContext(context); | ZimbraSoapContext lc = getZimbraSoapContext(context); | public Element handle(Element request, Map context) throws ServiceException { ZimbraSoapContext lc = getZimbraContext(context); // FIXME: need to check that mailbox exists Mailbox mbox = getRequestedMailbox(lc); List tags = mbox.getTagList(lc.getOperationContext()); Element response = lc.creat... | 6965 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6965/73c7a43f58826ebd459515a85e8460518f31e6cc/GetTag.java/clean/ZimbraServer/src/java/com/zimbra/cs/service/mail/GetTag.java | [
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} | } if (!movedALegion) { debugln("Ack! forced to move someone"); ArrayList allmoves = new ArrayList(); Iterator friendlyLegionIt = legions.iterator(); while (friendlyLegionIt.hasNext()) { Legion friendlyLegion = (Legion) friendlyLegionIt.next(); ArrayList moves = (ArrayList) moveMap.get(friendlyLegion); allmoves... | public void simpleMove (Game game) { Player player = game.getActivePlayer(); /** cache all places enemies can move to, for use in risk analysis */ HashMap[] enemyAttackMap = buildEnemyAttackMap(game, player); // consider mulligans // TODO: this is really stupid. do something smart here. // idea: hard cod... | 51862 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51862/db1dae80f332e8300e5d408cc3cdb3807d4ae58e/SimpleAI.java/clean/Colossus/SimpleAI.java | [
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return findSpecialTag(name,"attributeGroup",myFile.getDocument().getRootTag(),this, null); | return findSpecialTag(name,"attributeGroup",myTag,this, null); | public XmlTag findAttributeGroup(String name) { return findSpecialTag(name,"attributeGroup",myFile.getDocument().getRootTag(),this, null); } | 12814 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12814/79006a6382a22245a92d617926dfdb7c7f9c6738/XmlNSDescriptorImpl.java/buggy/source/com/intellij/xml/impl/schema/XmlNSDescriptorImpl.java | [
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SVNEvent event = new SVNEvent(source, null, SVNPathUtil.tail(path), action, SVNNodeKind.FILE, -1, null, null, null, null, lock, message); | SVNEvent event = new SVNEvent(source, null, SVNPathUtil.tail(path), action, SVNNodeKind.FILE, -1, null, null, null, null, lock, message); | public static SVNEvent createLockEvent(SVNWCAccess source, String path, SVNEventAction action, SVNLock lock, String message) { SVNEvent event = new SVNEvent(source, null, SVNPathUtil.tail(path), action, SVNNodeKind.FILE, -1, null, null, null, null, lock, message); event.setPa... | 2776 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2776/28381179e464d7990498164d52693487f9dddb79/SVNEventFactory.java/buggy/javasvn/src/org/tmatesoft/svn/core/internal/wc/SVNEventFactory.java | [
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Atom ring1Atom1 = new Atom("C"); Atom ring1Atom2 = new Atom("C"); Atom ring1Atom3 = new Atom("C"); Atom ring2Atom1 = new Atom("C"); Atom ring2Atom2 = new Atom("C"); Atom ring2Atom3 = new Atom("C"); Bond ring1Bond1 = new Bond(ring1Atom1, ring1Atom2); Bond ring1Bond2 = new Bond(ring1Atom2, ring1Atom3); Bond ring1Bond3 = ... | Atom ring1Atom1 = builder.newAtom("C"); Atom ring1Atom2 = builder.newAtom("C"); Atom ring1Atom3 = builder.newAtom("C"); Atom ring2Atom1 = builder.newAtom("C"); Atom ring2Atom2 = builder.newAtom("C"); Atom ring2Atom3 = builder.newAtom("C"); Bond ring1Bond1 = builder.newBond(ring1Atom1, ring1Atom2); Bond ring1Bond2 = bui... | public void testIsSameRing_Atom_Atom() { RingSet ringset = new RingSet(); Atom ring1Atom1 = new Atom("C"); // rather artificial molecule Atom ring1Atom2 = new Atom("C"); Atom ring1Atom3 = new Atom("C"); Atom ring2Atom1 = new Atom("C"); Atom ring2Atom2 = new Atom("C"); ... | 45254 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45254/67261c8143759a6ee4feb79dc1687d6dcfa25f40/RingSetTest.java/buggy/src/org/openscience/cdk/test/RingSetTest.java | [
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GBeanMBean resourceAdapterGBean = setUpDynamicGBean(resourceAdapterInfoFactory, resourceadapter.getConfigPropertyArray(), geronimoResourceAdapter.getResourceadapterInstance().getConfigPropertySettingArray()); | GBeanMBean resourceAdapterGBean = setUpDynamicGBean(resourceAdapterInfoFactory, resourceadapter.getConfigPropertyArray(), geronimoResourceAdapter.getResourceadapterInstance().getConfigPropertySettingArray(), cl); | void addConnectorGBeans(DeploymentContext context, XmlObject genericConnectorDocument, GerConnectorType geronimoConnector, ClassLoader cl) throws DeploymentException { //addGBeans called from here so it is included in tests. addGBeans(geronimoConnector, cl, context); ConnectorType connector = (... | 12474 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12474/b538224cda0d40aae152bf9c55cb390f70708134/RAR_1_5ConfigBuilder.java/buggy/modules/connector/src/java/org/apache/geronimo/connector/deployment/RAR_1_5ConfigBuilder.java | [
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} else if (id.startsWith("IDL:")) { | } else if (id.startsWith("IDL:")) { | static Class getClass(String id) { if (id.startsWith("RMI:")) { int endClass = id.indexOf(':', 4); if (endClass == -1) { throw new org.omg.CORBA.INV_IDENT(id); } String className = id.substring(4, endClass); if (className.equals("javax.rmi... | 12474 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12474/9d2c39c906c6955e17daf4ac239b85d4727ddc83/ValueType.java/buggy/modules/interop/src/java/org/apache/geronimo/interop/rmi/iiop/ValueType.java | [
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public void mBOOL() throws RecognitionException { int BOOL_StartIndex = input.index(); try { int type = BOOL; int start = getCharIndex(); int line = getLine(); int charPosition = getCharPositionInLine(); int channel = Token.DEFAULT_CHANNEL; ... | 6736 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6736/2c627236020a6a6e3e349b38b1010bfe64567df7/RuleParserLexer.java/clean/drools-compiler/src/main/java/org/drools/lang/RuleParserLexer.java | [
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private Rectangle getBoundingBox() { // Our PS Header has internal page orientation mode, all sizes given in portrait Dimension pageSize = PageConstants.getSize(getProperty(PAGE_SIZE)); Insets margins = getPropertyInsets(PAGE_MARGINS); boolean isPortrait = getProperty(ORIENTATION).equals... | 57341 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57341/de061d5977b00047b242b52aea5bc47538b063c5/PSGraphics2D.java/clean/freehep-graphicsio-ps/src/main/java/org/freehep/graphicsio/ps/PSGraphics2D.java | [
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performDataTypeTest(TEST_NUMERIC_MODEL, new BigDecimal("210987654321"), new BigDecimal("-2")); | final String modelXml = "<?xml version='1.0' encoding='ISO-8859-1'?>\n"+ "<database name='roundtriptest'>\n"+ " <table name='roundtrip'>\n"+ " <column name='pk' type='INTEGER' primaryKey='true' required='true'/>\n"+ " <column name='avalue' type='NUMERIC' size='12'/>\n"+ " </table>\n"+ "</database>"; performDat... | public void testNumeric() { performDataTypeTest(TEST_NUMERIC_MODEL, new BigDecimal("210987654321"), new BigDecimal("-2")); } | 1224 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1224/ac0082aeb19995adc414f46d5f9053e8ecea4193/TestDatatypes.java/buggy/src/test/org/apache/ddlutils/io/TestDatatypes.java | [
