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robinandeer/puzzle | puzzle/server/blueprints/public/views.py | gene_list | def gene_list(list_id=None):
"""Display or add a gene list."""
all_case_ids = [case.case_id for case in app.db.cases()]
if list_id:
genelist_obj = app.db.gene_list(list_id)
case_ids = [case.case_id for case in app.db.cases()
if case not in genelist_obj.cases]
if genelist_obj is None:
return abort(404, "gene list not found: {}".format(list_id))
if 'download' in request.args:
response = make_response('\n'.join(genelist_obj.gene_ids))
filename = secure_filename("{}.txt".format(genelist_obj.list_id))
header = "attachment; filename={}".format(filename)
response.headers['Content-Disposition'] = header
return response
if request.method == 'POST':
if list_id:
# link a case to the gene list
case_ids = request.form.getlist('case_id')
for case_id in case_ids:
case_obj = app.db.case(case_id)
if case_obj not in genelist_obj.cases:
genelist_obj.cases.append(case_obj)
app.db.save()
else:
# upload a new gene list
req_file = request.files['file']
new_listid = (request.form['list_id'] or
secure_filename(req_file.filename))
if app.db.gene_list(new_listid):
return abort(500, 'Please provide a unique list name')
if not req_file:
return abort(500, 'Please provide a file for upload')
gene_ids = [line for line in req_file.stream
if not line.startswith('#')]
genelist_obj = app.db.add_genelist(new_listid, gene_ids)
case_ids = all_case_ids
return render_template('gene_list.html', gene_list=genelist_obj,
case_ids=case_ids) | python | def gene_list(list_id=None):
"""Display or add a gene list."""
all_case_ids = [case.case_id for case in app.db.cases()]
if list_id:
genelist_obj = app.db.gene_list(list_id)
case_ids = [case.case_id for case in app.db.cases()
if case not in genelist_obj.cases]
if genelist_obj is None:
return abort(404, "gene list not found: {}".format(list_id))
if 'download' in request.args:
response = make_response('\n'.join(genelist_obj.gene_ids))
filename = secure_filename("{}.txt".format(genelist_obj.list_id))
header = "attachment; filename={}".format(filename)
response.headers['Content-Disposition'] = header
return response
if request.method == 'POST':
if list_id:
# link a case to the gene list
case_ids = request.form.getlist('case_id')
for case_id in case_ids:
case_obj = app.db.case(case_id)
if case_obj not in genelist_obj.cases:
genelist_obj.cases.append(case_obj)
app.db.save()
else:
# upload a new gene list
req_file = request.files['file']
new_listid = (request.form['list_id'] or
secure_filename(req_file.filename))
if app.db.gene_list(new_listid):
return abort(500, 'Please provide a unique list name')
if not req_file:
return abort(500, 'Please provide a file for upload')
gene_ids = [line for line in req_file.stream
if not line.startswith('#')]
genelist_obj = app.db.add_genelist(new_listid, gene_ids)
case_ids = all_case_ids
return render_template('gene_list.html', gene_list=genelist_obj,
case_ids=case_ids) | [
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robinandeer/puzzle | puzzle/server/blueprints/public/views.py | delete_genelist | def delete_genelist(list_id, case_id=None):
"""Delete a whole gene list with links to cases or a link."""
if case_id:
# unlink a case from a gene list
case_obj = app.db.case(case_id)
app.db.remove_genelist(list_id, case_obj=case_obj)
return redirect(request.referrer)
else:
# remove the whole gene list
app.db.remove_genelist(list_id)
return redirect(url_for('.index')) | python | def delete_genelist(list_id, case_id=None):
"""Delete a whole gene list with links to cases or a link."""
if case_id:
# unlink a case from a gene list
case_obj = app.db.case(case_id)
app.db.remove_genelist(list_id, case_obj=case_obj)
return redirect(request.referrer)
else:
# remove the whole gene list
app.db.remove_genelist(list_id)
return redirect(url_for('.index')) | [
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robinandeer/puzzle | puzzle/server/blueprints/public/views.py | resources | def resources():
"""Upload a new resource for an individual."""
ind_id = request.form['ind_id']
upload_dir = os.path.abspath(app.config['UPLOAD_DIR'])
req_file = request.files['file']
filename = secure_filename(req_file.filename)
file_path = os.path.join(upload_dir, filename)
name = request.form['name'] or filename
req_file.save(file_path)
ind_obj = app.db.individual(ind_id)
app.db.add_resource(name, file_path, ind_obj)
return redirect(request.referrer) | python | def resources():
"""Upload a new resource for an individual."""
ind_id = request.form['ind_id']
upload_dir = os.path.abspath(app.config['UPLOAD_DIR'])
req_file = request.files['file']
filename = secure_filename(req_file.filename)
file_path = os.path.join(upload_dir, filename)
name = request.form['name'] or filename
req_file.save(file_path)
ind_obj = app.db.individual(ind_id)
app.db.add_resource(name, file_path, ind_obj)
return redirect(request.referrer) | [
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robinandeer/puzzle | puzzle/server/blueprints/public/views.py | resource | def resource(resource_id):
"""Show a resource."""
resource_obj = app.db.resource(resource_id)
if 'raw' in request.args:
return send_from_directory(os.path.dirname(resource_obj.path),
os.path.basename(resource_obj.path))
return render_template('resource.html', resource=resource_obj) | python | def resource(resource_id):
"""Show a resource."""
resource_obj = app.db.resource(resource_id)
if 'raw' in request.args:
return send_from_directory(os.path.dirname(resource_obj.path),
os.path.basename(resource_obj.path))
return render_template('resource.html', resource=resource_obj) | [
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robinandeer/puzzle | puzzle/server/blueprints/public/views.py | comments | def comments(case_id):
"""Upload a new comment."""
text = request.form['text']
variant_id = request.form.get('variant_id')
username = request.form.get('username')
case_obj = app.db.case(case_id)
app.db.add_comment(case_obj, text, variant_id=variant_id, username=username)
return redirect(request.referrer) | python | def comments(case_id):
"""Upload a new comment."""
text = request.form['text']
variant_id = request.form.get('variant_id')
username = request.form.get('username')
case_obj = app.db.case(case_id)
app.db.add_comment(case_obj, text, variant_id=variant_id, username=username)
return redirect(request.referrer) | [
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robinandeer/puzzle | puzzle/server/blueprints/public/views.py | individual | def individual(ind_id):
"""Show details for a specific individual."""
individual_obj = app.db.individual(ind_id)
return render_template('individual.html', individual=individual_obj) | python | def individual(ind_id):
"""Show details for a specific individual."""
individual_obj = app.db.individual(ind_id)
return render_template('individual.html', individual=individual_obj) | [
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robinandeer/puzzle | puzzle/server/blueprints/public/views.py | synopsis | def synopsis(case_id):
"""Update the case synopsis."""
text = request.form['text']
case_obj = app.db.case(case_id)
app.db.update_synopsis(case_obj, text)
return redirect(request.referrer) | python | def synopsis(case_id):
"""Update the case synopsis."""
text = request.form['text']
case_obj = app.db.case(case_id)
app.db.update_synopsis(case_obj, text)
return redirect(request.referrer) | [
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robinandeer/puzzle | puzzle/server/blueprints/public/views.py | add_case | def add_case():
"""Make a new case out of a list of individuals."""
ind_ids = request.form.getlist('ind_id')
case_id = request.form['case_id']
source = request.form['source']
variant_type = request.form['type']
if len(ind_ids) == 0:
return abort(400, "must add at least one member of case")
# only GEMINI supported
new_case = Case(case_id=case_id, name=case_id, variant_source=source,
variant_type=variant_type, variant_mode='gemini')
# Add individuals to the correct case
for ind_id in ind_ids:
ind_obj = app.db.individual(ind_id)
new_case.individuals.append(ind_obj)
app.db.session.add(new_case)
app.db.save()
return redirect(url_for('.case', case_id=new_case.name)) | python | def add_case():
"""Make a new case out of a list of individuals."""
ind_ids = request.form.getlist('ind_id')
case_id = request.form['case_id']
source = request.form['source']
variant_type = request.form['type']
if len(ind_ids) == 0:
return abort(400, "must add at least one member of case")
# only GEMINI supported
new_case = Case(case_id=case_id, name=case_id, variant_source=source,
variant_type=variant_type, variant_mode='gemini')
# Add individuals to the correct case
for ind_id in ind_ids:
ind_obj = app.db.individual(ind_id)
new_case.individuals.append(ind_obj)
app.db.session.add(new_case)
app.db.save()
return redirect(url_for('.case', case_id=new_case.name)) | [
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eleme/meepo | meepo/sub/dummy.py | print_sub | def print_sub(tables):
"""Dummy print sub.
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"""
logger = logging.getLogger("meepo.sub.print_sub")
logger.info("print_sub tables: %s" % ", ".join(tables))
if not isinstance(tables, (list, set)):
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events = ("%s_%s" % (tb, action) for tb, action in
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for event in events:
signal(event).connect(
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"""Dummy print sub.
:param tables: print events of tables.
"""
logger = logging.getLogger("meepo.sub.print_sub")
logger.info("print_sub tables: %s" % ", ".join(tables))
if not isinstance(tables, (list, set)):
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events = ("%s_%s" % (tb, action) for tb, action in
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for event in events:
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okeuday/erlang_py | erlang.py | binary_to_term | def binary_to_term(data):
"""
Decode Erlang terms within binary data into Python types
"""
if not isinstance(data, bytes):
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size = len(data)
if size <= 1:
raise ParseException('null input')
if b_ord(data[0]) != _TAG_VERSION:
raise ParseException('invalid version')
try:
i, term = _binary_to_term(1, data)
if i != size:
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return term
except struct.error:
raise ParseException('missing data')
except IndexError:
raise ParseException('missing data') | python | def binary_to_term(data):
"""
Decode Erlang terms within binary data into Python types
"""
if not isinstance(data, bytes):
raise ParseException('not bytes input')
size = len(data)
if size <= 1:
raise ParseException('null input')
if b_ord(data[0]) != _TAG_VERSION:
raise ParseException('invalid version')
try:
i, term = _binary_to_term(1, data)
if i != size:
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return term
except struct.error:
raise ParseException('missing data')
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okeuday/erlang_py | erlang.py | term_to_binary | def term_to_binary(term, compressed=False):
"""
Encode Python types into Erlang terms in binary data
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data_uncompressed = _term_to_binary(term)
if compressed is False:
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data_compressed = zlib.compress(data_uncompressed, compressed)
size_uncompressed = len(data_uncompressed)
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return (
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"""
Encode Python types into Erlang terms in binary data
"""
data_uncompressed = _term_to_binary(term)
if compressed is False:
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size_uncompressed = len(data_uncompressed)
if size_uncompressed > 4294967295:
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TiagoBras/audio-clip-extractor | audioclipextractor/parser.py | SpecsParser._parseLine | def _parseLine(cls, line):
"""Parsers a single line of text and returns an AudioClipSpec
Line format:
<number> <number> [<text>]
Returns: list(AudioClipSpec) or None
"""
r = cls._PROG.match(line)
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"""
r = cls._PROG.match(line)
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d = r.groupdict()
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raise ValueError("Error: parsing '%s'. Correct: \"<number> <number> [<text>]\"" % line)
return AudioClipSpec(d['begin'], d['end'], d['text'].strip()) | [
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Gawen/pytun | pytun.py | Tunnel.mode_name | def mode_name(self):
""" Returns the tunnel mode's name, for printing purpose. """
for name, id in self.MODES.iteritems():
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return name | python | def mode_name(self):
""" Returns the tunnel mode's name, for printing purpose. """
for name, id in self.MODES.iteritems():
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return name | [
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Gawen/pytun | pytun.py | Tunnel.open | def open(self):
""" Create the tunnel.
If the tunnel is already opened, the function will
raised an AlreadyOpened exception.
"""
if self.fd is not None:
raise self.AlreadyOpened()
logger.debug("Opening %s..." % (TUN_KO_PATH, ))
self.fd = os.open(TUN_KO_PATH, os.O_RDWR)
logger.debug("Opening %s tunnel '%s'..." % (self.mode_name.upper(), self.pattern, ))
try:
ret = fcntl.ioctl(self.fd, self.TUNSETIFF, struct.pack("16sH", self.pattern, self.mode | self.no_pi))
except IOError, e:
if e.errno == 1:
logger.error("Cannot open a %s tunnel because the operation is not permitted." % (self.mode_name.upper(), ))
raise self.NotPermitted()
raise
self.name = ret[:16].strip("\x00")
logger.info("Tunnel '%s' opened." % (self.name, )) | python | def open(self):
""" Create the tunnel.
If the tunnel is already opened, the function will
raised an AlreadyOpened exception.
"""
if self.fd is not None:
raise self.AlreadyOpened()
logger.debug("Opening %s..." % (TUN_KO_PATH, ))
self.fd = os.open(TUN_KO_PATH, os.O_RDWR)
logger.debug("Opening %s tunnel '%s'..." % (self.mode_name.upper(), self.pattern, ))
try:
ret = fcntl.ioctl(self.fd, self.TUNSETIFF, struct.pack("16sH", self.pattern, self.mode | self.no_pi))
except IOError, e:
if e.errno == 1:
logger.error("Cannot open a %s tunnel because the operation is not permitted." % (self.mode_name.upper(), ))
raise self.NotPermitted()
raise
self.name = ret[:16].strip("\x00")
logger.info("Tunnel '%s' opened." % (self.name, )) | [
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""" Close the tunnel.
If the tunnel is already closed or never opened,
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"""
if self.fd is None:
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os.close(self.fd)
self.fd = None
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""" Close the tunnel.
