prompt large_stringlengths 72 9.34k | completion large_stringlengths 0 7.61k |
|---|---|
<|file_name|>unassignedbugs.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python2
import urllib2
import urllib
from BeautifulSoup import BeautifulSoup
import smtplib
import ConfigParser
# Retreive user information
config = ConfigParser.ConfigParser()
config.read('config.cfg')
user = config.get('data','user')
passwor... | page = False |
<|file_name|>unassignedbugs.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python2
import urllib2
import urllib
from BeautifulSoup import BeautifulSoup
import smtplib
import ConfigParser
# Retreive user information
config = ConfigParser.ConfigParser()
config.read('config.cfg')
user = config.get('data','user')
passwor... | print soup.findAll('a',{'id': 'next'})
count += 1
pages = True |
<|file_name|>unassignedbugs.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python2
import urllib2
import urllib
from BeautifulSoup import BeautifulSoup
import smtplib
import ConfigParser
# Retreive user information
config = ConfigParser.ConfigParser()
config.read('config.cfg')
user = config.get('data','user')
passwor... | new = "%s&pagenum=%s" % (url,count)
msg += parse_bugtrackerpage(new,count) |
<|file_name|>unassignedbugs.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python2
import urllib2
import urllib
from BeautifulSoup import BeautifulSoup
import smtplib
import ConfigParser
# Retreive user information
config = ConfigParser.ConfigParser()
config.read('config.cfg')
user = config.get('data','user')
passwor... | parse_bugtrackerpage |
<|file_name|>_mod1_0_1_0_0_4.py<|end_file_name|><｜fim▁begin｜>name1_0_1_0_0_4_0 = None
name1_0_1_0_0_4_1 = None
name1_0_1_0_0_4_2 = None<｜fim▁hole｜>
name1_0_1_0_0_4_4 = None<｜fim▁end｜> |
name1_0_1_0_0_4_3 = None |
<|file_name|>message_format_change_test.py<|end_file_name|><｜fim▁begin｜># Copyright 2015 Confluent Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
|
<|file_name|>message_format_change_test.py<|end_file_name|><｜fim▁begin｜># Copyright 2015 Confluent Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | def __init__(self, test_context):
super(MessageFormatChangeTest, self).__init__(test_context=test_context)
def setUp(self):
self.topic = "test_topic"
self.zk = ZookeeperService(self.test_context, num_nodes=1)
self.zk.start()
# Producer and consumer
... |
<|file_name|>message_format_change_test.py<|end_file_name|><｜fim▁begin｜># Copyright 2015 Confluent Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | super(MessageFormatChangeTest, self).__init__(test_context=test_context) |
<|file_name|>message_format_change_test.py<|end_file_name|><｜fim▁begin｜># Copyright 2015 Confluent Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | self.topic = "test_topic"
self.zk = ZookeeperService(self.test_context, num_nodes=1)
self.zk.start()
# Producer and consumer
self.producer_throughput = 10000
self.num_producers = 1
self.num_consumers = 1
self.messages_per_producer = 100 |
<|file_name|>message_format_change_test.py<|end_file_name|><｜fim▁begin｜># Copyright 2015 Confluent Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | self.producer = VerifiableProducer(self.test_context, self.num_producers, self.kafka,
self.topic,
throughput=self.producer_throughput,
message_validator=is_int,
... |
<|file_name|>message_format_change_test.py<|end_file_name|><｜fim▁begin｜># Copyright 2015 Confluent Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | """ This tests performs the following checks:
The workload is a mix of 0.9.x and 0.10.x producers and consumers
that produce to and consume from a 0.10.x cluster
1. initially the topic is using message format 0.9.0
2. change the message format version for topic to 0.10.0 on the ... |
<|file_name|>message_format_change_test.py<|end_file_name|><｜fim▁begin｜># Copyright 2015 Confluent Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | self.logger.info("Third format change back to 0.9.0")
self.kafka.alter_message_format(self.topic, str(LATEST_0_9))
self.produce_and_consume(producer_version, consumer_version, "group3") |
<|file_name|>message_format_change_test.py<|end_file_name|><｜fim▁begin｜># Copyright 2015 Confluent Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | __init__ |