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+ " makes unresolvable reference to " + ref + " : " + defined.size()); | + " makes unresolvable reference to '" + ref + "' : " + defined.contains(ref) ); | public void visit(JavaClass obj) { compute(); ConstantPool cp = obj.getConstantPool(); Constant[] constants = cp.getConstantPool(); checkConstant: for (int i = 0; i < constants.length; i++) { Constant co = constants[i]; if (co instanceof ConstantDouble || co instanceof ConstantLong) i++; if (false && co i... | 10715 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10715/fbaf639330a33e6574463ee18d8c595bfec8195e/ResolveAllReferences.java/buggy/findbugs/src/java/edu/umd/cs/findbugs/detect/ResolveAllReferences.java | [
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IClasspathEntry entry= JavaCore.getClasspathVariable(name); | IClasspathEntry entry= JavaCore.getResolvedClasspathVariable(cpentry.getPath()); | public String getText(Object element) { if (element instanceof CPListElement) { CPListElement cpentry= (CPListElement)element; IResource resource= cpentry.getResource(); switch (cpentry.getEntryKind()) { case IClasspathEntry.CPE_LIBRARY: { IPath path= cpentry.getPath(); if (cpentry.getResource() inst... | 9698 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9698/9f7cccd5adde81caeed18d82cd2b07e2a17aee49/CPListLabelProvider.java/buggy/org.eclipse.jdt.ui/ui/org/eclipse/jdt/internal/ui/wizards/buildpaths/CPListLabelProvider.java | [
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String numRecInfo() { long elapsed = (System.currentTimeMillis() - startTime_)/1000; long total = numRecRead_+numRecWritten_+numRecSkipped_; return "R/W/S=" + numRecRead_+"/"+numRecWritten_+"/"+numRecSkipped_ + " in:" + safeDiv(numRecRead_, elapsed) + " [rec/s]" + " out:" + safeDiv(numRecWritten_, elapsed) + " [rec/s]... | String numRecInfo() { long elapsed = (System.currentTimeMillis() - startTime_) / 1000; long total = numRecRead_ + numRecWritten_ + numRecSkipped_; return "R/W/S=" + numRecRead_ + "/" + numRecWritten_ + "/" + numRecSkipped_ + " in:" + safeDiv(numRecRead_, elapsed) + " [rec/s]" + " out:" + safeDiv(numRecWritten_, elapsed... | String numRecInfo() { long elapsed = (System.currentTimeMillis() - startTime_)/1000; long total = numRecRead_+numRecWritten_+numRecSkipped_; return "R/W/S=" + numRecRead_+"/"+numRecWritten_+"/"+numRecSkipped_ + " in:" + safeDiv(numRecRead_, elapsed) + " [rec/s]" + " out:" + safeDiv(numRecWritten_, ... | 51718 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51718/e10b40e8014547113799b2653164e8c990d41209/PipeMapRed.java/buggy/src/contrib/streaming/src/java/org/apache/hadoop/streaming/PipeMapRed.java | [
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alt49=5; | alt50=5; | public ArgumentValueDescr argument_value() throws RecognitionException { ArgumentValueDescr value; Token t=null; value = null; String text = null; try { // /home/michael/projects/jboss-rules/drools-compiler/src/main/resources/org/drools/lang/drl.g:784:17... | 6736 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6736/8c3be0baa8712893e2dea6fbb679cbb7e80de372/RuleParser.java/clean/drools-compiler/src/main/java/org/drools/lang/RuleParser.java | [
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writePatternList(-1, 0, writer); | writer.writeComment("The unique patterns for codon position "+from); id += Integer.toString(from); | public void writePatternList(XMLWriter writer) { writer.writeText(""); if (alignment.getDataType() == Nucleotides.INSTANCE && codonHetero) { for (int i = 1; i <= 3; i++) { writePatternList(i, 3, writer); } } else { writePatternList(-1, 0, writer); } } | 49053 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49053/7eb182fdc6ec6132f284563d4a12000c84e4a277/BeastGenerator.java/buggy/trunk/src/dr/app/beauti/BeastGenerator.java | [
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if (typeCode == OBJ_DELTA) { | if (typeCode == OBJ_DELTA) { | private PackedObjectReader reader() throws IOException { final int typeCode; final String typeStr; ObjectId deltaBase = null; final long offset; int c; long size; int shift; c = packStream.xuint8(); typeCode = (c >> 4) & 7; size = c & 15; ... | 45532 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45532/95e2adba28c9a11f01009dd846fb7366bec613c5/PackReader.java/buggy/org.spearce.jgit/src/org/spearce/jgit/lib/PackReader.java | [
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case 43: break; | case 44: break; | public Yytoken yylex() throws java.io.IOException { int zzInput; int zzAction; // cached fields: int zzCurrentPosL; int zzMarkedPosL; int zzEndReadL = zzEndRead; char [] zzBufferL = zzBuffer; char [] zzCMapL = ZZ_CMAP; int [] zzTransL = ZZ_TRANS; int [] zzRowMapL = ZZ_ROWMAP; int [] z... | 8026 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8026/0704f93643187b0aba45fa8c09ca25a3fa9173bb/CSSTokenizerFilter.java/clean/src/freenet/clients/http/filter/CSSTokenizerFilter.java | [
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Set checkedMethods) { | Set<MethodSignature> checkedMethods) { | private boolean newExpressionMustAssignVariable(PsiExpression expression, PsiVariable field, Set checkedMethods) { final PsiNewExpression callExpression = (PsiNewExpression) expression; ... | 17306 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17306/2d46d291193579a7564649b4881c7ea8e02eda5b/InitializationReadUtils.java/clean/plugins/InspectionGadgets/src/com/siyeh/ig/psiutils/InitializationReadUtils.java | [
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PostInputStream reqContent = new PostInputStream(input, length); | public java.util.Map act (Redirector redirector, SourceResolver resolver, Map objectModel, String source, Parameters params) throws IOException {// File homedir = new File(Sys... | 45951 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45951/6999ba6da049d58d4186df6fa73c2252d2e0e58d/XopusHandlerAction.java/buggy/src/java/org/apache/lenya/cms/cocoon/acting/XopusHandlerAction.java | [
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generatedIndex.addException(exception.getAttributeValue("id"), exception.getAttributeValue("reference"), exception.getAttributeValue("realm")); | generatedIndex.addException(exception.getAttributeValue("id"), exception.getAttributeValue("reference"), exception.getAttributeValue("realm")); | public static void main(final String[] args) throws IOException, JDOMException, ClassNotFoundException { // Show usage. if (args.length != 2) { System.out.println("Usage:\nSerializableIndexCreator indexFile outputFile"); return; } // Read index file. Syste... | 1637 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1637/c2a01c88ac40e5922d9674402319433ab9ff9ee5/SerializableIndexCreator.java/buggy/moria2/modules/moria-dm/src/java/no/feide/moria/directory/index/tools/SerializableIndexCreator.java | [
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public RubyClass newSubClass(String name, RubyModule parent) { return new ArrayMetaClass(name, this, parent); | public RubyClass newSubClass(String name, SinglyLinkedList parentCRef) { return new ArrayMetaClass(name, this, parentCRef); | public RubyClass newSubClass(String name, RubyModule parent) { return new ArrayMetaClass(name, this, parent); } | 48072 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48072/a1b8fc1d456e3d5c6e01579b88773383068aa85c/ArrayMetaClass.java/buggy/src/org/jruby/runtime/builtin/meta/ArrayMetaClass.java | [
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return (TreeSelectionListener[]) getListeners(TreeSelectionListener.class); | return (TreeSelectionListener[]) getListeners(TreeSelectionListener.class); | public TreeSelectionListener[] getTreeSelectionListeners() { return (TreeSelectionListener[]) getListeners(TreeSelectionListener.class); } | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/3826e72d9ebe31a854c4d01d6c8f1ec65a8d80fe/JTree.java/clean/core/src/classpath/javax/javax/swing/JTree.java | [