If the tunnel is already closed or never opened,
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"""
if self.fd is None:
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logger.debug("Closing tunnel '%s'..." % (self.name or "", ))
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Gawen/pytun | pytun.py | Tunnel.recv | def recv(self, size = None):
""" Receive a buffer. The default size is 1500, the
classical MTU.
"""
size = size if size is not None else 1500
return os.read(self.fd, size) | python | def recv(self, size = None):
""" Receive a buffer. The default size is 1500, the
classical MTU.
"""
size = size if size is not None else 1500
return os.read(self.fd, size) | [
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Shinichi-Nakagawa/pitchpx | pitchpx/mlbam.py | MlbAm.download | def download(self):
"""
MLBAM dataset download
"""
p = Pool()
p.map(self._download, self.days) | python | def download(self):
"""
MLBAM dataset download
"""
p = Pool()
p.map(self._download, self.days) | [
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ldomic/lintools | lintools/analysis/salt_bridges.py | SaltBridges.count_by_type | def count_by_type(self):
"""Count how many times each individual salt bridge occured throughout the simulation.
Returns numpy array."""
saltbridges = defaultdict(int)
for contact in self.timeseries:
#count by residue name not by proteinring
pkey = (contact.ligandatomid,contact.ligandatomname, contact.resid,contact.resname,contact.segid)
saltbridges[pkey]+=1
dtype = [("ligand_atom_id",int),("ligand_atom_name","|U4"),("resid",int),("resname","|U4"),("segid","|U8"),("frequency",float) ]
out = np.empty((len(saltbridges),),dtype=dtype)
tsteps = float(len(self.timesteps))
for cursor,(key,count) in enumerate(saltbridges.iteritems()):
out[cursor] = key + (count / tsteps,)
return out.view(np.recarray) | python | def count_by_type(self):
"""Count how many times each individual salt bridge occured throughout the simulation.
Returns numpy array."""
saltbridges = defaultdict(int)
for contact in self.timeseries:
#count by residue name not by proteinring
pkey = (contact.ligandatomid,contact.ligandatomname, contact.resid,contact.resname,contact.segid)
saltbridges[pkey]+=1
dtype = [("ligand_atom_id",int),("ligand_atom_name","|U4"),("resid",int),("resname","|U4"),("segid","|U8"),("frequency",float) ]
out = np.empty((len(saltbridges),),dtype=dtype)
tsteps = float(len(self.timesteps))
for cursor,(key,count) in enumerate(saltbridges.iteritems()):
out[cursor] = key + (count / tsteps,)
return out.view(np.recarray) | [
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ldomic/lintools | lintools/analysis/salt_bridges.py | SaltBridges.count_by_time | def count_by_time(self):
"""Count how many salt bridges occured in each frame.
Returns numpy array."""
out = np.empty((len(self.timesteps),), dtype=[('time', float), ('count', int)])
for cursor,timestep in enumerate(self.timesteps):
out[cursor] = (timestep,len([x for x in self.timeseries if x.time==timestep]))
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"""Count how many salt bridges occured in each frame.
Returns numpy array."""
out = np.empty((len(self.timesteps),), dtype=[('time', float), ('count', int)])
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inveniosoftware-contrib/json-merger | json_merger/config.py | DictMergerOps.keep_longest | def keep_longest(head, update, down_path):
"""Keep longest field among `head` and `update`.
"""
if update is None:
return 'f'
if head is None:
return 's'
return 'f' if len(head) >= len(update) else 's' | python | def keep_longest(head, update, down_path):
"""Keep longest field among `head` and `update`.
"""
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if head is None:
return 's'
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robinandeer/puzzle | puzzle/plugins/sql/mixins/actions/comment.py | CommentActions.comments | def comments(self, case_id=None, variant_id=None, username=None):
"""Return comments for a case or variant.
Args:
case_id (str): id for a related case
variant_id (Optional[str]): id for a related variant
"""
logger.debug("Looking for comments")
comment_objs = self.query(Comment)
if case_id:
comment_objs = comment_objs.filter_by(case_id=case_id)
if variant_id:
comment_objs = comment_objs.filter_by(variant_id=variant_id)
elif case_id:
comment_objs = comment_objs.filter_by(variant_id=None)
return comment_objs | python | def comments(self, case_id=None, variant_id=None, username=None):
"""Return comments for a case or variant.
Args:
case_id (str): id for a related case
variant_id (Optional[str]): id for a related variant
"""
logger.debug("Looking for comments")
comment_objs = self.query(Comment)
if case_id:
comment_objs = comment_objs.filter_by(case_id=case_id)
if variant_id:
comment_objs = comment_objs.filter_by(variant_id=variant_id)
elif case_id:
comment_objs = comment_objs.filter_by(variant_id=None)
return comment_objs | [
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robinandeer/puzzle | puzzle/plugins/sql/mixins/actions/comment.py | CommentActions.add_comment | def add_comment(self, case_obj, text, variant_id=None, username=None):
"""Add a comment to a variant or a case"""
comment = Comment(
text=text,
username=username or 'Anonymous',
case=case_obj,
# md5 sum of chrom, pos, ref, alt
variant_id=variant_id
)
self.session.add(comment)
self.save()
return comment | python | def add_comment(self, case_obj, text, variant_id=None, username=None):
"""Add a comment to a variant or a case"""
comment = Comment(
text=text,
username=username or 'Anonymous',
case=case_obj,
# md5 sum of chrom, pos, ref, alt
variant_id=variant_id
)
self.session.add(comment)
self.save()
return comment | [
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robinandeer/puzzle | puzzle/plugins/vcf/mixins/variant_extras/consequences.py | ConsequenceExtras._add_consequences | def _add_consequences(self, variant_obj, raw_variant_line):
"""Add the consequences found for a variant
Args:
variant_obj (puzzle.models.Variant)
raw_variant_line (str): A raw vcf variant line
"""
consequences = []
for consequence in SO_TERMS:
if consequence in raw_variant_line:
consequences.append(consequence)
variant_obj.consequences = consequences | python | def _add_consequences(self, variant_obj, raw_variant_line):
"""Add the consequences found for a variant
Args:
variant_obj (puzzle.models.Variant)
raw_variant_line (str): A raw vcf variant line
"""
consequences = []
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ellethee/argparseinator | argparseinator/utils.py | collect_appendvars | def collect_appendvars(ap_, cls):
"""
colleziona elementi per le liste.
"""
for key, value in cls.__dict__.items():
if key.startswith('appendvars_'):
varname = key[11:]
if varname not in ap_.appendvars:
ap_.appendvars[varname] = []
if value not in ap_.appendvars[varname]:
if not isinstance(value, list):
value = [value]
ap_.appendvars[varname] += value | python | def collect_appendvars(ap_, cls):
"""
colleziona elementi per le liste.
"""
for key, value in cls.__dict__.items():
if key.startswith('appendvars_'):
varname = key[11:]
if varname not in ap_.appendvars:
ap_.appendvars[varname] = []
if value not in ap_.appendvars[varname]:
if not isinstance(value, list):
value = [value]
ap_.appendvars[varname] += value | [
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ellethee/argparseinator | argparseinator/utils.py | has_shared | def has_shared(arg, shared):
"""
Verifica se ci sono shared.
"""
try:
if isinstance(shared, list):
shared_arguments = shared
else:
shared_arguments = shared.__shared_arguments__
for idx, (args, kwargs) in enumerate(shared_arguments):
arg_name = kwargs.get(
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if arg_name == arg:
return idx
idx = False
except (ValueError, AttributeError):
idx = False
return idx | python | def has_shared(arg, shared):
"""
Verifica se ci sono shared.
"""
try:
if isinstance(shared, list):
shared_arguments = shared
else:
shared_arguments = shared.__shared_arguments__
for idx, (args, kwargs) in enumerate(shared_arguments):
arg_name = kwargs.get(
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if arg_name == arg:
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idx = False
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idx = False
return idx | [
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ellethee/argparseinator | argparseinator/utils.py | has_argument | def has_argument(arg, arguments):
"""
Verifica se ci sono argument con la classe.
"""
try:
if not isinstance(arguments, list):
arguments = arguments.__arguments__
for idx, (args, kwargs) in enumerate(arguments):
arg_name = kwargs.get(
'dest', args[-1].lstrip('-').replace('-', '_'))
if arg_name == arg:
return idx
idx = False
except (ValueError, AttributeError):
idx = False
return idx | python | def has_argument(arg, arguments):
"""
Verifica se ci sono argument con la classe.
"""
try:
if not isinstance(arguments, list):
arguments = arguments.__arguments__
for idx, (args, kwargs) in enumerate(arguments):
arg_name = kwargs.get(
'dest', args[-1].lstrip('-').replace('-', '_'))
if arg_name == arg:
return idx
idx = False
except (ValueError, AttributeError):
idx = False
return idx | [
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ellethee/argparseinator | argparseinator/utils.py | get_functarguments | def get_functarguments(func):
"""
Recupera gli argomenti dalla funzione stessa.
"""
argspec = inspect.getargspec(func)
if argspec.defaults is not None:
args = argspec.args[:-len(argspec.defaults)]
kwargs = dict(
zip(argspec.args[-len(argspec.defaults):], argspec.defaults))
else:
args = argspec.args
kwargs = {}
if args and args[0] == 'self':
args.pop(0)
func.__named__ = []
arguments = []
shared = get_shared(func)
for arg in args:
if has_shared(arg, shared) is not False:
continue
if has_argument(arg, func.__cls__) is not False:
continue
arguments.append(([arg], {}, ))
func.__named__.append(arg)
for key, val in kwargs.items():
if has_shared(key, shared) is not False:
continue
if has_argument(key, func.__cls__) is not False:
continue
if isinstance(val, dict):
flags = [val.pop('lflag', '--%s' % key)]
short = val.pop('flag', None)
dest = val.get('dest', key).replace('-', '_')
if short:
flags.insert(0, short)
else:
flags = ['--%s' % key]
val = dict(default=val)
dest = key.replace('-', '_')
func.__named__.append(dest)
arguments.append((flags, val, ))
return arguments | python | def get_functarguments(func):
"""
Recupera gli argomenti dalla funzione stessa.
"""
argspec = inspect.getargspec(func)
if argspec.defaults is not None:
args = argspec.args[:-len(argspec.defaults)]
kwargs = dict(
zip(argspec.args[-len(argspec.defaults):], argspec.defaults))
else:
args = argspec.args
kwargs = {}
if args and args[0] == 'self':
args.pop(0)
func.__named__ = []
arguments = []
shared = get_shared(func)
for arg in args:
if has_shared(arg, shared) is not False:
continue
if has_argument(arg, func.__cls__) is not False:
continue
arguments.append(([arg], {}, ))
func.__named__.append(arg)
for key, val in kwargs.items():
if has_shared(key, shared) is not False:
continue
if has_argument(key, func.__cls__) is not False:
continue
if isinstance(val, dict):
flags = [val.pop('lflag', '--%s' % key)]
short = val.pop('flag', None)
dest = val.get('dest', key).replace('-', '_')
if short:
flags.insert(0, short)
else:
flags = ['--%s' % key]
val = dict(default=val)
dest = key.replace('-', '_')
func.__named__.append(dest)
arguments.append((flags, val, ))
return arguments | [
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ellethee/argparseinator | argparseinator/utils.py | get_parser | def get_parser(func, parent):
"""
Imposta il parser.
"""
parser = parent.add_parser(func.__cmd_name__, help=func.__doc__)
for args, kwargs in func.__arguments__:
parser.add_argument(*args, **kwargs)
return parser | python | def get_parser(func, parent):
"""
Imposta il parser.
"""
parser = parent.add_parser(func.__cmd_name__, help=func.__doc__)
for args, kwargs in func.__arguments__:
parser.add_argument(*args, **kwargs)
return parser | [
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ellethee/argparseinator | argparseinator/utils.py | get_shared | def get_shared(func):
"""
return shared.
"""
shared = []
if not hasattr(func, '__cls__'):
return shared
if not hasattr(func.__cls__, '__shared_arguments__'):
return shared
if hasattr(func, '__no_share__'):
if func.__no_share__ is True:
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shared += [
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not in func.__no_share__]
else:
shared = func.__cls__.__shared_arguments__
return shared | python | def get_shared(func):
"""
return shared.
"""
shared = []
if not hasattr(func, '__cls__'):
return shared
if not hasattr(func.__cls__, '__shared_arguments__'):
return shared
if hasattr(func, '__no_share__'):
if func.__no_share__ is True:
return shared
else:
shared += [
s for s in func.__cls__.__shared_arguments__
if (s[0][-1].replace('--', '').replace('-', '_'))
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else:
shared = func.__cls__.__shared_arguments__
return shared | [
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ellethee/argparseinator | argparseinator/utils.py | set_subcommands | def set_subcommands(func, parser):
"""
Set subcommands.
"""
if hasattr(func, '__subcommands__') and func.__subcommands__:
sub_parser = parser.add_subparsers(
title=SUBCOMMANDS_LIST_TITLE, dest='subcommand',
description=SUBCOMMANDS_LIST_DESCRIPTION.format(
func.__cmd_name__),
help=func.__doc__)
for sub_func in func.__subcommands__.values():
parser = get_parser(sub_func, sub_parser)
for args, kwargs in get_shared(sub_func):
parser.add_argument(*args, **kwargs)
else:
for args, kwargs in get_shared(func):
parser.add_argument(*args, **kwargs) | python | def set_subcommands(func, parser):
"""
Set subcommands.
