rem stringlengths 1 53.3k | add stringlengths 0 80.5k | context stringlengths 6 326k | meta stringlengths 141 403 | input_ids list | attention_mask list | labels list |
|---|---|---|---|---|---|---|
registerFunctions("g", getFunctions()); | registerFunctions("", PrimitiveFunctions.class); registerFunctions(GENESIS_FUNCTIONS_NS, getFunctions()); | protected ELScriptContext(Object root, ExpressionEvaluator evaluator) { this.evaluator = evaluator; variables.put("form", root); registerFunctions("", Functions.class); registerFunctions("g", getFunctions()); } | 4173 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4173/7d641649383cd74780e1acc9278d113b3412b132/ELScriptContext.java/clean/genesis/modules/client/src/net/java/dev/genesis/script/el/ELScriptContext.java | [
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return null; | throw new UnsupportedOperationException(); | public WellKnownTimeZone getTimeZoneById(String tzId) throws ServiceException { // TODO Auto-generated method stub return null; } | 6965 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6965/8b2329a0f119117b07dfcc6de696a1f67f2c78e9/SoapProvisioning.java/buggy/ZimbraServer/src/java/com/zimbra/cs/account/soap/SoapProvisioning.java | [
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throw new UnsupportedOperationException("Method not supported by implementation"); | return Collections.EMPTY_MAP; | public Map getBeansOfType(Class type) throws BeansException { throw new UnsupportedOperationException("Method not supported by implementation"); } | 50129 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50129/4dd32b01c0729bd786d2d753318d8d04d7948418/MockApplicationContext.java/buggy/test/commons/org/codehaus/groovy/grails/MockApplicationContext.java | [
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{ out.println("\t\t\t\tcdata = _parser.getText();"); } | { out.println("\t\t\t\tcdata = _parser.getText();"); } | public void writeJavaGetCDataContent(PrintWriter out) { out.println("\t\t\t\tcdata = _parser.getText();"); } | 51263 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51263/b5b5168edc3af09cb74945a80b0c36e6630ed502/MetaGenerator.java/clean/src/main/mondrian/xom/MetaGenerator.java | [
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public static SnmpWalker createWalker(SnmpAgentConfig agentConfig, String name, CollectionTracker tracker) { return getStrategy().createWalker(agentConfig, name, createTooBigTracker(agentConfig, tracker)); | public static SnmpWalker createWalker(SnmpAgentConfig agentConfig, String name, CollectionTracker[] trackers) { return getStrategy().createWalker(agentConfig, name, createTooBigTracker(agentConfig, trackers)); | public static SnmpWalker createWalker(SnmpAgentConfig agentConfig, String name, CollectionTracker tracker) { return getStrategy().createWalker(agentConfig, name, createTooBigTracker(agentConfig, tracker)); } | 47678 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47678/539c22ef488bf686089f0f9bba3695e1ee959078/SnmpUtils.java/buggy/opennms-snmp/opennms-snmp-api/src/main/java/org/opennms/netmgt/snmp/SnmpUtils.java | [
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AST tmp2383_AST_in = (AST)_t; | AST tmp2385_AST_in = (AST)_t; | public final void sql_comp_query(AST _t) throws RecognitionException { AST sql_comp_query_AST_in = (_t == ASTNULL) ? null : (AST)_t; AST __t2506 = _t; AST tmp2380_AST_in = (AST)_t; match(_t,Sql_comp_query); _t = _t.getFirstChild(); { if (_t==null) _t=ASTNULL; switch ( _t.getType()) { case ANY: { AST tm... | 13952 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13952/f492fd11e745beb562b4e209643ba003aa8a6271/TreeParser01.java/clean/trunk/org.prorefactor.core/src/org/prorefactor/treeparser01/TreeParser01.java | [
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dataSet = new JDBCCategoryDataset(conn, chart.getJdbcDataSet().getSql()); | dataSet = new JDBCCategoryDataset(conn, chartConfig.getJdbcDataSet().getSql()); | public static JFreeChart getBarChart(String chartName) throws MarshalException, ValidationException, IOException, SQLException { BarChart chart = null; Connection conn = null; CategoryDataset dataSet = null; chart = getBarChartConfigByName(chartName); conn = DatabaseConnectionFact... | 47678 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47678/e7715c9c76a90c6265fa2b25cd514bcb3e17b59c/ChartUtils.java/buggy/src/services/org/opennms/netmgt/charts/ChartUtils.java | [
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{ if (view == null) throw new NullPointerException("No view."); this.view = view; createActions(); attachListeners(); } | { if (view == null) throw new NullPointerException("No view."); this.view = view; createActions(); attachListeners(); } | void initialize(AnnotatorView view) { if (view == null) throw new NullPointerException("No view."); this.view = view; createActions(); attachListeners(); } | 13273 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/13273/464efde90db6bc5095c0a7e5952f51ad0f37ca86/AnnotatorControl.java/buggy/SRC/org/openmicroscopy/shoola/agents/util/annotator/view/AnnotatorControl.java | [
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onFailure(new InserterException(InserterException.INTERNAL_ERROR, "Did not expect to get metadata for metadata inserter", null), state); | public void onMetadata(Metadata meta, ClientPutState state) { if(finished) return; if(state == metadataPutter) { Logger.error(this, "Got metadata for metadata"); // FIXME kill? } else if(state != sfi) { Logger.error(this, "Got unknown metadata"); // FIXME kill? } if(reportMetadataOnly) { cb.o... | 45341 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45341/ef788311cb05dcb7cfb25e8730cf1116e0107574/SingleFileInserter.java/buggy/src/freenet/client/async/SingleFileInserter.java | [
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public final int hashCode() { return namespaceURI.hashCode() ^ localPart.hashCode(); | public int hashCode() { int result; result = namespaceURI.hashCode(); result = 29 * result + localPart.hashCode(); return result; | public final int hashCode() { return namespaceURI.hashCode() ^ localPart.hashCode(); } | 6462 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6462/4ef6328facf58c73897cfdfdcab277b98ab67825/QName.java/clean/src/main/groovy/xml/QName.java | [
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public Object clone() { /* RuntimeException e = new RuntimeException(); e.printStackTrace(); */ // Shallow clone PropertyGroupSchedule schedule = new PropertyGroupSchedule(this); schedule.lockPGs(); return schedule; } | 7981 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7981/2386c7862747e16d8ca30e91fb5ca94ae411b1ee/PropertyGroupSchedule.java/clean/core/src/org/cougaar/planning/ldm/asset/PropertyGroupSchedule.java | [
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LogService.log(LogService.DEBUG, "RDBMUserLayoutStore::setUserLayout(): " + Insert); | LogService.log(LogService.DEBUG, "RDBMUserLayoutStore::getUserLayout(): " + Insert); | public Document getUserLayout (IPerson person, UserProfile profile) throws Exception { int userId = person.getID(); int realUserId = userId; ResultSet rs; Connection con = RDBMServices.getConnection(); RDBMServices.setAutoCommit(con, false); // May speed things up, can't hurt try { Doc... | 24959 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/24959/4527a20fd7a468af6fc839c07129679e1de8693e/RDBMUserLayoutStore.java/buggy/source/org/jasig/portal/RDBMUserLayoutStore.java | [