<|file_name|>message_format_change_test.py<|end_file_name|><｜fim▁begin｜># Copyright 2015 Confluent Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | setUp |
<|file_name|>message_format_change_test.py<|end_file_name|><｜fim▁begin｜># Copyright 2015 Confluent Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | produce_and_consume |
<|file_name|>message_format_change_test.py<|end_file_name|><｜fim▁begin｜># Copyright 2015 Confluent Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICE... | test_compatibility |
<|file_name|>schemamigration.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
# -*- coding: utf-8 -*-
import sys
INSTALLED_APPS = [
'django.contrib.contenttypes',
'django.contrib.auth',
'django.contrib.sessions',
'django.contrib.sites',
'django.contrib.admin',
'mptt',
'cms',
'menus... | ]
DATABASES = { |
<|file_name|>schemamigration.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
# -*- coding: utf-8 -*-
import sys
INSTALLED_APPS = [
'django.contrib.contenttypes',
'django.contrib.auth',
'django.contrib.sessions',
'django.contrib.sites',
'django.contrib.admin',
'mptt',
'cms',
'menus... | from django.conf import settings
from django.core.management import ManagementUtility
settings.configure(
INSTALLED_APPS=INSTALLED_APPS,
ROOT_URLCONF=ROOT_URLCONF,
DATABASES=DATABASES,
TEMPLATE_CONTEXT_PROCESSORS=TEMPLATE_CONTEXT_PROCESSORS
)
argv = list(sys.argv)
... |
<|file_name|>schemamigration.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
# -*- coding: utf-8 -*-
import sys
INSTALLED_APPS = [
'django.contrib.contenttypes',
'django.contrib.auth',
'django.contrib.sessions',
'django.contrib.sites',
'django.contrib.admin',
'mptt',
'cms',
'menus... | schemamigration() |
<|file_name|>schemamigration.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
# -*- coding: utf-8 -*-
import sys
INSTALLED_APPS = [
'django.contrib.contenttypes',
'django.contrib.auth',
'django.contrib.sessions',
'django.contrib.sites',
'django.contrib.admin',
'mptt',
'cms',
'menus... | schemamigration |
<|file_name|>sbcsgroupprober.py<|end_file_name|><｜fim▁begin｜><｜fim▁hole｜># The Initial Developer of the Original Code is
# Netscape Communications Corporation.
# Portions created by the Initial Developer are Copyright (C) 2001
# the Initial Developer. All Rights Reserved.
#
# Contributor(s):
# Mark Pilgrim - port to ... | ######################## BEGIN LICENSE BLOCK ########################
# The Original Code is Mozilla Universal charset detector code.
# |
<|file_name|>sbcsgroupprober.py<|end_file_name|><｜fim▁begin｜>######################## BEGIN LICENSE BLOCK ########################
# The Original Code is Mozilla Universal charset detector code.
#
# The Initial Developer of the Original Code is
# Netscape Communications Corporation.
# Portions created by the Initial De... | def __init__(self):
CharSetGroupProber.__init__(self)
self._mProbers = [ \
SingleByteCharSetProber(Win1251CyrillicModel),
SingleByteCharSetProber(Koi8rModel),
SingleByteCharSetProber(Latin5CyrillicModel),
SingleByteCharSetProber(MacCyrillicModel),
SingleByteCharSetProber(Ibm866Model),
SingleByteC... |
<|file_name|>sbcsgroupprober.py<|end_file_name|><｜fim▁begin｜>######################## BEGIN LICENSE BLOCK ########################
# The Original Code is Mozilla Universal charset detector code.
#
# The Initial Developer of the Original Code is
# Netscape Communications Corporation.
# Portions created by the Initial De... | CharSetGroupProber.__init__(self)
self._mProbers = [ \
SingleByteCharSetProber(Win1251CyrillicModel),
SingleByteCharSetProber(Koi8rModel),
SingleByteCharSetProber(Latin5CyrillicModel),
SingleByteCharSetProber(MacCyrillicModel),
SingleByteCharSetProber(Ibm866Model),
SingleByteCharSetProber(Ibm855Mo... |
<|file_name|>sbcsgroupprober.py<|end_file_name|><｜fim▁begin｜>######################## BEGIN LICENSE BLOCK ########################
# The Original Code is Mozilla Universal charset detector code.
#
# The Initial Developer of the Original Code is
# Netscape Communications Corporation.
# Portions created by the Initial De... | __init__ |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | missing = [ get_gene_id(x["chrom"], x["pos"], x['end'], build=build, verbose=True) for i, x in missing.iterrows() ] |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | """ adds gene symbols to variants lacking them.