"""
if hasattr(func, '__subcommands__') and func.__subcommands__:
sub_parser = parser.add_subparsers(
title=SUBCOMMANDS_LIST_TITLE, dest='subcommand',
description=SUBCOMMANDS_LIST_DESCRIPTION.format(
func.__cmd_name__),
help=func.__doc__)
for sub_func in func.__subcommands__.values():
parser = get_parser(sub_func, sub_parser)
for args, kwargs in get_shared(sub_func):
parser.add_argument(*args, **kwargs)
else:
for args, kwargs in get_shared(func):
parser.add_argument(*args, **kwargs) | [
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ellethee/argparseinator | argparseinator/utils.py | check_help | def check_help():
"""
check know args in argv.
"""
# know arguments
know = set(('-h', '--help', '-v', '--version'))
# arguments
args = set(sys.argv[1:])
# returns True if there is at least one known argument in arguments
return len(know.intersection(args)) > 0 | python | def check_help():
"""
check know args in argv.
"""
# know arguments
know = set(('-h', '--help', '-v', '--version'))
# arguments
args = set(sys.argv[1:])
# returns True if there is at least one known argument in arguments
return len(know.intersection(args)) > 0 | [
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ldomic/lintools | lintools/lintools.py | Lintools.analysis_of_prot_lig_interactions | def analysis_of_prot_lig_interactions(self):
"""
The classes and function that deal with protein-ligand interaction analysis.
"""
self.hbonds = HBonds(self.topol_data,self.trajectory,self.start,self.end,self.skip,self.analysis_cutoff,distance=3)
self.pistacking = PiStacking(self.topol_data,self.trajectory,self.start,self.end,self.skip, self.analysis_cutoff)
self.sasa = SASA(self.topol_data,self.trajectory)
self.lig_descr = LigDescr(self.topol_data)
if self.trajectory!=[]:
self.rmsf = RMSF_measurements(self.topol_data,self.topology,self.trajectory,self.ligand,self.start,self.end,self.skip)
self.salt_bridges = SaltBridges(self.topol_data,self.trajectory,self.lig_descr,self.start,self.end,self.skip,self.analysis_cutoff) | python | def analysis_of_prot_lig_interactions(self):
"""
The classes and function that deal with protein-ligand interaction analysis.
"""
self.hbonds = HBonds(self.topol_data,self.trajectory,self.start,self.end,self.skip,self.analysis_cutoff,distance=3)
self.pistacking = PiStacking(self.topol_data,self.trajectory,self.start,self.end,self.skip, self.analysis_cutoff)
self.sasa = SASA(self.topol_data,self.trajectory)
self.lig_descr = LigDescr(self.topol_data)
if self.trajectory!=[]:
self.rmsf = RMSF_measurements(self.topol_data,self.topology,self.trajectory,self.ligand,self.start,self.end,self.skip)
self.salt_bridges = SaltBridges(self.topol_data,self.trajectory,self.lig_descr,self.start,self.end,self.skip,self.analysis_cutoff) | [
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ldomic/lintools | lintools/lintools.py | Lintools.save_files | def save_files(self):
"""Saves all output from LINTools run in a single directory named after the output name."""
while True:
try:
os.mkdir(self.output_name)
except Exception as e:
self.output_name = raw_input("This directory already exists - please enter a new name:")
else:
break
self.workdir = os.getcwd()
os.chdir(self.workdir+"/"+self.output_name) | python | def save_files(self):
"""Saves all output from LINTools run in a single directory named after the output name."""
while True:
try:
os.mkdir(self.output_name)
except Exception as e:
self.output_name = raw_input("This directory already exists - please enter a new name:")
else:
break
self.workdir = os.getcwd()
os.chdir(self.workdir+"/"+self.output_name) | [
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ldomic/lintools | lintools/lintools.py | Lintools.remove_files | def remove_files(self):
"""Removes intermediate files."""
file_list = ["molecule.svg","lig.pdb","HIS.pdb","PHE.pdb","TRP.pdb","TYR.pdb","lig.mol","test.xtc"]
for residue in self.topol_data.dict_of_plotted_res.keys():
file_list.append(residue[1]+residue[2]+".svg")
for f in file_list:
if os.path.isfile(f)==True:
os.remove(f) | python | def remove_files(self):
"""Removes intermediate files."""
file_list = ["molecule.svg","lig.pdb","HIS.pdb","PHE.pdb","TRP.pdb","TYR.pdb","lig.mol","test.xtc"]
for residue in self.topol_data.dict_of_plotted_res.keys():
file_list.append(residue[1]+residue[2]+".svg")
for f in file_list:
if os.path.isfile(f)==True:
os.remove(f) | [
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MonsieurV/PiPocketGeiger | PiPocketGeiger/__init__.py | RadiationWatch.setup | def setup(self):
"""Initialize the driver by setting up GPIO interrupts
and periodic statistics processing. """
# Initialize the statistics variables.
self.radiation_count = 0
self.noise_count = 0
self.count = 0
# Initialize count_history[].
self.count_history = [0] * HISTORY_LENGTH
self.history_index = 0
# Init measurement time.
self.previous_time = millis()
self.previous_history_time = millis()
self.duration = 0
# Init the GPIO context.
GPIO.setup(self.radiation_pin, GPIO.IN, pull_up_down=GPIO.PUD_UP)
GPIO.setup(self.noise_pin, GPIO.IN, pull_up_down=GPIO.PUD_UP)
# Register local callbacks.
GPIO.add_event_detect(
self.radiation_pin, GPIO.FALLING, callback=self._on_radiation
)
GPIO.add_event_detect(self.noise_pin, GPIO.FALLING, callback=self._on_noise)
# Enable the timer for processing the statistics periodically.
self._enable_timer()
return self | python | def setup(self):
"""Initialize the driver by setting up GPIO interrupts
and periodic statistics processing. """
# Initialize the statistics variables.
self.radiation_count = 0
self.noise_count = 0
self.count = 0
# Initialize count_history[].
self.count_history = [0] * HISTORY_LENGTH
self.history_index = 0
# Init measurement time.
self.previous_time = millis()
self.previous_history_time = millis()
self.duration = 0
# Init the GPIO context.
GPIO.setup(self.radiation_pin, GPIO.IN, pull_up_down=GPIO.PUD_UP)
GPIO.setup(self.noise_pin, GPIO.IN, pull_up_down=GPIO.PUD_UP)
# Register local callbacks.
GPIO.add_event_detect(
self.radiation_pin, GPIO.FALLING, callback=self._on_radiation
)
GPIO.add_event_detect(self.noise_pin, GPIO.FALLING, callback=self._on_noise)
# Enable the timer for processing the statistics periodically.
self._enable_timer()
return self | [
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robinandeer/puzzle | puzzle/cli/load.py | load | def load(ctx, variant_source, family_file, family_type, root):
"""
Load a variant source into the database.
If no database was found run puzzle init first.
1. VCF: If a vcf file is used it can be loaded with a ped file
2. GEMINI: Ped information will be retreived from the gemini db
"""
root = root or ctx.obj.get('root') or os.path.expanduser("~/.puzzle")
if os.path.isfile(root):
logger.error("'root' can't be a file")
ctx.abort()
logger.info("Root directory is: {}".format(root))
db_path = os.path.join(root, 'puzzle_db.sqlite3')
logger.info("db path is: {}".format(db_path))
if not os.path.exists(db_path):
logger.warn("database not initialized, run 'puzzle init'")
ctx.abort()
if not os.path.isfile(variant_source):
logger.error("Variant source has to be a file")
ctx.abort()
mode = get_file_type(variant_source)
if mode == 'unknown':
logger.error("Unknown file type")
ctx.abort()
#Test if gemini is installed
elif mode == 'gemini':
logger.debug("Initialzing GEMINI plugin")
if not GEMINI:
logger.error("Need to have gemini installed to use gemini plugin")
ctx.abort()
logger.debug('Set puzzle backend to {0}'.format(mode))
variant_type = get_variant_type(variant_source)
logger.debug('Set variant type to {0}'.format(variant_type))
cases = get_cases(
variant_source=variant_source,
case_lines=family_file,
case_type=family_type,
variant_type=variant_type,
variant_mode=mode
)
if len(cases) == 0:
logger.warning("No cases found")
ctx.abort()
logger.info("Initializing sqlite plugin")
store = SqlStore(db_path)
for case_obj in cases:
if store.case(case_obj.case_id) is not None:
logger.warn("{} already exists in the database"
.format(case_obj.case_id))
continue
# extract case information
logger.debug("adding case: {} to puzzle db".format(case_obj.case_id))
store.add_case(case_obj, vtype=variant_type, mode=mode) | python | def load(ctx, variant_source, family_file, family_type, root):
"""
Load a variant source into the database.
If no database was found run puzzle init first.
1. VCF: If a vcf file is used it can be loaded with a ped file
2. GEMINI: Ped information will be retreived from the gemini db
"""
root = root or ctx.obj.get('root') or os.path.expanduser("~/.puzzle")
if os.path.isfile(root):
logger.error("'root' can't be a file")
ctx.abort()
logger.info("Root directory is: {}".format(root))
db_path = os.path.join(root, 'puzzle_db.sqlite3')
logger.info("db path is: {}".format(db_path))
if not os.path.exists(db_path):
logger.warn("database not initialized, run 'puzzle init'")
ctx.abort()
if not os.path.isfile(variant_source):
logger.error("Variant source has to be a file")
ctx.abort()
mode = get_file_type(variant_source)
if mode == 'unknown':
logger.error("Unknown file type")
ctx.abort()
#Test if gemini is installed
elif mode == 'gemini':
logger.debug("Initialzing GEMINI plugin")
if not GEMINI:
logger.error("Need to have gemini installed to use gemini plugin")
ctx.abort()
logger.debug('Set puzzle backend to {0}'.format(mode))
variant_type = get_variant_type(variant_source)
logger.debug('Set variant type to {0}'.format(variant_type))
cases = get_cases(
variant_source=variant_source,
case_lines=family_file,
case_type=family_type,
variant_type=variant_type,
variant_mode=mode
)
if len(cases) == 0:
logger.warning("No cases found")
ctx.abort()
logger.info("Initializing sqlite plugin")
store = SqlStore(db_path)
for case_obj in cases:
if store.case(case_obj.case_id) is not None:
logger.warn("{} already exists in the database"
.format(case_obj.case_id))
continue
# extract case information
logger.debug("adding case: {} to puzzle db".format(case_obj.case_id))
store.add_case(case_obj, vtype=variant_type, mode=mode) | [
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basecrm/basecrm-python | basecrm/services.py | AssociatedContactsService.list | def list(self, deal_id, **params):
"""
Retrieve deal's associated contacts
Returns all deal associated contacts
:calls: ``get /deals/{deal_id}/associated_contacts``
:param int deal_id: Unique identifier of a Deal.
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of AssociatedContacts.
:rtype: list
"""
_, _, associated_contacts = self.http_client.get("/deals/{deal_id}/associated_contacts".format(deal_id=deal_id), params=params)
return associated_contacts | python | def list(self, deal_id, **params):
"""
Retrieve deal's associated contacts
Returns all deal associated contacts
:calls: ``get /deals/{deal_id}/associated_contacts``
:param int deal_id: Unique identifier of a Deal.
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of AssociatedContacts.
:rtype: list
"""
_, _, associated_contacts = self.http_client.get("/deals/{deal_id}/associated_contacts".format(deal_id=deal_id), params=params)
return associated_contacts | [
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basecrm/basecrm-python | basecrm/services.py | AssociatedContactsService.create | def create(self, deal_id, *args, **kwargs):
"""
Create an associated contact
Creates a deal's associated contact and its role
If the specified deal or contact does not exist, the request will return an error
:calls: ``post /deals/{deal_id}/associated_contacts``
:param int deal_id: Unique identifier of a Deal.
:param tuple *args: (optional) Single object representing AssociatedContact resource.
:param dict **kwargs: (optional) AssociatedContact attributes.
:return: Dictionary that support attriubte-style access and represents newely created AssociatedContact resource.
:rtype: dict
"""
if not args and not kwargs:
raise Exception('attributes for AssociatedContact are missing')
attributes = args[0] if args else kwargs
attributes = dict((k, v) for k, v in attributes.iteritems() if k in self.OPTS_KEYS_TO_PERSIST)
_, _, associated_contact = self.http_client.post("/deals/{deal_id}/associated_contacts".format(deal_id=deal_id), body=attributes)
return associated_contact | python | def create(self, deal_id, *args, **kwargs):
"""
Create an associated contact
Creates a deal's associated contact and its role
If the specified deal or contact does not exist, the request will return an error
:calls: ``post /deals/{deal_id}/associated_contacts``
:param int deal_id: Unique identifier of a Deal.
:param tuple *args: (optional) Single object representing AssociatedContact resource.
:param dict **kwargs: (optional) AssociatedContact attributes.
:return: Dictionary that support attriubte-style access and represents newely created AssociatedContact resource.
:rtype: dict
"""
if not args and not kwargs:
raise Exception('attributes for AssociatedContact are missing')
attributes = args[0] if args else kwargs
attributes = dict((k, v) for k, v in attributes.iteritems() if k in self.OPTS_KEYS_TO_PERSIST)
_, _, associated_contact = self.http_client.post("/deals/{deal_id}/associated_contacts".format(deal_id=deal_id), body=attributes)
return associated_contact | [
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basecrm/basecrm-python | basecrm/services.py | AssociatedContactsService.destroy | def destroy(self, deal_id, contact_id) :
"""
Remove an associated contact
Remove a deal's associated contact
If a deal with the supplied unique identifier does not exist, it returns an error
This operation cannot be undone
:calls: ``delete /deals/{deal_id}/associated_contacts/{contact_id}``
:param int deal_id: Unique identifier of a Deal.
:param int contact_id: Unique identifier of a Contact.
:return: True if the operation succeeded.