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node.removeARKFetcher(identity,this); isFetching = false; | synchronized(this){ node.removeARKFetcher(identity,this); isFetching = false; } | public void onSuccess(FetchResult result, ClientGetter state) { Logger.minor(this, "Fetched ARK for "+peer, new Exception("debug")); // Fetcher context specifies an upper bound on size. backoff = MIN_BACKOFF; if(isFetching) { node.removeARKFetcher(identity,this); isFetching = false; } ArrayBucket bucket = (A... | 46035 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46035/946d621b138f491e00f9e5389f50568a303aaa69/ARKFetcher.java/buggy/src/freenet/node/ARKFetcher.java | [
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securityDomain, true, false); | securityDomain, true, null); | public final Function compileFunction(Scriptable scope, String source, String sourceName, int lineno, Object securityDomain) { try { return (Function) compile(scope, null, source, sourceName, lineno, ... | 51996 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51996/31ff23cd2e6b5190dbe92f81b7d5dc732adb75d6/Context.java/buggy/js/rhino/src/org/mozilla/javascript/Context.java | [
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return new DefaultHTTPConnection(location, repository); | return new DefaultHTTPConnection(repository); | public IHTTPConnection createHTTPConnection(SVNURL location, SVNRepository repository) { try { Class httpClientClass = getClass().getClassLoader().loadClass(HTTP_CLIENT_CLASS_NAME); if (httpClientClass != null && HTTP_CLIENT_JAKARTA.equalsIgnoreCase(System.getProperty(HT... | 2776 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2776/f1ee3a99fba995e9050cc58f5e26f058076e96ed/IHTTPConnectionFactory.java/clean/javasvn/src/org/tmatesoft/svn/core/internal/io/dav/IHTTPConnectionFactory.java | [
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resetDict(0, context().session().sessionID() + context().contextID()); | currentStage = 0; resetDict(); | public void takeValuesFromRequest(WORequest aRequest, WOContext aContext) { resetDict(0, context().session().sessionID() + context().contextID()); super.takeValuesFromRequest(aRequest,aContext); } | 46145 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46145/38786e0af1c60c3e71cff6c2482d0e58bed49af1/ERXOncePerRequestConditional.java/clean/Common/Frameworks/ERExtensions/Sources/er/extensions/ERXOncePerRequestConditional.java | [
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public boolean moveCursor(MouseEvent e, int pos) { if (!oia.isKeyBoardLocked()) { if (pos < 0) return false; // because getRowColFromPoint returns offset of 1,1 we need to // translate to offset 0,0 // pos -= (numCols + 1); int g = planes.getWhichGUI(pos); // lets check for hot spots if (g... | 1179 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1179/446c691d87b77c1be3b434626845a4988e42aea7/Screen5250.java/clean/tn5250j/src/org/tn5250j/framework/tn5250/Screen5250.java | [
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caption = (s == null ? "" : s ).getBytes(); if (created) { observer.setUpdate(false); observer = new AnimationObserver(); updateIcon(null); } | setToolTip(s); | public void setCaption(String s) { caption = (s == null ? "" : s ).getBytes(); if (created) { observer.setUpdate(false); observer = new AnimationObserver(); updateIcon(null); } } | 4176 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4176/ee7784b3075d4b224e5a7cd16d8ae91bc6b1fb9b/WinTrayIconService.java/buggy/src/jdic/src/win32/classes/org/jdesktop/jdic/tray/internal/impl/WinTrayIconService.java | [
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if(text.equals("[reset]") || text.equals("[sysreq]") || text.equals("[attn]")) { bufferedKeys = ""; keysBuffered = false; setKBIndicatorOff(); | if(text.equals("[reset]") || text.equals("[sysreq]") || text.equals("[attn]")) { | public void sendKeys(String text) { if (keyboardLocked) { if(text.equals("[reset]") || text.equals("[sysreq]") || text.equals("[attn]")) { bufferedKeys = ""; keysBuffered = false; setKBIndicatorOff(); simulateMnemonic(getMnemonicValue(text)); } ... | 1179 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1179/164fea1bcfa92d225150e31fe0e5d58d3d38cb23/Screen5250.java/clean/tn5250j/src/org/tn5250j/Screen5250.java | [
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protected String getCacheKey() { return getEntityIdentifier().getKey();// return getKey() + new Boolean(isGroup()).hashCode();} | 1895 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/1895/a4edc9270482fc3984166f95f0cd9b1c2c4058b7/GroupMemberImpl.java/clean/source/org/jasig/portal/groups/GroupMemberImpl.java | [
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public TA_RetCode LINEARREG_SLOPE( int startIdx, int endIdx, double inReal[], int optInTimePeriod, MInteger outBegIdx, MInteger outNbElement, double outReal[] ){ int outIdx; int today, lookbackTotal; double SumX, SumXY, SumY, SumXSqr, Divisor; int i; double tempValue1; if( startIdx < 0 ) return TA_RetCode. TA_OUT_OF_... | 51465 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51465/1a230e9b7099cbd2b7e9eb1294130ca009bfedf4/Core.java/buggy/trunk/ta-lib/java/src/TA/Lib/Core.java | [
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String username = st.nextToken().trim(); String timeStamp = st.nextToken().trim(); String elementName = st.nextToken().trim(); String operationType = st.nextToken().trim(); String comment; if ( st.countTokens() > 0 ) { comment = st.nextToken().trim(); } else { comment = ""; } /* * a branch event shouldn't trigger a b... | private Modification parseEntry(String line) { System.out.println("parsing entry: " + line); StringTokenizer st = new StringTokenizer(line, DELIMITER); // we should get either 4 (w/o comments) or 5 tokens (w/ comments) if ( (st.countTokens()<4) || (st.countTokens()>5) ) { return null; } String ... | 55334 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55334/cf8bdb14d59ffc7bba2335627d25f68867c5a366/ClearCase.java/clean/main/src/net/sourceforge/cruisecontrol/sourcecontrols/ClearCase.java | [
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if (!info.exists()) { | if (!store.fetchInfo().exists()) { | public static String getLocationText(IResource resource) { if (!resource.isLocal(IResource.DEPTH_ZERO)) return NOT_LOCAL_TEXT; URI resolvedLocation = resource.getLocationURI(); URI location = resolvedLocation; if (resource.isLinked()) { location = resource.getRawLocationURI(); } if (location == null) { ret... | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/eb48d331be04e291f334df0895937b2de30fab69/IDEResourceInfoUtils.java/buggy/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/internal/ide/dialogs/IDEResourceInfoUtils.java | [
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mapDispNameToQuery.put( displayName, query ); mapResultSetToQuery.put( resultSetName, query ); | this.mapResultSetToReportItem.put( resultSetName, reportItem ); | private void prepareMetaData( ) throws EngineException { ReportQueryBuilder queryBuilder = new ReportQueryBuilder( ); // load query -> report item design queryBuilder.build( report, executionContext ); mapQueryToReportItem = queryBuilder.getQueryToReportItemMap( ); // load query -> result set name loadResultSe... | 5230 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5230/1dcd377fadf82fab37b0b0e582d66281873338c5/DataExtractionTask.java/buggy/engine/org.eclipse.birt.report.engine/src/org/eclipse/birt/report/engine/api/impl/DataExtractionTask.java | [