Args:
de_novos: dataframe of de novo variants
build: whether to use the 'grch37' or 'grch38' build (default=GRCh37)
Returns:
pandas Series of HGNC symbols, with additional annotations for many
variants previously lacki... |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | """ open url with python libraries
Args:
url:
headers:
Returns:
tuple of http response, http response code, and http headers
"""
req = request.Request(url, headers=headers)
try:
handler = request.urlopen(req)
except HTTPError as e:
... |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | """ limit ensembl requests to one per 0.067 s
"""
global PREV_TIME
diff = time.time() - PREV_TIME
if diff < rate_limit:
time.sleep(rate_limit - diff)
PREV_TIME = time.time() |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | """find the hgnc symbol overlapping a variant position
Args:
variant: data frame or list for a variant, containing columns named
"chrom", "start_pos", and "end_pos" for a single variant
build: genome build to find consequences on
verbose: flag indicating whether to print... |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | response = response.decode("utf-8") |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | time.sleep(rate_limit - diff) |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | raise ValueError("too many attempts, figure out why its failing") |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | print("chr{0}:{1} {2}".format(chrom, start_pos, ext)) |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | if "retry-after" in requested_headers:
time.sleep(float(requested_headers["retry-after"]))
elif "x-ratelimit-reset" in requested_headers:
time.sleep(int(requested_headers["x-ratelimit-reset"]))
return get_gene_id(chrom, start_pos, end_pos, build, verbose, attempts) |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | time.sleep(float(requested_headers["retry-after"])) |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | time.sleep(int(requested_headers["x-ratelimit-reset"])) |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | time.sleep(30)
return get_gene_id(chrom, start_pos, end_pos, build, verbose, attempts) |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | raise ValueError('Invalid Ensembl response: {0}.\nSubmitted '
'URL was: {1}{2}\nheaders: {3}\nresponse: {4}'.format(status_code,
base_url, ext, requested_headers, response)) |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | return json_text[0]["external_name"] |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | fix_missing_gene_symbols |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | open_url |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | rate_limit_requests |
<|file_name|>missing_symbols.py<|end_file_name|><｜fim▁begin｜>"""
Copyright (c) 2016 Genome Research Ltd.
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limi... | get_gene_id |
<|file_name|>datasources.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""
Created on Fri Feb 24 12:49:36 2017
@author: drsmith
"""
import os
from .globals import FdpError
def canonicalMachineName(machine=''):
aliases = {'nstxu': ['nstx', 'nstxu', 'nstx-u'],
'diii... | 'nstxlogs.sybase_login')
} |
<|file_name|>datasources.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""
Created on Fri Feb 24 12:49:36 2017
@author: drsmith
"""
import os
from .globals import FdpError
def canonicalMachineName(machine=''):
<|fim_middle|>
MDS_SERVERS = {
'nstxu': {'hostname': 'skylark.... | aliases = {'nstxu': ['nstx', 'nstxu', 'nstx-u'],
'diiid': ['diiid', 'diii-d', 'd3d'],
'cmod': ['cmod', 'c-mod']}
for key, value in aliases.items():
if machine.lower() in value:
return key
# invalid machine name
raise FdpError('"{}" is not a valid machine... |
<|file_name|>datasources.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""
Created on Fri Feb 24 12:49:36 2017
@author: drsmith
"""
import os
from .globals import FdpError
def canonicalMachineName(machine=''):
aliases = {'nstxu': ['nstx', 'nstxu', 'nstx-u'],
'diii... | return key |
<|file_name|>datasources.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python2
# -*- coding: utf-8 -*-
"""
Created on Fri Feb 24 12:49:36 2017
@author: drsmith
"""
import os
from .globals import FdpError
def <|fim_middle|>(machine=''):
aliases = {'nstxu': ['nstx', 'nstxu', 'nstx-u'],
'diiid': ['... | canonicalMachineName |
<|file_name|>oracle_element.py<|end_file_name|><｜fim▁begin｜># Copyright 2021 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
#... | observation is asynchronous. This argument is optional and defaults to |
<|file_name|>oracle_element.py<|end_file_name|><｜fim▁begin｜># Copyright 2021 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
#... | """A Reach Oracle configuration class.