:rtype: bool
"""
status_code, _, _ = self.http_client.delete("/deals/{deal_id}/associated_contacts/{contact_id}".format(deal_id=deal_id, contact_id=contact_id))
return status_code == 204 | python | def destroy(self, deal_id, contact_id) :
"""
Remove an associated contact
Remove a deal's associated contact
If a deal with the supplied unique identifier does not exist, it returns an error
This operation cannot be undone
:calls: ``delete /deals/{deal_id}/associated_contacts/{contact_id}``
:param int deal_id: Unique identifier of a Deal.
:param int contact_id: Unique identifier of a Contact.
:return: True if the operation succeeded.
:rtype: bool
"""
status_code, _, _ = self.http_client.delete("/deals/{deal_id}/associated_contacts/{contact_id}".format(deal_id=deal_id, contact_id=contact_id))
return status_code == 204 | [
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basecrm/basecrm-python | basecrm/services.py | ContactsService.list | def list(self, **params):
"""
Retrieve all contacts
Returns all contacts available to the user according to the parameters provided
:calls: ``get /contacts``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Contacts.
:rtype: list
"""
_, _, contacts = self.http_client.get("/contacts", params=params)
return contacts | python | def list(self, **params):
"""
Retrieve all contacts
Returns all contacts available to the user according to the parameters provided
:calls: ``get /contacts``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Contacts.
:rtype: list
"""
_, _, contacts = self.http_client.get("/contacts", params=params)
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basecrm/basecrm-python | basecrm/services.py | ContactsService.retrieve | def retrieve(self, id) :
"""
Retrieve a single contact
Returns a single contact available to the user, according to the unique contact ID provided
If the specified contact does not exist, the request will return an error
:calls: ``get /contacts/{id}``
:param int id: Unique identifier of a Contact.
:return: Dictionary that support attriubte-style access and represent Contact resource.
:rtype: dict
"""
_, _, contact = self.http_client.get("/contacts/{id}".format(id=id))
return contact | python | def retrieve(self, id) :
"""
Retrieve a single contact
Returns a single contact available to the user, according to the unique contact ID provided
If the specified contact does not exist, the request will return an error
:calls: ``get /contacts/{id}``
:param int id: Unique identifier of a Contact.
:return: Dictionary that support attriubte-style access and represent Contact resource.
:rtype: dict
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_, _, contact = self.http_client.get("/contacts/{id}".format(id=id))
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basecrm/basecrm-python | basecrm/services.py | DealsService.list | def list(self, **params):
"""
Retrieve all deals
Returns all deals available to the user according to the parameters provided
:calls: ``get /deals``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Deals.
:rtype: list
"""
_, _, deals = self.http_client.get("/deals", params=params)
for deal in deals:
deal['value'] = Coercion.to_decimal(deal['value'])
return deals | python | def list(self, **params):
"""
Retrieve all deals
Returns all deals available to the user according to the parameters provided
:calls: ``get /deals``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Deals.
:rtype: list
"""
_, _, deals = self.http_client.get("/deals", params=params)
for deal in deals:
deal['value'] = Coercion.to_decimal(deal['value'])
return deals | [
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basecrm/basecrm-python | basecrm/services.py | DealsService.create | def create(self, *args, **kwargs):
"""
Create a deal
Create a new deal
:calls: ``post /deals``
:param tuple *args: (optional) Single object representing Deal resource.
:param dict **kwargs: (optional) Deal attributes.
:return: Dictionary that support attriubte-style access and represents newely created Deal resource.
:rtype: dict
"""
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deal["value"] = Coercion.to_decimal(deal["value"])
return deal | python | def create(self, *args, **kwargs):
"""
Create a deal
Create a new deal
:calls: ``post /deals``
:param tuple *args: (optional) Single object representing Deal resource.
:param dict **kwargs: (optional) Deal attributes.
:return: Dictionary that support attriubte-style access and represents newely created Deal resource.
:rtype: dict
"""
if not args and not kwargs:
raise Exception('attributes for Deal are missing')
attributes = args[0] if args else kwargs
attributes = dict((k, v) for k, v in attributes.iteritems() if k in self.OPTS_KEYS_TO_PERSIST)
if "value" in attributes:
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deal["value"] = Coercion.to_decimal(deal["value"])
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basecrm/basecrm-python | basecrm/services.py | DealsService.retrieve | def retrieve(self, id) :
"""
Retrieve a single deal
Returns a single deal available to the user, according to the unique deal ID provided
If the specified deal does not exist, the request will return an error
:calls: ``get /deals/{id}``
:param int id: Unique identifier of a Deal.
:return: Dictionary that support attriubte-style access and represent Deal resource.
:rtype: dict
"""
_, _, deal = self.http_client.get("/deals/{id}".format(id=id))
deal["value"] = Coercion.to_decimal(deal["value"])
return deal | python | def retrieve(self, id) :
"""
Retrieve a single deal
Returns a single deal available to the user, according to the unique deal ID provided
If the specified deal does not exist, the request will return an error
:calls: ``get /deals/{id}``
:param int id: Unique identifier of a Deal.
:return: Dictionary that support attriubte-style access and represent Deal resource.
:rtype: dict
"""
_, _, deal = self.http_client.get("/deals/{id}".format(id=id))
deal["value"] = Coercion.to_decimal(deal["value"])
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basecrm/basecrm-python | basecrm/services.py | DealsService.update | def update(self, id, *args, **kwargs):
"""
Update a deal
Updates deal information
If the specified deal does not exist, the request will return an error
<figure class="notice">
In order to modify tags used on a record, you need to supply the entire set
`tags` are replaced every time they are used in a request
</figure>
:calls: ``put /deals/{id}``
:param int id: Unique identifier of a Deal.
:param tuple *args: (optional) Single object representing Deal resource which attributes should be updated.
:param dict **kwargs: (optional) Deal attributes to update.
:return: Dictionary that support attriubte-style access and represents updated Deal resource.
:rtype: dict
"""
if not args and not kwargs:
raise Exception('attributes for Deal are missing')
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if "value" in attributes:
attributes["value"] = Coercion.to_string(attributes["value"])
_, _, deal = self.http_client.put("/deals/{id}".format(id=id), body=attributes)
deal["value"] = Coercion.to_decimal(deal["value"])
return deal | python | def update(self, id, *args, **kwargs):
"""
Update a deal
Updates deal information
If the specified deal does not exist, the request will return an error
<figure class="notice">
In order to modify tags used on a record, you need to supply the entire set
`tags` are replaced every time they are used in a request
</figure>
:calls: ``put /deals/{id}``
:param int id: Unique identifier of a Deal.
:param tuple *args: (optional) Single object representing Deal resource which attributes should be updated.
:param dict **kwargs: (optional) Deal attributes to update.
:return: Dictionary that support attriubte-style access and represents updated Deal resource.
:rtype: dict
"""
if not args and not kwargs:
raise Exception('attributes for Deal are missing')
attributes = args[0] if args else kwargs
attributes = dict((k, v) for k, v in attributes.iteritems() if k in self.OPTS_KEYS_TO_PERSIST)
if "value" in attributes:
attributes["value"] = Coercion.to_string(attributes["value"])
_, _, deal = self.http_client.put("/deals/{id}".format(id=id), body=attributes)
deal["value"] = Coercion.to_decimal(deal["value"])
return deal | [
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</figure>
:calls: ``put /deals/{id}``
:param int id: Unique identifier of a Deal.
:param tuple *args: (optional) Single object representing Deal resource which attributes should be updated.
:param dict **kwargs: (optional) Deal attributes to update.
:return: Dictionary that support attriubte-style access and represents updated Deal resource.
:rtype: dict | [
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basecrm/basecrm-python | basecrm/services.py | DealSourcesService.update | def update(self, id, *args, **kwargs):
"""
Update a source
Updates source information
If the specified source does not exist, the request will return an error
<figure class="notice">
If you want to update a source, you **must** make sure source's name is unique
</figure>
:calls: ``put /deal_sources/{id}``
:param int id: Unique identifier of a DealSource.
:param tuple *args: (optional) Single object representing DealSource resource which attributes should be updated.
:param dict **kwargs: (optional) DealSource attributes to update.
:return: Dictionary that support attriubte-style access and represents updated DealSource resource.
:rtype: dict
"""
if not args and not kwargs:
raise Exception('attributes for DealSource are missing')
attributes = args[0] if args else kwargs
attributes = dict((k, v) for k, v in attributes.iteritems() if k in self.OPTS_KEYS_TO_PERSIST)
_, _, deal_source = self.http_client.put("/deal_sources/{id}".format(id=id), body=attributes)
return deal_source | python | def update(self, id, *args, **kwargs):
"""
Update a source
Updates source information
If the specified source does not exist, the request will return an error
<figure class="notice">
If you want to update a source, you **must** make sure source's name is unique
</figure>
:calls: ``put /deal_sources/{id}``
:param int id: Unique identifier of a DealSource.
:param tuple *args: (optional) Single object representing DealSource resource which attributes should be updated.
:param dict **kwargs: (optional) DealSource attributes to update.
:return: Dictionary that support attriubte-style access and represents updated DealSource resource.
:rtype: dict
"""
if not args and not kwargs:
raise Exception('attributes for DealSource are missing')
attributes = args[0] if args else kwargs
attributes = dict((k, v) for k, v in attributes.iteritems() if k in self.OPTS_KEYS_TO_PERSIST)
_, _, deal_source = self.http_client.put("/deal_sources/{id}".format(id=id), body=attributes)
return deal_source | [
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basecrm/basecrm-python | basecrm/services.py | DealUnqualifiedReasonsService.list | def list(self, **params):
"""
Retrieve all deal unqualified reasons
Returns all deal unqualified reasons available to the user according to the parameters provided
:calls: ``get /deal_unqualified_reasons``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of DealUnqualifiedReasons.
:rtype: list
"""
_, _, deal_unqualified_reasons = self.http_client.get("/deal_unqualified_reasons", params=params)
return deal_unqualified_reasons | python | def list(self, **params):
"""
Retrieve all deal unqualified reasons
Returns all deal unqualified reasons available to the user according to the parameters provided
:calls: ``get /deal_unqualified_reasons``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of DealUnqualifiedReasons.
:rtype: list
"""
_, _, deal_unqualified_reasons = self.http_client.get("/deal_unqualified_reasons", params=params)
return deal_unqualified_reasons | [
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basecrm/basecrm-python | basecrm/services.py | DealUnqualifiedReasonsService.retrieve | def retrieve(self, id) :
"""
Retrieve a single deal unqualified reason
Returns a single deal unqualified reason available to the user by the provided id
If a loss reason with the supplied unique identifier does not exist, it returns an error
:calls: ``get /deal_unqualified_reasons/{id}``
:param int id: Unique identifier of a DealUnqualifiedReason.
:return: Dictionary that support attriubte-style access and represent DealUnqualifiedReason resource.
:rtype: dict
"""
_, _, deal_unqualified_reason = self.http_client.get("/deal_unqualified_reasons/{id}".format(id=id))
return deal_unqualified_reason | python | def retrieve(self, id) :
"""
Retrieve a single deal unqualified reason
Returns a single deal unqualified reason available to the user by the provided id
If a loss reason with the supplied unique identifier does not exist, it returns an error
:calls: ``get /deal_unqualified_reasons/{id}``
:param int id: Unique identifier of a DealUnqualifiedReason.
:return: Dictionary that support attriubte-style access and represent DealUnqualifiedReason resource.
:rtype: dict
"""
_, _, deal_unqualified_reason = self.http_client.get("/deal_unqualified_reasons/{id}".format(id=id))
return deal_unqualified_reason | [
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basecrm/basecrm-python | basecrm/services.py | LeadsService.list | def list(self, **params):
"""
Retrieve all leads
Returns all leads available to the user, according to the parameters provided
:calls: ``get /leads``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Leads.
:rtype: list
"""
_, _, leads = self.http_client.get("/leads", params=params)
return leads | python | def list(self, **params):
"""
Retrieve all leads
Returns all leads available to the user, according to the parameters provided
:calls: ``get /leads``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Leads.
:rtype: list
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basecrm/basecrm-python | basecrm/services.py | LeadsService.retrieve | def retrieve(self, id) :
"""
Retrieve a single lead
Returns a single lead available to the user, according to the unique lead ID provided
If the specified lead does not exist, this query returns an error
:calls: ``get /leads/{id}``
:param int id: Unique identifier of a Lead.
:return: Dictionary that support attriubte-style access and represent Lead resource.
:rtype: dict
"""
_, _, lead = self.http_client.get("/leads/{id}".format(id=id))
return lead | python | def retrieve(self, id) :
"""
Retrieve a single lead
Returns a single lead available to the user, according to the unique lead ID provided
If the specified lead does not exist, this query returns an error
:calls: ``get /leads/{id}``
:param int id: Unique identifier of a Lead.
:return: Dictionary that support attriubte-style access and represent Lead resource.
:rtype: dict
"""
_, _, lead = self.http_client.get("/leads/{id}".format(id=id))
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basecrm/basecrm-python | basecrm/services.py | LeadUnqualifiedReasonsService.list | def list(self, **params):
"""
Retrieve all lead unqualified reasons
Returns all lead unqualified reasons available to the user according to the parameters provided
:calls: ``get /lead_unqualified_reasons``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of LeadUnqualifiedReasons.
:rtype: list
"""
_, _, lead_unqualified_reasons = self.http_client.get("/lead_unqualified_reasons", params=params)
return lead_unqualified_reasons | python | def list(self, **params):
"""
Retrieve all lead unqualified reasons
Returns all lead unqualified reasons available to the user according to the parameters provided
:calls: ``get /lead_unqualified_reasons``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of LeadUnqualifiedReasons.