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logger.error("Created RTP session: " + ip + " " + port); | System.err.println("Created RTP session: " + ip + " " + port); | private void transmitManager(Processor p) { logger.debug("Dmarrage: transmitManager"); logger.info("Transmission d'un flux audio avec un RTPManager"); try { DataSource output = p.getDataOutput(); PushBufferDataSource pbds = (PushBufferDataSource) output; RTPManager rtpMgr = RTPManager.newInstance(); Sess... | 55998 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/55998/c81ac69bb7bcbac171df56170098b62d506718d3/RTPServer.java/buggy/NetJukeBox/src/proto/serveur/RTPServer.java | [
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selectedTopic.setReadFullDesciption(false); | selectedTopic.setReadFullDesciption(true); | public String processActionToggleDisplayExtendedDescription() { LOG.debug("processActionToggleDisplayExtendedDescription()"); String redirectTo = getExternalParameterByKey(REDIRECT_PROCESS_ACTION); if (redirectTo == null) { setErrorMessage("Could not find a redirect page : Read / Hide full descripti... | 2021 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2021/d7728ba67a3c81571b9acce0832591c356f54418/DiscussionForumTool.java/buggy/msgcntr/messageforums-app/src/java/org/sakaiproject/tool/messageforums/DiscussionForumTool.java | [
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if (Layout.joiners.contains(node) && !KjcOptions.decoupled) { | if (Layout.getJoiners().contains(node) && !KjcOptions.decoupled) { | public void visitNode(FlatNode node) { //this is a mapped joiner, we do not want to generate code for //joiners in the decoupled case if (Layout.joiners.contains(node) && !KjcOptions.decoupled) { realTiles.add(Layout.getTile(node.contents)); joinerCode(node); //After done with node drops its content... | 5955 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5955/5b2a87706aed7992affe11d823069f4e5bc6fc36/TileCode.java/buggy/streams/src/at/dms/kjc/raw/TileCode.java | [
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return (String) columnIdentifiers.get(column); | } return result; | public String getColumnName(int column) { // Check for Column if (columnIdentifiers == null || column >= getColumnCount()) { return super.getColumnName(column); } // Return Column name return (String) columnIdentifiers.get(column); } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/3fecc4797b433a10203c51309b9d8626f7783895/DefaultTableModel.java/clean/core/src/classpath/javax/javax/swing/table/DefaultTableModel.java | [
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sbKey.append("userId:").append(staticData.getPerson().getID()).append(", "); | if(staticData.getPerson().isGuest()) { k.setKeyScope(ChannelCacheKey.SYSTEM_KEY_SCOPE); sbKey.append("userId:").append(staticData.getPerson().getID()).append(", "); } else { k.setKeyScope(ChannelCacheKey.INSTANCE_KEY_SCOPE); } sbKey.append("authenticated:").append(staticData.getPerson().getSecurityContext().isAuthen... | public ChannelCacheKey generateKey () { ChannelCacheKey k = new ChannelCacheKey(); StringBuffer sbKey = new StringBuffer(1024); // guest pages are cached system-wide k.setKeyScope(ChannelCacheKey.SYSTEM_KEY_SCOPE); sbKey.append("org.jasig.portal.CHeader: "); sbKey.append("userId:").append(staticData... | 24959 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/24959/b12b54cabe9ce0d489b77b62e04152e5602d41ec/CHeader.java/buggy/source/org/jasig/portal/channels/CHeader.java | [
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super.setContents(model); | doSetContents(model); | public void fireModelUpdate() { // remove all the connections (they will be recreated) NestedGraphModelNode previousNode = model.getPreviousRootNode(); NestedGraphModelNode nodeToMoveTo = model.getCurrentNode(); NestedGraphModelNode nodeToSelect = nodeToMoveTo; // node to select in the TreeViewer //@tag b... | 11225 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11225/518bb12d99a5eb06787b0b371913d8fe0277378e/NestedGraphViewerImpl.java/buggy/org.eclipse.zest.core/src/org/eclipse/zest/core/internal/nestedgraphviewer/NestedGraphViewerImpl.java | [
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String extrainfo ) | String extrainfo) | public static String getHeader(Context context, String action, String extrainfo ) { String email = "anonymous"; EPerson e = context.getCurrentUser(); if (e != null ) { email = e.getEmail(); } String result = new String( email + ":" + context.getExtraLog... | 47214 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47214/85c7430ba7691f831fafc420459d280408310eb9/LogManager.java/clean/dspace/src/org/dspace/core/LogManager.java | [
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String fromFile = (String)enum.nextElement(); String toFile = (String)filecopyList.get(fromFile); | String fromFile = (String) enum.nextElement(); String toFile = (String) filecopyList.get(fromFile); | private void copyFilesToDestination() { if (filecopyList.size() > 0) { log("Copying " + filecopyList.size() + " file" + (filecopyList.size() == 1 ? "" : "s") + " to " + destDir.getAbsolutePath()); Enumeration enum = filecopyList.keys(); while (en... | 639 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/639/c6c232893c39257745a8f7a618bcdb5c59791cae/NetRexxC.java/clean/src/main/org/apache/tools/ant/taskdefs/optional/NetRexxC.java | [
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Logger.minor(this, "" + (System.currentTimeMillis() % 60000) + " " + _sock.getLocalPort() + " <- " | Logger.minor(this, "" + (System.currentTimeMillis() % 60000) + ' ' + _sock.getLocalPort() + " <- " | public void checkFilters(Message m) { if ((m.getSource()) instanceof PeerNode) { ((PeerNode)m.getSource()).addToLocalNodeReceivedMessagesFromStatistic(m); } boolean matched = false; if ((!(m.getSpec().equals(DMT.packetTransmit))) && logMINOR) { if ((m.getSpec().equals(DMT.ping) || m.getSpec().equals(DMT.pong)... | 50287 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50287/62fd59041864b4ed1f43adc676de6bfb5ea977f3/UdpSocketManager.java/clean/src/freenet/io/comm/UdpSocketManager.java | [
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Checkpoint toSend = (Checkpoint)((ArrayList)(storage.get(current))).get(globalState); | Checkpoint toSend = (Checkpoint)((ArrayList)(storage.get(current))).get(globalState); | private void recoverFrom(int globalState, UniqueID failed){ try { if (globalState==0){ // recovery line is not given // use last recovery line globalState=this.recoveryLine; } logger.info("[RECOVERY] Recovering system from " + globalState); this.globalIncarnation++; Enumeration... | 14315 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/14315/03d8487529d188b68ec5675e0fa984ce37dd9045/GlobalFTServer.java/clean/src/org/objectweb/proactive/core/body/ft/util/GlobalFTServer.java | [
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case Dict.VERS_UNKNOWN: return HTMLVersion(); | case Dict.VERS_UNKNOWN : return HTMLVersion(); | public short apparentVersion() { switch (this.doctype) { case Dict.VERS_UNKNOWN: return HTMLVersion(); case Dict.VERS_HTML20: if ((this.versions & Dict.VERS_HTML20) != 0) return Dict.VERS_HTML20; break; case Dict.VERS_HTML32: ... | 53077 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53077/d0c0d9bb39e0a2afdc246686412b72747622e53b/Lexer.java/buggy/jtidy/src/main/org/w3c/tidy/Lexer.java | [
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return realThis(thisObj, f).jsFunction_strike(); | return realThis(thisObj, f).tagify("strike", null, null); | public Object execMethod (int methodId, IdFunction f, Context cx, Scriptable scope, Scriptable thisObj, Object[] args) throws JavaScriptException { if (prototypeFlag) { switch (methodId) { case ConstructorId_fromCharCode: return jsStaticF... | 51996 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51996/fb69c14ae4e860dfb5b5df7d866e510acca73ed9/NativeString.java/clean/js/rhino/src/org/mozilla/javascript/NativeString.java | [
