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- [x] tests added / passed
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- [ ] closes #xxxx
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- [ ] I have asked my usage related question on [StackOverflow](https://stackoverflow.com).
---
#### Question about pandas
I want to roll my own dataframe functionality and syn... | {
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I was seeing these warnings in the dask docs build because dask pulls docstrings from pandas. I think using anonomous links like this should fix it based on https://github.com/sphinx-doc/sphinx/issues/3921
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- [x] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
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Not sure how best to test this - confirmed this now works when run on PyPy, but since we don't test against PyPy the e... | {
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- [ ] tests added / passed
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```python
OutputKey = collections.namedtuple("OutputKey", ["label", "position"])
```
we can do
```python
from typing import NamedTuple
class OutputKey(NamedTuple)
label
position
```
The advantage is that like this we can add type hints to the various elements, such as
```python
fro... | {
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I've loosened the check so that now it only errors / replaces if:
- you imported an object from somewhere in pandas `e.g. from pandas.io.formats import info`
- you also accessed that object as `pd.` or `pandas.` (e.g. `pd.info`... | {
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> type hints are executed at module import time, which is not computationally free.
(from https://www.python.org/dev/peps/pep-0563/), as well as use the more modern syntax of Python
----
This is easy to automate, just checking there's no downsides to putting this everywhere. Should... | {
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```python
>>> from typing import Hashable
>>> isinstance(None, Hashable)
True
```
In old versions of mypy, mypy had a bug and didn't see this, but is has been fixed now.
There are many instances of `Optional[Hashable]` instead of just `Hashable` in the code base, other than in these dicts. ... | {
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Looks like some combination of this, #40474, #40476 are resposible for broken CI. Trying this one first. | {
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df.agg([func])
df.agg({'a': func, 'b': func})
Behave the same. However, the former allows partial failure when a TypeError is raised, whereas the latter does not. Similarly with groupby as well.
While I'd like to focus this... | {
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Allows removal of 4 `#type: ignore` lines
Per split out from #39501 | {
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Troubleshooting the CI | {
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- [ ] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
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https://api.github.com/repos/pandas-dev/pandas/issues/40553 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40553/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40553/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40553/events | https://github.com/pandas-dev/pandas/pull/40553 | 837,056,321 | MDExOlB1bGxSZXF1ZXN0NTk3NDcwMDg1 | 40,553 | CLN: Remove unnecessary code in docs/make.py | {
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`include_api = False` in the if block doesn't have any effect.
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https://api.github.com/repos/pandas-dev/pandas/issues/40555 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40555/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40555/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40555/events | https://github.com/pandas-dev/pandas/pull/40555 | 837,104,561 | MDExOlB1bGxSZXF1ZXN0NTk3NTA1MzEy | 40,555 | BUG: Fix behavior of replace_list with mixed types. | {
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- [x] tests added / passed
- [x] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
- [ ] whatsnew entry
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https://api.github.com/repos/pandas-dev/pandas/issues/40556 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40556/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40556/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40556/events | https://github.com/pandas-dev/pandas/pull/40556 | 837,117,002 | MDExOlB1bGxSZXF1ZXN0NTk3NTE0MjIy | 40,556 | ENH: Pluggable SQL performance via new SQL `engine` keyword | {
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- [x] tests added and passed
- [x] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
- [x] whatsnew entry (in the docstring)
- [ ] whatsnew entry (in the docs)
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- [x] tests added / passed
- [ ] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
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#40250 is an issue which seems to have been fixed in master already through #39446. This ... | {
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https://pandas.pydata.org/pandas-docs/stable/development/contributing.html#creating-a-python-environment-pip
#### Documentation problem
Requirements file fails to install if prerequisites for the pytables package are not met. As far as I can tell these instructions will fail if y... | {
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https://api.github.com/repos/pandas-dev/pandas/issues/40560 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40560/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40560/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40560/events | https://github.com/pandas-dev/pandas/issues/40560 | 837,186,021 | MDU6SXNzdWU4MzcxODYwMjE= | 40,560 | DOC: inconsistency in doc argument types | {
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```
(pandas-dev) ~/pandas$ grep -r array-like --include '*.py' pandas|wc
317 2259 24072
(pandas-dev) ~/pandas$ grep -... | {
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<!-- END pr-commits -->
## Base PullRequest
default branch (https://github.com/pandas-dev/pandas/tree/master)
## Command results
<details>
<summary>Details: </summary>
<details>
<summary><em>add path</em></summary>
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**Note**: Please read [this guide](https://matthewrocklin.com/blog/work/2018/02/28/minimal-bug-reports) detailing how to provide the necessary information for us to reproduce your bug.