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basecrm/basecrm-python | basecrm/services.py | LineItemsService.list | def list(self, order_id, **params):
"""
Retrieve order's line items
Returns all line items associated to order
:calls: ``get /orders/{order_id}/line_items``
:param int order_id: Unique identifier of a Order.
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of LineItems.
:rtype: list
"""
_, _, line_items = self.http_client.get("/orders/{order_id}/line_items".format(order_id=order_id), params=params)
return line_items | python | def list(self, order_id, **params):
"""
Retrieve order's line items
Returns all line items associated to order
:calls: ``get /orders/{order_id}/line_items``
:param int order_id: Unique identifier of a Order.
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of LineItems.
:rtype: list
"""
_, _, line_items = self.http_client.get("/orders/{order_id}/line_items".format(order_id=order_id), params=params)
return line_items | [
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basecrm/basecrm-python | basecrm/services.py | LineItemsService.retrieve | def retrieve(self, order_id, id) :
"""
Retrieve a single line item
Returns a single line item of an order, according to the unique line item ID provided
:calls: ``get /orders/{order_id}/line_items/{id}``
:param int order_id: Unique identifier of a Order.
:param int id: Unique identifier of a LineItem.
:return: Dictionary that support attriubte-style access and represent LineItem resource.
:rtype: dict
"""
_, _, line_item = self.http_client.get("/orders/{order_id}/line_items/{id}".format(order_id=order_id, id=id))
return line_item | python | def retrieve(self, order_id, id) :
"""
Retrieve a single line item
Returns a single line item of an order, according to the unique line item ID provided
:calls: ``get /orders/{order_id}/line_items/{id}``
:param int order_id: Unique identifier of a Order.
:param int id: Unique identifier of a LineItem.
:return: Dictionary that support attriubte-style access and represent LineItem resource.
:rtype: dict
"""
_, _, line_item = self.http_client.get("/orders/{order_id}/line_items/{id}".format(order_id=order_id, id=id))
return line_item | [
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basecrm/basecrm-python | basecrm/services.py | LossReasonsService.list | def list(self, **params):
"""
Retrieve all reasons
Returns all deal loss reasons available to the user according to the parameters provided
:calls: ``get /loss_reasons``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of LossReasons.
:rtype: list
"""
_, _, loss_reasons = self.http_client.get("/loss_reasons", params=params)
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"""
Retrieve all reasons
Returns all deal loss reasons available to the user according to the parameters provided
:calls: ``get /loss_reasons``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of LossReasons.
:rtype: list
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_, _, loss_reasons = self.http_client.get("/loss_reasons", params=params)
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basecrm/basecrm-python | basecrm/services.py | LossReasonsService.retrieve | def retrieve(self, id) :
"""
Retrieve a single reason
Returns a single loss reason available to the user by the provided id
If a loss reason with the supplied unique identifier does not exist, it returns an error
:calls: ``get /loss_reasons/{id}``
:param int id: Unique identifier of a LossReason.
:return: Dictionary that support attriubte-style access and represent LossReason resource.
:rtype: dict
"""
_, _, loss_reason = self.http_client.get("/loss_reasons/{id}".format(id=id))
return loss_reason | python | def retrieve(self, id) :
"""
Retrieve a single reason
Returns a single loss reason available to the user by the provided id
If a loss reason with the supplied unique identifier does not exist, it returns an error
:calls: ``get /loss_reasons/{id}``
:param int id: Unique identifier of a LossReason.
:return: Dictionary that support attriubte-style access and represent LossReason resource.
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basecrm/basecrm-python | basecrm/services.py | NotesService.list | def list(self, **params):
"""
Retrieve all notes
Returns all notes available to the user, according to the parameters provided
:calls: ``get /notes``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Notes.
:rtype: list
"""
_, _, notes = self.http_client.get("/notes", params=params)
return notes | python | def list(self, **params):
"""
Retrieve all notes
Returns all notes available to the user, according to the parameters provided
:calls: ``get /notes``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Notes.
:rtype: list
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_, _, notes = self.http_client.get("/notes", params=params)
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basecrm/basecrm-python | basecrm/services.py | NotesService.retrieve | def retrieve(self, id) :
"""
Retrieve a single note
Returns a single note available to the user, according to the unique note ID provided
If the note ID does not exist, this request will return an error
:calls: ``get /notes/{id}``
:param int id: Unique identifier of a Note.
:return: Dictionary that support attriubte-style access and represent Note resource.
:rtype: dict
"""
_, _, note = self.http_client.get("/notes/{id}".format(id=id))
return note | python | def retrieve(self, id) :
"""
Retrieve a single note
Returns a single note available to the user, according to the unique note ID provided
If the note ID does not exist, this request will return an error
:calls: ``get /notes/{id}``
:param int id: Unique identifier of a Note.
:return: Dictionary that support attriubte-style access and represent Note resource.
:rtype: dict
"""
_, _, note = self.http_client.get("/notes/{id}".format(id=id))
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basecrm/basecrm-python | basecrm/services.py | OrdersService.list | def list(self, **params):
"""
Retrieve all orders
Returns all orders available to the user according to the parameters provided
:calls: ``get /orders``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Orders.
:rtype: list
"""
_, _, orders = self.http_client.get("/orders", params=params)
return orders | python | def list(self, **params):
"""
Retrieve all orders
Returns all orders available to the user according to the parameters provided
:calls: ``get /orders``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Orders.
:rtype: list
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basecrm/basecrm-python | basecrm/services.py | OrdersService.retrieve | def retrieve(self, id) :
"""
Retrieve a single order
Returns a single order available to the user, according to the unique order ID provided
If the specified order does not exist, the request will return an error
:calls: ``get /orders/{id}``
:param int id: Unique identifier of a Order.
:return: Dictionary that support attriubte-style access and represent Order resource.
:rtype: dict
"""
_, _, order = self.http_client.get("/orders/{id}".format(id=id))
return order | python | def retrieve(self, id) :
"""
Retrieve a single order
Returns a single order available to the user, according to the unique order ID provided
If the specified order does not exist, the request will return an error
:calls: ``get /orders/{id}``
:param int id: Unique identifier of a Order.
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basecrm/basecrm-python | basecrm/services.py | PipelinesService.list | def list(self, **params):
"""
Retrieve all pipelines
Returns all pipelines available to the user, according to the parameters provided
:calls: ``get /pipelines``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Pipelines.
:rtype: list
"""
_, _, pipelines = self.http_client.get("/pipelines", params=params)
return pipelines | python | def list(self, **params):
"""
Retrieve all pipelines
Returns all pipelines available to the user, according to the parameters provided
:calls: ``get /pipelines``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Pipelines.
:rtype: list
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_, _, pipelines = self.http_client.get("/pipelines", params=params)
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basecrm/basecrm-python | basecrm/services.py | ProductsService.list | def list(self, **params):
"""
Retrieve all products
Returns all products available to the user according to the parameters provided
:calls: ``get /products``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Products.
:rtype: list
"""
_, _, products = self.http_client.get("/products", params=params)
return products | python | def list(self, **params):
"""
Retrieve all products
Returns all products available to the user according to the parameters provided
:calls: ``get /products``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Products.
:rtype: list
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basecrm/basecrm-python | basecrm/services.py | ProductsService.retrieve | def retrieve(self, id) :
"""
Retrieve a single product
Returns a single product, according to the unique product ID provided
If the specified product does not exist, the request will return an error
:calls: ``get /products/{id}``
:param int id: Unique identifier of a Product.
:return: Dictionary that support attriubte-style access and represent Product resource.
:rtype: dict
"""
_, _, product = self.http_client.get("/products/{id}".format(id=id))
return product | python | def retrieve(self, id) :
"""
Retrieve a single product
Returns a single product, according to the unique product ID provided
If the specified product does not exist, the request will return an error
:calls: ``get /products/{id}``
:param int id: Unique identifier of a Product.
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basecrm/basecrm-python | basecrm/services.py | StagesService.list | def list(self, **params):
"""
Retrieve all stages
Returns all stages available to the user, according to the parameters provided
:calls: ``get /stages``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Stages.
:rtype: list
"""
_, _, stages = self.http_client.get("/stages", params=params)
return stages | python | def list(self, **params):
"""
Retrieve all stages
Returns all stages available to the user, according to the parameters provided
:calls: ``get /stages``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Stages.
:rtype: list
"""
_, _, stages = self.http_client.get("/stages", params=params)
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basecrm/basecrm-python | basecrm/services.py | TagsService.list | def list(self, **params):
"""
Retrieve all tags
Returns all tags available to the user, according to the parameters provided
:calls: ``get /tags``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Tags.
:rtype: list
"""
_, _, tags = self.http_client.get("/tags", params=params)
return tags | python | def list(self, **params):
"""
Retrieve all tags
Returns all tags available to the user, according to the parameters provided
:calls: ``get /tags``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Tags.
:rtype: list
"""
_, _, tags = self.http_client.get("/tags", params=params)
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basecrm/basecrm-python | basecrm/services.py | TagsService.retrieve | def retrieve(self, id) :
"""
Retrieve a single tag
Returns a single tag available to the user according to the unique ID provided
If the specified tag does not exist, this query will return an error
:calls: ``get /tags/{id}``
:param int id: Unique identifier of a Tag.
:return: Dictionary that support attriubte-style access and represent Tag resource.
:rtype: dict
"""
_, _, tag = self.http_client.get("/tags/{id}".format(id=id))
return tag | python | def retrieve(self, id) :
"""
Retrieve a single tag
Returns a single tag available to the user according to the unique ID provided
If the specified tag does not exist, this query will return an error
:calls: ``get /tags/{id}``
:param int id: Unique identifier of a Tag.
:return: Dictionary that support attriubte-style access and represent Tag resource.
:rtype: dict
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basecrm/basecrm-python | basecrm/services.py | TasksService.list | def list(self, **params):
"""
Retrieve all tasks
Returns all tasks available to the user, according to the parameters provided
If you ask for tasks without any parameter provided Base API will return you both **floating** and **related** tasks
Although you can narrow the search set to either of them via query parameters
:calls: ``get /tasks``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Tasks.
:rtype: list
"""
_, _, tasks = self.http_client.get("/tasks", params=params)
return tasks | python | def list(self, **params):
"""
Retrieve all tasks
Returns all tasks available to the user, according to the parameters provided
If you ask for tasks without any parameter provided Base API will return you both **floating** and **related** tasks
Although you can narrow the search set to either of them via query parameters
:calls: ``get /tasks``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Tasks.
:rtype: list
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_, _, tasks = self.http_client.get("/tasks", params=params)
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basecrm/basecrm-python | basecrm/services.py | TasksService.retrieve | def retrieve(self, id) :
"""
Retrieve a single task
Returns a single task available to the user according to the unique task ID provided
If the specified task does not exist, this query will return an error
:calls: ``get /tasks/{id}``
:param int id: Unique identifier of a Task.
:return: Dictionary that support attriubte-style access and represent Task resource.
:rtype: dict
"""
_, _, task = self.http_client.get("/tasks/{id}".format(id=id))
return task | python | def retrieve(self, id) :
"""
Retrieve a single task
Returns a single task available to the user according to the unique task ID provided
If the specified task does not exist, this query will return an error
:calls: ``get /tasks/{id}``
:param int id: Unique identifier of a Task.
:return: Dictionary that support attriubte-style access and represent Task resource.
:rtype: dict
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_, _, task = self.http_client.get("/tasks/{id}".format(id=id))
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basecrm/basecrm-python | basecrm/services.py | TextMessagesService.list | def list(self, **params):
"""
Retrieve text messages
Returns Text Messages, according to the parameters provided
:calls: ``get /text_messages``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of TextMessages.
:rtype: list
"""
_, _, text_messages = self.http_client.get("/text_messages", params=params)
return text_messages | python | def list(self, **params):
"""
Retrieve text messages
Returns Text Messages, according to the parameters provided
:calls: ``get /text_messages``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of TextMessages.
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_, _, text_messages = self.http_client.get("/text_messages", params=params)
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basecrm/basecrm-python | basecrm/services.py | TextMessagesService.retrieve | def retrieve(self, id) :
"""
Retrieve a single text message
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:calls: ``get /text_messages/{id}``
:param int id: Unique identifier of a TextMessage.
:return: Dictionary that support attriubte-style access and represent TextMessage resource.
:rtype: dict
"""
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"""
Retrieve a single text message
Returns a single text message according to the unique ID provided
If the specified user does not exist, this query returns an error
:calls: ``get /text_messages/{id}``
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Returns a single text message according to the unique ID provided
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:calls: ``get /text_messages/{id}``
:param int id: Unique identifier of a TextMessage.
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basecrm/basecrm-python | basecrm/services.py | UsersService.list | def list(self, **params):
"""
Retrieve all users
Returns all users, according to the parameters provided
:calls: ``get /users``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Users.
:rtype: list
"""
_, _, users = self.http_client.get("/users", params=params)
return users | python | def list(self, **params):
"""
Retrieve all users
Returns all users, according to the parameters provided
:calls: ``get /users``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of Users.
:rtype: list
"""
_, _, users = self.http_client.get("/users", params=params)
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basecrm/basecrm-python | basecrm/services.py | UsersService.retrieve | def retrieve(self, id) :
"""
Retrieve a single user
Returns a single user according to the unique user ID provided
If the specified user does not exist, this query returns an error
:calls: ``get /users/{id}``
:param int id: Unique identifier of a User.
:return: Dictionary that support attriubte-style access and represent User resource.