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super(msg); | public InvalidParameterException(String msg) { super(msg); } | 50763 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50763/375948b746a7ee130ddcfdc51ac2e51092612050/InvalidParameterException.java/buggy/core/src/classpath/java/java/security/InvalidParameterException.java | [
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setTitle("Preferences"); Container contentPane2 = getContentPane(); contentPane2.setLayout(new BorderLayout()); | setTitle("Preferences"); Container contentPane2 = getContentPane(); contentPane2.setLayout(new BorderLayout()); | private void initComponents() { // JFormDesigner - Component initialization - DO NOT MODIFY //GEN-BEGIN:initComponents dialogPane = new JPanel(); contentPane = new JPanel(); tabbedPane1 = new JTabbedPane(); panel1 = new JPanel(); label2 = new JLabel(); startupAction... | 51505 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51505/fe7a9c9f3de6f8ae9a60f9e9c118c31baf44de7f/DialogPrefs.java/buggy/src/org/antlr/works/dialog/DialogPrefs.java | [
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OXFProperties.PropertySet propertySet = OXFProperties.instance().getPropertySet(); config.setIsolationDegree(isolationDegree != null ? isolationDegree : propertySet.getString(ISOLATION_DEGREE_PROPERTY)); | OXFProperties.PropertySet propertySet = getPropertySet(); config.setIsolationDegree(isolationDegree != null ? isolationDegree : propertySet.getString(ISOLATION_DEGREE_PROPERTY)); | protected Config readConfig(Document doc) { Config config = new Config(); // Try local configuration first String url = XPathUtils.selectStringValueNormalize(doc, "/config/url"); String username = XPathUtils.selectStringValueNormalize(doc, "/config/username"); String password = XP... | 57229 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57229/03b10db10c1f51db8b613ae7a3179c296e11f816/TaminoProcessor.java/buggy/src/java/org/orbeon/oxf/processor/tamino/TaminoProcessor.java | [
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if (!okay) { throw exception; } return result; | chain.checkForExceptions(); | public synchronized PacketResult submitProcedure(String sql, SQLWarningChain chain) throws SQLException { PacketResult result = null; PacketResult tmp = null; boolean okay = true; byte tmpByte; SQLException exception = null; try { execut... | 5753 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5753/82db06b5ace2496789b551dd8bd53aa218a17088/Tds.java/clean/src.old/main/com/internetcds/jdbc/tds/Tds.java | [
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alloc = (Allocation)task.getPlanElement(); publishRemove(alloc); | if (!(task.beforeCommitment(new Date(currentTimeMillis())))) { if (logger.isWarnEnabled()) { logger.warn("rescind unprovided Task Allocations: will not rescind allocation ... after commitment"+ task.getCommitmentDate()+ " task:"+task); } } else { alloc = (Allocation)task.getPlanElement(); publishRemove(alloc); } | private void rescindTaskAllocations(Collection tasks) { Task task; Allocation alloc; Iterator taskIt = tasks.iterator(); while (taskIt.hasNext()) { task = (Task) taskIt.next(); // System.out.println("SDSD rescind: " + task + "\n"); alloc = (Allocation)task.getPlanElement(); publishRe... | 11319 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11319/6f7a6528363a7e44e153e2de579ac547406d79db/InventoryPlugin.java/buggy/bbn/src/org/cougaar/logistics/plugin/inventory/InventoryPlugin.java | [
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fFilesToIndex= changed.size() + removed.size(); | fTotalTasks= changed.size() + removed.size(); | public PDOMFastHandleDelta(PDOMFastIndexer indexer, ICElementDelta delta) throws CoreException { super(indexer); processDelta(delta, changed, changed, removed); fFilesToIndex= changed.size() + removed.size(); } | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/2d8f966f3b06d96391a0bfd91b2bae084e95bcda/PDOMFastHandleDelta.java/buggy/core/org.eclipse.cdt.core/parser/org/eclipse/cdt/internal/core/pdom/indexer/fast/PDOMFastHandleDelta.java | [
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} | } | protected void recoverJobs() throws JobPersistenceException { Connection conn = null; boolean transOwner = false; try { conn = getNonManagedTXConnection(); getLockHandler().obtainLock(conn, LOCK_TRIGGER_ACCESS); transOwner = true; //getLockHandler().o... | 3431 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/3431/a1e34efab77120ec8bb75b6dd44ed5d8a9b59918/JobStoreCMT.java/buggy/src/java/org/quartz/impl/jdbcjobstore/JobStoreCMT.java | [
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Dbxref dbxref = tsn.getFeatureDbxref(); | public int deleteFeatureAlias(final String schema, final ChadoTransaction tsn) throws SQLException { final Alias alias = tsn.getAlias(); alias.setSchema(schema); Dbxref dbxref = tsn.getFeatureDbxref(); SqlMapClient sqlMap = DbSqlConfig.getSqlMapInstance(); Integer synonym_id = ... | 10874 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/10874/4952c5c9afc9ea04749712cf2c41382433cee365/IBatisDAO.java/clean/uk/ac/sanger/artemis/chado/IBatisDAO.java | [
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return summary; | StringBuffer sum = new StringBuffer(); Fragment[] fragments = summary.getFragments(); for (int j=0; j<fragments.length; j++) { if (fragments[j].isHighlight()) { sum.append("<span class=\"highlight\">") .append(Entities.encode(fragments[j].getText())) .append("</span>"); } else if (fragments[j].isEllipsis()) { sum.appe... | public String getSummary() { return summary; } | 57484 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57484/b7a3ad29b18ba39c24bc510d9eb4132607b657dc/SearchResultBean.java/buggy/contrib/web2/src/main/java/org/apache/nutch/webapp/common/SearchResultBean.java | [
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if (paramExtPositions == null) paramExtPositions = new ArrayList(); paramExtPositions.add(new Integer(i)); | stmt.addExtPosition(i); | private ArrayList readAndSetParams(int i, DRDAStatement stmt, int drdaType, EngineParameterMetaData pmeta, ArrayList paramExtPositions, int paramLenNumBytes) throws DRDAProtocolException, SQLException { PreparedStatement ps = stmt.getPreparedStatement(); // mask out null indicator... | 56322 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56322/c050ed4389184bd98d905532a3c1ad5a2c6c6862/DRDAConnThread.java/clean/java/drda/org/apache/derby/impl/drda/DRDAConnThread.java | [
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addTrim(control, location, position, SWT.DEFAULT, SWT.DEFAULT); | removeTrim(control); int index = convertSwtConstantToIndex(location); List list = controls[index]; insertBefore(list, control, position); mapPartOntoPosition.put(control, new Integer(index)); | public void addTrim(Control control, int location, Control position) { addTrim(control, location, position, SWT.DEFAULT, SWT.DEFAULT); } | 58148 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/58148/0731fa1db55907d17ca28e7373a41200fb6354b8/TrimLayout.java/clean/bundles/org.eclipse.ui.workbench/Eclipse UI/org/eclipse/ui/internal/TrimLayout.java | [