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public org.quickfix.field.LegRepurchaseTerm getLegRepurchaseTerm() throws FieldNotFound { org.quickfix.field.LegRepurchaseTerm value = new org.quickfix.field.LegRepurchaseTerm(); | public quickfix.field.LegRepurchaseTerm getLegRepurchaseTerm() throws FieldNotFound { quickfix.field.LegRepurchaseTerm value = new quickfix.field.LegRepurchaseTerm(); | public org.quickfix.field.LegRepurchaseTerm getLegRepurchaseTerm() throws FieldNotFound { org.quickfix.field.LegRepurchaseTerm value = new org.quickfix.field.LegRepurchaseTerm(); getField(value); return value; } | 5926 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5926/fecc27f98261270772ff182a1d4dfd94b5daa73d/AssignmentReport.java/buggy/src/java/src/quickfix/fix44/AssignmentReport.java | [
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public TransHopMeta findTransHop(StepMeta from, StepMeta to) | public TransHopMeta findTransHop(String name) | public TransHopMeta findTransHop(StepMeta from, StepMeta to) { int i; for (i = 0; i < nrTransHops(); i++) { TransHopMeta hi = getTransHop(i); if (hi.isEnabled()) { if (hi.getFromStep() != null && hi.getToStep() != null && hi.getFromStep().equal... | 9547 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9547/09ee04adf8b99db73f2d4a5ca5719f1065f0db70/TransMeta.java/buggy/src/be/ibridge/kettle/trans/TransMeta.java | [
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if (colorsLeft.contains(colorNames[i])) | if (colorsLeft.contains(Constants.colorNames[i])) | private PickColor(JFrame parentFrame, String playerName, Set colorsLeft) { super(parentFrame, playerName + ", Pick a Color", true); color = null; setBackground(Color.lightGray); pack(); Container contentPane = getContentPane(); contentPane.setLayout(new FlowLayou... | 51862 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51862/3d0c995d677b11834bfd5b0d9ff7d5fef51d296e/PickColor.java/clean/Colossus/net/sf/colossus/client/PickColor.java | [
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throws net.sourceforge.jtds.jdbc.TdsException, java.io.IOException { int lo = ( ( int ) getByte() & 0xff ); int hi = ( ( int ) getByte() & 0xff ) << 8; | throws net.sourceforge.jtds.jdbc.TdsException, java.io.IOException { int lo = ((int) getByte() & 0xff); int hi = ((int) getByte() & 0xff) << 8; | public int getTdsShort() throws net.sourceforge.jtds.jdbc.TdsException, java.io.IOException { int lo = ( ( int ) getByte() & 0xff ); int hi = ( ( int ) getByte() & 0xff ) << 8; return lo | hi; } | 439 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/439/8552aa9a2df546b4d1977c587b04556c7b854ab4/TdsComm.java/buggy/trunk/jtds/src/main/net/sourceforge/jtds/jdbc/TdsComm.java | [
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public org.quickfix.field.LegProduct getLegProduct() throws FieldNotFound { org.quickfix.field.LegProduct value = new org.quickfix.field.LegProduct(); | public quickfix.field.LegProduct getLegProduct() throws FieldNotFound { quickfix.field.LegProduct value = new quickfix.field.LegProduct(); | public org.quickfix.field.LegProduct getLegProduct() throws FieldNotFound { org.quickfix.field.LegProduct value = new org.quickfix.field.LegProduct(); getField(value); return value; } | 8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/AllocationReport.java/clean/src/java/src/quickfix/fix44/AllocationReport.java | [
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return "'wider' vs. 'wieder' in 'spiegeln .. wider'"; | return "'wider' vs. 'wieder' in 'spiegeln ... wider'"; | public String getDescription() { return "'wider' vs. 'wieder' in 'spiegeln .. wider'"; } | 10628 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10628/f7908bf726e4486c23dc9e73f978d0e8604a84b2/WiederVsWiderRule.java/clean/trunk/JLanguageTool/src/java/de/danielnaber/languagetool/rules/de/WiederVsWiderRule.java | [
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if (Configuration.DEBUG) | Parser getParser() { log.entering(this.getClass().getName(), "getParser"); //$NON-NLS-1$ Parser result = new ClasspathToolParser(Main.LIST_CMD, true); result.setHeader(Messages.getString("ListCmd.20")); //$NON-NLS-1$ result.setFooter(Messages.getString("ListCmd.19")); //$NON-NLS-1$ OptionGroup options... | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/6e10879cd4d1df8b463898498b99e01d9ae63f24/ListCmd.java/clean/core/src/classpath/tools/gnu/classpath/tools/keytool/ListCmd.java | [
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recv.getRuntime().getCurrentContext().yield(((IRubyObject) iter.next())); | recv.getRuntime().getCurrentContext().yield(obj); | public static IRubyObject each_object(IRubyObject recv, IRubyObject[] args) { RubyModule rubyClass; if (args.length == 0) { rubyClass = recv.getRuntime().getObject(); } else { rubyClass = (RubyModule) args[0]; } int count = 0; Iterator iter = recv.getR... | 45753 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45753/448643c70dc9b78a7d89a851b9202699d07cfbb3/RubyObjectSpace.java/buggy/src/org/jruby/RubyObjectSpace.java | [
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public Collection getFinalItems() { Map symbolToGeneMap = new HashMap(); Map organismDbIdToGeneMap = new HashMap(); Set genesWithDuplicatedSymbols = new LinkedHashSet(); Set genesWithDuplicatedOrganismDbIds = new LinkedHashSet(); Iterator finalItemIter = finalItems.iterator(); ... | 29158 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/29158/31bc580cca55cf1ca86b208560d77684e4e5f280/ChadoGFF3RecordHandler.java/buggy/flymine/model/chado/src/java/org/flymine/dataconversion/ChadoGFF3RecordHandler.java | [
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public EditorDocument(EditorLayer root) { setRoot(root); _reader = createReader(); myEditorWriter = new EditorWriter(this); | public EditorDocument() { this(new EditorLayer("Root")); | public EditorDocument(EditorLayer root) { setRoot(root); _reader = createReader(); myEditorWriter = new EditorWriter(this); } | 5015 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5015/2e50a9eef7af3667f7f619208cdcd43990516eaa/EditorDocument.java/buggy/BIOSIM/src/com/traclabs/biosim/editor/base/EditorDocument.java | [
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Dimension panelSize = getSize(); BufferedImage outImage = | final Dimension panelSize = getSize(); final BufferedImage outImage = | private synchronized void loadAndCache( File imageFile ) throws IOException { // Even if caller does this, it's important that we check again, // because this method is synchronized and called from numerous // Threads. String key = imageFile.getAbsolutePath(); BufferedI... | 57504 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57504/608a7845186eaee19d103ba95951ad8a3b5dbbe7/ImagePreviewPanel.java/buggy/javaimagealbum/src/com/javaimagealbum/ImagePreviewPanel.java | [
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RubyString newStr = newString(getValue().substring(beg, end)); newStr.infectBy(this); return newStr; | return newString(getValue().substring(beg, end)).infectBy(this); | private IRubyObject substr(int beg, int len) { int strLen = getValue().length(); if (len < 0 || beg > strLen) { return getRuntime().getNil(); } if (beg < 0) { beg += strLen; if (beg < 0) { return getRuntime().getNil(); } } int end = Math.min(strLen, beg + len); RubyString newStr = newString(getValue(... | 46217 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46217/c3988bcedc9973ff7f8c24ac6423ecb89f3ada35/RubyString.java/buggy/src/org/jruby/RubyString.java | [