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https://api.github.com/repos/pandas-dev/pandas/issues/40572 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40572/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40572/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40572/events | https://github.com/pandas-dev/pandas/pull/40572 | 837,941,986 | MDExOlB1bGxSZXF1ZXN0NTk4MjAxNDU2 | 40,572 | TYP: libtesting, conversion, dtypes, fields | {
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https://api.github.com/repos/pandas-dev/pandas/issues/40573 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40573/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40573/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40573/events | https://github.com/pandas-dev/pandas/issues/40573 | 837,960,562 | MDU6SXNzdWU4Mzc5NjA1NjI= | 40,573 | ENH: Delta Lake file format support | {
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"description": "IO issue... | open | false | null | [] | null | 4 | 2021-03-22T17:39:36Z | 2021-03-25T08:28:01Z | null | NONE | null | I'd love it if Pandas could support Databricks' Delta Lake file format (https://github.com/delta-io/delta). It's a type of versioned parquet file format that supports updates/inserts/deletions.
In the past delta lake run only on spark but now there are connectors where spark is not required:
https://pypi.org/proj... | {
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```
class WeirdEA(ExtensionArray):
@property
def _can_hold_na(self) -> bool:
return some_... | {
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- [x] tests added / passed
- [x] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
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Built on #40546, is a relatively minor change after that. | {
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- [ ] tests added / passed
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https://api.github.com/repos/pandas-dev/pandas/issues/40579 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40579/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40579/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40579/events | https://github.com/pandas-dev/pandas/issues/40579 | 838,639,757 | MDU6SXNzdWU4Mzg2Mzk3NTc= | 40,579 | BUG: groupby + rolling with a non-integer window on multi-index fails- | {
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https://api.github.com/repos/pandas-dev/pandas/issues/40580 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40580/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40580/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40580/events | https://github.com/pandas-dev/pandas/pull/40580 | 838,699,083 | MDExOlB1bGxSZXF1ZXN0NTk4ODM1MDQ2 | 40,580 | COMPAT: make Categorical._codes settable again | {
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This broke dask / fastparquet, so this PR is making it settable again. We could deprecate the setter, though, at the same time. | {
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- [x] I have confirmed this bug exists on the latest version of pandas.
- [x] (optional) I have confirmed this bug exists on the master branch of pandas.
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**Note**: Please read [this guide](https://matthewrocklin.com/blog/work/2018/02/28... | {
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@jbrockmendel this is unfortunate, but short term I think we need to keep the CategoricalBlock class. I am not directly sure what would be the best way to actually deprecate this. | {
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Giving the sample file:
```text
#empty
a,b,c
1,2,3
2,2,3
3,3,3
```
I want to skip text line starting with character '3':
```python
pd.read_csv(filepath, sep=',', comment='3', header=1)
```
#### Problem description
In the resulting dataframe the line starting wit... | {
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<details>
```
before after ratio
[05a0e98a] [16d06e22]
<master> <ref/deduplicate_grp_min_max>
33.0±3ms 33.3±1ms 1.01 gil.ParallelGroupbyMethods.time_loop(2, 'max')
32.2±0.4ms 34.5±3ms 1.07 gil.ParallelGrou... | {
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- [x] I have confirmed this bug exists on the latest version of pandas.
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---
**Note**: Please read [this guide](https://matthewrocklin.com/blog/work/2018/02/28... | {
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"... | open | false | null | [] | null | 3 | 2021-03-23T14:54:02Z | 2021-08-23T04:05:48Z | null | NONE | null | I sometimes receive a `Error tokenizing data. C error: ...` for tables that can normally be read with `read_csv()` without any problems.
Find attached the .csv file [sample.tar.gz](https://github.com/pandas-dev/pandas/files/6190356/sample.tar.gz) for which I can reproduce the problem.
```python
import pandas as ... | {
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"descript... | open | false | null | [] | null | 5 | 2021-03-23T14:54:53Z | 2021-03-24T17:01:09Z | null | NONE | null | import pandas as pd
df = pd.DataFrame(data={'col1': [1, 2], 'col2': [3, 4]})
df.to_parquet('df.parquet',compression=None, index=False)
pd.read_parquet('df.parquet')
I am running this code and it shows index. I set index as False. | {
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"... | open | false | null | [] | null | 1 | 2021-03-23T15:18:02Z | 2021-08-19T02:52:23Z | null | NONE | null | - [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of pandas.
---
#### Code Sample, a copy-pastable example
**test.txt file** :
5 6
7 8
9 10
```python
# Your code here
import pandas as pd
print(pd.__version__)
print(... | {
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- [x] I have asked my usage related question on [StackOverflow](https://stackoverflow.com).