Attributes:
reach_name: The name of the Oracle.
task_code: The task code string.
intent: The intention of the task. This agument is optional and defaults to
an empty string.
success_type: The type of success. This argument is optional and defaults
... |
<|file_name|>hash_check.py<|end_file_name|><｜fim▁begin｜><｜fim▁hole｜>from flask_bcrypt import generate_password_hash
# Change the number of rounds (second argument) until it takes between
# 0.25 and 0.5 seconds to run.
generate_password_hash('password1', 8)<｜fim▁end｜> | |
<|file_name|>echem_paperplots.py<|end_file_name|><｜fim▁begin｜>import time, copy
import os, os.path
import sys
import numpy
from PyQt4.QtCore import *
from PyQt4.QtGui import *
from scipy import optimize
from echem_plate_ui import *
from echem_plate_math import *
import pickle
p1='C:/Users/Gregoire/Documents/CaltechWor... | |
<|file_name|>running_mpi_executables.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
__copyright__ = "Copyright 2013-2014, http://radical.rutgers.edu"
__license__ = "MIT"
import sys
import radical.pilot as rp
# READ: The RADICAL-Pilot documentation:
# http://radicalpilot.readthedocs.org/en/latest
#
# Try ... | print "[Callback]: ComputeUnit '%s' state: %s." % (unit.uid, state)
if state == rp.FAILED:
sys.exit (1) |
<|file_name|>running_mpi_executables.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
__copyright__ = "Copyright 2013-2014, http://radical.rutgers.edu"
__license__ = "MIT"
import sys
import radical.pilot as rp
# READ: The RADICAL-Pilot documentation:
# http://radicalpilot.readthedocs.org/en/latest
#
# Try ... | """ this callback is invoked on all pilot state changes """
print "[Callback]: ComputePilot '%s' state: %s." % (pilot.uid, state)
if state == rp.FAILED:
sys.exit (1) |
<|file_name|>running_mpi_executables.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
__copyright__ = "Copyright 2013-2014, http://radical.rutgers.edu"
__license__ = "MIT"
import sys
import radical.pilot as rp
# READ: The RADICAL-Pilot documentation:
# http://radicalpilot.readthedocs.org/en/latest
#
# Try ... | """ this callback is invoked on all unit state changes """
print "[Callback]: ComputeUnit '%s' state: %s." % (unit.uid, state)
if state == rp.FAILED:
sys.exit (1) |
<|file_name|>running_mpi_executables.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
__copyright__ = "Copyright 2013-2014, http://radical.rutgers.edu"
__license__ = "MIT"
import sys
import radical.pilot as rp
# READ: The RADICAL-Pilot documentation:
# http://radicalpilot.readthedocs.org/en/latest
#
# Try ... | sys.exit (1) |
<|file_name|>running_mpi_executables.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
__copyright__ = "Copyright 2013-2014, http://radical.rutgers.edu"
__license__ = "MIT"
import sys
import radical.pilot as rp
# READ: The RADICAL-Pilot documentation:
# http://radicalpilot.readthedocs.org/en/latest
#
# Try ... | sys.exit (1) |
<|file_name|>running_mpi_executables.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
__copyright__ = "Copyright 2013-2014, http://radical.rutgers.edu"
__license__ = "MIT"
import sys
import radical.pilot as rp
# READ: The RADICAL-Pilot documentation:
# http://radicalpilot.readthedocs.org/en/latest
#
# Try ... | if len(sys.argv) > 1:
session_name = sys.argv[1]
else:
session_name = None
# Create a new session. No need to try/except this: if session creation
# fails, there is not much we can do anyways...
session = rp.Session(name=session_name)
print "session id: %s" % session.uid
# ... |
<|file_name|>running_mpi_executables.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
__copyright__ = "Copyright 2013-2014, http://radical.rutgers.edu"
__license__ = "MIT"
import sys
import radical.pilot as rp
# READ: The RADICAL-Pilot documentation:
# http://radicalpilot.readthedocs.org/en/latest
#
# Try ... | session_name = sys.argv[1] |
<|file_name|>running_mpi_executables.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
__copyright__ = "Copyright 2013-2014, http://radical.rutgers.edu"
__license__ = "MIT"
import sys
import radical.pilot as rp
# READ: The RADICAL-Pilot documentation:
# http://radicalpilot.readthedocs.org/en/latest
#
# Try ... | session_name = None |
<|file_name|>running_mpi_executables.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
__copyright__ = "Copyright 2013-2014, http://radical.rutgers.edu"
__license__ = "MIT"
import sys
import radical.pilot as rp
# READ: The RADICAL-Pilot documentation:
# http://radicalpilot.readthedocs.org/en/latest
#
# Try ... | units = [units] |
<|file_name|>running_mpi_executables.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
__copyright__ = "Copyright 2013-2014, http://radical.rutgers.edu"
__license__ = "MIT"
import sys
import radical.pilot as rp
# READ: The RADICAL-Pilot documentation:
# http://radicalpilot.readthedocs.org/en/latest
#
# Try ... | pilot_state_cb |
<|file_name|>running_mpi_executables.py<|end_file_name|><｜fim▁begin｜>#!/usr/bin/env python
__copyright__ = "Copyright 2013-2014, http://radical.rutgers.edu"
__license__ = "MIT"
import sys
import radical.pilot as rp
# READ: The RADICAL-Pilot documentation:
# http://radicalpilot.readthedocs.org/en/latest
#
# Try ... | unit_state_cb |
<|file_name|>test_reference_bind.py<|end_file_name|><｜fim▁begin｜># Copyright 2017 Virgil Dupras
#
# This software is licensed under the "GPLv3" License as described in the "LICENSE" file,
# which should be included with this package. The terms are also available at
# http://www.gnu.org/licenses/gpl-3.0.html
from datet... |
def test_typical_situation():
# Verify that ReferenceBind.match_entries() return expected entried in a typical situation |
<|file_name|>test_reference_bind.py<|end_file_name|><｜fim▁begin｜># Copyright 2017 Virgil Dupras
#
# This software is licensed under the "GPLv3" License as described in the "LICENSE" file,
# which should be included with this package. The terms are also available at
# http://www.gnu.org/licenses/gpl-3.0.html
from datet... | txn = Transaction(entry_date, description=description, amount=Amount(1, USD))
split = txn.splits[0]
split.reference = reference
return Entry(split, split.amount, 0, 0, 0) |
<|file_name|>test_reference_bind.py<|end_file_name|><｜fim▁begin｜># Copyright 2017 Virgil Dupras
#
# This software is licensed under the "GPLv3" License as described in the "LICENSE" file,
# which should be included with this package. The terms are also available at
# http://www.gnu.org/licenses/gpl-3.0.html
from datet... | plugin = ReferenceBind()
DATE = date(2017, 10, 10)
existing_entries = list(starmap(create_entry, [
(DATE, 'e1', 'ref1'),
(DATE, 'e2', 'ref2'),
]))
imported_entries = list(starmap(create_entry, [
(DATE, 'i1', 'ref1'),
(DATE, 'i2', 'ref3'),
]))
matches = plugin.... |
<|file_name|>test_reference_bind.py<|end_file_name|><｜fim▁begin｜># Copyright 2017 Virgil Dupras
#
# This software is licensed under the "GPLv3" License as described in the "LICENSE" file,
# which should be included with this package. The terms are also available at
# http://www.gnu.org/licenses/gpl-3.0.html
from datet... | plugin = ReferenceBind()
DATE = date(2017, 10, 10)
existing = create_entry(DATE, 'e1', 'ref1')
existing.split.reconciliation_date = DATE
imported = create_entry(DATE, 'i1', 'ref1')
matches = plugin.match_entries(None, None, None, [existing], [imported])
EXPECTED = [('e1', 'i1', False, 0.99)]... |