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public void testBlockIndent() { try { BraceReduction rm = doc._reduced; doc.insertString(0, "hello\n{\n{\n {", null); doc.indentBlock(8, 13); assertEquals("0.1", "hello\n{\n {\n {", doc.getText(0, doc.getLength())); } catch( javax.swing.text.BadLocationException e) { System.out.println(e.toString()); } } | public void testBlockIndent() throws BadLocationException { BraceReduction rm = doc._reduced; doc.insertString(0, "hello\n{\n{\n {", null); doc.indentBlock(8, 13); assertEquals("0.1", "hello\n{\n {\n {", doc.getText(0, doc.getLength())); } | public void testBlockIndent() { try { // just paren BraceReduction rm = doc._reduced; doc.insertString(0, "hello\n{\n{\n {", null); doc.indentBlock(8, 13); assertEquals("0.1", "hello\n{\n {\n {", doc.getText(0, doc.getLength())); } catch( javax.swing.text.BadLocationException e) { S... | 11192 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11192/62cd56918db49abf5170cd3da7ff92f86724ef97/IndentTest.java/clean/drjava/src/edu/rice/cs/drjava/IndentTest.java | [
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newObject = (SimpleScriptable) Context.getCurrentContext().newObject( pageInfo.getScope(), className); initJavaScriptObject( newObject ); return newObject; | final SimpleScriptable scriptable = (SimpleScriptable) c.newObject(this, className); return scriptable; | public SimpleScriptable makeJavaScriptObject( final String className ) { final JavaScriptEngine.PageInfo pageInfo = getPageInfo(); final SimpleScriptable newObject; try { newObject = (SimpleScriptable) Context.getCurrentContext().newObject( pageInfo.getScope(), classNa... | 47843 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47843/9ada24d275eb4c948830a5fbefb54293d8fa03f5/SimpleScriptable.java/clean/htmlunit/src/java/com/gargoylesoftware/htmlunit/javascript/SimpleScriptable.java | [
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categoryBuilder.addOutageService(monitoredService.getNodeId(), ipInterface.getId(), ipInterface.getIpAddress(), ipInterface.getNode().getLabel(), monitoredService.getServiceType().getName()); | categoryBuilder.addOutageService( monitoredService.getNodeId(), ipInterface.getId(), ipInterface.getIpAddress(), ipInterface.getNode().getLabel(), serviceType.getName()); | private StatusCategory createCategory(String category) { Collection <OnmsOutage>outages; CategoryBuilder categoryBuilder = new CategoryBuilder(); StatusCategory statusCategory = new StatusCategory(); Category categoryDetail = m_categorydao.getCategoryByLabel(category); //statusCategory.setComment(category... | 47678 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47678/49de4bd3739d9f15161ba889e7e5e7a110829dbc/DefaultCategoryStatusService.java/buggy/opennms-webapp/src/main/java/org/opennms/web/svclayer/catstatus/support/DefaultCategoryStatusService.java | [
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cfw.startMethod(methodName, methodDesc, (short)(ClassFileWriter.ACC_PUBLIC | ClassFileWriter.ACC_FINAL)); | void generateBodyCode(Context cx) { initBodyGeneration(cx); String methodName, methodDesc; if (inDirectCallFunction) { methodName = "callDirect"; methodDesc = fnCurrent.getDirectCallMethodSignature(); } else { methodName = "call"; methodDesc... | 19042 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19042/7de4ae25f0fd144cbc3ddabc47e7a327a747af5a/Codegen.java/clean/src/org/mozilla/javascript/optimizer/Codegen.java | [
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assertNull(envProvider.getVariable(NAME_CWD, worksp, true, false)); assertNull(envProvider.getVariable(NAME_CWD, mproj, true, false)); | public void testEnvCWDPWD(){ doInit(); IConfiguration cfg = mproj.getConfigurations()[0]; // CWD/PWD vars should NOT be overwritten anywhere assertNull(envProvider.getVariable(NAME_CWD, worksp, true, false)); assertNull(envProvider.getVariable(NAME_CWD, mproj, true, false)); IBuildEnvironmentVariable a = envPro... | 6192 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6192/f6656c68c4680b5da0f8224556983d4273800ae8/ManagedBuildEnvironmentTests.java/clean/build/org.eclipse.cdt.managedbuilder.core.tests/tests/org/eclipse/cdt/managedbuilder/core/tests/ManagedBuildEnvironmentTests.java | [
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public org.quickfix.field.StipulationType get(org.quickfix.field.StipulationType value) | public quickfix.field.StipulationType get(quickfix.field.StipulationType value) | public org.quickfix.field.StipulationType get(org.quickfix.field.StipulationType value) throws FieldNotFound { getField(value); return value; } | 5926 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5926/fecc27f98261270772ff182a1d4dfd94b5daa73d/QuoteRequest.java/buggy/src/java/src/quickfix/fix43/QuoteRequest.java | [
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a.putValue(Action.DEFAULT, icon); | a.putValue(Action.DEFAULT, name); | private void _setUpAction(Action a, String icon, String shortDesc) { a.putValue(Action.SMALL_ICON, _getIcon(icon + "16.gif")); a.putValue(Action.DEFAULT, icon); a.putValue(Action.SHORT_DESCRIPTION, shortDesc); } | 11192 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/11192/b4e48852da60211c31b0141438d3f04d6c627263/MainFrame.java/clean/drjava/src/edu/rice/cs/drjava/ui/MainFrame.java | [
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public AnnogenTestCase(String name) { super(name); } | public AnnogenTestCase() {} | public AnnogenTestCase(String name) { super(name); } | 4519 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/4519/b1deed3c7d9c1c9325f9de7cd36b0c47902debfa/AnnogenTestCase.java/buggy/annogen/trunk/annogen/test/cases/src/org/codehaus/annogen/test/cases/AnnogenTestCase.java | [
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Log.setApplicationVersionDate("$Id: BrowserControlFactory.java,v 1.5 2001-07-27 20:57:51 ashuk%eng.sun.com Exp $"); | Log.setApplicationVersionDate("$Id: BrowserControlFactory.java,v 1.6 2001-09-10 22:02:05 edburns%acm.org Exp $"); | public static void main(String [] args){ System.out.println("doing asserts"); Assert.setEnabled(true); Log.setApplicationName("BrowserControlFactory"); Log.setApplicationVersion("0.0"); Log.setApplicationVersionDate("$Id: BrowserControlFactory.java,v 1.5 2001-07-27 20:57:51 ashuk%eng.sun.com Exp $"); ... | 12904 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12904/f79c48d1fb1cdaa145f672cd60115868156db7a9/BrowserControlFactory.java/clean/java/webclient/classes_spec/org/mozilla/webclient/BrowserControlFactory.java | [
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mColor = TagColor.fromString(e.getAttribute(MailService.A_COLOR, "0")); | mColor = Color.fromString(e.getAttribute(MailService.A_COLOR, "0")); | ZSoapTag(Element e) throws ServiceException { mColor = TagColor.fromString(e.getAttribute(MailService.A_COLOR, "0")); mId = e.getAttribute(MailService.A_ID); mName = e.getAttribute(MailService.A_NAME); mUnreadCount = (int) e.getAttributeLong(MailService.A_UNREAD, 0); } | 6965 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6965/73c855ea0bf07338901172eda084470dae3433e3/ZSoapTag.java/clean/ZimbraServer/src/java/com/zimbra/cs/zclient/soap/ZSoapTag.java | [
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if (dbTblCol==null) dbTblCol = new GenericColumn(dbTblColName, existingTable); | if (dbTblCol==null) dbTblCol = new GenericColumn(dbTblColName, existingTable); removedCols.remove(dbTblCol); | public void synchronise() throws SQLException, BuilderException { // Get database metadata. DatabaseMetaData dmd = this.getConnection().getMetaData(); String catalog = this.getConnection().getCatalog(); String schema = dmd.getUserName(); // Identify and temporarily preserv... | 2000 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2000/4293a62eb131d88b6fc4c1e945c1b65a0e176963/JDBCTableProvider.java/clean/src/java/org/biomart/builder/controller/JDBCTableProvider.java | [