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imcode.server.IMCServiceInterface imc = IMCServiceRMI.getInterface(prop.getProperty("imcserver")); String imagePath = imc.getImageHome() + user.getLangPrefix() + "/107"; CalenderDbManager dbmanager = new CalenderDbManager(); int player_id; int meta_id = Integer.parseInt("" + prop.getProperty("calender_meta_id")); St... | if (action.equalsIgnoreCase("NEW")) { | public void doPost(HttpServletRequest req, HttpServletResponse res) throws ServletException, IOException { // Get info and check login HttpSession session = req.getSession(true); Properties prop = super.getSessionParams(req, res); imcode.server.User user = super.checkLogin(req, res, prop.getProperty("start_ur... | 8781 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8781/a270627916b37a677a391dd9f45c54d3d6f12503/CalenderManager.java/clean/servlets/calender/CalenderManager.java | [
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Object data; boolean finished = false; while (!finished) { try { data = context.operands.pop(); if (data instanceof PAToken) { if ( ( (PAToken) data).type == PAToken.MARK) { finished = true; } } } catch (EmptyStackException e) { throw new PainterException(e.toString()); } | Object data[]; data = context.popOperands(1); if (! (data[0] instanceof Number)) { throw new PainterException("index: wrong arguments"); } int index = ( (Number) data[0]).intValue(); try { context.operands.push(context.operands.elementAt(index)); } catch (ArrayIndexOutOfBoundsException e) { throw new PainterException(e... | public void execute(PAContext context) throws PainterException { Object data; boolean finished = false; while (!finished) { try { data = context.operands.pop(); if (data instanceof PAToken) { if ( ( (PAToken) data).type == PAToken.MARK) { ... | 3506 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3506/3cd4a973dbdca1f7072d8e189d388c5a878cc9a6/PAContext.java/clean/itext/src/com/lowagie/text/pdf/codec/postscript/PAContext.java | [
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void appendResource(String resourceName) { InputStream in = this.getClass().getClassLoader().getResourceAsStream(resourceName); if (in == null) { log.warn("resource not found:" + resourceName); return; } LineNumberReader lnr = new LineNumberReader... | 53077 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53077/48ba85e12dae361be74b9faa8225f7e118b83737/Report.java/buggy/jtidyservlet/src/java/org/w3c/tidy/servlet/reports/Report.java | [
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case 119: | public final void parenthesizedExpr() throws RecognitionException, TokenStreamException { returnAST = null; ASTPair currentAST = new ASTPair(); AST parenthesizedExpr_AST = null; AST e_AST = null; match(LPAREN); { switch ( LA(1)) { case LPAREN: case NCNAME: case XQUERY: case VERSION: case LITERAL_namesp... | 2909 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2909/d31ac0d651739cc32d55579c14a0786f6bfb4200/XPathParser2.java/clean/src/org/exist/parser/XPathParser2.java | [
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public org.quickfix.field.UnderlyingRepoCollateralSecurityType getUnderlyingRepoCollateralSecurityType() throws FieldNotFound { org.quickfix.field.UnderlyingRepoCollateralSecurityType value = new org.quickfix.field.UnderlyingRepoCollateralSecurityType(); | public quickfix.field.UnderlyingRepoCollateralSecurityType getUnderlyingRepoCollateralSecurityType() throws FieldNotFound { quickfix.field.UnderlyingRepoCollateralSecurityType value = new quickfix.field.UnderlyingRepoCollateralSecurityType(); | public org.quickfix.field.UnderlyingRepoCollateralSecurityType getUnderlyingRepoCollateralSecurityType() throws FieldNotFound { org.quickfix.field.UnderlyingRepoCollateralSecurityType value = new org.quickfix.field.UnderlyingRepoCollateralSecurityType(); getField(value); return value; } | 8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/Quote.java/clean/src/java/src/quickfix/fix44/Quote.java | [
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Document aggregatorConfig = DocumentHelper.createDocument(); Element configElement = aggregatorConfig.addElement("config"); | final Document xpthCfg = DocumentHelper.createDocument(); final Element configElement = xpthCfg.addElement("config"); | public ProcessorInput connectProcessorToHref(Node node, Processor processor, String inputName, ASTHref href) { LocationData locationData = node == null ? null : (LocationData) ((Element) node).getData(); ProcessorInput processorInput = processor.createInput(inputName); if (href instanceof ASTHr... | 10097 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10097/558be30a09b76fdcd48f89d08b1308f894e34fcb/PipelineBlock.java/buggy/src/java/org/orbeon/oxf/processor/pipeline/PipelineBlock.java | [
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webClient.getPage( URL_FIRST, SubmitMethod.POST, Collections.EMPTY_LIST); | webClient.getPage(URL_FIRST); | public void testAboutURL() throws Exception { final WebClient webClient = new WebClient(); final MockWebConnection webConnection = new MockWebConnection(webClient); final String firstContent = "<html><body><script language='JavaScript'>" + "w2=window.open(\"... | 3508 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3508/429ab9b3f74495494a904bb8f0f080fb6c368809/WindowTest.java/clean/htmlunit/src/test/java/com/gargoylesoftware/htmlunit/javascript/host/WindowTest.java | [
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Bitstream [] bitstreams = bundles[0].getBitstreams(); | Bitstream[] bitstreams = bundles[0].getBitstreams(); | private void processFileList(Context context, HttpServletRequest request, HttpServletResponse response, SubmissionInfo subInfo) throws ServletException, IOException, SQLException, AuthorizeException { String buttonPressed = UIUtil.getSubmitButton(request, "submit_next"); ... | 47292 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47292/a176d2867eb2549c8a0d804504654d2a0a52f4a7/SubmitServlet.java/clean/dspace/src/org/dspace/app/webui/servlet/SubmitServlet.java | [
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new MarginBorder(one, MapMode.DPtoLP(15), one, MapMode .DPtoLP(15) / 2)); | new MarginBorder(one, mm.DPtoLP(15), one, mm.DPtoLP(15) / 2)); | protected IFigure createFigure() { if (isResizable()) { ResizableCompartmentFigure compartmentFigure = new NestedResizableCompartmentFigure(); ConstrainedToolbarLayout layout = new ConstrainedToolbarLayout(); layout.setStretchMajorAxis(false); layout.setStretchMinorAxis(false); layout.setMinorAlignment(Cons... | 1758 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1758/adc1102179d667e4a670bfc5711892726a23a343/NestableListItemEditPart.java/buggy/org.eclipse.gmf.runtime/plugins/org.eclipse.gmf.runtime.diagram.ui/src/org/eclipse/gmf/runtime/diagram/ui/editparts/NestableListItemEditPart.java | [
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IJavaProject currentProject, IPath currentOutput, int outputTraverseMode) { | RootInfo rootInfo, OutputInfo outputInfo) { | protected boolean traverseDelta( IResourceDelta delta, int elementType, IJavaProject currentProject, IPath currentOutput, int outputTraverseMode) { IResource res = delta.getResource(); // process current delta boolean processChildren = true; if (currentProject != null || res instanceof IProject) { if... | 10698 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10698/51917a0c83743a82a23c6f16badda9326a65b40d/DeltaProcessor.java/buggy/org.eclipse.jdt.core/model/org/eclipse/jdt/internal/core/DeltaProcessor.java | [