:rtype: dict
"""
_, _, user = self.http_client.get("/users/{id}".format(id=id))
return user | python | def retrieve(self, id) :
"""
Retrieve a single user
Returns a single user according to the unique user ID provided
If the specified user does not exist, this query returns an error
:calls: ``get /users/{id}``
:param int id: Unique identifier of a User.
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basecrm/basecrm-python | basecrm/services.py | VisitOutcomesService.list | def list(self, **params):
"""
Retrieve visit outcomes
Returns Visit Outcomes, according to the parameters provided
:calls: ``get /visit_outcomes``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of VisitOutcomes.
:rtype: list
"""
_, _, visit_outcomes = self.http_client.get("/visit_outcomes", params=params)
return visit_outcomes | python | def list(self, **params):
"""
Retrieve visit outcomes
Returns Visit Outcomes, according to the parameters provided
:calls: ``get /visit_outcomes``
:param dict params: (optional) Search options.
:return: List of dictionaries that support attriubte-style access, which represent collection of VisitOutcomes.
:rtype: list
"""
_, _, visit_outcomes = self.http_client.get("/visit_outcomes", params=params)
return visit_outcomes | [
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jalmeroth/pymusiccast | pymusiccast/helpers.py | request | def request(url, *args, **kwargs):
"""Do the HTTP Request and return data"""
method = kwargs.get('method', 'GET')
timeout = kwargs.pop('timeout', 10) # hass default timeout
req = requests.request(method, url, *args, timeout=timeout, **kwargs)
data = req.json()
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return data | python | def request(url, *args, **kwargs):
"""Do the HTTP Request and return data"""
method = kwargs.get('method', 'GET')
timeout = kwargs.pop('timeout', 10) # hass default timeout
req = requests.request(method, url, *args, timeout=timeout, **kwargs)
data = req.json()
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jalmeroth/pymusiccast | pymusiccast/helpers.py | message_worker | def message_worker(device):
"""Loop through messages and pass them on to right device"""
_LOGGER.debug("Starting Worker Thread.")
msg_q = device.messages
while True:
if not msg_q.empty():
message = msg_q.get()
data = {}
try:
data = json.loads(message.decode("utf-8"))
except ValueError:
_LOGGER.error("Received invalid message: %s", message)
if 'device_id' in data:
device_id = data.get('device_id')
if device_id == device.device_id:
device.handle_event(data)
else:
_LOGGER.warning("Received message for unknown device.")
msg_q.task_done()
time.sleep(0.2) | python | def message_worker(device):
"""Loop through messages and pass them on to right device"""
_LOGGER.debug("Starting Worker Thread.")
msg_q = device.messages
while True:
if not msg_q.empty():
message = msg_q.get()
data = {}
try:
data = json.loads(message.decode("utf-8"))
except ValueError:
_LOGGER.error("Received invalid message: %s", message)
if 'device_id' in data:
device_id = data.get('device_id')
if device_id == device.device_id:
device.handle_event(data)
else:
_LOGGER.warning("Received message for unknown device.")
msg_q.task_done()
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jalmeroth/pymusiccast | pymusiccast/helpers.py | socket_worker | def socket_worker(sock, msg_q):
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"""Socket Loop that fills message queue"""
_LOGGER.debug("Starting Socket Thread.")
while True:
try:
data, addr = sock.recvfrom(1024) # buffer size is 1024 bytes
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inveniosoftware-contrib/json-merger | json_merger/graph_builder.py | toposort | def toposort(graph, pick_first='head'):
"""Toplogically sorts a list match graph.
Tries to perform a topological sort using as tiebreaker the pick_first
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"""
in_deg = {}
for node, next_nodes in six.iteritems(graph):
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continue
in_deg[next_node] = in_deg.get(next_node, 0) + 1
stk = [FIRST]
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visited = set()
while stk:
node = stk.pop()
visited.add(node)
if node != FIRST:
ordered.append(node)
traversal = _get_traversal(graph.get(node, BeforeNodes()), pick_first)
for next_node in traversal:
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continue
if next_node in visited:
raise ValueError('Graph has a cycle')
in_deg[next_node] -= 1
if in_deg[next_node] == 0:
stk.append(next_node)
# Nodes may not be walked because they don't reach in degree 0.
if len(ordered) != len(graph) - 1:
raise ValueError('Graph has a cycle')
return ordered | python | def toposort(graph, pick_first='head'):
"""Toplogically sorts a list match graph.
Tries to perform a topological sort using as tiebreaker the pick_first
argument. If the graph contains cycles, raise ValueError.
"""
in_deg = {}
for node, next_nodes in six.iteritems(graph):
for next_node in [next_nodes.head_node, next_nodes.update_node]:
if next_node is None:
continue
in_deg[next_node] = in_deg.get(next_node, 0) + 1
stk = [FIRST]
ordered = []
visited = set()
while stk:
node = stk.pop()
visited.add(node)
if node != FIRST:
ordered.append(node)
traversal = _get_traversal(graph.get(node, BeforeNodes()), pick_first)
for next_node in traversal:
if next_node is None:
continue
if next_node in visited:
raise ValueError('Graph has a cycle')
in_deg[next_node] -= 1
if in_deg[next_node] == 0:
stk.append(next_node)
# Nodes may not be walked because they don't reach in degree 0.
if len(ordered) != len(graph) - 1:
raise ValueError('Graph has a cycle')
return ordered | [
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inveniosoftware-contrib/json-merger | json_merger/graph_builder.py | sort_cyclic_graph_best_effort | def sort_cyclic_graph_best_effort(graph, pick_first='head'):
"""Fallback for cases in which the graph has cycles."""
ordered = []
visited = set()
# Go first on the pick_first chain then go back again on the others
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return ordered | python | def sort_cyclic_graph_best_effort(graph, pick_first='head'):
"""Fallback for cases in which the graph has cycles."""
ordered = []
visited = set()
# Go first on the pick_first chain then go back again on the others
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fst_attr, snd_attr = ('update_node', 'head_node')
current = FIRST
while current is not None:
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current = getattr(graph[current], fst_attr)
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current = FIRST
while current is not None:
visited.add(current)
current = getattr(graph[current], snd_attr)
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ellethee/argparseinator | examples/httprequest.py | get | def get(url):
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writeln("Getting data from url", url)
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"""Retrieve an url."""
writeln("Getting data from url", url)
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"""Post data to an url."""
data = {b[0]: b[1] for b in [a.split("=") for a in var]}
writeln("Sending data to url", url)
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eleme/meepo | meepo/utils.py | cast_bytes | def cast_bytes(s, encoding='utf8', errors='strict'):
"""cast str or bytes to bytes"""
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elif isinstance(s, str):
return s.encode(encoding, errors)
else:
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"""cast str or bytes to bytes"""
if isinstance(s, bytes):
return s
elif isinstance(s, str):
return s.encode(encoding, errors)
else:
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eleme/meepo | meepo/utils.py | cast_datetime | def cast_datetime(ts, fmt=None):
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if fmt:
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"""cast timestamp to datetime or date str"""
dt = datetime.datetime.fromtimestamp(ts)
if fmt:
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return dt | [
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thautwarm/Redy | Redy/Magic/Classic.py | singleton_init_by | def singleton_init_by(init_fn=None):
"""
>>> from Redy.Magic.Classic import singleton
>>> @singleton
>>> class S:
>>> pass
>>> assert isinstance(S, S)
"""
if not init_fn:
def wrap_init(origin_init):
return origin_init
else:
def wrap_init(origin_init):
def __init__(self):
origin_init(self)
init_fn(self)
return __init__
def inner(cls_def: type):
if not hasattr(cls_def, '__instancecheck__') or isinstance(cls_def.__instancecheck__,
(types.BuiltinMethodType, _slot_wrapper)):
def __instancecheck__(self, instance):
return instance is self
cls_def.__instancecheck__ = __instancecheck__
_origin_init = cls_def.__init__
cls_def.__init__ = wrap_init(_origin_init)
return cls_def()
return inner | python | def singleton_init_by(init_fn=None):
"""
>>> from Redy.Magic.Classic import singleton
>>> @singleton
>>> class S:
>>> pass
>>> assert isinstance(S, S)
"""
if not init_fn:
def wrap_init(origin_init):
return origin_init
else:
def wrap_init(origin_init):
def __init__(self):
origin_init(self)
init_fn(self)
return __init__
def inner(cls_def: type):
if not hasattr(cls_def, '__instancecheck__') or isinstance(cls_def.__instancecheck__,
(types.BuiltinMethodType, _slot_wrapper)):
def __instancecheck__(self, instance):
return instance is self
cls_def.__instancecheck__ = __instancecheck__
_origin_init = cls_def.__init__
cls_def.__init__ = wrap_init(_origin_init)
return cls_def()
return inner | [
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>>> @singleton
>>> class S:
>>> pass
>>> assert isinstance(S, S) | [
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thautwarm/Redy | Redy/Magic/Classic.py | const_return | def const_return(func):
"""
>>> from Redy.Magic.Classic import const_return
>>> @const_return
>>> def f(x):
>>> return x
>>> r1 = f(1)
>>> assert r1 is 1 and r1 is f(2)
"""
result = _undef
def ret_call(*args, **kwargs):
nonlocal result
if result is _undef:
result = func(*args, **kwargs)
return result
return ret_call | python | def const_return(func):
"""
>>> from Redy.Magic.Classic import const_return
>>> @const_return
>>> def f(x):
>>> return x
>>> r1 = f(1)
>>> assert r1 is 1 and r1 is f(2)
"""
result = _undef
def ret_call(*args, **kwargs):
nonlocal result
if result is _undef:
result = func(*args, **kwargs)
return result
return ret_call | [
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>>> @const_return
>>> def f(x):
>>> return x
>>> r1 = f(1)
>>> assert r1 is 1 and r1 is f(2) | [
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thautwarm/Redy | Redy/Magic/Classic.py | execute | def execute(func: types.FunctionType):
"""
>>> from Redy.Magic.Classic import execute
>>> x = 1
>>> @execute
>>> def f(x = x) -> int:
>>> return x + 1
>>> assert f is 2
"""
spec = getfullargspec(func)
default = spec.defaults
arg_cursor = 0
def get_item(name):
nonlocal arg_cursor
ctx = func.__globals__
value = ctx.get(name, _undef)
if value is _undef:
try:
value = default[arg_cursor]
arg_cursor += 1
except (TypeError, IndexError):
raise ValueError(f"Current context has no variable `{name}`")
return value
return func(*(get_item(arg_name) for arg_name in spec.args)) | python | def execute(func: types.FunctionType):
"""
>>> from Redy.Magic.Classic import execute
>>> x = 1
>>> @execute
>>> def f(x = x) -> int:
>>> return x + 1
>>> assert f is 2
"""
spec = getfullargspec(func)
default = spec.defaults
arg_cursor = 0
def get_item(name):
nonlocal arg_cursor
ctx = func.__globals__
value = ctx.get(name, _undef)
if value is _undef:
try:
value = default[arg_cursor]
arg_cursor += 1
except (TypeError, IndexError):
raise ValueError(f"Current context has no variable `{name}`")
return value
return func(*(get_item(arg_name) for arg_name in spec.args)) | [
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>>> x = 1
>>> @execute
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>>> return x + 1
>>> assert f is 2 | [
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thautwarm/Redy | Redy/Magic/Classic.py | cast | def cast(cast_fn):
"""
>>> from Redy.Magic.Classic import cast
>>> @cast(list)
>>> def f(x):
>>> for each in x:
>>> if each % 2:
>>> continue
>>> yield each
"""
def inner(func):
def call(*args, **kwargs):
return cast_fn(func(*args, **kwargs))
functools.update_wrapper(call, func)
return call
return inner | python | def cast(cast_fn):
"""
>>> from Redy.Magic.Classic import cast
>>> @cast(list)
>>> def f(x):
>>> for each in x:
>>> if each % 2:
>>> continue
>>> yield each
"""
def inner(func):
def call(*args, **kwargs):
return cast_fn(func(*args, **kwargs))
functools.update_wrapper(call, func)
return call
return inner | [
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thautwarm/Redy | Redy/Async/Delegate.py | Delegate.insert | def insert(self, action: Action, where: 'Union[int, Delegate.Where]'):
"""
add a new action with specific priority
>>> delegate: Delegate
>>> delegate.insert(lambda task, product, ctx: print(product), where=Delegate.Where.after(lambda action: action.__name__ == 'myfunc'))
the codes above inserts an action after the specific action whose name is 'myfunc'.
"""
if isinstance(where, int):
self.actions.insert(where, action)
return
here = where(self.actions)
self.actions.insert(here, action) | python | def insert(self, action: Action, where: 'Union[int, Delegate.Where]'):
"""
add a new action with specific priority
>>> delegate: Delegate
>>> delegate.insert(lambda task, product, ctx: print(product), where=Delegate.Where.after(lambda action: action.__name__ == 'myfunc'))
the codes above inserts an action after the specific action whose name is 'myfunc'.