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e.printStackTrace(); fail("There is a problem that is preventing the tests to continue!"); | fail("" + e.getMessage()); | private void runMyTest(String whichTest){ request.setAttribute("runTest", whichTest); try { pageContext.forward( request.getRequestURI() + "/org/apache/struts/taglib/bean/TestIncludeTag.jsp"); } catch (Exception e) { e.printStackTrace(); fail("There is a problem that is preventing the tests to co... | 2722 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2722/41f313c7dd7ac74b5445118d14aee50b24296729/TestIncludeTag.java/clean/src/test/org/apache/struts/taglib/bean/TestIncludeTag.java | [
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courseMemberMap = membershipManager.getAllCourseMembers(true, true); | courseMemberMap = membershipManager.getAllCourseMembers(true, false, true); | public Map getAllCourseMembers() { if (LOG.isDebugEnabled()) { LOG.debug("getAllCourseMembers()"); } if (courseMemberMap == null) { courseMemberMap = membershipManager.getAllCourseMembers(true, true); } return courseMemberMap; } | 52248 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52248/3289e84369eeee6ad88e4b93fa7ab64a1b53ccc7/DiscussionForumManagerImpl.java/buggy/messageforums-component-shared/src/java/org/sakaiproject/component/app/messageforums/ui/DiscussionForumManagerImpl.java | [
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for (int i = 0; i < mygroups.size(); i++) { FieldMap groupFields = (FieldMap)mygroups.get(i); | for (int i = 0; i < groups.size(); i++) { FieldMap groupFields = (FieldMap)groups.get(i); | void calculateString(StringBuffer buffer, int[] preFields, int[] postFields) { if (preFields != null) { for (int i = 0; i < preFields.length; i++) { Field field = getField(preFields[i], null); field.toString(buffer); buffer.append('\001'); } ... | 6791 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6791/ed98aa4c43f995af0db9d3ab676beb630d753e59/FieldMap.java/buggy/src/quickfix/FieldMap.java | [
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CPElement removed = removePathFromResourceGroups((CPElement) elem, fIncludeSymPathsList.getElements()); if (removed != null) { fCPathList.removeElement(removed); | if (removePathFromResourceGroups((CPElement)elem, fIncludeSymPathsList.getElements()) == null) { updatePathOnResourceGroups(((CPElement)elem).getInherited(), fIncludeSymPathsList.getElements()); | private void removeEntry() { List selected = getSelection(); Object elem = selected.get(0); if (elem instanceof CPElement) { CPElement removed = removePathFromResourceGroups((CPElement) elem, fIncludeSymPathsList.getElements()); if (removed != null) { fCPathList.removeElement(removed); } fCPathList.dialo... | 54911 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54911/53738dc5bfed46178452b79843ccf0ac0f233d45/CPathIncludeSymbolEntryPage.java/buggy/core/org.eclipse.cdt.ui/src/org/eclipse/cdt/internal/ui/dialogs/cpaths/CPathIncludeSymbolEntryPage.java | [
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return name; } | Alphabet a = getMatches(); if (this instanceof BasisSymbol) { List l = ((BasisSymbol) this).getSymbols(); if (l.size() > 1) { StringBuffer sb = new StringBuffer(); sb.append('('); for (Iterator si = l.iterator(); si.hasNext(); ) { Symbol sym = (Symbol) si.next(); sb.append(sym.getName()); if (si.hasNext()) sb.append('... | public String getName() { return name; } | 50115 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50115/50df2bb038e847e65fa3345d040faec4b21c5bc8/SimpleSymbol.java/clean/src/org/biojava/bio/symbol/SimpleSymbol.java | [
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boolean synPredMatched295 = false; | boolean synPredMatched294 = false; | public final void checkSuspiciousExpressionStatement( int prevToken ) throws RecognitionException, TokenStreamException { returnAST = null; ASTPair currentAST = new ASTPair(); AST checkSuspiciousExpressionStatement_AST = null; boolean synPredMatched295 = false; if (((_tokenSet_18.member(LA(1))) && (_tokenSet... | 6462 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/6462/27957314a380e54096257a6753ad9d316ee78892/GroovyRecognizer.java/buggy/src/main/org/codehaus/groovy/antlr/parser/GroovyRecognizer.java | [
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BitSet bits2 = new BitSet(); for (int i = 0; i < tree.getChildCount(node); i++) { | BitSet bits2 = new BitSet(); for (int i = 0; i < tree.getChildCount(node); i++) { | public double getSumCladeFrequency(Tree tree, NodeRef node, BitSet bits) { double sumCladeFrequency = 0.0; if (tree.isExternal(node)) { if (taxonList != null) { int index = taxonList.getTaxonIndex(tree.getNodeTaxon(node).getId()); bits.s... | 51824 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/51824/4d3679b1480cd31578aa6667987b40643898c07f/TreeAnnotator.java/buggy/src/dr/app/tools/TreeAnnotator.java | [
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ruby.getRubyFrame().getLastFunc(), argsObj, 3); | ruby.getRubyFrame().getLastFunc(), args, 3); | public RubyObject eval(Ruby ruby, RubyObject self) { // TMP_PROTECT; if (ruby.getRubyFrame().getLastClass() == null) { throw new RubyNameException("superclass method '" + ruby.getRubyFrame().getLastFunc().toName() + "' disabled"); } RubyBloc... | 45753 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45753/f629550c5947df9c1dbe414645f3dc76bcb70df4/SuperNode.java/clean/org/jruby/nodes/SuperNode.java | [
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IJavaProject javaProject = JavaCore.create(project); String path = name.replace('.', '/') + ".java"; | protected void openReference() { String name = text.getText(); IProject project = part.getPage().getPDEEditor().getCommonProject(); IJavaProject javaProject = JavaCore.create(project); String path = name.replace('.', '/') + ".java"; try { IJavaElement result = javaProject.findElement(new Path(path)); if (resu... | 14404 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/14404/d31a9651542b0f36656cd04a3038389b779eb239/ClassAttributeRow.java/clean/ui/org.eclipse.pde.ui/src_Forms/org/eclipse/pde/internal/ui/neweditor/plugin/rows/ClassAttributeRow.java | [
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if ( element != selectedParameter ) | if ( element != selectedParameter || property.equals( COLUMN_NAME ) ) | public boolean canModify( Object element, String property ) { if ( element != selectedParameter ) { return false; } if ( element == newParameter ) { if ( !property.equals( COLUMN_VALUE ) ) { return false; } } else if ( property.equals( COLUMN_NAME ) ) { return false; } if ( pro... | 5230 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5230/ffe25c84db39ac36a136a2b6d3c13bc9dc6b6fd2/CascadingParametersDialog.java/clean/UI/org.eclipse.birt.report.designer.ui/src/org/eclipse/birt/report/designer/ui/dialogs/CascadingParametersDialog.java | [
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public void sendClientError(byte icmpType, byte icmpCode, ByteBuffer icmpData, IPPacketHeader header) | public void sendClientError(byte icmpType, byte icmpCode, ByteBuffer icmpData, InetAddress icmpSource, IPPacketHeader header) | public void sendClientError(byte icmpType, byte icmpCode, ByteBuffer icmpData, IPPacketHeader header) { sendError(CLIENT, icmpType, icmpCode, icmpData, header); } | 49954 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49954/17431bd5d4fe75d9d026f2bb886da3b07d0d5ac1/UDPSessionImpl.java/clean/mvvm/main/com/metavize/mvvm/tapi/impl/UDPSessionImpl.java | [