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public void addWebinf(FileSet fs) { webInfFileSets.addElement(fs); | public void addWebinf(PrefixedFileSet fs) { fs.setPrefix("WEB-INF/"); super.addFileset(fs); | public void addWebinf(FileSet fs) { webInfFileSets.addElement(fs); } | 17033 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/17033/dd89f4f61343bf6c11cd8dc2c409204a89614b0b/War.java/buggy/src/main/org/apache/tools/ant/taskdefs/War.java | [
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return new ImageIcon(MemberIcon.class.getResource("icons/" + name + ".png")); | return new ImageIcon(MemberIcon.class.getResource(name + ".png")); | private Icon loadIcon(String name) { return new ImageIcon(MemberIcon.class.getResource("icons/" + name + ".png")); } | 13291 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13291/5c7bda37945b66e7410c0540795964eb65b10c8e/MemberIcon.java/buggy/src/org/jedit/ruby/icons/MemberIcon.java | [
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super(arguments); | super(arguments, outStream); | public TestableCommandlineParser(String[] arguments) { super(arguments); } | 50993 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50993/f321a7dc6c9f0229cc5266d9c2923a04a755be60/TestCommandlineParser.java/clean/test/org/jruby/test/TestCommandlineParser.java | [
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} else { try { fw = Integer.parseInt(fontWeight); } catch (NumberFormatException e) { | } else { try { fw = Integer.parseInt( fontWeight ); } catch ( NumberFormatException e ) { | private void updatePreview() { if (sample != null) { String fontFamily = name.getValueForName(name.getComboBoxControl( null).getText()); if (fontFamily == null) { fontFamily = "Times New Roman"; //$NON-NLS-1$ } String familyValue = (String) DesignerConstants.familyMap .get(fontFamily); if (family... | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/9a44d88745cf69dac1395f41e7c3c7bf8bdeb1e6/FontPreferencePage.java/buggy/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/internal/ui/dialogs/FontPreferencePage.java | [
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sbPrefix.append ("} /* end of ") | sbPrefix.append ("\n} /* end of ") | StringBuffer appendClassifierEnd (StringBuffer sbPrefix, MClassifier cls, boolean fPlain) { if (fPlain) { return sbPrefix.append ("}"); } else { String sClassifierKeyword; if (cls instanceof MClassImpl) sClassifierKeyw... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/bb658de6acc9b265eb8d85a0b7eebd5274159778/GeneratorJava.java/buggy/src_new/org/argouml/language/java/generator/GeneratorJava.java | [
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NativeJavaObject.initJSObject(); | if (Context.useJSObject) NativeJavaObject.initJSObject(); | public static Scriptable init(Scriptable scope) throws PropertyException { NativeJavaPackage packages = new NativeJavaPackage(""); packages.setPrototype(getObjectPrototype(scope)); packages.setParentScope(scope); // We want to get a real alias, and not a distinct JavaPackage ... | 19042 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19042/2deb34d1bc45c20256876de120e23e6f853fca7d/NativeJavaPackage.java/buggy/src/org/mozilla/javascript/NativeJavaPackage.java | [
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assertTrue(vcs.hasEntry(p("root1/dir"))); assertTrue(vcs.hasEntry(p("root1/dir/file"))); assertFalse(vcs.hasEntry(p("root2/dir"))); | assertTrue(vcs.hasEntry(p("/root1/dir"))); assertTrue(vcs.hasEntry(p("/root1/dir/file"))); assertFalse(vcs.hasEntry(p("/root2/dir"))); | public void testMovingDirectory() { vcs.createDirectory(p("root1")); vcs.createDirectory(p("root2")); vcs.createDirectory(p("root1/dir")); vcs.createFile(p("root1/dir/file"), null); vcs.apply(); vcs.move(p("root1/dir"), p("root2")); vcs.apply(); assertTrue(vcs.hasEntry(p("root2/dir"))); ass... | 56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/8a6fdbc15b3cd4aaa232cf2026aa4a60418c162a/LocalVcsBasicsTest.java/clean/LocalVcs/test/com/intellij/localvcs/LocalVcsBasicsTest.java | [
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PartListDO partList; | PartListDO partList = null; | public void setDownloadDO(DownloadDO downloadDO) { try { if (downloadDO == null) { if (partListWorkerThread != null){ partListWorkerThread.interrupt(); partListWorkerThread = null; } actualDLDateiName.setText(""); ... | 13641 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13641/a0167d08ac0015d50d3daf6af06587d16846db34/DownloadDOOverviewPanel.java/clean/AJClientGUI/src/de/applejuicenet/client/gui/DownloadDOOverviewPanel.java | [
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TableItem[] items = fFeatureTable.getTable().getItems(); | private void handleRemoveAll() { TableItem[] items = fFeatureTable.getTable().getItems(); IProduct product = getProduct(); for (int i = 0; i < items.length; i++) { product.removeFeature((IProductFeature)items[i].getData()); } } | 8783 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8783/0922672dba6c85780b9886149844f0cebf366cc0/FeatureSection.java/buggy/ui/org.eclipse.pde.ui/src/org/eclipse/pde/internal/ui/editor/product/FeatureSection.java | [
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return checkClass(clazz, context); | if (clazz!=null) return checkClass(clazz, context); } if (type!=null) { final String presentableText = type.getPresentableText(); boolean result = delegate.doMatch(presentableText,context); if (!result && type instanceof PsiArrayType && ((PsiArrayType)type).getComponentType() instanceof PsiClassType) { PsiClass clazz... | private boolean doMatchWithTheType(final PsiType type, MatchContext context) { if (type instanceof PsiClassType) { PsiClass clazz = ((PsiClassType)type).resolve(); return checkClass(clazz, context); } else { if (type!=null) { return delegate.doMatch(type.getPresentableText(),context); ... | 56627 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56627/646e21c9f1e2a86b317e61d9c8c4112f91211a8e/ExprTypePredicate.java/clean/plugins/structuralsearch/source/com/intellij/structuralsearch/impl/matcher/predicates/ExprTypePredicate.java | [
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MakeMessages.getString("GCCScannerConfigUtil.Error_Message"), e)); | MakeMessages.getString("DiscoveredPathManager.File_Error_Message"), e)); | private void loadDiscoveredScannerInfoFromState(IProject project, LinkedHashMap includes, LinkedHashMap symbols) throws CoreException { // Save the document IPath path = MakeCorePlugin.getWorkingDirectory(); path = path.append(project.getName() + ".sc"); //$NON-NLS-1$ if (path.toFile().exists()) { try { Fil... | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/e5c605c11d12e06ca6008ccaf7fb505ea2b10fa8/DiscoveredPathManager.java/buggy/build/org.eclipse.cdt.make.core/src/org/eclipse/cdt/make/internal/core/scannerconfig/DiscoveredPathManager.java | [
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IRubyObject separatorObject = getRuntime().getGlobalVariables().get("$,"); RubyString separator; if (separatorObject.isNil()) { separator = getRuntime().newString(""); } else { separator = RubyString.stringValue(separatorObject); | if(!getRuntime().registerInspecting(this)) { return getRuntime().newString("[...]"); | public IRubyObject to_s() { IRubyObject separatorObject = getRuntime().getGlobalVariables().get("$,"); RubyString separator; if (separatorObject.isNil()) { separator = getRuntime().newString(""); } else { separator = RubyString.stringValue(separatorObject); }... | 47273 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47273/c41f74da90a0fae6fd661222d04c6b602b3bc6ec/RubyArray.java/clean/src/org/jruby/RubyArray.java | [