<|file_name|>test_reference_bind.py<|end_file_name|><｜fim▁begin｜># Copyright 2017 Virgil Dupras
#
# This software is licensed under the "GPLv3" License as described in the "LICENSE" file,
# which should be included with this package. The terms are also available at
# http://www.gnu.org/licenses/gpl-3.0.html
from datet... | plugin = ReferenceBind()
DATE = date(2017, 10, 10)
existing_entries = list(starmap(create_entry, [
(DATE, 'e1', 'ref1'),
]))
imported_entries = list(starmap(create_entry, [
(DATE, 'i1', 'ref1'),
(DATE, 'i2', 'ref1'),
]))
matches = plugin.match_entries(None, None, None... |
<|file_name|>test_reference_bind.py<|end_file_name|><｜fim▁begin｜># Copyright 2017 Virgil Dupras
#
# This software is licensed under the "GPLv3" License as described in the "LICENSE" file,
# which should be included with this package. The terms are also available at
# http://www.gnu.org/licenses/gpl-3.0.html
from datet... | create_entry |
<|file_name|>test_reference_bind.py<|end_file_name|><｜fim▁begin｜># Copyright 2017 Virgil Dupras
#
# This software is licensed under the "GPLv3" License as described in the "LICENSE" file,
# which should be included with this package. The terms are also available at
# http://www.gnu.org/licenses/gpl-3.0.html
from datet... | test_typical_situation |
<|file_name|>test_reference_bind.py<|end_file_name|><｜fim▁begin｜># Copyright 2017 Virgil Dupras
#
# This software is licensed under the "GPLv3" License as described in the "LICENSE" file,
# which should be included with this package. The terms are also available at
# http://www.gnu.org/licenses/gpl-3.0.html
from datet... | test_reconciled_entry |
<|file_name|>test_reference_bind.py<|end_file_name|><｜fim▁begin｜># Copyright 2017 Virgil Dupras
#
# This software is licensed under the "GPLv3" License as described in the "LICENSE" file,
# which should be included with this package. The terms are also available at
# http://www.gnu.org/licenses/gpl-3.0.html
from datet... | test_match_first_only |
<|file_name|>fm_demod.py<|end_file_name|><｜fim▁begin｜>#
# Copyright 2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; e... | @type sample_rate: integer
@param audio_decim: input to output decimation rate
@type audio_decim: integer
""" |
<|file_name|>fm_demod.py<|end_file_name|><｜fim▁begin｜>#
# Copyright 2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; e... | """
Generalized FM demodulation block with deemphasis and audio
filtering.
This block demodulates a band-limited, complex down-converted FM
channel into the the original baseband signal, optionally applying
deemphasis. Low pass filtering is done on the resultant signal. It
produces an out... |
<|file_name|>fm_demod.py<|end_file_name|><｜fim▁begin｜>#
# Copyright 2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; e... | gr.hier_block2.__init__(self, "fm_demod_cf",
gr.io_signature(1, 1, gr.sizeof_gr_complex), # Input signature
gr.io_signature(1, 1, gr.sizeof_float)) # Output signature
k = channel_rate/(2*pi*deviation)
QUAD = gr.quadrature_demod_cf(k)
audio_taps = optfir.low_pass(gain, # Filter gain
... |
<|file_name|>fm_demod.py<|end_file_name|><｜fim▁begin｜>#
# Copyright 2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; e... | """
NBFM demodulation block, 20 KHz channels
This block demodulates a complex, downconverted, narrowband FM
channel conforming to 20K0F3E emission standards, outputting
floats in the range [-1.0, +1.0].
@param sample_rate: incoming sample rate of the FM baseband
@type sample_rate: in... |
<|file_name|>fm_demod.py<|end_file_name|><｜fim▁begin｜>#
# Copyright 2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; e... | fm_demod_cf.__init__(self, channel_rate, audio_decim,
5000, # Deviation
3000, # Audio passband frequency
4500) # Audio stopband frequency |
<|file_name|>fm_demod.py<|end_file_name|><｜fim▁begin｜>#
# Copyright 2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; e... | """
WFM demodulation block, mono.
This block demodulates a complex, downconverted, wideband FM
channel conforming to 200KF3E emission standards, outputting
floats in the range [-1.0, +1.0].