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tracker.getHttpPort())); | tracker.getPort())); | locateMapOutputs(String jobId, int[] mapTasksNeeded, int reduce) { ArrayList result = new ArrayList(mapTasksNeeded.length); JobInProgress job = getJob(jobId); for (int i = 0; i < mapTasksNeeded.length; i++) { TaskStatus status = job.findFinishedMap(mapTasksNeeded[i]); ... | 50331 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50331/a21c4ae0ea3a8edfbfaa69f83a9db4043e99186c/JobTracker.java/clean/src/java/org/apache/hadoop/mapred/JobTracker.java | [
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for (int i = colStart; i <= colEnd; i++) { boolean nullable = (hasRs ? (rsmeta.isNullable(i) == rsmeta.columnNullable) : (pmeta.isNullable(i) == JDBC30Translation.PARAMETER_NULLABLE)); int colType = (hasRs ? rsmeta.getColumnType(i) : pmeta.getParameterType(i)); int[] outlen = {-1}; int drdaType = (hasRs ?FdocaConstants... | for (int i = colStart; i <= colEnd; i++) { boolean nullable = (hasRs ? (rsmeta.isNullable(i) == rsmeta.columnNullable) : (pmeta.isNullable(i) == JDBC30Translation.PARAMETER_NULLABLE)); int colType = (hasRs ? rsmeta.getColumnType(i) : pmeta.getParameterType(i)); int[] outlen = {-1}; int drdaType = (hasRs ?FdocaConstants... | private void writeSQLDTAGRP(DRDAStatement stmt, ResultSetMetaData rsmeta, EmbedParameterSetMetaData pmeta, int colStart, int colEnd, boolean first) throws DRDAProtocolException, SQLException { int length = (FdocaConstants.SQLDTAGRP_COL_DSC_SIZE * ((colEnd+1) - colStart)) + 3; writer.writeByte(l... | 56322 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/56322/9ab36fe5be3632bbd1703a025618a585f0db4a57/DRDAConnThread.java/buggy/java/drda/org/apache/derby/impl/drda/DRDAConnThread.java | [
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private static final HashMap parseAttributes(String html) { HashMap attrs = new HashMap(); String name; String value; // Loop over the attributes. // We maintain counter is so that we don't accidentally enter // an infinite loop int i = 0; int count =... | 12196 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/12196/558097820abc0198518796cedde797658cda9a5e/HtmlToText.java/buggy/archive/core-platform/src/com/arsdigita/util/HtmlToText.java | [
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if (amplicon == null) { amplicon = newItem("Amplicon"); String ampliconIdentifier = getColumnValue(columnNameMap, thisRow, DRSC_AMPLICON_COLUMN); String ampliconLength = getColumnValue(columnNameMap, thisRow, AMPLICON_LENGTH_COLUMN); screenHit.setReference("amplicon", amplicon); amplicon.setAttribute("identifier", amp... | screenHit.setReference("amplicon", amplicon); | public void process(Reader reader) throws Exception { BufferedReader br = new BufferedReader(reader); if (organism == null) { organism = tgtItemFactory.makeItem(); organism.setAttribute("taxonId", taxonId); writer.store(ItemHelper.convert(organism)); } ... | 7196 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7196/e4074b352c282fceb2f3597e362c3e42321951e8/FlyRNAiScreenConverter.java/buggy/bio/sources/flyrnai-screens/main/src/org/intermine/bio/dataconversion/FlyRNAiScreenConverter.java | [
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public static String buildUPFile(String tagId,int method,String methodNodeId,String targetNodeId,List extraElements) throws PortalException { | public static String buildUPFile(String tagId,int method,String methodNodeId,String targetNodeId,String extraElements) throws PortalException { | public static String buildUPFile(String tagId,int method,String methodNodeId,String targetNodeId,List extraElements) throws PortalException { return (buildUPFileBase(tagId,method,methodNodeId,targetNodeId,extraElements)).concat(PORTAL_URL_SUFFIX); } | 24959 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/24959/d380e1dd88f17d8f6b24e104a67b0adc9af2df86/UPFileSpec.java/buggy/source/org/jasig/portal/UPFileSpec.java | [
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public static String getLocalPart(String qname) | public String getLocalPart() | public static String getLocalPart(String qname) { int index = qname.indexOf(':'); return (index < 0) ? qname : qname.substring(index+1); } | 2723 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/2723/0a59c863c802607a229820e928e851db21b9d055/QName.java/buggy/src/org/apache/xalan/utils/QName.java | [
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boot() | boot() throws VM_PragmaInterruptible | boot() { if (eventLoggers == null) { int n = VM_Scheduler.numProcessors; eventLoggers = new VM_EventLogger[n]; for (int i = 0; i < n; ++i) eventLoggers[i] = new VM_EventLogger(); } } | 5245 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/5245/b3eb8a5fcae0dc552de280cd4760954770ad3f0d/VM_EventLogger.java/buggy/rvm/src/vm/profiler/VM_EventLogger.java | [
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final StringBuffer sbChangenumber = new StringBuffer(); | final List changeNumbers = new ArrayList(); | public List getHistory(Date lastBuild, Date now, long quietPeriod) { ArrayList mods = null; final Perl5Util util = new Perl5Util(); //Init last modified to last build date. _lastModified = lastBuild; // next line is a trick to get the variable usable within the adhoc handler. final StringBuffer sbChangenumber = ... | 52149 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52149/99e89aac36b1f68976a3f45bd6743c06961b90e9/P4Element.java/buggy/main/src/net/sourceforge/cruisecontrol/element/P4Element.java | [
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public boolean deleteRaw(File f) throws IOException { | public boolean deleteRaw(Path f) throws IOException { | public boolean deleteRaw(File f) throws IOException { return dfs.delete(getPath(f)); } | 53958 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53958/ee01fef4b4fb82c7492a4a747793839a4d14cd39/DistributedFileSystem.java/clean/src/java/org/apache/hadoop/dfs/DistributedFileSystem.java | [
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public void compileApplyImports(ClassGenerator classGen, int min, int max) { final XSLTC xsltc = classGen.getParser().getXSLTC(); final ConstantPoolGen cpg = classGen.getConstantPool(); final Vector names = xsltc.getNamesIndex(); // Clear some datastructures _namedTemplates = new Hashtable(); _neededTemplates ... | 46591 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/46591/44e30452db6dad6cb68d165edcd789692589832e/Mode.java/clean/src/org/apache/xalan/xsltc/compiler/Mode.java | [
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if (this.pushbackToken != EOF && tt != ERROR) { String message = Context.getMessage2("msg.token.replaces.pushback", tokenToString(tt), tokenToString(this.pushbackToken)); throw new RuntimeException(message); } | if (this.pushbackToken != EOF && tt != ERROR) Context.codeBug(); | public void ungetToken(int tt) { if (this.pushbackToken != EOF && tt != ERROR) { String message = Context.getMessage2("msg.token.replaces.pushback", tokenToString(tt), tokenToString(this.pushbackToken)); throw new RuntimeException(message); } this.pushbackTo... | 19000 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/19000/5739d875ab983543fdf729f70a15773fdbe9b1bd/TokenStream.java/clean/src/org/mozilla/javascript/TokenStream.java | [