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Messages.setPrimaryResource("net.sf.statsvn.statcvs"); SvnConfigurationOptions.getTaskLogger().log(Messages.getString("PROJECT_NAME") + Messages.NL); if (args.length == 0) { printProperUsageAndExit(); } if (args.length == 1) { final String arg = args[0].toLowerCase(Locale.getDefault()); if (arg.equals("-h") || arg.eq... | init(); verifyArguments(args); generate(); | public static void main(final String[] args) { Messages.setPrimaryResource("net.sf.statsvn.statcvs"); // primary is statcvs.properties in net.sf.statsvn SvnConfigurationOptions.getTaskLogger().log(Messages.getString("PROJECT_NAME") + Messages.NL); if (args.length == 0) { printProperUsageAndExit(); } if (args.... | 48585 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/48585/c1c75132886c7887973ec2afecb94c7120ec698a/Main.java/clean/statsvn/src/net/sf/statsvn/Main.java | [
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} | } | public TreeMap getCertificateProfiles(Admin admin) { TreeMap returnval = new TreeMap(); Collection result = null; try { result = certprofilehome.findAll(); if (result.size() > 0) { returnval = new TreeMap(); Iterator i = result.iterator(); ... | 4109 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4109/31d6aba7523c1171d3298c2d2f27b963fa299bfc/LocalCertificateStoreSessionBean.java/clean/src/java/se/anatom/ejbca/ca/store/LocalCertificateStoreSessionBean.java | [
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public org.quickfix.field.AllowableOneSidednessPct getAllowableOneSidednessPct() throws FieldNotFound { org.quickfix.field.AllowableOneSidednessPct value = new org.quickfix.field.AllowableOneSidednessPct(); | public quickfix.field.AllowableOneSidednessPct getAllowableOneSidednessPct() throws FieldNotFound { quickfix.field.AllowableOneSidednessPct value = new quickfix.field.AllowableOneSidednessPct(); | public org.quickfix.field.AllowableOneSidednessPct getAllowableOneSidednessPct() throws FieldNotFound { org.quickfix.field.AllowableOneSidednessPct value = new org.quickfix.field.AllowableOneSidednessPct(); getField(value); return value; } | 8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/NewOrderList.java/clean/src/java/src/quickfix/fix44/NewOrderList.java | [
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public void setConfig(ConfigContext ctx, ConfigElement elt) { if ( elt.getDefinition().getToken().equals("position_transform_filter") ) { mContext = ctx; mElement = elt; PropertyDefinition prop_def = mElement.getDefinition().getPropertyDefinition("device_units"); ... | 7933 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7933/464c2d31d6ece4aee56742be40bc70c603b9a8a2/TransmitterTransformPanel.java/clean/modules/vrjuggler/vrjconfig/commoneditors/org/vrjuggler/vrjconfig/commoneditors/TransmitterTransformPanel.java | [
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super(arguments, outStream); } protected void systemExit() { throw new IllegalStateException("Real CommandlineParser would perform " + "System.exit() because of a command line option error."); | super(new Main(System.in, out, err), arguments); | public void testParsingWithDashDash() { class TestableCommandlineParser extends CommandlineParser { public TestableCommandlineParser(String[] arguments) { super(arguments, outStream); } protected void systemExit() { throw new IllegalStateException("Real Commandlin... | 47134 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47134/b4a189a27604d62c317938f16a124fb9dab1e94a/TestCommandlineParser.java/clean/test/org/jruby/test/TestCommandlineParser.java | [
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Set pks = PrimaryKeyUtil.getPrimaryKeyFields(cld.getModel(), | Set pks = PrimaryKeyUtil.getPrimaryKeyFields(fd.getClassDescriptor().getModel(), | public Map getKeyAttributes() throws Exception { if (keyAttributes == null) { keyAttributes = new HashMap(); Set pks = PrimaryKeyUtil.getPrimaryKeyFields(cld.getModel(), proxy.getObject().getClass()); for (Iterator i = p... | 7196 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7196/20ded25018065120134a825d92e4884635a9d50a/DisplayReference.java/clean/intermine/web/main/src/org/intermine/web/results/DisplayReference.java | [
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return b0.compareTo(b1) > 0; | return v0 > v1; | public Calc compileCall(FunCall call, ExpCompiler compiler) { final StringCalc calc0 = compiler.compileString(call.getArg(0)); final StringCalc calc1 = compiler.compileString(call.getArg(1)); return new AbstractBooleanCalc(call, new Calc[] {calc0, calc1}) { ... | 4891 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4891/5aca340e1cdbb6179077d96383341db48f0997be/BuiltinFunTable.java/buggy/src/main/mondrian/olap/fun/BuiltinFunTable.java | [
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return (node != null) && (node.getLabel(getLanguage()) != null); | exists = (node != null) && (node.getLabel(getLanguage()) != null); | public boolean exists() throws DocumentException { SiteTree sitetree; try { sitetree = getPublication().getSiteTree(getArea()); SiteTreeNode node = sitetree.getNode(getId()); return (node != null) && (node.getLabel(getLanguage()) != null); } catch (SiteTreeExcep... | 45951 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45951/7f8f3bf99e36e034f17d4fd6d23e2c7c51b233a6/DefaultDocument.java/clean/src/java/org/apache/lenya/cms/publication/DefaultDocument.java | [
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Xpp3Dom testResources = dom.getChild( "sources" ); | Xpp3Dom testResources = dom.getChild( "testResources" ); | public ArchetypeDescriptor build( Reader reader ) throws Exception { ArchetypeDescriptor descriptor = new ArchetypeDescriptor(); Xpp3Dom dom = Xpp3DomBuilder.build( reader ); descriptor.setId( dom.getChild( "id" ).getValue() ); Xpp3Dom sources = dom.getChild( "sources" ); ... | 47050 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47050/244f6070e8f4a4ec0a89899b97e5a47b5a0eee3e/ArchetypeDescriptorBuilder.java/buggy/maven-archetype/maven-archetype-core/src/main/java/org/apache/maven/archetype/descriptor/ArchetypeDescriptorBuilder.java | [
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visit_ifxx(JvmType.REFERENCE, address, X86Constants.JNE); } | visit_ifxx(JvmType.REFERENCE, address, X86Constants.JNE); } | public final void visit_ifnonnull(int address) { visit_ifxx(JvmType.REFERENCE, address, X86Constants.JNE); } | 1056 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1056/4c9e1b93fdcd3878abf615621ec6a36bf839ab10/X86BytecodeVisitor.java/buggy/core/src/core/org/jnode/vm/x86/compiler/l1a/X86BytecodeVisitor.java | [
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dbflags = xdr.xdrDecodeInt(); | public void xdrDecode(XdrDecodingStream xdr) throws OncRpcException, IOException { status = xdr.xdrDecodeInt(); dbcl_id = xdr.xdrDecodeInt(); type = xdr.xdrDecodeInt(); dbflags = xdr.xdrDecodeInt(); lorder = xdr.xdrDecodeInt(); } | 2921 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2921/d03f220fde879509cab2ac1c73b71b7efb52b737/__db_open_reply.java/clean/db/rpc_server/java/gen/__db_open_reply.java | [