@param sample_rate: incoming sample rate of the FM baseband
@type sample_rate: integer
@p... |
<|file_name|>fm_demod.py<|end_file_name|><｜fim▁begin｜>#
# Copyright 2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; e... | fm_demod_cf.__init__(self, channel_rate, audio_decim,
75000, # Deviation
15000, # Audio passband
16000, # Audio stopband
20.0) # Audio gain |
<|file_name|>fm_demod.py<|end_file_name|><｜fim▁begin｜>#
# Copyright 2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; e... | DEEMPH = fm_deemph(channel_rate, tau)
self.connect(self, QUAD, DEEMPH, LPF, self) |
<|file_name|>fm_demod.py<|end_file_name|><｜fim▁begin｜>#
# Copyright 2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; e... | self.connect(self, QUAD, LPF, self) |
<|file_name|>fm_demod.py<|end_file_name|><｜fim▁begin｜>#
# Copyright 2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; e... | __init__ |
<|file_name|>fm_demod.py<|end_file_name|><｜fim▁begin｜>#
# Copyright 2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; e... | __init__ |
<|file_name|>fm_demod.py<|end_file_name|><｜fim▁begin｜>#
# Copyright 2006,2007 Free Software Foundation, Inc.
#
# This file is part of GNU Radio
#
# GNU Radio is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; e... | __init__ |
<|file_name|>__init__.py<|end_file_name|><｜fim▁begin｜>from click_plugins import with_plugins
from pkg_resources import iter_entry_points
import click
<｜fim▁hole｜> context_settings=dict(help_option_names=['-h', '--help']))
@click.version_option(message='%(version)s')
def main():
pass<｜fim▁end｜> |
@with_plugins(iter_entry_points('girder.cli_plugins'))
@click.group(help='Girder: data management platform for the web.', |
<|file_name|>__init__.py<|end_file_name|><｜fim▁begin｜>from click_plugins import with_plugins
from pkg_resources import iter_entry_points
import click
@with_plugins(iter_entry_points('girder.cli_plugins'))
@click.group(help='Girder: data management platform for the web.',
context_settings=dict(help_option... | pass |
<|file_name|>__init__.py<|end_file_name|><｜fim▁begin｜>from click_plugins import with_plugins
from pkg_resources import iter_entry_points
import click
@with_plugins(iter_entry_points('girder.cli_plugins'))
@click.group(help='Girder: data management platform for the web.',
context_settings=dict(help_option... | main |
<|file_name|>testkmeans.py<|end_file_name|><｜fim▁begin｜>"""Run tests for the kmeans portion of the kmeans module"""
import kmeans.kmeans.kmeans as kmeans
import numpy as np
import random
def test_1dim_distance():
"""See if this contraption works in 1 dimension"""
num1 = random.random()
num2 = random.rand... |
def test_random_centroid_dimensions():
"""ensure the correct number of dimensions""" |
<|file_name|>testkmeans.py<|end_file_name|><｜fim▁begin｜>"""Run tests for the kmeans portion of the kmeans module"""
import kmeans.kmeans.kmeans as kmeans
import numpy as np
import random
def test_1dim_distance():
<|fim_middle|>
def test_ndim_distance():
"""Test to see if changing val by 1 does what it oug... | """See if this contraption works in 1 dimension"""
num1 = random.random()
num2 = random.random()
assert kmeans.ndim_euclidean_distance(num1, num2) == abs(num1-num2) |
<|file_name|>testkmeans.py<|end_file_name|><｜fim▁begin｜>"""Run tests for the kmeans portion of the kmeans module"""
import kmeans.kmeans.kmeans as kmeans
import numpy as np
import random
def test_1dim_distance():
"""See if this contraption works in 1 dimension"""
num1 = random.random()
num2 = random.rand... | """Test to see if changing val by 1 does what it ought to do
convert to float to integer because floating arithmetic makes testing
analytic functions a mess"""
rand = random.random
point1 = [rand(), rand(), rand(), rand(), rand(), rand()]
point2 = [point1[0]+1] + point1[1:] # just shift x to the... |
<|file_name|>testkmeans.py<|end_file_name|><｜fim▁begin｜>"""Run tests for the kmeans portion of the kmeans module"""
import kmeans.kmeans.kmeans as kmeans
import numpy as np
import random
def test_1dim_distance():
"""See if this contraption works in 1 dimension"""
num1 = random.random()
num2 = random.rand... | """ensure the iteration ceiling works"""
# assert kmeans.should_iter([], [], iterations=29) == True
assert kmeans.should_iter([], [], iterations=30) == False