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return ValueFormatter.format( oValue, fs, rtc.getLocale( ), df ); | return ValueFormatter.format( oValue, fs, rtc.getULocale( ), df ); | public final String formatCategoryValue( int iType, Object oValue, int iDateTimeUnit ) { if ( oValue == null ) { return IConstants.NULL_STRING; } if ( iType == IConstants.TEXT ) // MOST LIKELY { return oValue.toString( ); } else if ( iType == IConstants.DATE_TIME ) { final Calendar ca = (Calendar) oVal... | 15160 /local/tlutelli/issta_data/temp/all_java1context/java/2006_temp/2006/15160/ae8909f5c697c610266e491d0af9a02eed14e2e4/AutoScale.java/buggy/chart/org.eclipse.birt.chart.engine/src/org/eclipse/birt/chart/computation/withaxes/AutoScale.java | [
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MinSizeConstraint c = (MinSizeConstraint)this.appliedConstraints.get( MIN_LENGTH_CONSTRAINT ); if(c == null) { | MinSizeConstraint c = (MinSizeConstraint)this.appliedConstraints.get( MIN_LENGTH_CONSTRAINT ); if(c == null) { | public int getMinLength() { MinSizeConstraint c = (MinSizeConstraint)this.appliedConstraints.get( MIN_LENGTH_CONSTRAINT ); if(c == null) { if(this.appliedConstraints.containsKey( LENGTH_CONSTRAINT )) { SizeConstraint sc = (SizeConstraint)this.appliedConstraints.get(LENGTH_CONSTRAINT); ... | 26970 /local/tlutelli/issta_data/temp/all_java2context/java/2006_temp/2006/26970/975905c7e8c55e5fe91c94dc583c4269318ca341/ConstrainedProperty.java/clean/src/commons/org/codehaus/groovy/grails/validation/ConstrainedProperty.java | [
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} | public void buildAllMarkers(IProgressMonitor monitor) { building = true; try { int markerLimit = view.getMarkerLimit(); monitor.beginTask(MarkerMessages.MarkerView_19, markerLimit == -1 ? 60 : 100); try { monitor.subTask(MarkerMessages.MarkerView_waiting_on_changes); if (monitor.isCanceled()) { r... | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/463fb046537cc5974ca1c2e10d796b2225e725a8/MarkerAdapter.java/clean/bundles/org.eclipse.ui.ide/src/org/eclipse/ui/views/markers/internal/MarkerAdapter.java | [
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if (comparer == null) return a.equals(b); else return comparer.equals(a, b); | if (comparer == null) { return a.equals(b); } else { return comparer.equals(a, b); } | private boolean keyEquals(Object a, Object b) { if (comparer == null) return a.equals(b); else return comparer.equals(a, b); } | 57470 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57470/391f2606b4ea2c1fb5052d938ca90877ee7631f6/CustomHashtable.java/buggy/bundles/org.eclipse.jface/src/org/eclipse/jface/viewers/CustomHashtable.java | [
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throw newValue.getRuntime().newNameError(name + " is a read-only variable"); | throw newValue.getRuntime().newNameError(name + " is a read-only variable", name); | public IRubyObject setValue(IRubyObject newValue) { assert newValue != null; throw newValue.getRuntime().newNameError(name + " is a read-only variable"); } | 47273 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47273/1278c5bb3507a052d150d814f15453542ae41aed/ReadonlyAccessor.java/buggy/src/org/jruby/internal/runtime/ReadonlyAccessor.java | [
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if (!path.endsWith("/")) path += "/"; String fullpath = path + getName(); try { ProjectBrowser pb = ProjectBrowser.TheInstance; System.out.println("Writing " + fullpath + "..."); pb.showStatus("Writing " + fullpath + "..."); File f = new File(fullpath); if (f.exists() && !overwrite) { String t = "Overwrite " + fullpa... | save(path, overwrite, null); | public void save(String path, boolean overwrite) { if (!path.endsWith("/")) path += "/"; String fullpath = path + getName(); try { ProjectBrowser pb = ProjectBrowser.TheInstance; System.out.println("Writing " + fullpath + "..."); pb.showStatus("Writing " + fullpath + "..."); File f = new ... | 7166 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7166/fdac7178d0d34f5b115168dbf474159070f17350/ProjectMemberModel.java/clean/src_new/org/argouml/uml/ProjectMemberModel.java | [
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throw new RubyBugException("can't convert to UTF8"); | Asserts.assertNotReached("can't convert to UTF8"); | public static RubyString pack(ArrayList list, RubyString iFmt) { Ruby ruby = iFmt.getRuntime(); char[] lFmt = iFmt.getValue().toCharArray(); int lFmtLength = lFmt.length; int idx = 0; int lLeftInArray = list.size(); StringBuffer lResult = new StringBuffer(); IRubyObj... | 49687 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/49687/071973606d94103b2d5cb6c793aa1e8809fc7b2a/Pack.java/buggy/org/jruby/util/Pack.java | [
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if ((args.length >= 4) && args[3].equalsIgnoreCase("bypass")== true) { | if ((args.length >= 5) && args[4].equalsIgnoreCase("bypass")== true) { | public static void main(String[] args) { String certnick = "JSSCATestCert"; int testCipher = 0; String testhost = "localhost"; int testport = 29753; String certDbPath = null; String passwdFile = "passwords"; boolean bypass = false; ... | 47609 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/47609/509a25cea2e0a8b08b0acb656da604fd0b0d8181/JSS_SSLClient.java/buggy/security/jss/org/mozilla/jss/tests/JSS_SSLClient.java | [
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return reallyCalcChecksum(aLine); | return super.calcChecksum(aLine); | private long calcChecksum(String aLine) { if (aLine.startsWith("import ")) { return IGNORE; } else { return reallyCalcChecksum(aLine); } } | 31427 /local/tlutelli/issta_data/temp/all_java3context/java/2006_temp/2006/31427/741454e7f18b1714499eda0c44dbdf75518683b0/StrictDuplicateCodeCheck.java/clean/src/checkstyle/com/puppycrawl/tools/checkstyle/checks/duplicates/StrictDuplicateCodeCheck.java | [
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protected boolean validatePage() { if (super.validatePage()) { if (getContainerFullPath().segmentCount() > 0) { IProject actualProject = ResourcesPlugin.getWorkspace().getRoot().getProject( getContainerFullPath().segment(0)); switch (getContainerFullPath().segmentCount()) { case 0 : // no pr... | 50596 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50596/d534a64502ae1e8eae9b0e0806af6e349690d4ae/WizardNewWOResourcePage.java/clean/src/wolips/java/org/objectstyle/wolips/wizards/WizardNewWOResourcePage.java | [
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} } } } } if (bondCount == 3) { | } } } } }else if (bondCount == 3) { | public DescriptorValue calculate(AtomContainer ac) throws CDKException { RingSet rs = (new AllRingsFinder()).findAllRings(ac); HueckelAromaticityDetector.detectAromaticity(ac, rs, true); double xlogP = 0; org.openscience.cdk.interfaces.Atom[] atoms = ac.getAtoms(); String symbol = ""; int bondCount = 0; int hsC... | 45254 /local/tlutelli/issta_data/temp/all_java4context/java/2006_temp/2006/45254/11cd872c3dbcc51a117ad375706e7a5334b88daa/XLogPDescriptor.java/clean/src/org/openscience/cdk/qsar/XLogPDescriptor.java | [
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subtask.setSource( clusterId_ ); return subtask; } | subtask.setSource(clusterId_); return subtask; } | private NewTask createLoadTask (Task parent_task, Task wdraw_task) { NewTask subtask = ldmFactory_.newTask(); Asset asset = parent_task.getDirectObject(); // Quantity Preference int quantity = (int)TaskUtils.getPreference(wdraw_task, AspectType.QUANTITY); Preference quantity_pf = createQuantityPreference(AspectTyp... | 7171 /local/tlutelli/issta_data/temp/all_java0context/java/2006_temp/2006/7171/e676429fb19749fc9df199a7a11f66b846876e07/SupplyExpander.java/clean/glm/src/org/cougaar/glm/plugins/inventory/SupplyExpander.java | [
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