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isDragging = false; | public void mousePressed(MouseEvent event) { // Check to see that the slider is enabled before proceeeding. if (!slider.isEnabled()) return; // Get mouse x, y positions. currentMouseX = event.getX(); currentMouseY = event.getY(); // If the slider has {@link #setFocusEnabled} true then // request ... | 13273 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13273/1c6472710140ce7700bb1cb3c30b584ae3057a53/OneKnobSliderUI.java/clean/SRC/org/openmicroscopy/shoola/util/ui/slider/OneKnobSliderUI.java | [
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createChannelList(); DataService.getInstance().subscribedChannelsChanged(); mProgramTableModel.setShownChannels(ChannelList.getSubscribedChannels()); mDefaultToolBar.updateChannelChooser(); | onSubscribedChannelsChanged(); | public void showSettingsDialog() { SettingsDialog dlg = new SettingsDialog(this); dlg.centerAndShow(); if (Settings.settingHasChanged(new String[]{"font.programtitle","font.programinfo","font.programtime","font.channelname","usedefaultfonts"})) { util.ui.ProgramPanel.updateFonts(); ... | 9266 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9266/f717668ba6c889d9c3d03a8bd14e4f72867eff11/MainFrame.java/clean/tvbrowser/src/tvbrowser/ui/mainframe/MainFrame.java | [
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} | } else { addSource(); } | public void connectGraph() { if (ccStyleInit) { if (outputType != null) { output = new Channel(outputType, pushAmount); } if (inputType != null) { if (peekAmount == -1) peekAmount = popAmount; ... | 5955 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5955/07b4d082fc19f84d45b15d0983d25116e2fec607/Filter.java/buggy/streams/src/streamit/library/Filter.java | [
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( this, contentHandler, response, isPortlet, haveScriptAncestor ); | ( this, contentHandler, response, isPortlet, scriptDepth ); | private State handleForm ( final String ns, final String lnam, final String qnam, final Attributes atts ) throws SAXException { final State ret; if ( "form".equals( lnam ) ) { final AttributesImpl newAtts = XMLUtils.getAttribsFromDefaultNamespace( atts ); ... | 51410 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51410/f2f1624fa441b872f82bafeeaf06211c19ccd097/XHTMLRewrite.java/buggy/src/java/org/orbeon/oxf/processor/converter/XHTMLRewrite.java | [
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private void updateModule(IProject project) { IClasspathContainer container = getWebAppLibrariesContainer(project); if (container != null) { ((FlexibleProjectContainer) container).refresh(); } IProject[] earProjects = J2EEProjectUtilities.getReferencingEARProjects(project); if (earProjects.length == 0) { removeContaine... | private void updateModule(final IProject project) { final IWorkspaceRunnable workspaceRunnable = new IWorkspaceRunnable() { public void run(IProgressMonitor monitor) { IClasspathContainer container = getWebAppLibrariesContainer(project); if (container != null) { ((FlexibleProjectContainer) container).refresh(); } IProj... | private void updateModule(IProject project) { IClasspathContainer container = getWebAppLibrariesContainer(project); if (container != null) { ((FlexibleProjectContainer) container).refresh(); } IProject[] earProjects = J2EEProjectUtilities.getReferencingEARProjects(project); if (earProjects.length == 0) { remo... | 8196 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8196/b15e3b450868f44220bf4cca43e115caad4fd26c/J2EEComponentClasspathUpdater.java/clean/plugins/org.eclipse.jst.j2ee/common/org/eclipse/jst/j2ee/internal/common/classpath/J2EEComponentClasspathUpdater.java | [
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public void set(org.quickfix.field.DistribPaymentMethod value) | public void set(quickfix.field.DistribPaymentMethod value) | public void set(org.quickfix.field.DistribPaymentMethod value) { setField(value); } | 8803 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/8803/fecc27f98261270772ff182a1d4dfd94b5daa73d/RegistrationInstructions.java/buggy/src/java/src/quickfix/fix44/RegistrationInstructions.java | [
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case CONSTRUCTOR_ID: | case Id_constructor: | public Object execMethod (int methodId, IdFunction f, Context cx, Scriptable scope, Scriptable thisObj, Object[] args) throws JavaScriptException { switch (methodId) { case CONSTRUCTOR_ID: return jsConstructor(args, thisObj == null); case Id_toString: ... | 12376 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12376/b6331020dcf96bb85dae57ee2a2ce947b6b0477a/NativeBoolean.java/clean/js/rhino/org/mozilla/javascript/NativeBoolean.java | [
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ParameterBinding rb = getBinding(binding, operationName, resultPartName, com.sun.xml.ws.model.Mode.OUT); | ParameterBinding rb = getBinding(binding, operationName, resultPartName, false, com.sun.xml.ws.model.Mode.OUT); | protected void processRpcMethod(JavaMethod javaMethod, String methodName, WebMethod webMethod, String operationName, Method method, WebService webService) { boolean isOneway = method.isAnnotationPresent(Oneway.class); QName reqElementName = new QName(targetNamespace, operationName); QNam... | 9667 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/9667/6200604565355885ba65f291977a296dc68e9045/RuntimeModeler.java/buggy/jaxws-ri/rt/src/com/sun/xml/ws/modeler/RuntimeModeler.java | [
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myCurrentDirectory = new SVNDirectoryInfo(myCurrentDirectory, path, false); | myCurrentDirectory = new SVNDirectoryInfo(myCurrentDirectory, path); | public void openDir(String path, long revision) throws SVNException { DebugLog.log("open dir"); myCurrentDirectory = new SVNDirectoryInfo(myCurrentDirectory, path, false); myCurrentDirectory.myBaseProperties = new HashMap(); myRepos.getDir(path, myRevision, myCurrentDirectory.myBasePrope... | 2776 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2776/6c2a9b21ad94c8ea1ae6d43c84b3c1225fe4e460/SVNRemoteDiffEditor.java/clean/javasvn/src/org/tmatesoft/svn/core/internal/wc/SVNRemoteDiffEditor.java | [
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following.push(FOLLOW_predicate_in_constraints1654); | following.push(FOLLOW_predicate_in_constraints1658); | public List constraints() throws RecognitionException { List constraints; constraints = new ArrayList(); try { // C:\Projects\jboss-rules-new\drools-compiler\src\main\resources\org\drools\lang\drl.g:668:17: ( opt_eol ( constraint[constraints] | predicate[constra... | 5490 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5490/7f81b86a0f548bd02b09afc74b46454cdf158154/RuleParser.java/buggy/drools-compiler/src/main/java/org/drools/lang/RuleParser.java | [
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public Identity(String name, Map<String, Object> attrs) { super(attrs, null); mName = name; | public Identity(String name, String id, Map<String, Object> attrs) { super(name, id, attrs, null); | public Identity(String name, Map<String, Object> attrs) { super(attrs, null); mName = name; } | 6965 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6965/ccffcc86bc776010089ae5cee350f389fe08da26/Identity.java/clean/ZimbraServer/src/java/com/zimbra/cs/account/Identity.java | [