"""
if isinstance(where, int):
self.actions.insert(where, action)
return
here = where(self.actions)
self.actions.insert(here, action) | [
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>>> delegate: Delegate
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inveniosoftware-contrib/json-merger | json_merger/dict_merger.py | patch_to_conflict_set | def patch_to_conflict_set(patch):
"""Translates a dictdiffer conflict into a json_merger one."""
patch_type, patched_key, value = patch
if isinstance(patched_key, list):
key_path = tuple(patched_key)
else:
key_path = tuple(k for k in patched_key.split('.') if k)
conflicts = set()
if patch_type == REMOVE:
conflict_type = ConflictType.REMOVE_FIELD
for key, obj in value:
conflicts.add(Conflict(conflict_type, key_path + (key, ), None))
elif patch_type == CHANGE:
conflict_type = ConflictType.SET_FIELD
first_val, second_val = value
conflicts.add(Conflict(conflict_type, key_path, second_val))
elif patch_type == ADD:
conflict_type = ConflictType.SET_FIELD
for key, obj in value:
conflicts.add(Conflict(conflict_type, key_path + (key, ), obj))
return conflicts | python | def patch_to_conflict_set(patch):
"""Translates a dictdiffer conflict into a json_merger one."""
patch_type, patched_key, value = patch
if isinstance(patched_key, list):
key_path = tuple(patched_key)
else:
key_path = tuple(k for k in patched_key.split('.') if k)
conflicts = set()
if patch_type == REMOVE:
conflict_type = ConflictType.REMOVE_FIELD
for key, obj in value:
conflicts.add(Conflict(conflict_type, key_path + (key, ), None))
elif patch_type == CHANGE:
conflict_type = ConflictType.SET_FIELD
first_val, second_val = value
conflicts.add(Conflict(conflict_type, key_path, second_val))
elif patch_type == ADD:
conflict_type = ConflictType.SET_FIELD
for key, obj in value:
conflicts.add(Conflict(conflict_type, key_path + (key, ), obj))
return conflicts | [
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inveniosoftware-contrib/json-merger | json_merger/dict_merger.py | SkipListsMerger.merge | def merge(self):
"""Perform merge of head and update starting from root."""
if isinstance(self.head, dict) and isinstance(self.update, dict):
if not isinstance(self.root, dict):
self.root = {}
self._merge_dicts()
else:
self._merge_base_values()
if self.conflict_set:
raise MergeError('Dictdiffer Errors', self.conflicts) | python | def merge(self):
"""Perform merge of head and update starting from root."""
if isinstance(self.head, dict) and isinstance(self.update, dict):
if not isinstance(self.root, dict):
self.root = {}
self._merge_dicts()
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dpmcmlxxvi/pixelscan | pixelscan/pixelscan.py | chebyshev | def chebyshev(point1, point2):
"""Computes distance between 2D points using chebyshev metric
:param point1: 1st point
:type point1: list
:param point2: 2nd point
:type point2: list
:returns: Distance between point1 and point2
:rtype: float
"""
return max(abs(point1[0] - point2[0]), abs(point1[1] - point2[1])) | python | def chebyshev(point1, point2):
"""Computes distance between 2D points using chebyshev metric
:param point1: 1st point
:type point1: list
:param point2: 2nd point
:type point2: list
:returns: Distance between point1 and point2
:rtype: float
"""
return max(abs(point1[0] - point2[0]), abs(point1[1] - point2[1])) | [
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dpmcmlxxvi/pixelscan | pixelscan/pixelscan.py | circlescan | def circlescan(x0, y0, r1, r2):
"""Scan pixels in a circle pattern around a center point
:param x0: Center x-coordinate
:type x0: float
:param y0: Center y-coordinate
:type y0: float
:param r1: Initial radius
:type r1: float
:param r2: Final radius
:type r2: float
:returns: Coordinate generator
:rtype: function
"""
# Validate inputs
if r1 < 0: raise ValueError("Initial radius must be non-negative")
if r2 < 0: raise ValueError("Final radius must be non-negative")
# List of pixels visited in previous diameter
previous = []
# Scan distances outward (1) or inward (-1)
rstep = 1 if r2 >= r1 else -1
for distance in range(r1, r2 + rstep, rstep):
if distance == 0:
yield x0, y0
else:
# Computes points for first octant and the rotate by multiples of
# 45 degrees to compute the other octants
a = 0.707107
rotations = {0: [[ 1, 0], [ 0, 1]],
1: [[ a, a], [-a, a]],
2: [[ 0, 1], [-1, 0]],
3: [[-a, a], [-a,-a]],
4: [[-1, 0], [ 0,-1]],
5: [[-a,-a], [ a,-a]],
6: [[ 0,-1], [ 1, 0]],
7: [[ a,-a], [ a, a]]}
nangles = len(rotations)
# List of pixels visited in current diameter
current = []
for angle in range(nangles):
x = 0
y = distance
d = 1 - distance
while x < y:
xr = rotations[angle][0][0]*x + rotations[angle][0][1]*y
yr = rotations[angle][1][0]*x + rotations[angle][1][1]*y
xr = x0 + xr
yr = y0 + yr
# First check if point was in previous diameter
# since our scan pattern can lead to duplicates in
# neighboring diameters
point = (int(round(xr)), int(round(yr)))
if point not in previous:
yield xr, yr
current.append(point)
# Move pixel according to circle constraint
if (d < 0):
d += 3 + 2 * x
else:
d += 5 - 2 * (y-x)
y -= 1
x += 1
previous = current | python | def circlescan(x0, y0, r1, r2):
"""Scan pixels in a circle pattern around a center point
:param x0: Center x-coordinate
:type x0: float
:param y0: Center y-coordinate
:type y0: float
:param r1: Initial radius
:type r1: float
:param r2: Final radius
:type r2: float
:returns: Coordinate generator
:rtype: function
"""
# Validate inputs
if r1 < 0: raise ValueError("Initial radius must be non-negative")
if r2 < 0: raise ValueError("Final radius must be non-negative")
# List of pixels visited in previous diameter
previous = []
# Scan distances outward (1) or inward (-1)
rstep = 1 if r2 >= r1 else -1
for distance in range(r1, r2 + rstep, rstep):
if distance == 0:
yield x0, y0
else:
# Computes points for first octant and the rotate by multiples of
# 45 degrees to compute the other octants
a = 0.707107
rotations = {0: [[ 1, 0], [ 0, 1]],
1: [[ a, a], [-a, a]],
2: [[ 0, 1], [-1, 0]],
3: [[-a, a], [-a,-a]],
4: [[-1, 0], [ 0,-1]],
5: [[-a,-a], [ a,-a]],
6: [[ 0,-1], [ 1, 0]],
7: [[ a,-a], [ a, a]]}
nangles = len(rotations)
# List of pixels visited in current diameter
current = []
for angle in range(nangles):
x = 0
y = distance
d = 1 - distance
while x < y:
xr = rotations[angle][0][0]*x + rotations[angle][0][1]*y
yr = rotations[angle][1][0]*x + rotations[angle][1][1]*y
xr = x0 + xr
yr = y0 + yr
# First check if point was in previous diameter
# since our scan pattern can lead to duplicates in
# neighboring diameters
point = (int(round(xr)), int(round(yr)))
if point not in previous:
yield xr, yr
current.append(point)
# Move pixel according to circle constraint
if (d < 0):
d += 3 + 2 * x
else:
d += 5 - 2 * (y-x)
y -= 1
x += 1
previous = current | [
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:param r1: Initial radius
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:param r2: Final radius
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dpmcmlxxvi/pixelscan | pixelscan/pixelscan.py | gridscan | def gridscan(xi, yi, xf, yf, stepx=1, stepy=1):
"""Scan pixels in a grid pattern along the x-coordinate then y-coordinate
:param xi: Initial x-coordinate
:type xi: int
:param yi: Initial y-coordinate
:type yi: int
:param xf: Final x-coordinate
:type xf: int
:param yf: Final y-coordinate
:type yf: int
:param stepx: Step size in x-coordinate
:type stepx: int
:param stepy: Step size in y-coordinate
:type stepy: int
:returns: Coordinate generator
:rtype: function
"""
if stepx <= 0: raise ValueError("X-step must be positive")
if stepy <= 0: raise ValueError("Y-step must be positive")
# Determine direction to move
dx = stepx if xf >= xi else -stepx
dy = stepy if yf >= yi else -stepy
for y in range(yi, yf + dy, dy):
for x in range(xi, xf + dx, dx):
yield x, y | python | def gridscan(xi, yi, xf, yf, stepx=1, stepy=1):
"""Scan pixels in a grid pattern along the x-coordinate then y-coordinate
:param xi: Initial x-coordinate
:type xi: int
:param yi: Initial y-coordinate
:type yi: int
:param xf: Final x-coordinate
:type xf: int
:param yf: Final y-coordinate
:type yf: int
:param stepx: Step size in x-coordinate
:type stepx: int
:param stepy: Step size in y-coordinate
:type stepy: int
:returns: Coordinate generator
:rtype: function
"""
if stepx <= 0: raise ValueError("X-step must be positive")
if stepy <= 0: raise ValueError("Y-step must be positive")
# Determine direction to move
dx = stepx if xf >= xi else -stepx
dy = stepy if yf >= yi else -stepy
for y in range(yi, yf + dy, dy):
for x in range(xi, xf + dx, dx):
yield x, y | [
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dpmcmlxxvi/pixelscan | pixelscan/pixelscan.py | ringscan | def ringscan(x0, y0, r1, r2, metric=chebyshev):
"""Scan pixels in a ring pattern around a center point clockwise
:param x0: Center x-coordinate
:type x0: int
:param y0: Center y-coordinate
:type y0: int
:param r1: Initial radius
:type r1: int
:param r2: Final radius
:type r2: int
:param metric: Distance metric
:type metric: function
:returns: Coordinate generator
:rtype: function
"""
# Validate inputs
if r1 < 0: raise ValueError("Initial radius must be non-negative")
if r2 < 0: raise ValueError("Final radius must be non-negative")
if not hasattr(metric, "__call__"): raise TypeError("Metric not callable")
# Define clockwise step directions
direction = 0
steps = {0: [ 1, 0],
1: [ 1,-1],
2: [ 0,-1],
3: [-1,-1],
4: [-1, 0],
5: [-1, 1],
6: [ 0, 1],
7: [ 1, 1]}
nsteps = len(steps)
center = [x0, y0]
# Scan distances outward (1) or inward (-1)
rstep = 1 if r2 >= r1 else -1
for distance in range(r1, r2 + rstep, rstep):
initial = [x0, y0 + distance]
current = initial
# Number of tries to find a valid neighrbor
ntrys = 0
while True:
# Short-circuit special case
if distance == 0:
yield current[0], current[1]
break
# Try and take a step and check if still within distance
nextpoint = [current[i] + steps[direction][i] for i in range(2)]
if metric(center, nextpoint) != distance:
# Check if we tried all step directions and failed
ntrys += 1
if ntrys == nsteps:
break
# Try the next direction
direction = (direction + 1) % nsteps
continue
ntrys = 0
yield current[0], current[1]
# Check if we have come all the way around
current = nextpoint
if current == initial:
break
# Check if we tried all step directions and failed
if ntrys == nsteps:
break | python | def ringscan(x0, y0, r1, r2, metric=chebyshev):
"""Scan pixels in a ring pattern around a center point clockwise
:param x0: Center x-coordinate
:type x0: int
:param y0: Center y-coordinate
:type y0: int
:param r1: Initial radius
:type r1: int
:param r2: Final radius
:type r2: int
:param metric: Distance metric
:type metric: function
:returns: Coordinate generator
:rtype: function
"""
# Validate inputs
if r1 < 0: raise ValueError("Initial radius must be non-negative")
if r2 < 0: raise ValueError("Final radius must be non-negative")
if not hasattr(metric, "__call__"): raise TypeError("Metric not callable")
# Define clockwise step directions
direction = 0
steps = {0: [ 1, 0],
1: [ 1,-1],
2: [ 0,-1],
3: [-1,-1],
4: [-1, 0],
5: [-1, 1],
6: [ 0, 1],
7: [ 1, 1]}
nsteps = len(steps)
center = [x0, y0]
# Scan distances outward (1) or inward (-1)
rstep = 1 if r2 >= r1 else -1
for distance in range(r1, r2 + rstep, rstep):
initial = [x0, y0 + distance]
current = initial
# Number of tries to find a valid neighrbor
ntrys = 0
while True:
# Short-circuit special case
if distance == 0:
yield current[0], current[1]
break
# Try and take a step and check if still within distance
nextpoint = [current[i] + steps[direction][i] for i in range(2)]
if metric(center, nextpoint) != distance:
# Check if we tried all step directions and failed
ntrys += 1
if ntrys == nsteps:
break
# Try the next direction
direction = (direction + 1) % nsteps
continue
ntrys = 0
yield current[0], current[1]
# Check if we have come all the way around
current = nextpoint
if current == initial:
break
# Check if we tried all step directions and failed
if ntrys == nsteps:
break | [
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dpmcmlxxvi/pixelscan | pixelscan/pixelscan.py | snakescan | def snakescan(xi, yi, xf, yf):
"""Scan pixels in a snake pattern along the x-coordinate then y-coordinate
:param xi: Initial x-coordinate
:type xi: int
:param yi: Initial y-coordinate
:type yi: int
:param xf: Final x-coordinate
:type xf: int
:param yf: Final y-coordinate
:type yf: int
:returns: Coordinate generator
:rtype: function
"""
# Determine direction to move
dx = 1 if xf >= xi else -1
dy = 1 if yf >= yi else -1
# Scan pixels first along x-coordinate then y-coordinate and flip
# x-direction when the end of the line is reached
x, xa, xb = xi, xi, xf
for y in range(yi, yf + dy, dy):
for x in range(xa, xb + dx, dx):
yield x, y
# Swap x-direction
if x == xa or x == xb:
dx *= -1
xa, xb = xb, xa | python | def snakescan(xi, yi, xf, yf):
"""Scan pixels in a snake pattern along the x-coordinate then y-coordinate
:param xi: Initial x-coordinate
:type xi: int
:param yi: Initial y-coordinate
:type yi: int
:param xf: Final x-coordinate
:type xf: int
:param yf: Final y-coordinate
:type yf: int
:returns: Coordinate generator
:rtype: function
"""
# Determine direction to move
dx = 1 if xf >= xi else -1
dy = 1 if yf >= yi else -1
# Scan pixels first along x-coordinate then y-coordinate and flip
# x-direction when the end of the line is reached
x, xa, xb = xi, xi, xf
for y in range(yi, yf + dy, dy):
for x in range(xa, xb + dx, dx):
yield x, y
# Swap x-direction
if x == xa or x == xb:
dx *= -1
xa, xb = xb, xa | [
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dpmcmlxxvi/pixelscan | pixelscan/pixelscan.py | walkscan | def walkscan(x0, y0, xn=0.25, xp=0.25, yn=0.25, yp=0.25):
"""Scan pixels in a random walk pattern with given step probabilities. The
random walk will continue indefinitely unless a skip transformation is used
with the 'stop' parameter set or a clip transformation is used with the
'abort' parameter set to True. The probabilities are normalized to sum to 1.