assert kmeans.should_iter([], [], iterations=31) == False |
<|file_name|>testkmeans.py<|end_file_name|><｜fim▁begin｜>"""Run tests for the kmeans portion of the kmeans module"""
import kmeans.kmeans.kmeans as kmeans
import numpy as np
import random
def test_1dim_distance():
"""See if this contraption works in 1 dimension"""
num1 = random.random()
num2 = random.rand... | """ensure the correct number of dimensions"""
dimensions = random.randrange(1, 100)
k = random.randrange(1, 100)
centroids = kmeans.random_centroids(k, dimensions)
for centroid in centroids:
assert len(centroid) == dimensions |
<|file_name|>testkmeans.py<|end_file_name|><｜fim▁begin｜>"""Run tests for the kmeans portion of the kmeans module"""
import kmeans.kmeans.kmeans as kmeans
import numpy as np
import random
def test_1dim_distance():
"""See if this contraption works in 1 dimension"""
num1 = random.random()
num2 = random.rand... | """ensure that the average across each dimension is returned"""
new_centroid = kmeans.iterated_centroid([[1, 1, 1], [2, 2, 2]],\
[[100, 200, 300]], [(0, 0), (1, 0)])
np.testing.assert_allclose(new_centroid, np.array([[1.5, 1.5, 1.5]]),\
rtol=1e-5) |
<|file_name|>testkmeans.py<|end_file_name|><｜fim▁begin｜>"""Run tests for the kmeans portion of the kmeans module"""
import kmeans.kmeans.kmeans as kmeans
import numpy as np
import random
def <|fim_middle|>():
"""See if this contraption works in 1 dimension"""
num1 = random.random()
num2 = random.random()... | test_1dim_distance |
<|file_name|>testkmeans.py<|end_file_name|><｜fim▁begin｜>"""Run tests for the kmeans portion of the kmeans module"""
import kmeans.kmeans.kmeans as kmeans
import numpy as np
import random
def test_1dim_distance():
"""See if this contraption works in 1 dimension"""
num1 = random.random()
num2 = random.rand... | test_ndim_distance |
<|file_name|>testkmeans.py<|end_file_name|><｜fim▁begin｜>"""Run tests for the kmeans portion of the kmeans module"""
import kmeans.kmeans.kmeans as kmeans
import numpy as np
import random
def test_1dim_distance():
"""See if this contraption works in 1 dimension"""
num1 = random.random()
num2 = random.rand... | test_maxiters |
<|file_name|>testkmeans.py<|end_file_name|><｜fim▁begin｜>"""Run tests for the kmeans portion of the kmeans module"""
import kmeans.kmeans.kmeans as kmeans
import numpy as np
import random
def test_1dim_distance():
"""See if this contraption works in 1 dimension"""
num1 = random.random()
num2 = random.rand... | test_random_centroid_dimensions |
<|file_name|>testkmeans.py<|end_file_name|><｜fim▁begin｜>"""Run tests for the kmeans portion of the kmeans module"""
import kmeans.kmeans.kmeans as kmeans
import numpy as np
import random
def test_1dim_distance():
"""See if this contraption works in 1 dimension"""
num1 = random.random()
num2 = random.rand... | test_iterated_centroid |
<|file_name|>src.py<|end_file_name|><｜fim▁begin｜>from itertools import permutations
import re
def create_formula(combination,numbers):
formula = ""
index = 0
for op in combination:
formula += str(numbers[index]) + op
index += 1
formula += numbers[index]
return formula
'''
Unnece... | for formula in countdown(line.split(" ")):
out.write(formula)
out.write("\n")
out.write("\n\n") |
<|file_name|>src.py<|end_file_name|><｜fim▁begin｜>from itertools import permutations
import re
def create_formula(combination,numbers):
<|fim_middle|>
'''
Unnecessary Funtion
'''
def evaluate(form):
result = 0
for index in range(len(form)):
if form[index] == "+":
result += int(form[... | formula = ""
index = 0
for op in combination:
formula += str(numbers[index]) + op
index += 1
formula += numbers[index]
return formula |
<|file_name|>src.py<|end_file_name|><｜fim▁begin｜>from itertools import permutations
import re
def create_formula(combination,numbers):
formula = ""
index = 0
for op in combination:
formula += str(numbers[index]) + op
index += 1
formula += numbers[index]
return formula
'''
Unnece... | result = 0
for index in range(len(form)):
if form[index] == "+":
result += int(form[index+1])
index += 1
elif form[index] == "-":
result -= int(form[index+1])
index += 1
elif form[index] == "*":
result *= int(form[index+1])
... |
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