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borderCssStyle.setAttribute("width", "expression((document.getElementById('" + elementId + "').clientWidth-" + (borderHorizontalPixels) + ")+'px')"); | borderCssStyle.setAttribute("width", "expression((document.getElementById('" + elementId + "').clientWidth-" + (borderHorizontalPixels) + ")+'px')"); | private void renderBorder(RenderContext rc, Element windowDivElement, WindowPane windowPane) { FillImageBorder border = (FillImageBorder) windowPane.getRenderProperty(WindowPane.PROPERTY_BORDER, DEFAULT_BORDER); Color borderColor = border.getColor(); Insets borderInsets = border.getBorderInsets... | 45635 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45635/0e16a2d76781ba8685883747d0d8f1c409e05d2f/WindowPanePeer.java/clean/src/webcontainer/java/nextapp/echo2/webcontainer/syncpeer/WindowPanePeer.java | [
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throw new MojoExecutionException( "This project is a snapshot (" + project.getVersion() + "). It appears that the release version has not been committed." ); | parent.setVersion( incrementedVersion ); | private void transformPomToSnapshotVersionPom( MavenProject project ) throws MojoExecutionException { if ( !getReleaseProgress().verifyCheckpoint( ReleaseProgressTracker.CP_POM_TRANSORMED_FOR_DEVELOPMENT ) ) { if ( isSnapshot( project.getVersion() ) ) { t... | 51807 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51807/625596d32f1138e016cf983748dd893bd640133a/PrepareReleaseMojo.java/clean/maven-release-plugin/src/main/java/org/apache/maven/plugins/release/PrepareReleaseMojo.java | [
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JComponent toolbar = ActionManager.getInstance().createActionToolbar(ActionPlaces.FILEHISTORY_VIEW_TOOLBAR, group, true).getComponent(); | JComponent toolbar = ActionManager.getInstance().createActionToolbar(ActionPlaces.FILEHISTORY_VIEW_TOOLBAR, group, true).getComponent(); | public void showActiveHint(Range range, final Editor editor, Point point) { DefaultActionGroup group = new DefaultActionGroup(); final AnAction globalShowNextAction = ActionManager.getInstance().getAction("VcsShowNextChangeMarker"); final AnAction globalShowPrevAction = ActionManager.getInstance().getAction(... | 56598 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56598/a7795a37f1c8eebeea615883fffc7b0f9c34be31/LineStatusTracker.java/clean/source/com/intellij/openapi/vcs/ex/LineStatusTracker.java | [
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public void parameterDeclarationList() throws RecognitionException { try { // /Users/bob/Documents/workspace/jbossrules/drools-compiler/src/main/java/org/drools/semantics/java/parser/java.g:303:17: ( ( parameterDeclaration ( COMMA parameterDeclaration )* )? ) // /Users/bob/Documents/... | 31577 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/31577/024138fd0e08f5f4cd91a30959fe962d30fec435/JavaParser.java/clean/drools-compiler/src/main/java/org/drools/semantics/java/parser/JavaParser.java | [
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cNode.setForceCull(useModel); cNode2.setForceCull(!useModel); | cNode.setCullMode(useModel ? Spatial.CULL_ALWAYS : Spatial.CULL_DYNAMIC); cNode2.setCullMode(!useModel ? Spatial.CULL_ALWAYS : Spatial.CULL_DYNAMIC); | protected void simpleUpdate() { if (System.currentTimeMillis() - lastPress > 100) { if (KeyBindingManager .getKeyBindingManager() .isValidCommand("detail_down")) { if (useModel) cNode2.setTargetRecord( (cNode2.getTargetRecord()) + 10); else cNode.setTargetReco... | 19503 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19503/4b3ef3571d0832ec40dac8b87005b4342fee8477/TestClodMesh.java/buggy/src/jmetest/renderer/TestClodMesh.java | [
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Object[] errArgs = { name, clazz.getName() }; throw new PropertyException( Context.getMessage("msg.no.overload", errArgs)); | throw PropertyException.withMessage2 ("msg.no.overload", name, clazz.getName()); | public void defineFunctionProperties(String[] names, Class clazz, int attributes) throws PropertyException { for (int i=0; i < names.length; i++) { String name = names[i]; Method[] m = FunctionObject.findMethods(clazz, name); ... | 12376 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12376/e737c6d867e82d4ba7fd00e7e388c9c8da824ff0/ScriptableObject.java/buggy/js/rhino/src/org/mozilla/javascript/ScriptableObject.java | [
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return _doctypePublic; | return _doctypePublic; | public String getDoctypePublic() { return _doctypePublic; } | 1831 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1831/af047e33ee4283cd437ffa6760ccff3d3d2bf9ea/OutputFormat.java/buggy/src/org/apache/xml/serialize/OutputFormat.java | [
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public void onSuccess(FetchResult result, ClientGetter state) { // TODO ensure it works if(!state.getURI().equals(revocationURI)){ System.out.println("Found "+availableVersion); Logger.normal(this, "Found a new version! (" + availableVersion + ", setting up a new UpdatedVersionAviableUserAlert"); alert.set(ava... | 50915 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50915/d296236f0c3888b3327dcc9ff86ef0475d1d33dd/NodeUpdater.java/buggy/src/freenet/node/updater/NodeUpdater.java | [
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DisplayEditor display_editor = new DisplayEditor(); display_editor.setContext(context); | SimDisplayEditor display_editor = new SimDisplayEditor(); | public void actionPerformed(ActionEvent evt) { ControlPanel control = (ControlPanel)evt.getSource(); Object value = control.getModel().getElementAt(evt.getID()); String item = (String)value; if (item.equals("D e v i c e s")) { showDev... | 49828 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49828/562266849c8e27d3bda062d7067b73f0d9662a33/ControlPanelView.java/buggy/modules/vrjuggler/vrjconfig/org/vrjuggler/vrjconfig/ControlPanelView.java | [
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declarator.getNameStartOffset(), declarator.getNameEndOffset(), declarator.getConstructorExpression()); | getStartingLine(), declarator.getNameStartOffset(), declarator.getNameEndOffset(), declarator.getNameLine(), declarator.getConstructorExpression()); | private IASTVariable createVariableASTNode(Declarator declarator, boolean nested ) throws ASTSemanticException { try { return astFactory.createVariable( scope, nested ? declarator.getOwnedDeclarator().getName() : declarator.getName(), isAuto(), ... | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/a38f5c4f0dd1208b4df07f8a318b103677fbf77a/DeclarationWrapper.java/buggy/core/org.eclipse.cdt.core/parser/org/eclipse/cdt/internal/core/parser/DeclarationWrapper.java | [
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public Renderer3D(Renderer3DModel r3dm) { this.r3dm = r3dm; | public Renderer3D() { logger = new org.openscience.cdk.tools.LoggingTool(this.getClass().getName()); r3dm = new Renderer3DModel(); | public Renderer3D(Renderer3DModel r3dm) { this.r3dm = r3dm; } | 1306 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1306/5722015c3abb7619509c0ce87eee2db9ebb054f4/Renderer3D.java/buggy/org/openscience/cdk/renderer/Renderer3D.java | [
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{ | { log.info("Running test Queue19"); runJob(createDefaultDrainJob(queueName)); warmupDestination(queueName, standardMessageSize, false, DeliveryMode.NON_PERSISTENT, Session.AUTO_ACKNOWLEDGE); FillJob fillJob = createDefaultFillJob(queueName, numMessages); fillJob.setDeliveryMode(DeliveryMode.NON_PERSISTENT); fillJob... | public void testQueue19() { //TODO No-local perf test } | 3806 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3806/96f752d06dba37742f7716ee54f31f1982df763e/PerfRunner.java/clean/tests/src/org/jboss/test/messaging/jms/perf/PerfRunner.java | [
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