:param x0: Initial x-coordinate
:type x0: int
:param y0: Initial y-coordinate
:type y0: int
:param xn: Probability of moving in the negative x direction
:type xn: float
:param xp: Probability of moving in the positive x direction
:type xp: float
:param yn: Probability of moving in the negative y direction
:type yn: float
:param yp: Probability of moving in the positive y direction
:type yp: float
"""
# Validate inputs
if xn < 0: raise ValueError("Negative x probabilty must be non-negative")
if xp < 0: raise ValueError("Positive x probabilty must be non-negative")
if yn < 0: raise ValueError("Negative y probabilty must be non-negative")
if yp < 0: raise ValueError("Positive y probabilty must be non-negative")
# Compute normalized probability
total = xp + xn + yp + yn
xn /= total
xp /= total
yn /= total
yp /= total
# Compute cumulative probability
cxn = xn
cxp = cxn + xp
cyn = cxp + yn
# Initialize position
x, y = x0, y0
while True:
yield x, y
# Take random step
probability = random.random()
if probability <= cxn:
x -= 1
elif probability <= cxp:
x += 1
elif probability <= cyn:
y -= 1
else:
y += 1 | python | def walkscan(x0, y0, xn=0.25, xp=0.25, yn=0.25, yp=0.25):
"""Scan pixels in a random walk pattern with given step probabilities. The
random walk will continue indefinitely unless a skip transformation is used
with the 'stop' parameter set or a clip transformation is used with the
'abort' parameter set to True. The probabilities are normalized to sum to 1.
:param x0: Initial x-coordinate
:type x0: int
:param y0: Initial y-coordinate
:type y0: int
:param xn: Probability of moving in the negative x direction
:type xn: float
:param xp: Probability of moving in the positive x direction
:type xp: float
:param yn: Probability of moving in the negative y direction
:type yn: float
:param yp: Probability of moving in the positive y direction
:type yp: float
"""
# Validate inputs
if xn < 0: raise ValueError("Negative x probabilty must be non-negative")
if xp < 0: raise ValueError("Positive x probabilty must be non-negative")
if yn < 0: raise ValueError("Negative y probabilty must be non-negative")
if yp < 0: raise ValueError("Positive y probabilty must be non-negative")
# Compute normalized probability
total = xp + xn + yp + yn
xn /= total
xp /= total
yn /= total
yp /= total
# Compute cumulative probability
cxn = xn
cxp = cxn + xp
cyn = cxp + yn
# Initialize position
x, y = x0, y0
while True:
yield x, y
# Take random step
probability = random.random()
if probability <= cxn:
x -= 1
elif probability <= cxp:
x += 1
elif probability <= cyn:
y -= 1
else:
y += 1 | [
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basecrm/basecrm-python | basecrm/configuration.py | Configuration.validate | def validate(self):
"""Validates whether a configuration is valid.
:rtype: bool
:raises ConfigurationError: if no ``access_token`` provided.
:raises ConfigurationError: if provided ``access_token`` is invalid - contains disallowed characters.
:raises ConfigurationError: if provided ``access_token`` is invalid - has invalid length.
:raises ConfigurationError: if provided ``base_url`` is invalid.
"""
if self.access_token is None:
raise ConfigurationError('No access token provided. '
'Set your access token during client initialization using: '
'"basecrm.Client(access_token= <YOUR_PERSONAL_ACCESS_TOKEN>)"')
if re.search(r'\s', self.access_token):
raise ConfigurationError('Provided access token is invalid '
'as it contains disallowed characters. '
'Please double-check you access token.')
if len(self.access_token) != 64:
raise ConfigurationError('Provided access token is invalid '
'as it has invalid length. '
'Please double-check your access token.')
if not self.base_url or not re.match(self.URL_REGEXP, self.base_url):
raise ConfigurationError('Provided base url is invalid '
'as it not a valid URI. '
'Please make sure it incldues the schema part, '
'both http and https are accepted, '
'and the hierarchical part')
return True | python | def validate(self):
"""Validates whether a configuration is valid.
:rtype: bool
:raises ConfigurationError: if no ``access_token`` provided.
:raises ConfigurationError: if provided ``access_token`` is invalid - contains disallowed characters.
:raises ConfigurationError: if provided ``access_token`` is invalid - has invalid length.
:raises ConfigurationError: if provided ``base_url`` is invalid.
"""
if self.access_token is None:
raise ConfigurationError('No access token provided. '
'Set your access token during client initialization using: '
'"basecrm.Client(access_token= <YOUR_PERSONAL_ACCESS_TOKEN>)"')
if re.search(r'\s', self.access_token):
raise ConfigurationError('Provided access token is invalid '
'as it contains disallowed characters. '
'Please double-check you access token.')
if len(self.access_token) != 64:
raise ConfigurationError('Provided access token is invalid '
'as it has invalid length. '
'Please double-check your access token.')
if not self.base_url or not re.match(self.URL_REGEXP, self.base_url):
raise ConfigurationError('Provided base url is invalid '
'as it not a valid URI. '
'Please make sure it incldues the schema part, '
'both http and https are accepted, '
'and the hierarchical part')
return True | [
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basecrm/basecrm-python | basecrm/sync.py | SyncService.start | def start(self, device_uuid):
"""
Start synchronization flow
Starts a new synchronization session.
This is the first endpoint to call, in order to start a new synchronization session.
:calls: ``post /sync/start``
:param string device_uuid: Device's UUID for which to perform synchronization.
:return: Dictionary that support attribute-style access and represents newely created Synchronization Session or None.
:rtype: dict
"""
status_code, _, session = self.http_client.post('/sync/start',
body=None,
headers=self.build_headers(device_uuid))
return None if status_code == 204 else session | python | def start(self, device_uuid):
"""
Start synchronization flow
Starts a new synchronization session.
This is the first endpoint to call, in order to start a new synchronization session.
:calls: ``post /sync/start``
:param string device_uuid: Device's UUID for which to perform synchronization.
:return: Dictionary that support attribute-style access and represents newely created Synchronization Session or None.
:rtype: dict
"""
status_code, _, session = self.http_client.post('/sync/start',
body=None,
headers=self.build_headers(device_uuid))
return None if status_code == 204 else session | [
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basecrm/basecrm-python | basecrm/sync.py | SyncService.fetch | def fetch(self, device_uuid, session_id):
"""
Get data from queue
Fetch fresh data from the named queue.
Using session identifier you call continously the `#fetch` method to drain the named queue.
:calls: ``get /sync/{session_id}/queues/main``
:param string device_uuid: Device's UUID for which to perform synchronization.
:param string session_id: Unique identifier of a synchronization session.
:param string queue: (optional) Queue name.
:return: List of dictionaries that support attribute-style access,
which represent resources (data) and associated meta data (meta).
Empty list if there is no more data to synchronize.
:rtype: list
"""
status_code, _, root = self.http_client.get("/sync/{session_id}/queues/main".format(session_id=session_id),
params=None,
headers=self.build_headers(device_uuid),
raw=True)
return [] if status_code == 204 else root['items'] | python | def fetch(self, device_uuid, session_id):
"""
Get data from queue
Fetch fresh data from the named queue.
Using session identifier you call continously the `#fetch` method to drain the named queue.
:calls: ``get /sync/{session_id}/queues/main``
:param string device_uuid: Device's UUID for which to perform synchronization.
:param string session_id: Unique identifier of a synchronization session.
:param string queue: (optional) Queue name.
:return: List of dictionaries that support attribute-style access,
which represent resources (data) and associated meta data (meta).
Empty list if there is no more data to synchronize.
:rtype: list
"""
status_code, _, root = self.http_client.get("/sync/{session_id}/queues/main".format(session_id=session_id),
params=None,
headers=self.build_headers(device_uuid),
raw=True)
return [] if status_code == 204 else root['items'] | [
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basecrm/basecrm-python | basecrm/sync.py | SyncService.ack | def ack(self, device_uuid, ack_keys):
"""
Acknowledge received data
Send acknowledgement keys to let know the Sync service which data you have.
As you fetch new data, you need to send acknowledgement keys.
:calls: ``post /sync/ack``
:param string device_uuid: Device's UUID for which to perform synchronization.
:param list ack_keys: List of acknowledgement keys.
:return: True if the operation succeeded.
:rtype: bool
"""
attributes = {'ack_keys': ack_keys}
status_code, _, _ = self.http_client.post('/sync/ack',
body=attributes,
headers=self.build_headers(device_uuid))
return status_code == 202 | python | def ack(self, device_uuid, ack_keys):
"""
Acknowledge received data
Send acknowledgement keys to let know the Sync service which data you have.
As you fetch new data, you need to send acknowledgement keys.
:calls: ``post /sync/ack``
:param string device_uuid: Device's UUID for which to perform synchronization.
:param list ack_keys: List of acknowledgement keys.
:return: True if the operation succeeded.
:rtype: bool
"""
attributes = {'ack_keys': ack_keys}
status_code, _, _ = self.http_client.post('/sync/ack',
body=attributes,
headers=self.build_headers(device_uuid))
return status_code == 202 | [
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Send acknowledgement keys to let know the Sync service which data you have.
As you fetch new data, you need to send acknowledgement keys.
:calls: ``post /sync/ack``
:param string device_uuid: Device's UUID for which to perform synchronization.
:param list ack_keys: List of acknowledgement keys.
:return: True if the operation succeeded.
:rtype: bool | [
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] | 7c1cf97dbaba8aeb9ff89f8a54f945a8702349f6 | https://github.com/basecrm/basecrm-python/blob/7c1cf97dbaba8aeb9ff89f8a54f945a8702349f6/basecrm/sync.py#L61-L80 | train | 4,998 |
basecrm/basecrm-python | basecrm/sync.py | Sync.fetch | def fetch(self, callback):
"""
Perform a full synchronization flow.
.. code-block:: python
:linenos:
>>> client = basecrm.Client(access_token='<YOUR_PERSONAL_ACCESS_TOKEN>')
>>> sync = basecrm.Sync(client=client, device_uuid='<YOUR_DEVICES_UUID>')
>>> sync.fetch(lambda meta, data: basecrm.Sync.ACK)
:param callback: Callback that will be called for every item in a queue.
Takes two input arguments: synchronization meta data and assodicated data.
It must return either ack or nack.
"""
# Set up a new synchronization session for a given device's UUID
session = self.client.sync.start(self.device_uuid)
# Check if there is anything to synchronize
if session is None or 'id' not in session:
return
# Drain the main queue until there is no more data (empty array)
while True:
# Fetch the main queue
queue_items = self.client.sync.fetch(self.device_uuid, session['id'])
# nothing more to synchronize ?
if not queue_items:
break
# let client know about both data and meta
ack_keys = []
for item in queue_items:
if callback(item['meta'], item['data']):
ack_keys.append(item['meta']['sync']['ack_key'])
# As we fetch new data, we need to send acknowledgement keys
# if any ..
if ack_keys:
self.client.sync.ack(self.device_uuid, ack_keys) | python | def fetch(self, callback):
"""
Perform a full synchronization flow.
.. code-block:: python
:linenos:
>>> client = basecrm.Client(access_token='<YOUR_PERSONAL_ACCESS_TOKEN>')
>>> sync = basecrm.Sync(client=client, device_uuid='<YOUR_DEVICES_UUID>')
>>> sync.fetch(lambda meta, data: basecrm.Sync.ACK)
:param callback: Callback that will be called for every item in a queue.
Takes two input arguments: synchronization meta data and assodicated data.
It must return either ack or nack.
"""
# Set up a new synchronization session for a given device's UUID
session = self.client.sync.start(self.device_uuid)
# Check if there is anything to synchronize
if session is None or 'id' not in session:
return
# Drain the main queue until there is no more data (empty array)
while True:
# Fetch the main queue
queue_items = self.client.sync.fetch(self.device_uuid, session['id'])
# nothing more to synchronize ?
if not queue_items:
break
# let client know about both data and meta
ack_keys = []
for item in queue_items:
if callback(item['meta'], item['data']):
ack_keys.append(item['meta']['sync']['ack_key'])
# As we fetch new data, we need to send acknowledgement keys
# if any ..
if ack_keys:
self.client.sync.ack(self.device_uuid, ack_keys) | [
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.. code-block:: python
:linenos:
>>> client = basecrm.Client(access_token='<YOUR_PERSONAL_ACCESS_TOKEN>')
>>> sync = basecrm.Sync(client=client, device_uuid='<YOUR_DEVICES_UUID>')
>>> sync.fetch(lambda meta, data: basecrm.Sync.ACK)
:param callback: Callback that will be called for every item in a queue.
Takes two input arguments: synchronization meta data and assodicated data.
It must return either ack or nack. | [
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] | 7c1cf97dbaba8aeb9ff89f8a54f945a8702349f6 | https://github.com/basecrm/basecrm-python/blob/7c1cf97dbaba8aeb9ff89f8a54f945a8702349f6/basecrm/sync.py#L117-L159 | train | 4,999 |
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