---
#### Question about pandas
```
import pandas as pd
import numpy as np
df = pd... | {
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- [x] tests added / passed
- [x] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
- [x] whatsnew entry
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- [x] closes #34687
- [x] tests added / passed
- [x] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
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- [ ] tests added / passed
- [ ] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
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However, some failure pops up
```
ERROR: Command errored out with exit status 1:
command: /Users/kaiqidong/pyvenv/pandas-dev/bin/python -c 'import sys, setuptools, to... | {
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xref #39776
xref https://github.com/dask/fastparquet/issues/576#issuecomment-805220721 | {
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- [Zoom link](https://nyu.zoom.us/j/98201283174?pwd=d0VoUy9GTDRlVVZ0cCtTK0s4NnlBZz09)
- [Agenda/notes](https://docs.google.com/document/d/1JoiqTdK6gi5W1QiTWrqtTV-rNmIqU3xROgHY5iT4J5g/edit#heading=h.98uhh75g3r7w)
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"followers_url": "https://api.github.com... | 3 | 2021-03-24T02:29:31Z | 2021-03-26T11:24:25Z | 2021-03-25T01:51:54Z | MEMBER | null | - [x] closes #39338
- [x] tests added / passed
- [x] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
- [x] whatsnew entry
Issue comes from the first pair in the `regex` arg hitting the simple replace path, which ... | {
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https://api.github.com/repos/pandas-dev/pandas/issues/40605 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40605/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40605/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40605/events | https://github.com/pandas-dev/pandas/issues/40605 | 839,339,620 | MDU6SXNzdWU4MzkzMzk2MjA= | 40,605 | BUG: color list passed in as list/array/series of colors only picks up first color. | {
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... | open | false | null | [] | null | 1 | 2021-03-24T04:37:24Z | 2021-08-19T02:53:04Z | null | NONE | null | So I found this issue was fixed in 2017 and 2019 respectively, however I think it's back. I spent half the day trying to figure out what I was doing wrong until I stumbled upon this thread/report: https://github.com/pandas-dev/pandas/issues/16822
And it seems like the bug may have crawled its way back in? Sorry if I ... | {
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https://api.github.com/repos/pandas-dev/pandas/issues/40606 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40606/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40606/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40606/events | https://github.com/pandas-dev/pandas/issues/40606 | 839,437,943 | MDU6SXNzdWU4Mzk0Mzc5NDM= | 40,606 | DEPR: deprecate setting Categorical._codes | {
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"descript... | closed | false | null | [] | null | 2 | 2021-03-24T07:44:24Z | 2021-03-30T01:31:34Z | 2021-03-30T01:31:33Z | NONE | null | why my plotnine cant be applied? this is that error, how to solved that?
ImportError: cannot import name 'FrameOrSeriesUnion' from 'pandas._typing' (C:\Users\ASUS\Anaconda3\lib\site-packages\pandas\_typing.py)
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https://api.github.com/repos/pandas-dev/pandas/issues/40608 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40608/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40608/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40608/events | https://github.com/pandas-dev/pandas/issues/40608 | 839,485,332 | MDU6SXNzdWU4Mzk0ODUzMzI= | 40,608 | BUG: join/merge of DataFrame does not keep order of index | {
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The issue may be related to issue #34133
- [x] I have confirmed this bug exists on the latest version of pandas.
---
#### Code Sample, a copy-pastable example
```python
import pandas
idx_single = pandas.RangeIndex(10)
idx_double... | {
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https://api.github.com/repos/pandas-dev/pandas/issues/40609 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40609/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40609/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40609/events | https://github.com/pandas-dev/pandas/pull/40609 | 839,488,135 | MDExOlB1bGxSZXF1ZXN0NTk5NDk1NjI5 | 40,609 | PERF: increase the minimum number of elements to use numexpr for ops from 1e4 to 1e6 | {
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Another take of https://github.com/pandas-dev/pandas/pull/40502, but hopefully now without crashing the tests because of increased memory use. | {
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https://api.github.com/repos/pandas-dev/pandas/issues/40610 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40610/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40610/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40610/events | https://github.com/pandas-dev/pandas/issues/40610 | 839,611,462 | MDU6SXNzdWU4Mzk2MTE0NjI= | 40,610 | DOC: When to Use PandasArray vs ExtensionArray | {
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Mac M1
Python 3.8.2 created using Xcode Command Line Tools for M1 Macs
On trying to install pandas, it failed and it returns very long erorr message starts as below
(py382tf) mgd@MGD ~ % pip install pandas
Collecting pandas
Using cached https://files.pythonhosted.org/... | {
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https://api.github.com/repos/pandas-dev/pandas/issues/40612 | https://api.github.com/repos/pandas-dev/pandas | https://api.github.com/repos/pandas-dev/pandas/issues/40612/labels{/name} | https://api.github.com/repos/pandas-dev/pandas/issues/40612/comments | https://api.github.com/repos/pandas-dev/pandas/issues/40612/events | https://github.com/pandas-dev/pandas/pull/40612 | 839,859,959 | MDExOlB1bGxSZXF1ZXN0NTk5ODA1Nzg2 | 40,612 | TYP: get_indexer | {
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```
error: Overloaded function signatures 1 and 2 overlap with incompatible return types [misc]
```
AFAICT they should be compatible. Am I missing something obvious? | {
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It seems to be blocked by the Assertion Error here, but I can' see a clear reason.
https://github.com/pandas-dev/pandas/blob/a20c169f8aee9c272953be43d89dfa82be5e186b/pandas/core/resample.py#L115... | {
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- [ ] tests added / passed
- [ ] Ensure all linting tests pass, see [here](https://pandas.pydata.org/pandas-docs/dev/development/contributing.html#code-standards) for how to run them
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